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Cow genome map

           
Conread name:
           
rcki29_p3.y1
        

               
Conread position:
               
67-250
               

               
Cow position:
               
chr1:78066321-78066514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
22, 186
               

               
Conread position:
               
69-354
               

               
Cow position:
               
chr1:3608014-3607706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
71-352
               

               
Cow position:
               
chr1:68826706-68827007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
23, 76
               

               
Conread position:
               
72-203
               

               
Cow position:
               
chr1:61742240-61742378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
72-222
               

               
Cow position:
               
chr1:3033992-3034149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
46, 106
               

               
Conread position:
               
72-247
               

               
Cow position:
               
chr1:97144255-97144442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 172
               

               
Conread position:
               
72-352
               

               
Cow position:
               
chr1:38754133-38753818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
72-353
               

               
Cow position:
               
chr1:47886266-47886589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
73-226
               

               
Cow position:
               
chr1:99322354-99322516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 130
               

               
Conread position:
               
73-231
               

               
Cow position:
               
chr1:92590388-92590233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
81, 66
               

               
Conread position:
               
73-250
               

               
Cow position:
               
chr1:55753004-55753197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
74-226
               

               
Cow position:
               
chr1:86512466-86512319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
75-226
               

               
Cow position:
               
chr1:34001256-34001093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
75-234
               

               
Cow position:
               
chr1:67674395-67674565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
48, 72
               

               
Conread position:
               
75-235
               

               
Cow position:
               
chr1:99604978-99605150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
75-248
               

               
Cow position:
               
chr1:83677111-83677303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
75-248
               

               
Cow position:
               
chr1:100449979-100450151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
43, 78
               

               
Conread position:
               
75-250
               

               
Cow position:
               
chr1:71295089-71295269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 173
               

               
Conread position:
               
75-255
               

               
Cow position:
               
chr1:97536492-97536308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
75-339
               

               
Cow position:
               
chr1:96558632-96558924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
75-354
               

               
Cow position:
               
chr1:7971616-7971317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
65, 8
               

               
Conread position:
               
75-355
               

               
Cow position:
               
chr1:42139053-42138762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
75-355
               

               
Cow position:
               
chr1:54258782-54258459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
47, 145
               

               
Conread position:
               
76-227
               

               
Cow position:
               
chr1:81858689-81858855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
76-238
               

               
Cow position:
               
chr1:57638770-57638931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 72
               

               
Conread position:
               
76-248
               

               
Cow position:
               
chr1:22035820-22035636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 179
               

               
Conread position:
               
76-248
               

               
Cow position:
               
chr1:49297863-49297676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 182
               

               
Conread position:
               
76-253
               

               
Cow position:
               
chr1:71636116-71636305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
76-351
               

               
Cow position:
               
chr1:46030150-46030457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
76-353
               

               
Cow position:
               
chr1:23968852-23969140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
18, 214
               

               
Conread position:
               
76-355
               

               
Cow position:
               
chr1:21130915-21131200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
11, 81
               

               
Conread position:
               
76-355
               

               
Cow position:
               
chr1:42545587-42545891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
77-230
               

               
Cow position:
               
chr1:85339588-85339426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
77-247
               

               
Cow position:
               
chr1:81364475-81364286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 185
               

               
Conread position:
               
77-351
               

               
Cow position:
               
chr1:98583959-98583662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 282
               

               
Conread position:
               
77-355
               

               
Cow position:
               
chr1:99570287-99570570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
78-232
               

               
Cow position:
               
chr1:51968737-51968577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
78-240
               

               
Cow position:
               
chr1:37543591-37543754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
50, 23
               

               
Conread position:
               
78-349
               

               
Cow position:
               
chr1:88338860-88338591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 55
               

               
Conread position:
               
78-355
               

               
Cow position:
               
chr1:31807066-31806773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
81-208
               

               
Cow position:
               
chr1:51626589-51626725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
81-224
               

               
Cow position:
               
chr1:40303755-40303599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
81-226
               

               
Cow position:
               
chr1:64421743-64421587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
81-227
               

               
Cow position:
               
chr1:42152282-42152433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 106
               

               
Conread position:
               
81-248
               

               
Cow position:
               
chr1:62322094-62321937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
81-251
               

               
Cow position:
               
chr1:6731386-6731202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
36, 178
               

               
Conread position:
               
81-253
               

               
Cow position:
               
chr1:90840818-90840640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 139
               

               
Conread position:
               
81-355
               

               
Cow position:
               
chr1:35162612-35162304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
82-230
               

               
Cow position:
               
chr1:16060802-16060962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
82-235
               

               
Cow position:
               
chr1:43286535-43286383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 34
               

               
Conread position:
               
82-235
               

               
Cow position:
               
chr1:45576126-45575970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
82-253
               

               
Cow position:
               
chr1:85029142-85028973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
70, 64
               

               
Conread position:
               
82-253
               

               
Cow position:
               
chr1:89509725-89509901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
82-351
               

               
Cow position:
               
chr1:86110539-86110832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
82-355
               

               
Cow position:
               
chr1:11172574-11172270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
83-219
               

               
Cow position:
               
chr1:62181934-62182077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-223
               

               
Cow position:
               
chr1:6759839-6759986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chr1:69250637-69250479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
83-229
               

               
Cow position:
               
chr1:37470696-37470544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
40, 143
               

               
Conread position:
               
83-230
               

               
Cow position:
               
chr1:37321805-37321959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 149
               

               
Conread position:
               
83-231
               

               
Cow position:
               
chr1:242757-242598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-231
               

               
Cow position:
               
chr1:76739709-76739869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-232
               

               
Cow position:
               
chr1:75227120-75227280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-236
               

               
Cow position:
               
chr1:771584-771744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-237
               

               
Cow position:
               
chr1:66445161-66444998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 154
               

               
Conread position:
               
83-238
               

               
Cow position:
               
chr1:17056195-17056024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 105
               

               
Conread position:
               
83-238
               

               
Cow position:
               
chr1:41022621-41022453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-240
               

               
Cow position:
               
chr1:40077995-40077826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-240
               

               
Cow position:
               
chr1:87934075-87934239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-242
               

               
Cow position:
               
chr1:22828368-22828540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-248
               

               
Cow position:
               
chr1:20537407-20537230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
39, 172
               

               
Conread position:
               
83-248
               

               
Cow position:
               
chr1:102648485-102648301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-250
               

               
Cow position:
               
chr1:46004479-46004304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 167
               

               
Conread position:
               
83-250
               

               
Cow position:
               
chr1:71664689-71664875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-253
               

               
Cow position:
               
chr1:25021873-25022055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
39, 172
               

               
Conread position:
               
83-253
               

               
Cow position:
               
chr1:100552171-100551997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 164
               

               
Conread position:
               
83-296
               

               
Cow position:
               
chr1:84116-83888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-328
               

               
Cow position:
               
chr1:95828930-95829194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 198
               

               
Conread position:
               
83-333
               

               
Cow position:
               
chr1:42868745-42869022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
83-333
               

               
Cow position:
               
chr1:47790463-47790749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
39, 132
               

               
Conread position:
               
83-349
               

               
Cow position:
               
chr1:72105605-72105312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
83-351
               

               
Cow position:
               
chr1:97611468-97611753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
56, 32
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr1:21787529-21787227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr1:22526079-22525773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
38, 285
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr1:23186597-23186897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 147
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr1:31413799-31414064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr1:31934709-31934409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr1:54478521-54478221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 75
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr1:68863224-68862930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr1:87888595-87888297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
46, 178
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr1:91065952-91066256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
39, 145
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr1:100817746-100817452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 105
               

               
Conread position:
               
83-354
               

               
Cow position:
               
chr1:6166437-6166139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 247
               

               
Conread position:
               
83-354
               

               
Cow position:
               
chr1:34160033-34159733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
39, 245
               

               
Conread position:
               
83-354
               

               
Cow position:
               
chr1:54156529-54156836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
39, 253
               

               
Conread position:
               
83-354
               

               
Cow position:
               
chr1:69694802-69695096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
83-354
               

               
Cow position:
               
chr1:96365854-96365561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
30, 96
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:3923599-3923900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
42, 242
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:20667545-20667847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
34, 99
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:22628451-22628743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
33, 227
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:36998387-36998090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
30, 255
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:52496973-52496678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
65, 148
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:55230178-55229880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
40, 221
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:55428748-55429059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 275
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:59519116-59518815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:69539890-69539592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:72011617-72011914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:72034723-72035030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
34, 204
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:78794031-78794330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr1:101788892-101789177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
40, 199
               

               
Conread position:
               
84-230
               

               
Cow position:
               
chr1:51860360-51860519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
84-247
               

               
Cow position:
               
chr1:64706673-64706519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
84-247
               

               
Cow position:
               
chr1:101507554-101507384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
84-248
               

               
Cow position:
               
chr1:70044548-70044376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
84-355
               

               
Cow position:
               
chr1:43855493-43855196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
85-353
               

               
Cow position:
               
chr1:48443988-48444297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
86-231
               

               
Cow position:
               
chr1:69411493-69411656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
87-231
               

               
Cow position:
               
chr1:74011090-74010953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
87-235
               

               
Cow position:
               
chr1:39417930-39418074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
87-251
               

               
Cow position:
               
chr1:19031121-19031280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
87-251
               

               
Cow position:
               
chr1:84787461-84787292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
38, 156
               

               
Conread position:
               
87-252
               

               
Cow position:
               
chr1:5636871-5637040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
87-253
               

               
Cow position:
               
chr1:63079202-63079030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 129
               

               
Conread position:
               
87-253
               

               
Cow position:
               
chr1:95835594-95835778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
35, 174
               

               
Conread position:
               
87-272
               

               
Cow position:
               
chr1:2462572-2462367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
87-352
               

               
Cow position:
               
chr1:53370269-53369981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
38, 28
               

               
Conread position:
               
87-353
               

               
Cow position:
               
chr1:9534343-9534069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
87-353
               

               
Cow position:
               
chr1:71045936-71045651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
87-353
               

               
Cow position:
               
chr1:75383164-75382895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
87-354
               

               
Cow position:
               
chr1:6304676-6304967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
87-354
               

               
Cow position:
               
chr1:28177181-28176905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
87-354
               

               
Cow position:
               
chr1:43340432-43340716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
35, 144
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr1:6854118-6854384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
31, 158
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr1:10778755-10778461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 238
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr1:15050521-15050245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr1:82880832-82880539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr1:90595376-90595658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
88-248
               

               
Cow position:
               
chr1:32014391-32014219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
88-256
               

               
Cow position:
               
chr1:91796042-91796213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 89
               

               
Conread position:
               
88-355
               

               
Cow position:
               
chr1:96472615-96472340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
89-230
               

               
Cow position:
               
chr1:64960247-64960392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
89-273
               

               
Cow position:
               
chr1:96362239-96362428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
89-326
               

               
Cow position:
               
chr1:46822149-46821916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 46
               

               
Conread position:
               
92-349
               

               
Cow position:
               
chr1:34686361-34686091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
93-253
               

               
Cow position:
               
chr1:61011370-61011201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
29, 159
               

               
Conread position:
               
93-351
               

               
Cow position:
               
chr1:24406719-24406995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
94-248
               

               
Cow position:
               
chr1:81638733-81638573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 155
               

               
Conread position:
               
95-240
               

               
Cow position:
               
chr1:6941659-6941500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
95-248
               

               
Cow position:
               
chr1:63905071-63905234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 158
               

               
Conread position:
               
95-355
               

               
Cow position:
               
chr1:38055313-38055580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 160
               

               
Conread position:
               
95-355
               

               
Cow position:
               
chr1:77720067-77720340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
27, 83
               

               
Conread position:
               
97-284
               

               
Cow position:
               
chr1:52369990-52370190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 194
               

               
Conread position:
               
98-350
               

               
Cow position:
               
chr1:55819224-55818961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
98-352
               

               
Cow position:
               
chr1:43352481-43352761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
102-231
               

               
Cow position:
               
chr1:40181453-40181584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 19
               

               
Conread position:
               
103-354
               

               
Cow position:
               
chr1:93528879-93528594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
110-227
               

               
Cow position:
               
chr1:45505761-45505882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
5, 14
               

               
Conread position:
               
110-355
               

               
Cow position:
               
chr1:93554995-93554739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
127, 9
               

               
Conread position:
               
113-248
               

               
Cow position:
               
chr1:19304729-19304597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
113-355
               

               
Cow position:
               
chr1:97939115-97938864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
116-240
               

               
Cow position:
               
chr1:31628005-31627880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 87
               

               
Conread position:
               
123-242
               

               
Cow position:
               
chr1:42404284-42404165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
123-355
               

               
Cow position:
               
chr1:6972676-6972424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
125-355
               

               
Cow position:
               
chr1:102647148-102647377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
129, 60
               

               
Conread position:
               
129-251
               

               
Cow position:
               
chr1:13752303-13752426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
132-249
               

               
Cow position:
               
chr1:3955137-3955253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
133-231
               

               
Cow position:
               
chr1:81471493-81471396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
133-238
               

               
Cow position:
               
chr1:20864192-20864087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
133-352
               

               
Cow position:
               
chr1:86061853-86062088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
66, 5
               

               
Conread position:
               
133-352
               

               
Cow position:
               
chr1:86073735-86073493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
96, 189
               

               
Conread position:
               
133-355
               

               
Cow position:
               
chr1:11729314-11729076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
135-354
               

               
Cow position:
               
chr1:8359776-8360002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
137-247
               

               
Cow position:
               
chr1:40530967-40531079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
137-247
               

               
Cow position:
               
chr1:45673889-45673778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
137-326
               

               
Cow position:
               
chr1:68672467-68672676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
137-334
               

               
Cow position:
               
chr1:8347258-8347039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
137-335
               

               
Cow position:
               
chr1:95153357-95153134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
137-350
               

               
Cow position:
               
chr1:1878155-1877929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
95, 200
               

               
Conread position:
               
137-351
               

               
Cow position:
               
chr1:68763552-68763784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
26, 181
               

               
Conread position:
               
137-355
               

               
Cow position:
               
chr1:24777858-24778091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
137-355
               

               
Cow position:
               
chr1:53623087-53622855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
137-355
               

               
Cow position:
               
chr1:76019563-76019797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
95, 16
               

               
Conread position:
               
137-355
               

               
Cow position:
               
chr1:84238986-84239218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
140-247
               

               
Cow position:
               
chr1:84768747-84768853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
141-272
               

               
Cow position:
               
chr1:102495011-102494874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
143-251
               

               
Cow position:
               
chr1:2972046-2971938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-229
               

               
Cow position:
               
chr1:36018655-36018740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
86
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-230
               

               
Cow position:
               
chr1:30194678-30194592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
87
               

               
Alignm identity:
               
75
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-231
               

               
Cow position:
               
chr1:3666903-3666990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-231
               

               
Cow position:
               
chr1:22461110-22461197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-231
               

               
Cow position:
               
chr1:42360416-42360327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
90
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
144-231
               

               
Cow position:
               
chr1:53402909-53402822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-231
               

               
Cow position:
               
chr1:79178756-79178669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-231
               

               
Cow position:
               
chr1:100569284-100569197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-238
               

               
Cow position:
               
chr1:86340340-86340434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-240
               

               
Cow position:
               
chr1:23372986-23372891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
144-240
               

               
Cow position:
               
chr1:96019356-96019260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-247
               

               
Cow position:
               
chr1:42178873-42178771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
144-248
               

               
Cow position:
               
chr1:43148417-43148520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
144-248
               

               
Cow position:
               
chr1:57359590-57359487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
144-248
               

               
Cow position:
               
chr1:64458093-64457990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
144-248
               

               
Cow position:
               
chr1:67529183-67529080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
144-248
               

               
Cow position:
               
chr1:67539687-67539584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
144-248
               

               
Cow position:
               
chr1:95152999-95152896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
144-250
               

               
Cow position:
               
chr1:8353507-8353402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
144-253
               

               
Cow position:
               
chr1:45873942-45874051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-253
               

               
Cow position:
               
chr1:46245613-46245722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 51
               

               
Conread position:
               
144-330
               

               
Cow position:
               
chr1:53640840-53640663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
92, 88
               

               
Conread position:
               
144-348
               

               
Cow position:
               
chr1:38419151-38418934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
89, 182
               

               
Conread position:
               
144-351
               

               
Cow position:
               
chr1:22824033-22823804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
89, 179
               

               
Conread position:
               
144-351
               

               
Cow position:
               
chr1:72068706-72068940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
144-351
               

               
Cow position:
               
chr1:98360276-98360499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 171
               

               
Conread position:
               
144-352
               

               
Cow position:
               
chr1:31794881-31795105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 203
               

               
Conread position:
               
144-353
               

               
Cow position:
               
chr1:874782-874547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
144-353
               

               
Cow position:
               
chr1:4032760-4032525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
144-353
               

               
Cow position:
               
chr1:72813744-72813511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
89, 131
               

               
Conread position:
               
144-353
               

               
Cow position:
               
chr1:100400079-100400299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
144-354
               

               
Cow position:
               
chr1:32001191-32001425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:3138041-3137824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
89, 29
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:4180512-4180726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
77, 55
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:7443104-7442878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:43311643-43311881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 194
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:43447721-43447937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
109, 61
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:49839612-49839400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
100, 73
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:51628383-51628600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 139
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:54199267-54199487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
58, 53
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:57420608-57420832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
89, 54
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:74928012-74927779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
81, 207
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:79164966-79165190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:90868319-90868546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
100, 27
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr1:90975959-90976190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
145-247
               

               
Cow position:
               
chr1:852297-852194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
145-247
               

               
Cow position:
               
chr1:94823265-94823366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
145-273
               

               
Cow position:
               
chr1:77685854-77685988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
145-317
               

               
Cow position:
               
chr1:26984136-26983961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
109, 153
               

               
Conread position:
               
145-327
               

               
Cow position:
               
chr1:98467925-98467730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
88, 169
               

               
Conread position:
               
146-247
               

               
Cow position:
               
chr1:92603145-92603045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
146-318
               

               
Cow position:
               
chr1:19515491-19515683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
146-332
               

               
Cow position:
               
chr1:73457972-73458176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
146-354
               

               
Cow position:
               
chr1:29481504-29481728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 156
               

               
Conread position:
               
146-355
               

               
Cow position:
               
chr1:33720227-33720014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
131, 95
               

               
Conread position:
               
148-355
               

               
Cow position:
               
chr1:23633806-23634009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
85, 129
               

               
Conread position:
               
148-355
               

               
Cow position:
               
chr1:68245196-68245412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
93, 67
               

               
Conread position:
               
149-248
               

               
Cow position:
               
chr1:46100717-46100815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
149-250
               

               
Cow position:
               
chr1:52506049-52506151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
149-253
               

               
Cow position:
               
chr1:11489036-11489139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
149-253
               

               
Cow position:
               
chr1:31630164-31630267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
149-321
               

               
Cow position:
               
chr1:186158-186348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
149-326
               

               
Cow position:
               
chr1:98576170-98575969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
149-345
               

               
Cow position:
               
chr1:30417925-30418133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
88, 162
               

               
Conread position:
               
149-348
               

               
Cow position:
               
chr1:65103738-65103521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
84, 50
               

               
Conread position:
               
149-352
               

               
Cow position:
               
chr1:21836054-21835843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
91, 140
               

               
Conread position:
               
149-353
               

               
Cow position:
               
chr1:55357172-55357388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
149-354
               

               
Cow position:
               
chr1:69264931-69264712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
88, 180
               

               
Conread position:
               
149-354
               

               
Cow position:
               
chr1:80422395-80422176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
149-354
               

               
Cow position:
               
chr1:98594688-98594474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 188
               

               
Conread position:
               
149-354
               

               
Cow position:
               
chr1:101280615-101280820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
87, 107
               

               
Conread position:
               
149-355
               

               
Cow position:
               
chr1:8349201-8349420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
26, 177
               

               
Conread position:
               
149-355
               

               
Cow position:
               
chr1:41252287-41252506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
80, 184
               

               
Conread position:
               
149-355
               

               
Cow position:
               
chr1:80336125-80336344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
10, 190
               

               
Conread position:
               
149-355
               

               
Cow position:
               
chr1:91811902-91811682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
11, 192
               

               
Conread position:
               
149-355
               

               
Cow position:
               
chr1:95057168-95056950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 162
               

               
Conread position:
               
149-355
               

               
Cow position:
               
chr1:101822392-101822606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
84, 24
               

               
Conread position:
               
150-353
               

               
Cow position:
               
chr1:46939762-46939959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
150-355
               

               
Cow position:
               
chr1:731851-732039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
150-355
               

               
Cow position:
               
chr1:34771381-34771609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
80, 181
               

               
Conread position:
               
150-355
               

               
Cow position:
               
chr1:91874795-91875014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
151-250
               

               
Cow position:
               
chr1:3914798-3914895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
151-353
               

               
Cow position:
               
chr1:49796113-49795901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 181
               

               
Conread position:
               
153-353
               

               
Cow position:
               
chr1:75933385-75933169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
153-354
               

               
Cow position:
               
chr1:100706245-100706029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
153-355
               

               
Cow position:
               
chr1:6826180-6826394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
77, 169
               

               
Conread position:
               
153-355
               

               
Cow position:
               
chr1:65909629-65909422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
153-355
               

               
Cow position:
               
chr1:84240999-84240787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
53, 37
               

               
Conread position:
               
154-354
               

               
Cow position:
               
chr1:76470761-76470551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
154-355
               

               
Cow position:
               
chr1:85549960-85550183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
155-352
               

               
Cow position:
               
chr1:30047486-30047696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
87, 55
               

               
Conread position:
               
156-353
               

               
Cow position:
               
chr1:43822515-43822297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
157-354
               

               
Cow position:
               
chr1:95215075-95215285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
74, 136
               

               
Conread position:
               
157-355
               

               
Cow position:
               
chr1:100421935-100421727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
60, 134
               

               
Conread position:
               
158-355
               

               
Cow position:
               
chr1:61542805-61543023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
162-353
               

               
Cow position:
               
chr1:26702097-26702310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
162-354
               

               
Cow position:
               
chr1:63434696-63434910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
162-354
               

               
Cow position:
               
chr1:77683462-77683253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
166-328
               

               
Cow position:
               
chr1:25194792-25194948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 79
               

               
Conread position:
               
167-355
               

               
Cow position:
               
chr1:45288766-45288977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
181-355
               

               
Cow position:
               
chr1:4374246-4374445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 143
               

               
Conread position:
               
183-355
               

               
Cow position:
               
chr1:85597027-85596836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
217-355
               

               
Cow position:
               
chr1:83593768-83593908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 6
               

               
Conread position:
               
230-355
               

               
Cow position:
               
chr1:81471160-81471027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 30
               

               
Conread position:
               
232-354
               

               
Cow position:
               
chr1:68951652-68951523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
232-355
               

               
Cow position:
               
chr1:22448556-22448692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
232-355
               

               
Cow position:
               
chr1:24445602-24445733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
232-355
               

               
Cow position:
               
chr1:38544439-38544568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
232-355
               

               
Cow position:
               
chr1:42398166-42398299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
232-355
               

               
Cow position:
               
chr1:53425201-53425070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
232-355
               

               
Cow position:
               
chr1:57395911-57396035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
232-355
               

               
Cow position:
               
chr1:101946689-101946815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
233-352
               

               
Cow position:
               
chr1:43703433-43703305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
240-353
               

               
Cow position:
               
chr1:63905457-63905575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
240-354
               

               
Cow position:
               
chr1:6941477-6941359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
242-354
               

               
Cow position:
               
chr1:6958888-6958772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
242-355
               

               
Cow position:
               
chr1:71818446-71818563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
242-355
               

               
Cow position:
               
chr1:100770738-100770854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
248-354
               

               
Cow position:
               
chr1:15311872-15311766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 13
               

               
Conread position:
               
273-355
               

               
Cow position:
               
chr1:87095253-87095335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
83
               

               
Alignm identity:
               
73
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
276-353
               

               
Cow position:
               
chr1:40531139-40531216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
78
               

               
Alignm identity:
               
71
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
63-231
               

               
Cow position:
               
chr10:58148973-58149158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
71-296
               

               
Cow position:
               
chr10:40164192-40164432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 85
               

               
Conread position:
               
71-352
               

               
Cow position:
               
chr10:14396469-14396776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 193
               

               
Conread position:
               
71-353
               

               
Cow position:
               
chr10:41254421-41254703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
183, 46
               

               
Conread position:
               
72-231
               

               
Cow position:
               
chr10:28395133-28395290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
72-253
               

               
Cow position:
               
chr10:61509761-61509953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
51, 182
               

               
Conread position:
               
72-344
               

               
Cow position:
               
chr10:34898143-34897861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
17, 236
               

               
Conread position:
               
72-355
               

               
Cow position:
               
chr10:63276576-63276257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
15, 52
               

               
Conread position:
               
73-253
               

               
Cow position:
               
chr10:29091182-29091356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
73-355
               

               
Cow position:
               
chr10:49046003-49045708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
160, 48
               

               
Conread position:
               
74-235
               

               
Cow position:
               
chr10:41676231-41676402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 130
               

               
Conread position:
               
74-349
               

               
Cow position:
               
chr10:1976135-1976446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
74-355
               

               
Cow position:
               
chr10:47543254-47542953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
45, 260
               

               
Conread position:
               
75-235
               

               
Cow position:
               
chr10:17073184-17073357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
75-235
               

               
Cow position:
               
chr10:37529091-37529258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
75-247
               

               
Cow position:
               
chr10:37971945-37971765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 49
               

               
Conread position:
               
75-279
               

               
Cow position:
               
chr10:11060348-11060565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 102
               

               
Conread position:
               
75-349
               

               
Cow position:
               
chr10:24307788-24308044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 12
               

               
Conread position:
               
75-354
               

               
Cow position:
               
chr10:66128033-66127729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
65, 249
               

               
Conread position:
               
75-355
               

               
Cow position:
               
chr10:7304748-7304438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
76-216
               

               
Cow position:
               
chr10:4278148-4278301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
76-346
               

               
Cow position:
               
chr10:17844947-17844640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 278
               

               
Conread position:
               
76-352
               

               
Cow position:
               
chr10:64182625-64182319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
76-355
               

               
Cow position:
               
chr10:6384707-6384400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 263
               

               
Conread position:
               
77-231
               

               
Cow position:
               
chr10:10575489-10575326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
77-235
               

               
Cow position:
               
chr10:37425957-37426126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
78-355
               

               
Cow position:
               
chr10:24871352-24871030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
81-219
               

               
Cow position:
               
chr10:26968116-26967980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
81-235
               

               
Cow position:
               
chr10:25822077-25822235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 131
               

               
Conread position:
               
81-247
               

               
Cow position:
               
chr10:35605221-35605046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
37, 171
               

               
Conread position:
               
81-248
               

               
Cow position:
               
chr10:50498365-50498531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 7
               

               
Conread position:
               
81-250
               

               
Cow position:
               
chr10:22980801-22980985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
8, 177
               

               
Conread position:
               
81-253
               

               
Cow position:
               
chr10:15602001-15602190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
41, 180
               

               
Conread position:
               
81-253
               

               
Cow position:
               
chr10:59572069-59571892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
81-311
               

               
Cow position:
               
chr10:10634389-10634153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 170
               

               
Conread position:
               
81-349
               

               
Cow position:
               
chr10:24753313-24753020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
81-350
               

               
Cow position:
               
chr10:35904668-35904954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
81-353
               

               
Cow position:
               
chr10:44771824-44771528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
41, 240
               

               
Conread position:
               
81-355
               

               
Cow position:
               
chr10:54477255-54476971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
5, 52
               

               
Conread position:
               
82-213
               

               
Cow position:
               
chr10:14638666-14638801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
82-235
               

               
Cow position:
               
chr10:34646280-34646439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
82-248
               

               
Cow position:
               
chr10:23576716-23576542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 135
               

               
Conread position:
               
82-248
               

               
Cow position:
               
chr10:26102975-26103144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
82-344
               

               
Cow position:
               
chr10:34674190-34673896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
32, 92
               

               
Conread position:
               
82-351
               

               
Cow position:
               
chr10:3276144-3275862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
41, 258
               

               
Conread position:
               
82-352
               

               
Cow position:
               
chr10:5020223-5020496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
155, 46
               

               
Conread position:
               
82-353
               

               
Cow position:
               
chr10:6531990-6532284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 243
               

               
Conread position:
               
82-355
               

               
Cow position:
               
chr10:15817622-15817928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 138
               

               
Conread position:
               
83-219
               

               
Cow position:
               
chr10:30452005-30451862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-225
               

               
Cow position:
               
chr10:56996536-56996691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
83-230
               

               
Cow position:
               
chr10:23379304-23379146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-230
               

               
Cow position:
               
chr10:47159380-47159227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
69, 31
               

               
Conread position:
               
83-231
               

               
Cow position:
               
chr10:9656350-9656511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-231
               

               
Cow position:
               
chr10:17567930-17568089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
83-235
               

               
Cow position:
               
chr10:23055918-23056070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
83-236
               

               
Cow position:
               
chr10:9444440-9444597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
83-240
               

               
Cow position:
               
chr10:53365191-53365030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
83-246
               

               
Cow position:
               
chr10:51289419-51289247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 168
               

               
Conread position:
               
83-247
               

               
Cow position:
               
chr10:9797737-9797914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
41, 164
               

               
Conread position:
               
83-247
               

               
Cow position:
               
chr10:9959393-9959212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 108
               

               
Conread position:
               
83-248
               

               
Cow position:
               
chr10:34700790-34700626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
42, 70
               

               
Conread position:
               
83-248
               

               
Cow position:
               
chr10:37708851-37709021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 165
               

               
Conread position:
               
83-248
               

               
Cow position:
               
chr10:39140483-39140315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 39
               

               
Conread position:
               
83-248
               

               
Cow position:
               
chr10:52125517-52125691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
83-250
               

               
Cow position:
               
chr10:42115530-42115353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 169
               

               
Conread position:
               
83-253
               

               
Cow position:
               
chr10:23478765-23478940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
83-253
               

               
Cow position:
               
chr10:50050073-50049897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
40, 166
               

               
Conread position:
               
83-272
               

               
Cow position:
               
chr10:35820163-35820358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
39, 135
               

               
Conread position:
               
83-281
               

               
Cow position:
               
chr10:16598866-16598652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 177
               

               
Conread position:
               
83-327
               

               
Cow position:
               
chr10:63484812-63484534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 131
               

               
Conread position:
               
83-328
               

               
Cow position:
               
chr10:48178514-48178245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-341
               

               
Cow position:
               
chr10:15868430-15868128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-351
               

               
Cow position:
               
chr10:7291640-7291928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 32
               

               
Conread position:
               
83-351
               

               
Cow position:
               
chr10:18849698-18849425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
40, 161
               

               
Conread position:
               
83-351
               

               
Cow position:
               
chr10:69934608-69934899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
34, 244
               

               
Conread position:
               
83-352
               

               
Cow position:
               
chr10:25342757-25342470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
40, 130
               

               
Conread position:
               
83-352
               

               
Cow position:
               
chr10:45378826-45379136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-352
               

               
Cow position:
               
chr10:58557341-58557064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr10:25990-25697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr10:2849504-2849223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
154, 59
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr10:33732727-33733001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
132, 32
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr10:37884638-37884927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr10:43439029-43438741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr10:64285624-64285926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 251
               

               
Conread position:
               
83-354
               

               
Cow position:
               
chr10:56475629-56475332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr10:6768568-6768844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
111, 32
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr10:10751812-10752111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 178
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr10:15871716-15872007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
69, 23
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr10:24312717-24313021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 105
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr10:24560814-24561122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
38, 253
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr10:26731493-26731779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
144, 60
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr10:34661157-34661449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 137
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr10:37014811-37014501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
40, 280
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr10:40738165-40737868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 131
               

               
Conread position:
               
83-355
               

               
Cow position:
               
chr10:42313081-42312772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
84-232
               

               
Cow position:
               
chr10:9539986-9539839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
38, 52
               

               
Conread position:
               
84-355
               

               
Cow position:
               
chr10:6436231-6435924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
84-355
               

               
Cow position:
               
chr10:19372180-19372473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
85-246
               

               
Cow position:
               
chr10:30224844-30224680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 93
               

               
Conread position:
               
85-336
               

               
Cow position:
               
chr10:31528140-31527861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 130
               

               
Conread position:
               
85-344
               

               
Cow position:
               
chr10:64838878-64839136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
163, 52
               

               
Conread position:
               
86-248
               

               
Cow position:
               
chr10:17448037-17448203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 161
               

               
Conread position:
               
86-253
               

               
Cow position:
               
chr10:58638177-58638004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
86-273
               

               
Cow position:
               
chr10:46171886-46172070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
87-235
               

               
Cow position:
               
chr10:7089511-7089354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
87-235
               

               
Cow position:
               
chr10:60345751-60345901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
87-272
               

               
Cow position:
               
chr10:32080438-32080229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
87-314
               

               
Cow position:
               
chr10:10138031-10137773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
87-353
               

               
Cow position:
               
chr10:6235288-6235564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
43, 222
               

               
Conread position:
               
87-353
               

               
Cow position:
               
chr10:54947973-54948268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 205
               

               
Conread position:
               
87-353
               

               
Cow position:
               
chr10:69567992-69567721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 136
               

               
Conread position:
               
87-354
               

               
Cow position:
               
chr10:4311332-4311055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 159
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr10:2201964-2202259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr10:4109749-4109455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr10:10469134-10468846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 229
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr10:33914897-33915195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 271
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr10:39387619-39387324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr10:45658310-45658010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr10:48462176-48462473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr10:50533707-50534005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
89-250
               

               
Cow position:
               
chr10:54548671-54548506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 119
               

               
Conread position:
               
91-355
               

               
Cow position:
               
chr10:50182887-50183184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
92-235
               

               
Cow position:
               
chr10:36864525-36864375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
92-240
               

               
Cow position:
               
chr10:55319659-55319498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
92-355
               

               
Cow position:
               
chr10:10985346-10985624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
33, 151
               

               
Conread position:
               
92-355
               

               
Cow position:
               
chr10:42746076-42745782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
94-307
               

               
Cow position:
               
chr10:13918108-13918340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
94-355
               

               
Cow position:
               
chr10:26631557-26631301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
94-355
               

               
Cow position:
               
chr10:40420691-40420976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
96-247
               

               
Cow position:
               
chr10:51727264-51727427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 154
               

               
Conread position:
               
97-319
               

               
Cow position:
               
chr10:15425187-15424954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
136, 18
               

               
Conread position:
               
97-355
               

               
Cow position:
               
chr10:22594084-22593814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
28, 152
               

               
Conread position:
               
103-332
               

               
Cow position:
               
chr10:517420-517180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
118-353
               

               
Cow position:
               
chr10:39109890-39110137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
5, 193
               

               
Conread position:
               
119-253
               

               
Cow position:
               
chr10:33195165-33195032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 5
               

               
Conread position:
               
122-250
               

               
Cow position:
               
chr10:53674946-53674819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
134-352
               

               
Cow position:
               
chr10:35862120-35862357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
104, 26
               

               
Conread position:
               
137-248
               

               
Cow position:
               
chr10:64877607-64877715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
137-253
               

               
Cow position:
               
chr10:32573835-32573721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
137-254
               

               
Cow position:
               
chr10:19394468-19394584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
99, 95
               

               
Conread position:
               
137-289
               

               
Cow position:
               
chr10:23127881-23128052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
137-303
               

               
Cow position:
               
chr10:33311381-33311558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
137-353
               

               
Cow position:
               
chr10:668971-668749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
64, 92
               

               
Conread position:
               
137-354
               

               
Cow position:
               
chr10:24375649-24375418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
96, 80
               

               
Conread position:
               
137-355
               

               
Cow position:
               
chr10:32503533-32503313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 106
               

               
Conread position:
               
137-355
               

               
Cow position:
               
chr10:37295567-37295800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
137-355
               

               
Cow position:
               
chr10:61839688-61839460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
96, 60
               

               
Conread position:
               
140-248
               

               
Cow position:
               
chr10:890066-889958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
143-240
               

               
Cow position:
               
chr10:7786869-7786772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
143-352
               

               
Cow position:
               
chr10:45871614-45871385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
144-230
               

               
Cow position:
               
chr10:31265956-31266042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
87
               

               
Alignm identity:
               
75
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-231
               

               
Cow position:
               
chr10:22810959-22811046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-231
               

               
Cow position:
               
chr10:25466165-25466078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-231
               

               
Cow position:
               
chr10:62454271-62454358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-232
               

               
Cow position:
               
chr10:57457727-57457639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-248
               

               
Cow position:
               
chr10:2260242-2260138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
144-248
               

               
Cow position:
               
chr10:33462287-33462390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
144-248
               

               
Cow position:
               
chr10:48316849-48316951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
144-248
               

               
Cow position:
               
chr10:48377300-48377402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
144-250
               

               
Cow position:
               
chr10:38799936-38799827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
144-252
               

               
Cow position:
               
chr10:39258396-39258505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
144-270
               

               
Cow position:
               
chr10:50042701-50042564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
144-282
               

               
Cow position:
               
chr10:62219932-62219795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
144-352
               

               
Cow position:
               
chr10:6173432-6173226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
133, 81
               

               
Conread position:
               
144-352
               

               
Cow position:
               
chr10:29919740-29919966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
144-353
               

               
Cow position:
               
chr10:4184294-4184059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
144-353
               

               
Cow position:
               
chr10:24132725-24132953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
144-353
               

               
Cow position:
               
chr10:25936330-25936108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 80
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr10:13316037-13315806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
89, 180
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr10:16986430-16986195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
89, 176
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr10:18011276-18011069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
14, 117
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr10:19403007-19402800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 90
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr10:19895491-19895261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr10:20372037-20372261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr10:22049353-22049125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 48
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr10:26209149-26209393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
89, 131
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr10:42123494-42123729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
144-355
               

               
Cow position:
               
chr10:54936032-54936245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
145-242
               

               
Cow position:
               
chr10:52152892-52152797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
145-272
               

               
Cow position:
               
chr10:58736868-58737002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr10:55122904-55122667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
146-254
               

               
Cow position:
               
chr10:32986073-32986180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 53
               

               
Conread position:
               
147-248
               

               
Cow position:
               
chr10:2708967-2708867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
148-349
               

               
Cow position:
               
chr10:15426987-15427196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
104, 60
               

               
Conread position:
               
148-353
               

               
Cow position:
               
chr10:12315240-12315023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
26, 5
               

               
Conread position:
               
149-248
               

               
Cow position:
               
chr10:20485466-20485566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
149-273
               

               
Cow position:
               
chr10:58285714-58285846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 9
               

               
Conread position:
               
149-340
               

               
Cow position:
               
chr10:34660149-34660362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
84, 182
               

               
Conread position:
               
149-350
               

               
Cow position:
               
chr10:2538183-2537965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 16
               

               
Conread position:
               
149-351
               

               
Cow position:
               
chr10:59164014-59164226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
149-351
               

               
Cow position:
               
chr10:65133037-65132828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
149-354
               

               
Cow position:
               
chr10:51942882-51942657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 170
               

               
Conread position:
               
149-355
               

               
Cow position:
               
chr10:10720581-10720808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
149-355
               

               
Cow position:
               
chr10:20132435-20132661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
149-355
               

               
Cow position:
               
chr10:30787535-30787747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 23
               

               
Conread position:
               
150-347
               

               
Cow position:
               
chr10:63312653-63312863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
74, 117
               
150-352UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr10:19104096-19104302 (view  custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
93, 50
               
150-352UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:25913705-25913927 (view  custom track)

               
               
               
Alignm length:
223

               
               
               
Alignm identity:
162

               
               
               
Alignm E-value:
3e-25

               
               
               
Alignm gaps (pig, cow):
77, 0
150-352UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:63884031-63883822 (view  custom track)

               
               
               
Alignm length:
210

               
               
               
Alignm identity:
144

               
               
               
Alignm E-value:
3e-23

               
               
               
Alignm gaps (pig, cow):
87, 0

               
               
               Conread position:150-354
               
               
               Cow position:chr10:10048762-10048550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:150-355
               
               
               Cow position:chr10:23912420-23912630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):77, 168

               
               
               Conread position:150-355
               
               
               Cow position:chr10:52113581-52113806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:151-352
               
               
               Cow position:chr10:22480377-22480168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:153-353
               
               
               Cow position:chr10:29166362-29166150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):79, 168

               
               
               Conread position:153-354
               
               
               Cow position:chr10:35752873-35753091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 66

               
               
               Conread position:154-250
               
               
               Cow position:chr10:37442631-37442534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:154-352
               
               
               Cow position:chr10:20391356-20391567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 185

               
               
               Conread position:154-354
               
               
               Cow position:chr10:24745208-24744992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:157-354
               
               
               Cow position:chr10:65423819-65424033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:159-352
               
               
               Cow position:chr10:20997204-20997408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 142

               
               
               Conread position:161-355
               
               
               Cow position:chr10:47725025-47724816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:163-355
               
               
               Cow position:chr10:53934673-53934871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 124

               
               
               Conread position:165-355
               
               
               Cow position:chr10:47412029-47412240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:188-336
               
               
               Cow position:chr10:59440872-59440711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 145

               
               
               Conread position:189-353
               
               
               Cow position:chr10:24548303-24548123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:200-353
               
               
               Cow position:chr10:24276703-24276866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:202-355
               
               
               Cow position:chr10:14098293-14098454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 6

               
               
               Conread position:207-349
               
               
               Cow position:chr10:57457355-57457206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:223-352
               
               
               Cow position:chr10:4484662-4484535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:229-355
               
               
               Cow position:chr10:35856356-35856485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:229-355
               
               
               Cow position:chr10:35857061-35857190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr10:35767087-35767217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr10:25882412-25882289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 83

               
               
               Conread position:232-355
               
               
               Cow position:chr10:37442303-37442170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr10:37444222-37444355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr10:37528609-37528740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr10:43508986-43508856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:233-355
               
               
               Cow position:chr10:24866046-24866170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:237-353
               
               
               Cow position:chr10:9445028-9445147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:240-354
               
               
               Cow position:chr10:48500084-48499970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:240-355
               
               
               Cow position:chr10:17983171-17983050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:242-355
               
               
               Cow position:chr10:50200697-50200579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:245-355
               
               
               Cow position:chr10:60936923-60936810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:277-355
               
               
               Cow position:chr10:48377698-48377776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:74
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-247
               
               
               Cow position:chr11:69417599-69417402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:71-250
               
               
               Cow position:chr11:21736116-21736300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:71-281
               
               
               Cow position:chr11:57608271-57608496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 108

               
               
               Conread position:72-350
               
               
               Cow position:chr11:41215927-41215618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:74-231
               
               
               Cow position:chr11:44032198-44032029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:74-238
               
               
               Cow position:chr11:9699070-9698909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:74-250
               
               
               Cow position:chr11:37975112-37974934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 89

               
               
               Conread position:74-253
               
               
               Cow position:chr11:18447309-18447495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):48, 176

               
               
               Conread position:74-352
               
               
               Cow position:chr11:27907962-27907667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):48, 128

               
               
               Conread position:74-354
               
               
               Cow position:chr11:68913335-68913014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:74-355
               
               
               Cow position:chr11:19247012-19247325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:75-209
               
               
               Cow position:chr11:25751058-25750916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:75-210
               
               
               Cow position:chr11:3267477-3267617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:75-226
               
               
               Cow position:chr11:37335913-37336067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 70

               
               
               Conread position:75-245
               
               
               Cow position:chr11:37099981-37100170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:75-248
               
               
               Cow position:chr11:20205667-20205850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 178

               
               
               Conread position:75-350
               
               
               Cow position:chr11:23251407-23251716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):13, 112

               
               
               Conread position:75-350
               
               
               Cow position:chr11:26117546-26117844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):7, 51

               
               
               Conread position:75-354
               
               
               Cow position:chr11:71868434-71868732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):152, 27

               
               
               Conread position:75-355
               
               
               Cow position:chr11:84385447-84385766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:76-235
               
               
               Cow position:chr11:30830433-30830600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:76-248
               
               
               Cow position:chr11:79666072-79666260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 183

               
               
               Conread position:76-352
               
               
               Cow position:chr11:42002795-42003070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:77-210
               
               
               Cow position:chr11:21322316-21322456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:77-231
               
               
               Cow position:chr11:63478551-63478395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):37, 142

               
               
               Conread position:77-247
               
               
               Cow position:chr11:48512332-48512167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:77-253
               
               
               Cow position:chr11:21830021-21830213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):8, 182

               
               
               Conread position:78-352
               
               
               Cow position:chr11:13592928-13592612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):10, 295

               
               
               Conread position:78-352
               
               
               Cow position:chr11:50472506-50472189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:81-219
               
               
               Cow position:chr11:17369711-17369560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-225
               
               
               Cow position:chr11:76835452-76835601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:81-230
               
               
               Cow position:chr11:68570196-68570362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:81-231
               
               
               Cow position:chr11:74839788-74839628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:81-253
               
               
               Cow position:chr11:25721820-25722000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 141

               
               
               Conread position:81-253
               
               
               Cow position:chr11:55494849-55494676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:81-354
               
               
               Cow position:chr11:15772528-15772843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-354
               
               
               Cow position:chr11:38236430-38236115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-354
               
               
               Cow position:chr11:48660115-48659803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-355
               
               
               Cow position:chr11:7924418-7924711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):8, 245

               
               
               Conread position:82-237
               
               
               Cow position:chr11:62483790-62483949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 155

               
               
               Conread position:82-240
               
               
               Cow position:chr11:35669782-35669943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 33

               
               
               Conread position:82-247
               
               
               Cow position:chr11:44636596-44636755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):155, 40

               
               
               Conread position:82-248
               
               
               Cow position:chr11:43914477-43914293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 179

               
               
               Conread position:82-349
               
               
               Cow position:chr11:57873992-57873706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 131

               
               
               Conread position:82-355
               
               
               Cow position:chr11:17661247-17660965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:83-218
               
               
               Cow position:chr11:2937489-2937633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-227
               
               
               Cow position:chr11:31901354-31901208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr11:6094221-6094384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr11:37565052-37564892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr11:13404867-13405019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 65

               
               
               Conread position:83-235
               
               
               Cow position:chr11:38223610-38223774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:83-240
               
               
               Cow position:chr11:5176198-5176368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr11:66041455-66041287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-245
               
               
               Cow position:chr11:38194360-38194200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:83-247
               
               
               Cow position:chr11:19549659-19549483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 138

               
               
               Conread position:83-247
               
               
               Cow position:chr11:72871080-72870906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):41, 170

               
               
               Conread position:83-247
               
               
               Cow position:chr11:77017413-77017242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:83-248
               
               
               Cow position:chr11:35536758-35536589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:83-248
               
               
               Cow position:chr11:58186055-58185884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 166

               
               
               Conread position:83-248
               
               
               Cow position:chr11:80586448-80586276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:83-248
               
               
               Cow position:chr11:81614341-81614512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 166

               
               
               Conread position:83-249
               
               
               Cow position:chr11:5218980-5219161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:83-250
               
               
               Cow position:chr11:48900676-48900845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:83-252
               
               
               Cow position:chr11:15366795-15366977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-253
               
               
               Cow position:chr11:19578839-19579019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:83-253
               
               
               Cow position:chr11:25320347-25320182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:83-263
               
               
               Cow position:chr11:81143361-81143557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-273
               
               
               Cow position:chr11:28078672-28078463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-273
               
               
               Cow position:chr11:51195914-51196115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 60

               
               
               Conread position:83-281
               
               
               Cow position:chr11:18785713-18785917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-333
               
               
               Cow position:chr11:15467629-15467357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-350
               
               
               Cow position:chr11:35276434-35276178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):31, 50

               
               
               Conread position:83-351
               
               
               Cow position:chr11:13940370-13940066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-351
               
               
               Cow position:chr11:42016456-42016758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:83-352
               
               
               Cow position:chr11:27719156-27719449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 164

               
               
               Conread position:83-352
               
               
               Cow position:chr11:64044400-64044115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:83-353
               
               
               Cow position:chr11:38639282-38638992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:83-353
               
               
               Cow position:chr11:49153123-49152825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):39, 281

               
               
               Conread position:83-354
               
               
               Cow position:chr11:39462802-39462501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):39, 270

               
               
               Conread position:83-354
               
               
               Cow position:chr11:42083636-42083350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-354
               
               
               Cow position:chr11:61349034-61348761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):34, 68

               
               
               Conread position:83-354
               
               
               Cow position:chr11:65495161-65495454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 207

               
               
               Conread position:83-354
               
               
               Cow position:chr11:70756657-70756353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 249

               
               
               Conread position:83-355
               
               
               Cow position:chr11:2084328-2084012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr11:4662880-4663175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr11:9270555-9270855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:83-355
               
               
               Cow position:chr11:13500193-13499887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 42

               
               
               Conread position:83-355
               
               
               Cow position:chr11:26143916-26144225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:83-355
               
               
               Cow position:chr11:31866762-31866470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:83-355
               
               
               Cow position:chr11:32693311-32693600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 63

               
               
               Conread position:83-355
               
               
               Cow position:chr11:41133897-41134194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr11:49057566-49057273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr11:52690342-52690651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:83-355
               
               
               Cow position:chr11:78380886-78381183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):44, 242

               
               
               Conread position:83-355
               
               
               Cow position:chr11:82107737-82108022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):132, 52

               
               
               Conread position:84-230
               
               
               Cow position:chr11:77227712-77227557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:84-248
               
               
               Cow position:chr11:3797886-3797717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 128

               
               
               Conread position:84-248
               
               
               Cow position:chr11:17559297-17559132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:84-355
               
               
               Cow position:chr11:17227470-17227775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 6

               
               
               Conread position:85-335
               
               
               Cow position:chr11:46499172-46498939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:85-355
               
               
               Cow position:chr11:62742467-62742762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 228

               
               
               Conread position:85-355
               
               
               Cow position:chr11:67804918-67804623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:86-238
               
               
               Cow position:chr11:1485054-1485215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 157

               
               
               Conread position:86-238
               
               
               Cow position:chr11:33369332-33369162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 166

               
               
               Conread position:86-248
               
               
               Cow position:chr11:9699075-9699245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:86-248
               
               
               Cow position:chr11:23220540-23220364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 153

               
               
               Conread position:87-248
               
               
               Cow position:chr11:49149225-49149050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:87-248
               
               
               Cow position:chr11:84764196-84764036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:87-306
               
               
               Cow position:chr11:84968544-84968323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 186

               
               
               Conread position:87-314
               
               
               Cow position:chr11:63485111-63484867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 209

               
               
               Conread position:87-333
               
               
               Cow position:chr11:6194567-6194300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:87-333
               
               
               Cow position:chr11:30211064-30210799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:87-347
               
               
               Cow position:chr11:63919888-63920170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 234

               
               
               Conread position:87-353
               
               
               Cow position:chr11:12111297-12111578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:87-353
               
               
               Cow position:chr11:18484022-18484293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 139

               
               
               Conread position:87-354
               
               
               Cow position:chr11:36112588-36112297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:87-355
               
               
               Cow position:chr11:21843960-21844262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 123

               
               
               Conread position:87-355
               
               
               Cow position:chr11:33348020-33348313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):67, 92

               
               
               Conread position:87-355
               
               
               Cow position:chr11:51729453-51729159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 260

               
               
               Conread position:88-353
               
               
               Cow position:chr11:65607513-65607818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:88-355
               
               
               Cow position:chr11:33414404-33414108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:88-355
               
               
               Cow position:chr11:45631602-45631891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:89-230
               
               
               Cow position:chr11:65858240-65858101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:89-335
               
               
               Cow position:chr11:54133930-54134181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):155, 33

               
               
               Conread position:89-353
               
               
               Cow position:chr11:14470538-14470243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):34, 195

               
               
               Conread position:91-248
               
               
               Cow position:chr11:36920403-36920576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:92-355
               
               
               Cow position:chr11:83926205-83925921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:93-248
               
               
               Cow position:chr11:34113426-34113266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:94-355
               
               
               Cow position:chr11:13042976-13043273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):28, 271

               
               
               Conread position:95-327
               
               
               Cow position:chr11:34467733-34467485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):30, 195

               
               
               Conread position:95-355
               
               
               Cow position:chr11:28993577-28993861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:95-355
               
               
               Cow position:chr11:60301806-60302088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):30, 248

               
               
               Conread position:95-355
               
               
               Cow position:chr11:73353896-73354183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:96-235
               
               
               Cow position:chr11:18210022-18210159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:97-252
               
               
               Cow position:chr11:1142685-1142842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:97-355
               
               
               Cow position:chr11:85703858-85703577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:110-353
               
               
               Cow position:chr11:49934592-49934864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:115-232
               
               
               Cow position:chr11:29946779-29946897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:122-355
               
               
               Cow position:chr11:59873062-59872802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:130-355
               
               
               Cow position:chr11:38874285-38874532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:133-250
               
               
               Cow position:chr11:61178473-61178357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:134-354
               
               
               Cow position:chr11:40478738-40478978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:135-355
               
               
               Cow position:chr11:36799194-36799431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):98, 43

               
               
               Conread position:137-230
               
               
               Cow position:chr11:6320021-6320114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-230
               
               
               Cow position:chr11:75246459-75246367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:81
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:137-240
               
               
               Cow position:chr11:37982466-37982569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-344
               
               
               Cow position:chr11:17831111-17831339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:137-352
               
               
               Cow position:chr11:33345557-33345317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-352
               
               
               Cow position:chr11:36849029-36848801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:137-352
               
               
               Cow position:chr11:65826639-65826868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 139

               
               
               Conread position:137-352
               
               
               Cow position:chr11:81406057-81406285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 22

               
               
               Conread position:137-353
               
               
               Cow position:chr11:17574238-17574459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):136, 113

               
               
               Conread position:137-354
               
               
               Cow position:chr11:16906939-16907172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr11:21894047-21894281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:137-355
               
               
               Cow position:chr11:70278001-70278237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr11:86925849-86926056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:140-354
               
               
               Cow position:chr11:41985937-41986171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):93, 216

               
               
               Conread position:141-229
               
               
               Cow position:chr11:32800733-32800645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:77
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:141-355
               
               
               Cow position:chr11:15373947-15373723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:143-292
               
               
               Cow position:chr11:81931011-81931170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 145

               
               
               Conread position:143-353
               
               
               Cow position:chr11:9221626-9221851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:143-353
               
               
               Cow position:chr11:77118805-77118583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:144-229
               
               
               Cow position:chr11:80596442-80596357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:76
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr11:46333578-46333491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:77
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr11:46884478-46884391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr11:49486883-49486796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:77
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr11:62889789-62889876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr11:78780754-78780841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:79
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-238
               
               
               Cow position:chr11:34623275-34623181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr11:1067335-1067431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr11:2284748-2284652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:80
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr11:60486314-60486410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:80
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-245
               
               
               Cow position:chr11:39854913-39855015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr11:66939488-66939594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr11:69415494-69415598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr11:35109434-35109538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 42

               
               
               Conread position:144-248
               
               
               Cow position:chr11:36917674-36917777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:144-248
               
               
               Cow position:chr11:42084571-42084674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-250
               
               
               Cow position:chr11:62168227-62168331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:144-250
               
               
               Cow position:chr11:62609709-62609604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-252
               
               
               Cow position:chr11:25783817-25783708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:144-253
               
               
               Cow position:chr11:2835963-2835853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:144-253
               
               
               Cow position:chr11:60720351-60720459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-288
               
               
               Cow position:chr11:34136345-34136188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-306
               
               
               Cow position:chr11:3283128-3282953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:144-335
               
               
               Cow position:chr11:5789795-5790000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):85, 142

               
               
               Conread position:144-351
               
               
               Cow position:chr11:2344359-2344148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 90

               
               
               Conread position:144-352
               
               
               Cow position:chr11:70422493-70422697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):143, 14

               
               
               Conread position:144-353
               
               
               Cow position:chr11:37514660-37514451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):147, 98

               
               
               Conread position:144-353
               
               
               Cow position:chr11:70600724-70600946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr11:32094959-32095179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:144-354
               
               
               Cow position:chr11:48474808-48474575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr11:83066592-83066366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr11:6245418-6245193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 9

               
               
               Conread position:144-355
               
               
               Cow position:chr11:10388520-10388727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr11:17278571-17278793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):82, 178

               
               
               Conread position:144-355
               
               
               Cow position:chr11:18508926-18509147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 128

               
               
               Conread position:144-355
               
               
               Cow position:chr11:34144820-34145044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr11:43008215-43008435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr11:63435625-63435388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr11:71492757-71492984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:145-354
               
               
               Cow position:chr11:77758658-77758884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:148-250
               
               
               Cow position:chr11:55714543-55714441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:83
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-248
               
               
               Cow position:chr11:9836357-9836455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:149-248
               
               
               Cow position:chr11:59916246-59916147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-352
               
               
               Cow position:chr11:34032099-34032328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr11:6202543-6202319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:149-354
               
               
               Cow position:chr11:8988132-8988357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:149-354
               
               
               Cow position:chr11:36238877-36238655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr11:30476098-30475874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:149-355
               
               
               Cow position:chr11:76114742-76114525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 46

               
               
               Conread position:150-349
               
               
               Cow position:chr11:372611-372818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:150-352
               
               
               Cow position:chr11:12804200-12804405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 21

               
               
               Conread position:150-352
               
               
               Cow position:chr11:63482332-63482552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):84, 9

               
               
               Conread position:150-354
               
               
               Cow position:chr11:2832593-2832798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):78, 131

               
               
               Conread position:150-355
               
               
               Cow position:chr11:8544919-8545141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):81, 122

               
               
               Conread position:150-355
               
               
               Cow position:chr11:18086249-18086463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 172

               
               
               Conread position:151-250
               
               
               Cow position:chr11:46452233-46452135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:151-352
               
               
               Cow position:chr11:26483803-26483588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:152-235
               
               
               Cow position:chr11:63199629-63199546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-352
               
               
               Cow position:chr11:23232423-23232642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:152-355
               
               
               Cow position:chr11:80530455-80530239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:153-355
               
               
               Cow position:chr11:377546-377773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:153-355
               
               
               Cow position:chr11:64867925-64868144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:153-355
               
               
               Cow position:chr11:86720322-86720541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:154-247
               
               
               Cow position:chr11:32782789-32782885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:155-354
               
               
               Cow position:chr11:2281231-2281417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):98, 63

               
               
               Conread position:155-355
               
               
               Cow position:chr11:30879761-30879554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 167

               
               
               Conread position:156-351
               
               
               Cow position:chr11:67246878-67246667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:157-355
               
               
               Cow position:chr11:36987041-36986837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):87, 142

               
               
               Conread position:163-354
               
               
               Cow position:chr11:35363567-35363370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:169-355
               
               
               Cow position:chr11:48383600-48383400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:180-349
               
               
               Cow position:chr11:70273375-70273182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:184-353
               
               
               Cow position:chr11:35791757-35791939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 109

               
               
               Conread position:203-355
               
               
               Cow position:chr11:45898024-45898182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:212-353
               
               
               Cow position:chr11:48932565-48932712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:225-355
               
               
               Cow position:chr11:23218558-23218427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:226-353
               
               
               Cow position:chr11:70745529-70745654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:229-353
               
               
               Cow position:chr11:81174891-81174763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:229-355
               
               
               Cow position:chr11:56349016-56349144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:230-349
               
               
               Cow position:chr11:85764939-85764815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:232-351
               
               
               Cow position:chr11:32610000-32609877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-352
               
               
               Cow position:chr11:21438210-21438089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr11:36672042-36672171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr11:48042033-48042165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr11:51626966-51626835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr11:62979492-62979359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr11:83196499-83196369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:233-349
               
               
               Cow position:chr11:18341042-18341164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:234-355
               
               
               Cow position:chr11:21427993-21428122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:235-355
               
               
               Cow position:chr11:68570670-68570795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:237-353
               
               
               Cow position:chr11:77241365-77241243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:239-355
               
               
               Cow position:chr11:26535767-26535647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:240-351
               
               
               Cow position:chr11:41577026-41577139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr11:47586356-47586477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:240-355
               
               
               Cow position:chr11:63516821-63516697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:244-355
               
               
               Cow position:chr11:62808662-62808778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:250-355
               
               
               Cow position:chr11:62155603-62155497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:272-355
               
               
               Cow position:chr11:5211785-5211868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:76
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:277-355
               
               
               Cow position:chr11:43914162-43914084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:72
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:70-347
               
               
               Cow position:chr12:29674981-29675279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:71-353
               
               
               Cow position:chr12:19714886-19715189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:73-248
               
               
               Cow position:chr12:48579006-48578822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 101

               
               
               Conread position:75-240
               
               
               Cow position:chr12:3039890-3039717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:75-247
               
               
               Cow position:chr12:4954990-4954805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 123

               
               
               Conread position:75-327
               
               
               Cow position:chr12:18123835-18123558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:75-355
               
               
               Cow position:chr12:25804976-25805260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 197

               
               
               Conread position:76-230
               
               
               Cow position:chr12:22048093-22047919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:76-250
               
               
               Cow position:chr12:17879137-17879322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 144

               
               
               Conread position:77-235
               
               
               Cow position:chr12:39465732-39465572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 76

               
               
               Conread position:78-351
               
               
               Cow position:chr12:27563213-27563523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):44, 259

               
               
               Conread position:78-355
               
               
               Cow position:chr12:24023645-24023945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 218

               
               
               Conread position:81-238
               
               
               Cow position:chr12:25417415-25417580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 117

               
               
               Conread position:81-242
               
               
               Cow position:chr12:41684668-41684493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:81-307
               
               
               Cow position:chr12:42286127-42285866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-346
               
               
               Cow position:chr12:39339873-39339601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):41, 165

               
               
               Conread position:81-355
               
               
               Cow position:chr12:15050462-15050767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):37, 124

               
               
               Conread position:82-231
               
               
               Cow position:chr12:24391464-24391316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):70, 26

               
               
               Conread position:82-248
               
               
               Cow position:chr12:26749788-26749971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):33, 178

               
               
               Conread position:83-208
               
               
               Cow position:chr12:27332009-27332135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):35, 42

               
               
               Conread position:83-227
               
               
               Cow position:chr12:9130064-9129910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 135

               
               
               Conread position:83-227
               
               
               Cow position:chr12:14396630-14396784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-229
               
               
               Cow position:chr12:44693360-44693214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 85

               
               
               Conread position:83-229
               
               
               Cow position:chr12:44822443-44822292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:83-231
               
               
               Cow position:chr12:14223144-14222978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr12:35469290-35469450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:83-240
               
               
               Cow position:chr12:34465857-34466016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:83-247
               
               
               Cow position:chr12:17250665-17250493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:83-247
               
               
               Cow position:chr12:42951530-42951706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 167

               
               
               Conread position:83-252
               
               
               Cow position:chr12:24397004-24397188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 141

               
               
               Conread position:83-325
               
               
               Cow position:chr12:18103456-18103731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-352
               
               
               Cow position:chr12:25989054-25989340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):32, 111

               
               
               Conread position:83-353
               
               
               Cow position:chr12:4769080-4768779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr12:9229355-9229630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):150, 192

               
               
               Conread position:83-353
               
               
               Cow position:chr12:34161564-34161268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:83-354
               
               
               Cow position:chr12:15938109-15938415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 137

               
               
               Conread position:83-354
               
               
               Cow position:chr12:20479183-20479472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:83-354
               
               
               Cow position:chr12:38774084-38774388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 211

               
               
               Conread position:83-355
               
               
               Cow position:chr12:4720105-4719796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):39, 253

               
               
               Conread position:83-355
               
               
               Cow position:chr12:26868655-26868944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):69, 206

               
               
               Conread position:83-355
               
               
               Cow position:chr12:30210631-30210332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:85-247
               
               
               Cow position:chr12:6666720-6666552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):37, 159

               
               
               Conread position:85-248
               
               
               Cow position:chr12:43855049-43854875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:87-238
               
               
               Cow position:chr12:22859607-22859453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:87-247
               
               
               Cow position:chr12:45782380-45782208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:87-248
               
               
               Cow position:chr12:11057023-11056854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:87-253
               
               
               Cow position:chr12:40157871-40158046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):35, 133

               
               
               Conread position:87-334
               
               
               Cow position:chr12:37008553-37008833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-351
               
               
               Cow position:chr12:11587926-11587627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:87-354
               
               
               Cow position:chr12:3623848-3623545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr12:24639785-24639504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:89-249
               
               
               Cow position:chr12:24116218-24116385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:89-353
               
               
               Cow position:chr12:48415365-48415668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):33, 255

               
               
               Conread position:93-248
               
               
               Cow position:chr12:44542414-44542247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 162

               
               
               Conread position:95-240
               
               
               Cow position:chr12:3616132-3615985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:95-355
               
               
               Cow position:chr12:30194842-30194557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:98-353
               
               
               Cow position:chr12:31429446-31429718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 28

               
               
               Conread position:108-271
               
               
               Cow position:chr12:22469631-22469469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):145, 22

               
               
               Conread position:112-353
               
               
               Cow position:chr12:41581225-41580970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:115-259
               
               
               Cow position:chr12:3879868-3880010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:119-240
               
               
               Cow position:chr12:26147062-26147182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:121-354
               
               
               Cow position:chr12:29779808-29780048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):112, 24

               
               
               Conread position:122-355
               
               
               Cow position:chr12:2804969-2805194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 43

               
               
               Conread position:123-353
               
               
               Cow position:chr12:32051612-32051365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 14

               
               
               Conread position:123-355
               
               
               Cow position:chr12:8943118-8943368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:130-355
               
               
               Cow position:chr12:27562746-27562979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:133-355
               
               
               Cow position:chr12:3599665-3599902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:137-248
               
               
               Cow position:chr12:7920333-7920223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr12:42143250-42143141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr12:42181040-42181148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:137-307
               
               
               Cow position:chr12:21780252-21780062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:137-321
               
               
               Cow position:chr12:31269244-31269034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:137-328
               
               
               Cow position:chr12:24222430-24222641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 182

               
               
               Conread position:137-350
               
               
               Cow position:chr12:4866908-4866677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr12:7000514-7000754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 50

               
               
               Conread position:137-355
               
               
               Cow position:chr12:25321005-25320772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):71, 62

               
               
               Conread position:137-355
               
               
               Cow position:chr12:29995374-29995610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:137-355
               
               
               Cow position:chr12:42698155-42698373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):112, 143

               
               
               Conread position:143-349
               
               
               Cow position:chr12:7110282-7110056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr12:39149968-39150055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:77
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr12:12699557-12699661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr12:7457461-7457564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-327
               
               
               Cow position:chr12:31959963-31959765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-330
               
               
               Cow position:chr12:4093688-4093874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 135

               
               
               Conread position:144-333
               
               
               Cow position:chr12:25193122-25192924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 176

               
               
               Conread position:144-338
               
               
               Cow position:chr12:39382682-39382478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:144-339
               
               
               Cow position:chr12:36012546-36012749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):109, 81

               
               
               Conread position:144-347
               
               
               Cow position:chr12:22485890-22485677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):80, 185

               
               
               Conread position:144-349
               
               
               Cow position:chr12:15163223-15163006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):89, 148

               
               
               Conread position:144-353
               
               
               Cow position:chr12:3995015-3994808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr12:23916926-23916695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr12:11109838-11109618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):97, 218

               
               
               Conread position:144-355
               
               
               Cow position:chr12:5459333-5459116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):89, 178

               
               
               Conread position:144-355
               
               
               Cow position:chr12:7978121-7977893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 190

               
               
               Conread position:144-355
               
               
               Cow position:chr12:13988453-13988221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr12:15173907-15173675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):89, 176

               
               
               Conread position:144-355
               
               
               Cow position:chr12:26782955-26782738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 174

               
               
               Conread position:144-355
               
               
               Cow position:chr12:30661868-30662097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:144-355
               
               
               Cow position:chr12:37993648-37993872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):83, 147

               
               
               Conread position:144-355
               
               
               Cow position:chr12:41159671-41159445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 174

               
               
               Conread position:144-355
               
               
               Cow position:chr12:42254750-42254517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:144-355
               
               
               Cow position:chr12:42967078-42966848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:144-355
               
               
               Cow position:chr12:44595726-44595961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 27

               
               
               Conread position:144-355
               
               
               Cow position:chr12:45014765-45014561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:145-271
               
               
               Cow position:chr12:10834050-10834183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr12:25177515-25177733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:146-231
               
               
               Cow position:chr12:22323192-22323277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:75
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-240
               
               
               Cow position:chr12:11106499-11106593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-248
               
               
               Cow position:chr12:1344827-1344726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:147-231
               
               
               Cow position:chr12:16386376-16386460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:74
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:147-355
               
               
               Cow position:chr12:35368723-35368491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:149-280
               
               
               Cow position:chr12:23764563-23764425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr12:6410655-6410882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 191

               
               
               Conread position:150-352
               
               
               Cow position:chr12:30438314-30438098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 10

               
               
               Conread position:150-354
               
               
               Cow position:chr12:4596542-4596316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:150-354
               
               
               Cow position:chr12:34007378-34007158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:150-355
               
               
               Cow position:chr12:38010009-38010209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:151-355
               
               
               Cow position:chr12:4085969-4085766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):121, 81

               
               
               Conread position:153-344
               
               
               Cow position:chr12:30590842-30590628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:153-351
               
               
               Cow position:chr12:7311456-7311250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:153-355
               
               
               Cow position:chr12:28582434-28582654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:154-248
               
               
               Cow position:chr12:4797374-4797281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:154-248
               
               
               Cow position:chr12:22752699-22752604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:154-355
               
               
               Cow position:chr12:24211481-24211269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 185

               
               
               Conread position:155-355
               
               
               Cow position:chr12:44622421-44622204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:161-355
               
               
               Cow position:chr12:9413741-9413932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):80, 112

               
               
               Conread position:163-344
               
               
               Cow position:chr12:17717127-17716939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:164-353
               
               
               Cow position:chr12:8868818-8869025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:175-355
               
               
               Cow position:chr12:25452394-25452597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):58, 173

               
               
               Conread position:178-353
               
               
               Cow position:chr12:5658027-5658217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):55, 115

               
               
               Conread position:226-349
               
               
               Cow position:chr12:24107558-24107689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:232-351
               
               
               Cow position:chr12:11583371-11583254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 97

               
               
               Conread position:240-353
               
               
               Cow position:chr12:12300888-12300773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr12:18021565-18021445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr12:20326745-20326624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:242-350
               
               
               Cow position:chr12:20284086-20283981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 36

               
               
               Conread position:259-353
               
               
               Cow position:chr12:40270147-40270240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:272-353
               
               
               Cow position:chr12:3039439-3039358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:82
               
               
               Alignm identity:75
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-253
               
               
               Cow position:chr13:21288312-21288114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 188

               
               
               Conread position:71-243
               
               
               Cow position:chr13:8393107-8392935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):74, 51

               
               
               Conread position:71-353
               
               
               Cow position:chr13:16343485-16343781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:72-249
               
               
               Cow position:chr13:50583044-50582857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):16, 181

               
               
               Conread position:72-294
               
               
               Cow position:chr13:55765401-55765148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 114

               
               
               Conread position:72-353
               
               
               Cow position:chr13:13533886-13533575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 121

               
               
               Conread position:73-354
               
               
               Cow position:chr13:17745035-17745335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 281

               
               
               Conread position:74-230
               
               
               Cow position:chr13:48373538-48373369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):48, 142

               
               
               Conread position:74-235
               
               
               Cow position:chr13:21188160-21188322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:74-253
               
               
               Cow position:chr13:37555093-37554903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 171

               
               
               Conread position:74-270
               
               
               Cow position:chr13:53619778-53619994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:74-347
               
               
               Cow position:chr13:28139358-28139658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 114

               
               
               Conread position:74-355
               
               
               Cow position:chr13:151747-152051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):9, 250

               
               
               Conread position:74-355
               
               
               Cow position:chr13:15041698-15041377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:75-306
               
               
               Cow position:chr13:8232798-8233041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):79, 8

               
               
               Conread position:75-355
               
               
               Cow position:chr13:11321822-11321519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:75-355
               
               
               Cow position:chr13:16038506-16038196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:75-355
               
               
               Cow position:chr13:19223429-19223742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:75-355
               
               
               Cow position:chr13:37593167-37592846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:76-227
               
               
               Cow position:chr13:30148775-30148617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):63, 41

               
               
               Conread position:76-245
               
               
               Cow position:chr13:22345495-22345308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:76-248
               
               
               Cow position:chr13:29802407-29802581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):47, 169

               
               
               Conread position:76-316
               
               
               Cow position:chr13:12925576-12925831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:76-352
               
               
               Cow position:chr13:4665070-4664772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:76-355
               
               
               Cow position:chr13:10989295-10988979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:77-354
               
               
               Cow position:chr13:21235887-21235591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):37, 284

               
               
               Conread position:77-355
               
               
               Cow position:chr13:45074123-45073829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:78-248
               
               
               Cow position:chr13:49356267-49356083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):44, 179

               
               
               Conread position:78-355
               
               
               Cow position:chr13:5758550-5758244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:80-221
               
               
               Cow position:chr13:34533145-34532992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:80-355
               
               
               Cow position:chr13:47964389-47964100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):16, 278

               
               
               Conread position:81-228
               
               
               Cow position:chr13:50646844-50646684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-231
               
               
               Cow position:chr13:16163378-16163532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:81-231
               
               
               Cow position:chr13:47538365-47538210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:81-232
               
               
               Cow position:chr13:21277672-21277516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:81-351
               
               
               Cow position:chr13:57770199-57769918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):6, 164

               
               
               Conread position:81-354
               
               
               Cow position:chr13:5175384-5175657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):39, 128

               
               
               Conread position:81-355
               
               
               Cow position:chr13:20378532-20378239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:81-355
               
               
               Cow position:chr13:29831643-29831340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:82-231
               
               
               Cow position:chr13:20784380-20784540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:82-235
               
               
               Cow position:chr13:20473889-20473728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:82-238
               
               
               Cow position:chr13:37946600-37946432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-354
               
               
               Cow position:chr13:25604819-25604534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:83-222
               
               
               Cow position:chr13:14782135-14782283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:83-223
               
               
               Cow position:chr13:53847332-53847179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-227
               
               
               Cow position:chr13:5659978-5659821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-227
               
               
               Cow position:chr13:9551150-9551307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr13:10522726-10522886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr13:11942388-11942229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr13:53717649-53717507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr13:14063734-14063567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-247
               
               
               Cow position:chr13:52459686-52459515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:83-248
               
               
               Cow position:chr13:17813258-17813437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):39, 174

               
               
               Conread position:83-248
               
               
               Cow position:chr13:37030136-37030310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-249
               
               
               Cow position:chr13:34300061-34299892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:83-250
               
               
               Cow position:chr13:24715036-24715210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-252
               
               
               Cow position:chr13:62007894-62008079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-253
               
               
               Cow position:chr13:6980712-6980890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 159

               
               
               Conread position:83-253
               
               
               Cow position:chr13:7046667-7046842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 165

               
               
               Conread position:83-253
               
               
               Cow position:chr13:22085945-22085775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 67

               
               
               Conread position:83-255
               
               
               Cow position:chr13:56432035-56431850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:83-272
               
               
               Cow position:chr13:15060440-15060633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 61

               
               
               Conread position:83-280
               
               
               Cow position:chr13:28536534-28536308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 218

               
               
               Conread position:83-307
               
               
               Cow position:chr13:25561417-25561652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-331
               
               
               Cow position:chr13:52055806-52055521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 253

               
               
               Conread position:83-352
               
               
               Cow position:chr13:2192524-2192804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 146

               
               
               Conread position:83-352
               
               
               Cow position:chr13:15162849-15162565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):39, 246

               
               
               Conread position:83-352
               
               
               Cow position:chr13:19188101-19188394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:83-352
               
               
               Cow position:chr13:23512167-23512460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:83-352
               
               
               Cow position:chr13:45593710-45593996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):39, 153

               
               
               Conread position:83-352
               
               
               Cow position:chr13:49457489-49457767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:83-352
               
               
               Cow position:chr13:56035070-56034765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr13:43139412-43139132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:83-353
               
               
               Cow position:chr13:51940533-51940831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr13:7149712-7149444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:83-355
               
               
               Cow position:chr13:4552613-4552898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:83-355
               
               
               Cow position:chr13:5263492-5263193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 258

               
               
               Conread position:83-355
               
               
               Cow position:chr13:5911104-5910803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:83-355
               
               
               Cow position:chr13:9975281-9974979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr13:14543922-14544215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr13:14576002-14576303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):39, 238

               
               
               Conread position:83-355
               
               
               Cow position:chr13:15193102-15192793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr13:18166519-18166830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr13:20579705-20580002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):40, 123

               
               
               Conread position:83-355
               
               
               Cow position:chr13:26480416-26480116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):35, 292

               
               
               Conread position:83-355
               
               
               Cow position:chr13:34261022-34261331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr13:37775419-37775133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:83-355
               
               
               Cow position:chr13:42200407-42200715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):40, 282

               
               
               Conread position:83-355
               
               
               Cow position:chr13:52749676-52749382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):56, 264

               
               
               Conread position:84-230
               
               
               Cow position:chr13:24796671-24796827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:84-231
               
               
               Cow position:chr13:41155267-41155117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:84-235
               
               
               Cow position:chr13:16790013-16790163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:84-240
               
               
               Cow position:chr13:21242288-21242125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:84-353
               
               
               Cow position:chr13:21155670-21155398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:84-355
               
               
               Cow position:chr13:24753681-24753977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 254

               
               
               Conread position:86-248
               
               
               Cow position:chr13:9124718-9124890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:86-316
               
               
               Cow position:chr13:8659865-8660105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:87-248
               
               
               Cow position:chr13:15144040-15143875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:87-344
               
               
               Cow position:chr13:10845409-10845681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:87-353
               
               
               Cow position:chr13:25926579-25926885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr13:1568725-1569020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:87-355
               
               
               Cow position:chr13:6973953-6974257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:87-355
               
               
               Cow position:chr13:40722893-40722611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):146, 28

               
               
               Conread position:87-355
               
               
               Cow position:chr13:49795829-49796115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:88-355
               
               
               Cow position:chr13:3003278-3003538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:89-352
               
               
               Cow position:chr13:11260070-11260362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 269

               
               
               Conread position:92-351
               
               
               Cow position:chr13:48375819-48375552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:93-231
               
               
               Cow position:chr13:43292416-43292275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:93-349
               
               
               Cow position:chr13:20137632-20137915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:94-230
               
               
               Cow position:chr13:4404332-4404480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:94-273
               
               
               Cow position:chr13:47193203-47193389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:95-242
               
               
               Cow position:chr13:57446314-57446157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:103-248
               
               
               Cow position:chr13:11643760-11643905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:109-252
               
               
               Cow position:chr13:20519889-20520033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:109-351
               
               
               Cow position:chr13:23270372-23270119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:113-353
               
               
               Cow position:chr13:26742980-26743220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:116-355
               
               
               Cow position:chr13:48252127-48251889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:120-348
               
               
               Cow position:chr13:17110065-17110309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 228

               
               
               Conread position:130-336
               
               
               Cow position:chr13:38873095-38872874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:132-231
               
               
               Cow position:chr13:37517324-37517227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:133-349
               
               
               Cow position:chr13:18835054-18835283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:136-355
               
               
               Cow position:chr13:37381658-37381901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:137-246
               
               
               Cow position:chr13:15808624-15808734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 49

               
               
               Conread position:137-248
               
               
               Cow position:chr13:21294931-21295041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr13:24110336-24110446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-252
               
               
               Cow position:chr13:10925063-10924949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 47

               
               
               Conread position:137-253
               
               
               Cow position:chr13:42640242-42640357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-352
               
               
               Cow position:chr13:29908095-29907890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:137-353
               
               
               Cow position:chr13:7076113-7076352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 211

               
               
               Conread position:137-354
               
               
               Cow position:chr13:3315819-3315582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr13:2404618-2404836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:137-355
               
               
               Cow position:chr13:26369380-26369622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):94, 78

               
               
               Conread position:144-227
               
               
               Cow position:chr13:41607363-41607281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:75
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr13:585007-584920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-238
               
               
               Cow position:chr13:27419213-27419119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-238
               
               
               Cow position:chr13:50768462-50768556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-246
               
               
               Cow position:chr13:17135351-17135247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr13:13796948-13796846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr13:37751203-37751100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):97, 85

               
               
               Conread position:144-248
               
               
               Cow position:chr13:11146920-11147023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr13:25521052-25520949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr13:34873452-34873555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr13:36666411-36666308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr13:39398514-39398617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr13:48126971-48127074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-253
               
               
               Cow position:chr13:6616896-6616788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-253
               
               
               Cow position:chr13:6975982-6975874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-273
               
               
               Cow position:chr13:18062031-18062159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):110, 77

               
               
               Conread position:144-273
               
               
               Cow position:chr13:56958844-56958976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:144-313
               
               
               Cow position:chr13:37503720-37503526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 79

               
               
               Conread position:144-320
               
               
               Cow position:chr13:17837814-17838011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:144-349
               
               
               Cow position:chr13:3211412-3211642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-349
               
               
               Cow position:chr13:37603477-37603262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:144-352
               
               
               Cow position:chr13:12547045-12546817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:144-352
               
               
               Cow position:chr13:18994989-18995221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:144-352
               
               
               Cow position:chr13:39423691-39423913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:144-352
               
               
               Cow position:chr13:45355175-45355371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):108, 75

               
               
               Conread position:144-353
               
               
               Cow position:chr13:8667482-8667708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr13:14967348-14967123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:144-353
               
               
               Cow position:chr13:18929392-18929622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):76, 176

               
               
               Conread position:144-353
               
               
               Cow position:chr13:41616183-41615988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr13:620381-620165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 39

               
               
               Conread position:144-354
               
               
               Cow position:chr13:9900022-9900244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):86, 48

               
               
               Conread position:144-355
               
               
               Cow position:chr13:2413892-2414125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):16, 65

               
               
               Conread position:144-355
               
               
               Cow position:chr13:11096045-11096270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:144-355
               
               
               Cow position:chr13:14927125-14927332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr13:15349382-15349165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:144-355
               
               
               Cow position:chr13:47186097-47186321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):69, 53

               
               
               Conread position:144-355
               
               
               Cow position:chr13:60509257-60509024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 186

               
               
               Conread position:145-231
               
               
               Cow position:chr13:37069209-37069295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-338
               
               
               Cow position:chr13:17823086-17822871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:145-354
               
               
               Cow position:chr13:10220825-10221041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 189

               
               
               Conread position:146-352
               
               
               Cow position:chr13:5713180-5713394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):84, 48

               
               
               Conread position:146-355
               
               
               Cow position:chr13:8362878-8362659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):88, 127

               
               
               Conread position:146-355
               
               
               Cow position:chr13:34556449-34556240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):104, 94

               
               
               Conread position:148-248
               
               
               Cow position:chr13:6113659-6113560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:148-351
               
               
               Cow position:chr13:26365772-26365974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):106, 112

               
               
               Conread position:148-352
               
               
               Cow position:chr13:52284684-52284900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):85, 5

               
               
               Conread position:148-352
               
               
               Cow position:chr13:54344648-54344865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:149-352
               
               
               Cow position:chr13:6389264-6389474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):95, 70

               
               
               Conread position:149-353
               
               
               Cow position:chr13:13765658-13765879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):87, 63

               
               
               Conread position:149-355
               
               
               Cow position:chr13:15282066-15281841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):70, 9

               
               
               Conread position:149-355
               
               
               Cow position:chr13:20650114-20649887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:149-355
               
               
               Cow position:chr13:45725754-45725992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:150-264
               
               
               Cow position:chr13:29665890-29666006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 101

               
               
               Conread position:150-355
               
               
               Cow position:chr13:11591620-11591842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):55, 70

               
               
               Conread position:150-355
               
               
               Cow position:chr13:24230083-24230306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:151-355
               
               
               Cow position:chr13:11060857-11061082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):57, 164

               
               
               Conread position:152-354
               
               
               Cow position:chr13:11201912-11202121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 163

               
               
               Conread position:153-354
               
               
               Cow position:chr13:30026001-30026208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:154-351
               
               
               Cow position:chr13:51822000-51821797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 136

               
               
               Conread position:161-354
               
               
               Cow position:chr13:46736095-46736308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:162-353
               
               
               Cow position:chr13:61990445-61990242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:165-353
               
               
               Cow position:chr13:17622173-17622376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 7

               
               
               Conread position:166-347
               
               
               Cow position:chr13:37436328-37436506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):108, 66

               
               
               Conread position:180-355
               
               
               Cow position:chr13:18243761-18243958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:186-355
               
               
               Cow position:chr13:16711551-16711723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 36

               
               
               Conread position:225-355
               
               
               Cow position:chr13:53070210-53070074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:229-351
               
               
               Cow position:chr13:2774094-2774220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr13:28696049-28696177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr13:4420308-4420439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr13:15869091-15869217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:232-355
               
               
               Cow position:chr13:20128632-20128762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr13:46181758-46181888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr13:50713176-50713297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:233-355
               
               
               Cow position:chr13:61170751-61170624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:234-355
               
               
               Cow position:chr13:16024557-16024687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:235-352
               
               
               Cow position:chr13:54093714-54093838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:235-355
               
               
               Cow position:chr13:322816-322687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):18, 94

               
               
               Conread position:235-355
               
               
               Cow position:chr13:20509709-20509828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):17, 85

               
               
               Conread position:238-355
               
               
               Cow position:chr13:55947747-55947869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:239-355
               
               
               Cow position:chr13:13809590-13809464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr13:20041996-20041871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:241-355
               
               
               Cow position:chr13:22030071-22030186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:244-355
               
               
               Cow position:chr13:563165-563046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:273-355
               
               
               Cow position:chr13:22115720-22115803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:76
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:279-355
               
               
               Cow position:chr13:37517116-37517040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:77
               
               
               Alignm identity:70
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-240
               
               
               Cow position:chr14:24785500-24785674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:72-231
               
               
               Cow position:chr14:16237678-16237505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:73-251
               
               
               Cow position:chr14:45167282-45167100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:73-352
               
               
               Cow position:chr14:11641705-11641419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 180

               
               
               Conread position:73-355
               
               
               Cow position:chr14:33774191-33773902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:74-248
               
               
               Cow position:chr14:11079288-11079475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):13, 182

               
               
               Conread position:74-253
               
               
               Cow position:chr14:24845810-24845997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:75-248
               
               
               Cow position:chr14:38168538-38168715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:76-248
               
               
               Cow position:chr14:11643410-11643225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:76-323
               
               
               Cow position:chr14:36443181-36442895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:76-350
               
               
               Cow position:chr14:2038950-2038666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):165, 33

               
               
               Conread position:76-353
               
               
               Cow position:chr14:20667170-20666872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 218

               
               
               Conread position:76-355
               
               
               Cow position:chr14:8949488-8949768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:76-355
               
               
               Cow position:chr14:18941453-18941149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 151

               
               
               Conread position:76-355
               
               
               Cow position:chr14:29592880-29592570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):46, 184

               
               
               Conread position:77-355
               
               
               Cow position:chr14:35503200-35503518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:78-354
               
               
               Cow position:chr14:12512053-12511749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 141

               
               
               Conread position:78-355
               
               
               Cow position:chr14:12036991-12036692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 178

               
               
               Conread position:80-237
               
               
               Cow position:chr14:40212108-40212266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 97

               
               
               Conread position:81-235
               
               
               Cow position:chr14:41838018-41837861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr14:15428319-15428501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 179

               
               
               Conread position:81-248
               
               
               Cow position:chr14:33328806-33328982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 166

               
               
               Conread position:81-276
               
               
               Cow position:chr14:36425563-36425343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-354
               
               
               Cow position:chr14:12244541-12244229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-355
               
               
               Cow position:chr14:2975245-2974943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 135

               
               
               Conread position:82-354
               
               
               Cow position:chr14:10858282-10858584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 93

               
               
               Conread position:82-355
               
               
               Cow position:chr14:8541365-8541059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:83-215
               
               
               Cow position:chr14:5044519-5044662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:83-225
               
               
               Cow position:chr14:2712163-2712021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:83-225
               
               
               Cow position:chr14:27364420-27364581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-227
               
               
               Cow position:chr14:41623169-41623321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 128

               
               
               Conread position:83-228
               
               
               Cow position:chr14:16256617-16256763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:83-230
               
               
               Cow position:chr14:21593158-21592997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:83-230
               
               
               Cow position:chr14:35421244-35421076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr14:109635-109483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:83-232
               
               
               Cow position:chr14:8591002-8590840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-232
               
               
               Cow position:chr14:25912497-25912659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr14:44084633-44084478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-240
               
               
               Cow position:chr14:20245325-20245153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr14:7127703-7127881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:83-253
               
               
               Cow position:chr14:13845837-13846013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:83-253
               
               
               Cow position:chr14:27847199-27847379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):28, 147

               
               
               Conread position:83-273
               
               
               Cow position:chr14:37479221-37479416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:83-301
               
               
               Cow position:chr14:36775506-36775725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 154

               
               
               Conread position:83-323
               
               
               Cow position:chr14:41267880-41267629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 168

               
               
               Conread position:83-349
               
               
               Cow position:chr14:20321226-20320943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:83-349
               
               
               Cow position:chr14:30661867-30662134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):147, 32

               
               
               Conread position:83-353
               
               
               Cow position:chr14:41253136-41252837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-353
               
               
               Cow position:chr14:43046019-43046300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 104

               
               
               Conread position:83-354
               
               
               Cow position:chr14:12961441-12961721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):29, 243

               
               
               Conread position:83-354
               
               
               Cow position:chr14:13809797-13810090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-354
               
               
               Cow position:chr14:21284496-21284776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 119

               
               
               Conread position:83-354
               
               
               Cow position:chr14:49022037-49021750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:83-355
               
               
               Cow position:chr14:10721859-10721575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:83-355
               
               
               Cow position:chr14:17755419-17755714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr14:23424107-23424411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):12, 112

               
               
               Conread position:83-355
               
               
               Cow position:chr14:23442868-23443172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):12, 112

               
               
               Conread position:83-355
               
               
               Cow position:chr14:33247577-33247280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 253

               
               
               Conread position:83-355
               
               
               Cow position:chr14:40230792-40230485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:84-244
               
               
               Cow position:chr14:46114295-46114133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:84-353
               
               
               Cow position:chr14:40754400-40754092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:86-351
               
               
               Cow position:chr14:11470304-11469998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:87-230
               
               
               Cow position:chr14:14580690-14580834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:87-230
               
               
               Cow position:chr14:39037086-39037230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:87-230
               
               
               Cow position:chr14:40806751-40806605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:87-248
               
               
               Cow position:chr14:18270207-18270384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:87-248
               
               
               Cow position:chr14:18309453-18309282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-248
               
               
               Cow position:chr14:19349695-19349859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 64

               
               
               Conread position:87-250
               
               
               Cow position:chr14:19487160-19487320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:87-250
               
               
               Cow position:chr14:30023353-30023172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:87-351
               
               
               Cow position:chr14:8101649-8101939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:88-355
               
               
               Cow position:chr14:35498646-35498348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:89-221
               
               
               Cow position:chr14:24991346-24991483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 93

               
               
               Conread position:96-355
               
               
               Cow position:chr14:7959654-7959922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 231

               
               
               Conread position:97-228
               
               
               Cow position:chr14:24387308-24387445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:98-353
               
               
               Cow position:chr14:1859736-1859464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:99-351
               
               
               Cow position:chr14:47673006-47672735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:104-323
               
               
               Cow position:chr14:40875875-40876105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 148

               
               
               Conread position:121-250
               
               
               Cow position:chr14:10691730-10691603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:121-349
               
               
               Cow position:chr14:41127792-41128042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:123-240
               
               
               Cow position:chr14:27303558-27303674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:128-354
               
               
               Cow position:chr14:46997945-46998198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:132-230
               
               
               Cow position:chr14:36536402-36536304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:133-354
               
               
               Cow position:chr14:6175508-6175735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):106, 15

               
               
               Conread position:135-248
               
               
               Cow position:chr14:26456284-26456396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:136-355
               
               
               Cow position:chr14:20600297-20600539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 190

               
               
               Conread position:137-248
               
               
               Cow position:chr14:5668205-5668093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:137-350
               
               
               Cow position:chr14:42436938-42437174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-353
               
               
               Cow position:chr14:7036444-7036203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr14:16344233-16344015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):136, 95

               
               
               Conread position:137-355
               
               
               Cow position:chr14:19129419-19129663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr14:19740330-19740117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):116, 16

               
               
               Conread position:144-231
               
               
               Cow position:chr14:28924088-28924175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:77
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr14:8083119-8083214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr14:30431648-30431552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr14:34399878-34399782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr14:34449051-34448955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr14:37436790-37436687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-250
               
               
               Cow position:chr14:4227302-4227197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-252
               
               
               Cow position:chr14:4209426-4209535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-273
               
               
               Cow position:chr14:40952191-40952323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-340
               
               
               Cow position:chr14:1708736-1708518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 177

               
               
               Conread position:144-352
               
               
               Cow position:chr14:14316807-14317032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):93, 215

               
               
               Conread position:144-352
               
               
               Cow position:chr14:42419353-42419124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 214

               
               
               Conread position:144-353
               
               
               Cow position:chr14:32553386-32553158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr14:38144187-38143959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):89, 204

               
               
               Conread position:144-354
               
               
               Cow position:chr14:20712767-20712537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr14:24981379-24981607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr14:14466536-14466323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):89, 140

               
               
               Conread position:144-355
               
               
               Cow position:chr14:16032932-16033162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:144-355
               
               
               Cow position:chr14:17563847-17564060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):89, 124

               
               
               Conread position:144-355
               
               
               Cow position:chr14:33830222-33830450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr14:44742449-44742231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:145-352
               
               
               Cow position:chr14:28987614-28987842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 203

               
               
               Conread position:145-355
               
               
               Cow position:chr14:28091040-28090822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):87, 63

               
               
               Conread position:148-240
               
               
               Cow position:chr14:21406786-21406694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:78
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:148-355
               
               
               Cow position:chr14:38548727-38548946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):37, 105

               
               
               Conread position:149-352
               
               
               Cow position:chr14:38747603-38747817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr14:19863509-19863285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):29, 211

               
               
               Conread position:149-354
               
               
               Cow position:chr14:27275088-27275314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr14:6226688-6226473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:150-353
               
               
               Cow position:chr14:11056804-11056588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr14:21964063-21964272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 87

               
               
               Conread position:151-351
               
               
               Cow position:chr14:9539258-9539044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:151-353
               
               
               Cow position:chr14:18763506-18763293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):82, 48

               
               
               Conread position:153-353
               
               
               Cow position:chr14:45605027-45605243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 50

               
               
               Conread position:153-355
               
               
               Cow position:chr14:37447534-37447316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):87, 167

               
               
               Conread position:153-355
               
               
               Cow position:chr14:42246934-42247143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):79, 136

               
               
               Conread position:154-355
               
               
               Cow position:chr14:33309573-33309354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):75, 206

               
               
               Conread position:155-353
               
               
               Cow position:chr14:25779033-25779243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):67, 172

               
               
               Conread position:156-353
               
               
               Cow position:chr14:40165357-40165575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:171-355
               
               
               Cow position:chr14:22966703-22966906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:189-349
               
               
               Cow position:chr14:3564249-3564429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:223-353
               
               
               Cow position:chr14:6419288-6419152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:232-348
               
               
               Cow position:chr14:16932103-16932222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr14:14580892-14581019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:232-355
               
               
               Cow position:chr14:33643757-33643629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 122

               
               
               Conread position:232-355
               
               
               Cow position:chr14:33828185-33828314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:277-355
               
               
               Cow position:chr14:35021972-35022050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:73
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-231
               
               
               Cow position:chr15:23278383-23278546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:73-354
               
               
               Cow position:chr15:20290178-20289876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:75-247
               
               
               Cow position:chr15:47773600-47773421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:75-352
               
               
               Cow position:chr15:10246113-10245807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 236

               
               
               Conread position:76-247
               
               
               Cow position:chr15:37749674-37749498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 136

               
               
               Conread position:76-355
               
               
               Cow position:chr15:9106927-9107236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):27, 49

               
               
               Conread position:76-355
               
               
               Cow position:chr15:10088202-10088519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:76-355
               
               
               Cow position:chr15:30981836-30982125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:76-355
               
               
               Cow position:chr15:39326618-39326314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):46, 77

               
               
               Conread position:77-240
               
               
               Cow position:chr15:26851340-26851167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:77-352
               
               
               Cow position:chr15:40798534-40798231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:78-248
               
               
               Cow position:chr15:47844203-47844021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:78-272
               
               
               Cow position:chr15:16415181-16415396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 181

               
               
               Conread position:81-202
               
               
               Cow position:chr15:11635305-11635437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-249
               
               
               Cow position:chr15:20534565-20534379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 180

               
               
               Conread position:81-355
               
               
               Cow position:chr15:2968222-2968535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 295

               
               
               Conread position:82-354
               
               
               Cow position:chr15:4138023-4138332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:82-354
               
               
               Cow position:chr15:36346683-36346959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 152

               
               
               Conread position:83-212
               
               
               Cow position:chr15:3591292-3591429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:83-227
               
               
               Cow position:chr15:19942487-19942643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-229
               
               
               Cow position:chr15:41049567-41049410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:83-230
               
               
               Cow position:chr15:32226969-32226819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:83-235
               
               
               Cow position:chr15:1722951-1722792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-238
               
               
               Cow position:chr15:44119579-44119406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-239
               
               
               Cow position:chr15:51211187-51211351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr15:41321062-41320894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:83-247
               
               
               Cow position:chr15:6037557-6037382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr15:15025057-15025225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:83-248
               
               
               Cow position:chr15:31495328-31495153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:83-248
               
               
               Cow position:chr15:36458289-36458132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr15:38827425-38827254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 166

               
               
               Conread position:83-249
               
               
               Cow position:chr15:2145225-2145065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):147, 56

               
               
               Conread position:83-252
               
               
               Cow position:chr15:14880442-14880265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:83-253
               
               
               Cow position:chr15:19554036-19553849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 177

               
               
               Conread position:83-273
               
               
               Cow position:chr15:43114828-43114615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:83-330
               
               
               Cow position:chr15:41528076-41527802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):69, 269

               
               
               Conread position:83-334
               
               
               Cow position:chr15:52377450-52377706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-340
               
               
               Cow position:chr15:5409004-5408723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):39, 265

               
               
               Conread position:83-352
               
               
               Cow position:chr15:6227286-6226992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 243

               
               
               Conread position:83-352
               
               
               Cow position:chr15:6905429-6905732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-352
               
               
               Cow position:chr15:29810015-29810315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:83-352
               
               
               Cow position:chr15:42142763-42143053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:83-353
               
               
               Cow position:chr15:4418512-4418204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 109

               
               
               Conread position:83-353
               
               
               Cow position:chr15:19771027-19771330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr15:33624861-33625153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr15:13846675-13846392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):39, 197

               
               
               Conread position:83-354
               
               
               Cow position:chr15:26919379-26919076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr15:36643956-36643657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):34, 123

               
               
               Conread position:83-354
               
               
               Cow position:chr15:36773791-36773499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:83-355
               
               
               Cow position:chr15:1857616-1857928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr15:5717609-5717910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):39, 111

               
               
               Conread position:83-355
               
               
               Cow position:chr15:11996138-11995826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:83-355
               
               
               Cow position:chr15:13554273-13554554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):154, 34

               
               
               Conread position:83-355
               
               
               Cow position:chr15:17100814-17100510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr15:20370562-20370256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):39, 200

               
               
               Conread position:83-355
               
               
               Cow position:chr15:20422875-20422579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:83-355
               
               
               Cow position:chr15:26912178-26911876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr15:31929008-31928698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):39, 255

               
               
               Conread position:83-355
               
               
               Cow position:chr15:44658256-44658557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:83-355
               
               
               Cow position:chr15:49230423-49230145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:83-355
               
               
               Cow position:chr15:49739126-49738845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:83-355
               
               
               Cow position:chr15:50322501-50322796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):149, 70

               
               
               Conread position:83-355
               
               
               Cow position:chr15:50664567-50664286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:83-355
               
               
               Cow position:chr15:53037072-53036767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:84-230
               
               
               Cow position:chr15:48052707-48052551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:84-247
               
               
               Cow position:chr15:6129063-6128894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:84-248
               
               
               Cow position:chr15:19920419-19920262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):140, 55

               
               
               Conread position:84-347
               
               
               Cow position:chr15:40082879-40083158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:84-355
               
               
               Cow position:chr15:5235100-5234803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):38, 253

               
               
               Conread position:84-355
               
               
               Cow position:chr15:26573289-26573578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:85-232
               
               
               Cow position:chr15:5710304-5710457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:85-355
               
               
               Cow position:chr15:18720227-18720510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:86-355
               
               
               Cow position:chr15:23798629-23798329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:87-231
               
               
               Cow position:chr15:18941928-18942084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-248
               
               
               Cow position:chr15:31042776-31042937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:87-248
               
               
               Cow position:chr15:36388193-36388361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:87-253
               
               
               Cow position:chr15:12913605-12913423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:87-273
               
               
               Cow position:chr15:20047496-20047681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:87-316
               
               
               Cow position:chr15:30983900-30983662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:87-351
               
               
               Cow position:chr15:30001590-30001881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:87-352
               
               
               Cow position:chr15:37381523-37381819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-353
               
               
               Cow position:chr15:14020391-14020671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:87-353
               
               
               Cow position:chr15:19950380-19950672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):38, 120

               
               
               Conread position:87-353
               
               
               Cow position:chr15:22530975-22531260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 247

               
               
               Conread position:87-355
               
               
               Cow position:chr15:20459417-20459104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr15:27973312-27973017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:87-355
               
               
               Cow position:chr15:49273856-49274152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:92-248
               
               
               Cow position:chr15:16230128-16230292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 159

               
               
               Conread position:94-355
               
               
               Cow position:chr15:21420848-21421139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:95-355
               
               
               Cow position:chr15:1297648-1297937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 265

               
               
               Conread position:97-326
               
               
               Cow position:chr15:34139895-34140157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:103-353
               
               
               Cow position:chr15:34284500-34284213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):19, 247

               
               
               Conread position:116-352
               
               
               Cow position:chr15:50350792-50351024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:133-231
               
               
               Cow position:chr15:34145297-34145201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:137-230
               
               
               Cow position:chr15:48095321-48095417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr15:6046918-6046808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-347
               
               
               Cow position:chr15:9465637-9465870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-352
               
               
               Cow position:chr15:5683110-5683338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 37

               
               
               Conread position:137-353
               
               
               Cow position:chr15:38652640-38652419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 51

               
               
               Conread position:137-355
               
               
               Cow position:chr15:19402965-19403181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):73, 144

               
               
               Conread position:137-355
               
               
               Cow position:chr15:22871574-22871806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):103, 63

               
               
               Conread position:137-355
               
               
               Cow position:chr15:39316882-39316637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):91, 203

               
               
               Conread position:142-355
               
               
               Cow position:chr15:28924790-28924565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:143-352
               
               
               Cow position:chr15:22168040-22168255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:144-247
               
               
               Cow position:chr15:4500670-4500772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr15:22444017-22443915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr15:17084176-17084279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr15:31024960-31025065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr15:42190413-42190515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-250
               
               
               Cow position:chr15:16657440-16657547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:144-252
               
               
               Cow position:chr15:18437975-18438089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:144-318
               
               
               Cow position:chr15:42888865-42888674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:144-320
               
               
               Cow position:chr15:14176532-14176334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-326
               
               
               Cow position:chr15:21803690-21803489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:144-335
               
               
               Cow position:chr15:39286441-39286232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:144-349
               
               
               Cow position:chr15:36391641-36391869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:144-351
               
               
               Cow position:chr15:24982212-24981996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-352
               
               
               Cow position:chr15:12785397-12785621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 172

               
               
               Conread position:144-353
               
               
               Cow position:chr15:5499051-5498833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):109, 87

               
               
               Conread position:144-355
               
               
               Cow position:chr15:5571662-5571438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr15:10512299-10512070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:144-355
               
               
               Cow position:chr15:16667528-16667302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 198

               
               
               Conread position:144-355
               
               
               Cow position:chr15:19186646-19186419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr15:22532219-22532438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr15:24797839-24797611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:144-355
               
               
               Cow position:chr15:24941395-24941176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr15:27900543-27900309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):89, 200

               
               
               Conread position:144-355
               
               
               Cow position:chr15:32324238-32324006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):84, 176

               
               
               Conread position:144-355
               
               
               Cow position:chr15:44436720-44436931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):100, 149

               
               
               Conread position:145-353
               
               
               Cow position:chr15:5929865-5930089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 161

               
               
               Conread position:145-354
               
               
               Cow position:chr15:32287772-32287558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 159

               
               
               Conread position:145-355
               
               
               Cow position:chr15:5072116-5071900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):87, 190

               
               
               Conread position:145-355
               
               
               Cow position:chr15:51822121-51822342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:146-352
               
               
               Cow position:chr15:7535686-7535469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:146-355
               
               
               Cow position:chr15:43626439-43626668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:148-253
               
               
               Cow position:chr15:33976724-33976621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:148-355
               
               
               Cow position:chr15:21821953-21821726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):84, 200

               
               
               Conread position:148-355
               
               
               Cow position:chr15:39621309-39621542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:149-231
               
               
               Cow position:chr15:40368262-40368344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:73
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-248
               
               
               Cow position:chr15:14261285-14261187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:149-304
               
               
               Cow position:chr15:4509824-4509667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):72, 44

               
               
               Conread position:149-351
               
               
               Cow position:chr15:21389191-21388972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:149-353
               
               
               Cow position:chr15:5726296-5726522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr15:9781443-9781662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):84, 165

               
               
               Conread position:149-355
               
               
               Cow position:chr15:1330131-1329902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:149-355
               
               
               Cow position:chr15:29330978-29331204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):84, 218

               
               
               Conread position:150-350
               
               
               Cow position:chr15:34207214-34206993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr15:22136663-22136882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 177

               
               
               Conread position:150-355
               
               
               Cow position:chr15:31857564-31857789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:151-349
               
               
               Cow position:chr15:43788236-43788446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):75, 160

               
               
               Conread position:152-307
               
               
               Cow position:chr15:53116478-53116639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:152-339
               
               
               Cow position:chr15:45584708-45584908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):81, 172

               
               
               Conread position:152-355
               
               
               Cow position:chr15:4485129-4485341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 153

               
               
               Conread position:155-355
               
               
               Cow position:chr15:31560410-31560202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 155

               
               
               Conread position:156-355
               
               
               Cow position:chr15:43599168-43599388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):77, 184

               
               
               Conread position:158-353
               
               
               Cow position:chr15:45216820-45217019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 28

               
               
               Conread position:161-355
               
               
               Cow position:chr15:39599431-39599642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:226-355
               
               
               Cow position:chr15:36725114-36724979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr15:10845787-10845920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr15:17859162-17859036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr15:36621476-36621613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr15:36782257-36782127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):25, 80

               
               
               Conread position:232-347
               
               
               Cow position:chr15:5632756-5632875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-354
               
               
               Cow position:chr15:35205076-35204949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr15:12359108-12359236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:233-354
               
               
               Cow position:chr15:13684197-13684067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:233-354
               
               
               Cow position:chr15:20725545-20725418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:234-353
               
               
               Cow position:chr15:35642092-35642217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr15:34145076-34144955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr15:43673856-43673737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:244-353
               
               
               Cow position:chr15:11363094-11362979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:272-354
               
               
               Cow position:chr15:8665475-8665392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:75
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:71-355
               
               
               Cow position:chr16:20872223-20871915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:72-355
               
               
               Cow position:chr16:49336432-49336117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:73-247
               
               
               Cow position:chr16:6609298-6609483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:73-251
               
               
               Cow position:chr16:16163503-16163689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 169

               
               
               Conread position:73-355
               
               
               Cow position:chr16:26342441-26342163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 77

               
               
               Conread position:74-230
               
               
               Cow position:chr16:4321791-4321628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 51

               
               
               Conread position:74-235
               
               
               Cow position:chr16:52834692-52834856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:75-220
               
               
               Cow position:chr16:4886988-4887139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 48

               
               
               Conread position:75-240
               
               
               Cow position:chr16:27723418-27723251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:75-248
               
               
               Cow position:chr16:11359357-11359171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 181

               
               
               Conread position:75-253
               
               
               Cow position:chr16:7928174-7928370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 186

               
               
               Conread position:75-253
               
               
               Cow position:chr16:48095561-48095750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):48, 179

               
               
               Conread position:75-256
               
               
               Cow position:chr16:50678066-50677881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 165

               
               
               Conread position:75-349
               
               
               Cow position:chr16:7441892-7442205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):47, 124

               
               
               Conread position:75-355
               
               
               Cow position:chr16:29159320-29159020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:76-191
               
               
               Cow position:chr16:39513274-39513388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:76-231
               
               
               Cow position:chr16:30211656-30211490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:76-262
               
               
               Cow position:chr16:11775790-11775993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:76-333
               
               
               Cow position:chr16:8768983-8768715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:76-349
               
               
               Cow position:chr16:889169-889464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:76-352
               
               
               Cow position:chr16:8065678-8065993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 263

               
               
               Conread position:77-235
               
               
               Cow position:chr16:31078898-31079059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 6

               
               
               Conread position:77-242
               
               
               Cow position:chr16:15171212-15171371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):159, 15

               
               
               Conread position:77-253
               
               
               Cow position:chr16:22207264-22207095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:77-353
               
               
               Cow position:chr16:56082156-56082472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:77-355
               
               
               Cow position:chr16:13306665-13306975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 268

               
               
               Conread position:77-355
               
               
               Cow position:chr16:48145200-48145514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:77-355
               
               
               Cow position:chr16:54226408-54226710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:78-230
               
               
               Cow position:chr16:34291095-34291254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:78-248
               
               
               Cow position:chr16:40029680-40029866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:80-253
               
               
               Cow position:chr16:31484463-31484647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 104

               
               
               Conread position:81-232
               
               
               Cow position:chr16:15251858-15252017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:81-251
               
               
               Cow position:chr16:14005927-14006104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-341
               
               
               Cow position:chr16:34998420-34998713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 249

               
               
               Conread position:81-347
               
               
               Cow position:chr16:45554636-45554339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:81-354
               
               
               Cow position:chr16:18206157-18205850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:82-238
               
               
               Cow position:chr16:26069940-26069779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:82-247
               
               
               Cow position:chr16:9097227-9097044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 181

               
               
               Conread position:82-248
               
               
               Cow position:chr16:33135128-33134957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 168

               
               
               Conread position:82-248
               
               
               Cow position:chr16:40333134-40333305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:82-250
               
               
               Cow position:chr16:15254572-15254735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 60

               
               
               Conread position:82-346
               
               
               Cow position:chr16:11660269-11660549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:82-355
               
               
               Cow position:chr16:43308364-43308673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:82-355
               
               
               Cow position:chr16:50453949-50453651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:83-215
               
               
               Cow position:chr16:9127005-9126862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:83-215
               
               
               Cow position:chr16:13316694-13316818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr16:29311728-29311560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr16:49388588-49388430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 115

               
               
               Conread position:83-231
               
               
               Cow position:chr16:7542486-7542334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:83-231
               
               
               Cow position:chr16:8018157-8018004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr16:16968508-16968666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr16:23089041-23088881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 137

               
               
               Conread position:83-231
               
               
               Cow position:chr16:30646709-30646548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr16:50569460-50569299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr16:17979965-17979816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:83-240
               
               
               Cow position:chr16:18572855-18573027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 120

               
               
               Conread position:83-240
               
               
               Cow position:chr16:42733821-42733984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-247
               
               
               Cow position:chr16:38355231-38355410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr16:4102642-4102811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):39, 166

               
               
               Conread position:83-248
               
               
               Cow position:chr16:28395891-28396063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:83-250
               
               
               Cow position:chr16:41806924-41807084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:83-252
               
               
               Cow position:chr16:42432917-42433097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-296
               
               
               Cow position:chr16:589527-589762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):35, 144

               
               
               Conread position:83-319
               
               
               Cow position:chr16:4911251-4911504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):39, 142

               
               
               Conread position:83-326
               
               
               Cow position:chr16:44429077-44428797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-329
               
               
               Cow position:chr16:50931333-50931602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-346
               
               
               Cow position:chr16:46552993-46552704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):39, 247

               
               
               Conread position:83-350
               
               
               Cow position:chr16:40514293-40514587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-351
               
               
               Cow position:chr16:22984950-22984650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-352
               
               
               Cow position:chr16:2751174-2750887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 120

               
               
               Conread position:83-352
               
               
               Cow position:chr16:15370883-15370574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr16:8522191-8522502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 149

               
               
               Conread position:83-353
               
               
               Cow position:chr16:11774850-11775158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr16:29096117-29095828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):39, 249

               
               
               Conread position:83-353
               
               
               Cow position:chr16:48385217-48385510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:83-354
               
               
               Cow position:chr16:8025669-8025957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:83-354
               
               
               Cow position:chr16:29655514-29655219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):39, 236

               
               
               Conread position:83-354
               
               
               Cow position:chr16:56565788-56565487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:83-355
               
               
               Cow position:chr16:7499236-7498949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 7

               
               
               Conread position:83-355
               
               
               Cow position:chr16:14974368-14974645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 40

               
               
               Conread position:83-355
               
               
               Cow position:chr16:16565309-16565012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 280

               
               
               Conread position:83-355
               
               
               Cow position:chr16:25839811-25839507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr16:36120796-36121091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:83-355
               
               
               Cow position:chr16:38905024-38905340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr16:42340377-42340085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:83-355
               
               
               Cow position:chr16:50282235-50282537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr16:51697275-51696971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):28, 281

               
               
               Conread position:83-355
               
               
               Cow position:chr16:52274935-52275242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr16:53508792-53509094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:85-248
               
               
               Cow position:chr16:56665764-56665595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 96

               
               
               Conread position:85-353
               
               
               Cow position:chr16:43505637-43505908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):148, 18

               
               
               Conread position:86-240
               
               
               Cow position:chr16:8809900-8810067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:86-353
               
               
               Cow position:chr16:7665837-7665527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-247
               
               
               Cow position:chr16:19053695-19053864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:87-248
               
               
               Cow position:chr16:7496445-7496276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:87-248
               
               
               Cow position:chr16:17474952-17474785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:87-353
               
               
               Cow position:chr16:23681557-23681260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 150

               
               
               Conread position:87-353
               
               
               Cow position:chr16:50933698-50933980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 120

               
               
               Conread position:87-355
               
               
               Cow position:chr16:28692563-28692831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 82

               
               
               Conread position:87-355
               
               
               Cow position:chr16:29766516-29766226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:87-355
               
               
               Cow position:chr16:41530112-41530402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):28, 212

               
               
               Conread position:87-355
               
               
               Cow position:chr16:47852402-47852704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:89-353
               
               
               Cow position:chr16:14685196-14685499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:89-353
               
               
               Cow position:chr16:41689866-41689586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):144, 36

               
               
               Conread position:89-355
               
               
               Cow position:chr16:13712748-13713023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 242

               
               
               Conread position:89-355
               
               
               Cow position:chr16:39165427-39165133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 265

               
               
               Conread position:92-248
               
               
               Cow position:chr16:12939808-12939641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 154

               
               
               Conread position:92-250
               
               
               Cow position:chr16:10148458-10148300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:92-253
               
               
               Cow position:chr16:22773164-22772994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 162

               
               
               Conread position:95-355
               
               
               Cow position:chr16:17736416-17736153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 127

               
               
               Conread position:95-355
               
               
               Cow position:chr16:45676686-45676964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 178

               
               
               Conread position:96-349
               
               
               Cow position:chr16:14568304-14568589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):29, 241

               
               
               Conread position:97-248
               
               
               Cow position:chr16:9596553-9596390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:101-312
               
               
               Cow position:chr16:8205922-8206134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:104-272
               
               
               Cow position:chr16:1415144-1415319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):138, 19

               
               
               Conread position:106-354
               
               
               Cow position:chr16:56796507-56796776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):124, 42

               
               
               Conread position:109-231
               
               
               Cow position:chr16:48099618-48099496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:109-355
               
               
               Cow position:chr16:6378968-6379219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:110-353
               
               
               Cow position:chr16:42241955-42242225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:122-270
               
               
               Cow position:chr16:13252163-13252325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:125-348
               
               
               Cow position:chr16:23366380-23366140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):104, 28

               
               
               Conread position:126-355
               
               
               Cow position:chr16:11940179-11939930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:126-355
               
               
               Cow position:chr16:35188392-35188143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:135-248
               
               
               Cow position:chr16:28199160-28199047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-230
               
               
               Cow position:chr16:12097771-12097678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-240
               
               
               Cow position:chr16:46548139-46548242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-353
               
               
               Cow position:chr16:10773252-10773023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:137-353
               
               
               Cow position:chr16:43276149-43275912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr16:20025570-20025335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:137-355
               
               
               Cow position:chr16:53086210-53086441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):13, 180

               
               
               Conread position:138-353
               
               
               Cow position:chr16:16402204-16402433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:140-355
               
               
               Cow position:chr16:47509872-47510085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):114, 28

               
               
               Conread position:141-247
               
               
               Cow position:chr16:12220807-12220698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:141-355
               
               
               Cow position:chr16:50078634-50078852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:143-248
               
               
               Cow position:chr16:42107753-42107646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr16:7812813-7812726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:79
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr16:7910680-7910767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr16:9950816-9950901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:78
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr16:11654165-11654069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr16:14046408-14046502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr16:14343702-14343606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr16:27032699-27032603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr16:13996073-13996175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr16:7611986-7611883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 30

               
               
               Conread position:144-248
               
               
               Cow position:chr16:12457962-12458065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr16:22329284-22329181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:90
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr16:44138370-44138474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-250
               
               
               Cow position:chr16:258163-258264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:144-250
               
               
               Cow position:chr16:25419131-25419236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-252
               
               
               Cow position:chr16:19282128-19282016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:144-253
               
               
               Cow position:chr16:33290507-33290399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-330
               
               
               Cow position:chr16:30358940-30359147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-351
               
               
               Cow position:chr16:25380372-25380601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr16:4910402-4910636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr16:35623127-35623351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):92, 180

               
               
               Conread position:144-353
               
               
               Cow position:chr16:37452491-37452725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr16:8231244-8231461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 49

               
               
               Conread position:144-354
               
               
               Cow position:chr16:38663588-38663818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):75, 190

               
               
               Conread position:144-355
               
               
               Cow position:chr16:2223274-2223513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr16:4134982-4134761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr16:5654621-5654403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:144-355
               
               
               Cow position:chr16:7550089-7549856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:144-355
               
               
               Cow position:chr16:8448532-8448757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):88, 28

               
               
               Conread position:144-355
               
               
               Cow position:chr16:12274191-12273957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:144-355
               
               
               Cow position:chr16:42633621-42633862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr16:45610108-45609879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr16:48086747-48086979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:144-355
               
               
               Cow position:chr16:49169258-49169497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr16:52133395-52133624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:145-231
               
               
               Cow position:chr16:24202745-24202831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-273
               
               
               Cow position:chr16:20648034-20647900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:145-352
               
               
               Cow position:chr16:8933306-8933532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:145-354
               
               
               Cow position:chr16:54734358-54734135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:146-240
               
               
               Cow position:chr16:27759484-27759579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:146-248
               
               
               Cow position:chr16:23811241-23811140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:148-250
               
               
               Cow position:chr16:30027992-30027891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:148-355
               
               
               Cow position:chr16:33588777-33588558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 168

               
               
               Conread position:149-247
               
               
               Cow position:chr16:16280255-16280352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:149-248
               
               
               Cow position:chr16:48448841-48448743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:149-348
               
               
               Cow position:chr16:7619067-7619282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:149-353
               
               
               Cow position:chr16:51247052-51246840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 184

               
               
               Conread position:149-354
               
               
               Cow position:chr16:53830474-53830696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr16:4698872-4699092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:149-355
               
               
               Cow position:chr16:21905264-21905054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):47, 69

               
               
               Conread position:149-355
               
               
               Cow position:chr16:32132625-32132414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 70

               
               
               Conread position:150-248
               
               
               Cow position:chr16:56670802-56670899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:150-351
               
               
               Cow position:chr16:4192317-4192526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):83, 179

               
               
               Conread position:150-353
               
               
               Cow position:chr16:4399852-4399627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr16:8811979-8812194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:150-355
               
               
               Cow position:chr16:53089241-53089452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:151-248
               
               
               Cow position:chr16:44568997-44568901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:151-355
               
               
               Cow position:chr16:43674990-43674763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):63, 165

               
               
               Conread position:152-351
               
               
               Cow position:chr16:10945326-10945538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:155-247
               
               
               Cow position:chr16:56912576-56912669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:83
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):78, 69

               
               
               Conread position:156-355
               
               
               Cow position:chr16:33869652-33869872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:159-355
               
               
               Cow position:chr16:30135799-30136005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:165-355
               
               
               Cow position:chr16:570818-571025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:173-355
               
               
               Cow position:chr16:50521570-50521366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:174-354
               
               
               Cow position:chr16:53891694-53891892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:182-355
               
               
               Cow position:chr16:33790753-33790943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:230-354
               
               
               Cow position:chr16:30143184-30143315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr16:42072713-42072838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:232-354
               
               
               Cow position:chr16:39417100-39417228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr16:22868158-22868284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:232-355
               
               
               Cow position:chr16:24672337-24672466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:232-355
               
               
               Cow position:chr16:52855012-52855135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:232-355
               
               
               Cow position:chr16:54084056-54083924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:237-355
               
               
               Cow position:chr16:47620394-47620269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:238-355
               
               
               Cow position:chr16:26068944-26068820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:240-355
               
               
               Cow position:chr16:44973506-44973384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr16:51399739-51399858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr16:56937748-56937636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:242-355
               
               
               Cow position:chr16:30209760-30209644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:272-355
               
               
               Cow position:chr16:26501128-26501045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:75
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-248
               
               
               Cow position:chr17:33653441-33653630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 184

               
               
               Conread position:71-248
               
               
               Cow position:chr17:42675788-42675972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 92

               
               
               Conread position:71-355
               
               
               Cow position:chr17:25917138-25916826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):55, 109

               
               
               Conread position:72-231
               
               
               Cow position:chr17:11055915-11056084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 136

               
               
               Conread position:72-355
               
               
               Cow position:chr17:14004076-14003747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:73-245
               
               
               Cow position:chr17:41380266-41380447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 148

               
               
               Conread position:74-355
               
               
               Cow position:chr17:22128173-22127856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 289

               
               
               Conread position:75-227
               
               
               Cow position:chr17:26183595-26183424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:75-248
               
               
               Cow position:chr17:25587216-25587396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 165

               
               
               Conread position:76-230
               
               
               Cow position:chr17:18883521-18883682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 66

               
               
               Conread position:76-239
               
               
               Cow position:chr17:32978690-32978866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:76-306
               
               
               Cow position:chr17:20199106-20199359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 246

               
               
               Conread position:77-230
               
               
               Cow position:chr17:42259447-42259292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:77-239
               
               
               Cow position:chr17:21709700-21709859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):144, 45

               
               
               Conread position:77-322
               
               
               Cow position:chr17:18818809-18818530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:78-231
               
               
               Cow position:chr17:18708372-18708535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:78-240
               
               
               Cow position:chr17:12887597-12887426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:78-352
               
               
               Cow position:chr17:36814610-36814292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:78-352
               
               
               Cow position:chr17:42419950-42419656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:80-355
               
               
               Cow position:chr17:20335889-20335592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:81-229
               
               
               Cow position:chr17:12946117-12946271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 142

               
               
               Conread position:81-230
               
               
               Cow position:chr17:30108673-30108516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):5, 64

               
               
               Conread position:81-230
               
               
               Cow position:chr17:30168994-30169154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 42

               
               
               Conread position:81-231
               
               
               Cow position:chr17:5038813-5038975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:81-231
               
               
               Cow position:chr17:36943605-36943445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 152

               
               
               Conread position:81-349
               
               
               Cow position:chr17:1025592-1025885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:81-354
               
               
               Cow position:chr17:18720210-18720519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:81-355
               
               
               Cow position:chr17:36178808-36179091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):43, 130

               
               
               Conread position:81-355
               
               
               Cow position:chr17:38362771-38363057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:82-223
               
               
               Cow position:chr17:33271429-33271579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 130

               
               
               Conread position:82-251
               
               
               Cow position:chr17:12289169-12289352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 169

               
               
               Conread position:82-253
               
               
               Cow position:chr17:21039797-21039612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 175

               
               
               Conread position:82-267
               
               
               Cow position:chr17:6423995-6423802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:82-353
               
               
               Cow position:chr17:36791365-36791063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 292

               
               
               Conread position:83-222
               
               
               Cow position:chr17:243361-243217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 123

               
               
               Conread position:83-226
               
               
               Cow position:chr17:22189671-22189516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr17:30108116-30107975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:83-232
               
               
               Cow position:chr17:39606662-39606505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr17:25122008-25122172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-242
               
               
               Cow position:chr17:38430405-38430562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:83-247
               
               
               Cow position:chr17:33793392-33793223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):41, 154

               
               
               Conread position:83-248
               
               
               Cow position:chr17:3364829-3364649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 159

               
               
               Conread position:83-248
               
               
               Cow position:chr17:8153110-8153281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):6, 97

               
               
               Conread position:83-248
               
               
               Cow position:chr17:35457578-35457758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:83-250
               
               
               Cow position:chr17:6761614-6761790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:83-252
               
               
               Cow position:chr17:3354109-3353937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:83-259
               
               
               Cow position:chr17:19471533-19471725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-329
               
               
               Cow position:chr17:3619866-3620115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):158, 37

               
               
               Conread position:83-333
               
               
               Cow position:chr17:25126584-25126303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-341
               
               
               Cow position:chr17:9770745-9770454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-347
               
               
               Cow position:chr17:44107929-44108215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 234

               
               
               Conread position:83-351
               
               
               Cow position:chr17:24883330-24883634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-352
               
               
               Cow position:chr17:13243814-13244108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:83-353
               
               
               Cow position:chr17:1562551-1562840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 226

               
               
               Conread position:83-354
               
               
               Cow position:chr17:1469606-1469307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 282

               
               
               Conread position:83-354
               
               
               Cow position:chr17:7143097-7142796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 248

               
               
               Conread position:83-354
               
               
               Cow position:chr17:24077627-24077334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr17:17180285-17179979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 220

               
               
               Conread position:83-355
               
               
               Cow position:chr17:17682674-17682973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr17:20234436-20234158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 68

               
               
               Conread position:83-355
               
               
               Cow position:chr17:21489394-21489694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr17:31231717-31232001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:83-355
               
               
               Cow position:chr17:41289804-41290091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 146

               
               
               Conread position:84-230
               
               
               Cow position:chr17:26554755-26554600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 30

               
               
               Conread position:84-235
               
               
               Cow position:chr17:10825715-10825552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:84-248
               
               
               Cow position:chr17:34835886-34836050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:85-231
               
               
               Cow position:chr17:24987440-24987282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 145

               
               
               Conread position:85-355
               
               
               Cow position:chr17:2275686-2275404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):145, 25

               
               
               Conread position:86-355
               
               
               Cow position:chr17:29472694-29472399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):31, 262

               
               
               Conread position:87-231
               
               
               Cow position:chr17:25930313-25930463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 108

               
               
               Conread position:87-340
               
               
               Cow position:chr17:27429792-27429520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:87-355
               
               
               Cow position:chr17:11101582-11101871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:87-355
               
               
               Cow position:chr17:15684739-15684442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:88-355
               
               
               Cow position:chr17:40772065-40771766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 138

               
               
               Conread position:89-248
               
               
               Cow position:chr17:24862689-24862518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):33, 166

               
               
               Conread position:89-307
               
               
               Cow position:chr17:27303746-27303981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:89-349
               
               
               Cow position:chr17:5000367-5000643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:89-353
               
               
               Cow position:chr17:12768597-12768849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:92-353
               
               
               Cow position:chr17:22564409-22564113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:92-355
               
               
               Cow position:chr17:43717109-43717385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):22, 204

               
               
               Conread position:93-248
               
               
               Cow position:chr17:10414723-10414556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:94-344
               
               
               Cow position:chr17:2034728-2034472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:94-355
               
               
               Cow position:chr17:18860515-18860793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:95-230
               
               
               Cow position:chr17:35311747-35311607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:95-230
               
               
               Cow position:chr17:38736659-38736515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:95-324
               
               
               Cow position:chr17:24773904-24773661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 226

               
               
               Conread position:95-352
               
               
               Cow position:chr17:12219727-12220004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:95-355
               
               
               Cow position:chr17:25097672-25097392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):23, 84

               
               
               Conread position:96-253
               
               
               Cow position:chr17:5422851-5423014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 153

               
               
               Conread position:97-248
               
               
               Cow position:chr17:29245660-29245503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):25, 147

               
               
               Conread position:98-272
               
               
               Cow position:chr17:25095693-25095513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:103-345
               
               
               Cow position:chr17:5688180-5688418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:104-355
               
               
               Cow position:chr17:13143502-13143761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:130-354
               
               
               Cow position:chr17:30359634-30359404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):103, 29

               
               
               Conread position:133-355
               
               
               Cow position:chr17:19999295-19999069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 100

               
               
               Conread position:137-232
               
               
               Cow position:chr17:31037207-31037302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr17:5012905-5013016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):54, 106

               
               
               Conread position:137-253
               
               
               Cow position:chr17:5344787-5344672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-253
               
               
               Cow position:chr17:26072591-26072706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-352
               
               
               Cow position:chr17:15299710-15299942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:142-355
               
               
               Cow position:chr17:25189450-25189217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:143-354
               
               
               Cow position:chr17:15376754-15376537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:144-230
               
               
               Cow position:chr17:25702764-25702678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:76
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr17:34836334-34836247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:77
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr17:40355421-40355334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:77
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr17:10650275-10650173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr17:25193364-25193467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr17:43957823-43957720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-252
               
               
               Cow position:chr17:21298606-21298497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-270
               
               
               Cow position:chr17:18673877-18674008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:144-283
               
               
               Cow position:chr17:25467145-25466995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-349
               
               
               Cow position:chr17:26789582-26789361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 198

               
               
               Conread position:144-350
               
               
               Cow position:chr17:32553892-32554089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 57

               
               
               Conread position:144-355
               
               
               Cow position:chr17:1492986-1493220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 205

               
               
               Conread position:144-355
               
               
               Cow position:chr17:10037570-10037375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):110, 74

               
               
               Conread position:144-355
               
               
               Cow position:chr17:14025747-14025983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr17:17410456-17410220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr17:18920208-18920420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):95, 114

               
               
               Conread position:144-355
               
               
               Cow position:chr17:21959525-21959757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr17:27048318-27048089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 76

               
               
               Conread position:144-355
               
               
               Cow position:chr17:30665432-30665201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:144-355
               
               
               Cow position:chr17:40288838-40289066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:145-238
               
               
               Cow position:chr17:8108196-8108289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-248
               
               
               Cow position:chr17:3291232-3291130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 68

               
               
               Conread position:145-355
               
               
               Cow position:chr17:10431813-10432047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:147-353
               
               
               Cow position:chr17:41030097-41029886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:148-246
               
               
               Cow position:chr17:16195756-16195658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:148-248
               
               
               Cow position:chr17:32989635-32989536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:148-248
               
               
               Cow position:chr17:32993465-32993564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:148-337
               
               
               Cow position:chr17:2810791-2810573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:148-353
               
               
               Cow position:chr17:20126754-20126544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 5

               
               
               Conread position:148-354
               
               
               Cow position:chr17:45882060-45881833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:148-355
               
               
               Cow position:chr17:37479843-37480062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 172

               
               
               Conread position:149-230
               
               
               Cow position:chr17:21680937-21680856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:82
               
               
               Alignm identity:73
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-248
               
               
               Cow position:chr17:37430347-37430445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:149-352
               
               
               Cow position:chr17:9854133-9853922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:149-352
               
               
               Cow position:chr17:21363539-21363344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 123

               
               
               Conread position:149-353
               
               
               Cow position:chr17:979011-979224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:149-355
               
               
               Cow position:chr17:267447-267655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:149-355
               
               
               Cow position:chr17:552809-553029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr17:5895776-5895980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr17:21495529-21495306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:150-354
               
               
               Cow position:chr17:8079469-8079247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:151-307
               
               
               Cow position:chr17:12088459-12088312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:151-355
               
               
               Cow position:chr17:8690296-8690512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:153-354
               
               
               Cow position:chr17:21755280-21755499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:153-355
               
               
               Cow position:chr17:6848948-6848735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):77, 155

               
               
               Conread position:154-355
               
               
               Cow position:chr17:3371769-3371564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 66

               
               
               Conread position:154-355
               
               
               Cow position:chr17:27202895-27203114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):79, 8

               
               
               Conread position:155-352
               
               
               Cow position:chr17:1114040-1113823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:155-353
               
               
               Cow position:chr17:20992890-20993108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:156-351
               
               
               Cow position:chr17:30539119-30539319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:156-352
               
               
               Cow position:chr17:9565451-9565242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:156-353
               
               
               Cow position:chr17:8544455-8544239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:159-355
               
               
               Cow position:chr17:6624383-6624188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 54

               
               
               Conread position:163-355
               
               
               Cow position:chr17:22032551-22032761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 136

               
               
               Conread position:164-355
               
               
               Cow position:chr17:32017749-32017950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 78

               
               
               Conread position:172-353
               
               
               Cow position:chr17:9778363-9778179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:190-355
               
               
               Cow position:chr17:20780610-20780440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:219-353
               
               
               Cow position:chr17:21312738-21312879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:223-355
               
               
               Cow position:chr17:1353466-1353328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:230-355
               
               
               Cow position:chr17:38990160-38990033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:232-354
               
               
               Cow position:chr17:31480985-31481105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:232-355
               
               
               Cow position:chr17:1466368-1466500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 8

               
               
               Conread position:232-355
               
               
               Cow position:chr17:3471479-3471350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr17:27795708-27795575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr17:28540090-28539959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:233-352
               
               
               Cow position:chr17:11839775-11839648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:233-355
               
               
               Cow position:chr17:2839968-2839837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:238-354
               
               
               Cow position:chr17:3353923-3353812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:239-355
               
               
               Cow position:chr17:20839515-20839631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:240-353
               
               
               Cow position:chr17:1295519-1295638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:271-355
               
               
               Cow position:chr17:42347213-42347295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:76
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:64-261
               
               
               Cow position:chr18:16313563-16313353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 178

               
               
               Conread position:71-225
               
               
               Cow position:chr18:51655004-51655170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):50, 149

               
               
               Conread position:71-320
               
               
               Cow position:chr18:46646993-46647258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:72-248
               
               
               Cow position:chr18:35581876-35582052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 76

               
               
               Conread position:73-235
               
               
               Cow position:chr18:48407909-48407737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:73-247
               
               
               Cow position:chr18:33757190-33757004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):49, 118

               
               
               Conread position:73-248
               
               
               Cow position:chr18:19646333-19646159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:73-352
               
               
               Cow position:chr18:14586302-14586606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:73-355
               
               
               Cow position:chr18:1144016-1144327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:73-355
               
               
               Cow position:chr18:10322974-10322662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):16, 253

               
               
               Conread position:75-340
               
               
               Cow position:chr18:29080967-29080690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:76-248
               
               
               Cow position:chr18:42427789-42427606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 57

               
               
               Conread position:76-253
               
               
               Cow position:chr18:49038627-49038443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):76, 174

               
               
               Conread position:76-353
               
               
               Cow position:chr18:12273823-12273515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:77-205
               
               
               Cow position:chr18:36296575-36296714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:78-248
               
               
               Cow position:chr18:50359496-50359318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 173

               
               
               Conread position:80-354
               
               
               Cow position:chr18:3066505-3066234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):17, 155

               
               
               Conread position:81-229
               
               
               Cow position:chr18:21050921-21051079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:81-232
               
               
               Cow position:chr18:44205926-44206083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:81-240
               
               
               Cow position:chr18:31159104-31159280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:81-351
               
               
               Cow position:chr18:5189523-5189828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:81-354
               
               
               Cow position:chr18:5632433-5632122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-355
               
               
               Cow position:chr18:51643201-51643510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:82-235
               
               
               Cow position:chr18:48713709-48713549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:82-248
               
               
               Cow position:chr18:28297716-28297878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-351
               
               
               Cow position:chr18:9010872-9010581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 239

               
               
               Conread position:82-354
               
               
               Cow position:chr18:10214024-10214339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-204
               
               
               Cow position:chr18:48290072-48290198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr18:23630449-23630604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr18:44909218-44909055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-232
               
               
               Cow position:chr18:45558309-45558149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr18:8170925-8171087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr18:9596343-9596181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr18:18844177-18844015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:83-235
               
               
               Cow position:chr18:24719475-24719311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:83-238
               
               
               Cow position:chr18:14172047-14172216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr18:39460382-39460213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:83-246
               
               
               Cow position:chr18:20462541-20462709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:83-247
               
               
               Cow position:chr18:6075242-6075412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:83-247
               
               
               Cow position:chr18:29390043-29390213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:83-247
               
               
               Cow position:chr18:51395728-51395898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 166

               
               
               Conread position:83-248
               
               
               Cow position:chr18:2144736-2144557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 174

               
               
               Conread position:83-248
               
               
               Cow position:chr18:5711510-5711667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr18:17005404-17005246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:83-248
               
               
               Cow position:chr18:33492513-33492344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr18:52251688-52251873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:83-249
               
               
               Cow position:chr18:17195180-17195362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-250
               
               
               Cow position:chr18:30786896-30786724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 165

               
               
               Conread position:83-250
               
               
               Cow position:chr18:36098524-36098348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-251
               
               
               Cow position:chr18:19765352-19765172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:83-328
               
               
               Cow position:chr18:12584678-12584961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-335
               
               
               Cow position:chr18:25281746-25282016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):28, 40

               
               
               Conread position:83-348
               
               
               Cow position:chr18:20641335-20641628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):40, 229

               
               
               Conread position:83-351
               
               
               Cow position:chr18:728187-727897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 53

               
               
               Conread position:83-353
               
               
               Cow position:chr18:247531-247824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 218

               
               
               Conread position:83-354
               
               
               Cow position:chr18:33300050-33299758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:83-354
               
               
               Cow position:chr18:39811417-39811711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):24, 271

               
               
               Conread position:83-354
               
               
               Cow position:chr18:42292896-42293194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 273

               
               
               Conread position:83-355
               
               
               Cow position:chr18:3180576-3180276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 244

               
               
               Conread position:83-355
               
               
               Cow position:chr18:18918797-18919100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):29, 130

               
               
               Conread position:83-355
               
               
               Cow position:chr18:19849605-19849900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 93

               
               
               Conread position:83-355
               
               
               Cow position:chr18:22120719-22121025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:83-355
               
               
               Cow position:chr18:29796282-29796569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:83-355
               
               
               Cow position:chr18:48242337-48242045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:83-355
               
               
               Cow position:chr18:51405751-51406053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:84-235
               
               
               Cow position:chr18:5647973-5647811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:84-238
               
               
               Cow position:chr18:44027340-44027191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:84-351
               
               
               Cow position:chr18:4495725-4496026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:85-232
               
               
               Cow position:chr18:47693218-47693067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:85-248
               
               
               Cow position:chr18:24022779-24022604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 170

               
               
               Conread position:85-351
               
               
               Cow position:chr18:47525556-47525273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:85-352
               
               
               Cow position:chr18:50382414-50382117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 283

               
               
               Conread position:86-251
               
               
               Cow position:chr18:27637655-27637475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:86-354
               
               
               Cow position:chr18:20173974-20174272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:87-231
               
               
               Cow position:chr18:51192586-51192738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:87-251
               
               
               Cow position:chr18:47868758-47868577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-349
               
               
               Cow position:chr18:38669661-38669942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:87-353
               
               
               Cow position:chr18:4264234-4264533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr18:7650137-7649853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr18:9846257-9846541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:88-353
               
               
               Cow position:chr18:31586233-31586508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:88-355
               
               
               Cow position:chr18:13360191-13359921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:88-355
               
               
               Cow position:chr18:47812599-47812325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:89-354
               
               
               Cow position:chr18:7414874-7415169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:89-355
               
               
               Cow position:chr18:30586076-30586364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):40, 245

               
               
               Conread position:93-278
               
               
               Cow position:chr18:18569134-18568942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:93-354
               
               
               Cow position:chr18:11322739-11322460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 195

               
               
               Conread position:93-354
               
               
               Cow position:chr18:42290178-42290466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):29, 263

               
               
               Conread position:94-248
               
               
               Cow position:chr18:40047349-40047512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:94-289
               
               
               Cow position:chr18:43014715-43014933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 93

               
               
               Conread position:98-353
               
               
               Cow position:chr18:30341049-30341316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:99-229
               
               
               Cow position:chr18:381061-380936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:100-323
               
               
               Cow position:chr18:24759510-24759768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:100-355
               
               
               Cow position:chr18:4648629-4648885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:103-353
               
               
               Cow position:chr18:49655827-49655564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 97

               
               
               Conread position:112-335
               
               
               Cow position:chr18:51443319-51443555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:122-353
               
               
               Cow position:chr18:33793799-33793565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 28

               
               
               Conread position:122-354
               
               
               Cow position:chr18:43555412-43555668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:123-252
               
               
               Cow position:chr18:24342955-24342823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:133-354
               
               
               Cow position:chr18:51691363-51691606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:133-354
               
               
               Cow position:chr18:51712617-51712842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):144, 117

               
               
               Conread position:137-245
               
               
               Cow position:chr18:55123342-55123234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-247
               
               
               Cow position:chr18:49982826-49982717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-250
               
               
               Cow position:chr18:56463635-56463750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 68

               
               
               Conread position:137-335
               
               
               Cow position:chr18:4872159-4871949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):100, 58

               
               
               Conread position:137-339
               
               
               Cow position:chr18:4489812-4490024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-352
               
               
               Cow position:chr18:11233508-11233292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 48

               
               
               Conread position:137-354
               
               
               Cow position:chr18:16997350-16997109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):96, 205

               
               
               Conread position:137-354
               
               
               Cow position:chr18:51392547-51392780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):96, 192

               
               
               Conread position:137-355
               
               
               Cow position:chr18:21768709-21768487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):109, 21

               
               
               Conread position:137-355
               
               
               Cow position:chr18:48453768-48453550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:140-240
               
               
               Cow position:chr18:52589875-52589974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:87
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr18:6399546-6399634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:77
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr18:19273007-19273110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr18:23649012-23648906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr18:45185961-45185858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr18:52382993-52382890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-253
               
               
               Cow position:chr18:47920835-47920725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:144-333
               
               
               Cow position:chr18:53092929-53093122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):129, 98

               
               
               Conread position:144-353
               
               
               Cow position:chr18:23821743-23821958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):97, 165

               
               
               Conread position:144-355
               
               
               Cow position:chr18:3115542-3115319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr18:7359834-7359600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):88, 177

               
               
               Conread position:144-355
               
               
               Cow position:chr18:16379015-16378800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:144-355
               
               
               Cow position:chr18:35530624-35530839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:144-355
               
               
               Cow position:chr18:56159550-56159317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):89, 56

               
               
               Conread position:145-351
               
               
               Cow position:chr18:7487320-7487118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):108, 73

               
               
               Conread position:145-352
               
               
               Cow position:chr18:39623889-39623660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 219

               
               
               Conread position:145-355
               
               
               Cow position:chr18:3211966-3211728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr18:26354956-26355170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):7, 67

               
               
               Conread position:146-353
               
               
               Cow position:chr18:34813724-34813507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:147-355
               
               
               Cow position:chr18:36746173-36746396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 208

               
               
               Conread position:149-336
               
               
               Cow position:chr18:19883617-19883404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:149-352
               
               
               Cow position:chr18:31724806-31725019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:149-354
               
               
               Cow position:chr18:4203846-4204064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):74, 149

               
               
               Conread position:149-354
               
               
               Cow position:chr18:46048836-46048617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 142

               
               
               Conread position:150-247
               
               
               Cow position:chr18:56171931-56172027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:150-248
               
               
               Cow position:chr18:11754213-11754116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:150-339
               
               
               Cow position:chr18:5457212-5457394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):159, 99

               
               
               Conread position:150-355
               
               
               Cow position:chr18:36459014-36458789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:151-355
               
               
               Cow position:chr18:7109210-7108984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:153-355
               
               
               Cow position:chr18:51850484-51850702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:154-355
               
               
               Cow position:chr18:39001736-39001946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):73, 22

               
               
               Conread position:155-334
               
               
               Cow position:chr18:23162964-23162769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:156-353
               
               
               Cow position:chr18:4666140-4666353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:159-355
               
               
               Cow position:chr18:21102702-21102916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:175-355
               
               
               Cow position:chr18:22274783-22274980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:178-354
               
               
               Cow position:chr18:31125173-31125364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 141

               
               
               Conread position:181-355
               
               
               Cow position:chr18:37363835-37363658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:229-355
               
               
               Cow position:chr18:15340455-15340591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:232-351
               
               
               Cow position:chr18:11680710-11680584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr18:42966852-42966722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-354
               
               
               Cow position:chr18:10861443-10861574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr18:33606617-33606487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr18:35636360-35636492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:235-355
               
               
               Cow position:chr18:32121084-32121206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:240-353
               
               
               Cow position:chr18:26286882-26286768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:241-355
               
               
               Cow position:chr18:3098344-3098462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:277-355
               
               
               Cow position:chr18:36297090-36297168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:72
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-227
               
               
               Cow position:chr19:36177205-36177044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:71-247
               
               
               Cow position:chr19:12202447-12202632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:71-248
               
               
               Cow position:chr19:25927210-25927401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):50, 186

               
               
               Conread position:71-355
               
               
               Cow position:chr19:15091945-15092250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):53, 103

               
               
               Conread position:72-235
               
               
               Cow position:chr19:23088180-23088004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:72-250
               
               
               Cow position:chr19:6093673-6093488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 105

               
               
               Conread position:73-230
               
               
               Cow position:chr19:4438939-4438783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:73-235
               
               
               Cow position:chr19:12943818-12943653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):50, 85

               
               
               Conread position:75-230
               
               
               Cow position:chr19:20517620-20517461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:75-238
               
               
               Cow position:chr19:32666901-32666738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):75, 40

               
               
               Conread position:75-253
               
               
               Cow position:chr19:38009833-38010011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:76-249
               
               
               Cow position:chr19:10930231-10930413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:76-355
               
               
               Cow position:chr19:11191426-11191739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:77-248
               
               
               Cow position:chr19:13325303-13325477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:80-250
               
               
               Cow position:chr19:50850025-50849845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:81-229
               
               
               Cow position:chr19:8185395-8185229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:81-230
               
               
               Cow position:chr19:43413969-43413808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr19:2068455-2068275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):5, 169

               
               
               Conread position:81-267
               
               
               Cow position:chr19:38500346-38500153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):30, 159

               
               
               Conread position:81-306
               
               
               Cow position:chr19:33610080-33609836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 176

               
               
               Conread position:81-351
               
               
               Cow position:chr19:47671924-47671631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:81-352
               
               
               Cow position:chr19:10755491-10755196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 208

               
               
               Conread position:81-353
               
               
               Cow position:chr19:20622847-20622536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):29, 258

               
               
               Conread position:81-354
               
               
               Cow position:chr19:25041055-25041359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:81-355
               
               
               Cow position:chr19:8869764-8869458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:81-355
               
               
               Cow position:chr19:24358070-24358352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:81-355
               
               
               Cow position:chr19:36845435-36845129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):41, 252

               
               
               Conread position:82-220
               
               
               Cow position:chr19:39378109-39378256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:82-231
               
               
               Cow position:chr19:22765801-22765647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):36, 125

               
               
               Conread position:82-240
               
               
               Cow position:chr19:41188025-41187854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-247
               
               
               Cow position:chr19:7594965-7595138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):7, 139

               
               
               Conread position:82-347
               
               
               Cow position:chr19:13267017-13267307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-355
               
               
               Cow position:chr19:15853115-15852825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 245

               
               
               Conread position:83-210
               
               
               Cow position:chr19:25582490-25582350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-227
               
               
               Cow position:chr19:10172518-10172365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-228
               
               
               Cow position:chr19:33637365-33637221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr19:30384909-30385068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr19:30908088-30907927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr19:39795377-39795214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-232
               
               
               Cow position:chr19:55357234-55357078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):6, 84

               
               
               Conread position:83-233
               
               
               Cow position:chr19:30917754-30917922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr19:37067321-37067160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr19:5521970-5522140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr19:41850057-41850218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 159

               
               
               Conread position:83-240
               
               
               Cow position:chr19:49290270-49290442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-242
               
               
               Cow position:chr19:28137335-28137167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-247
               
               
               Cow position:chr19:28037728-28037897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 165

               
               
               Conread position:83-248
               
               
               Cow position:chr19:2137640-2137817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 172

               
               
               Conread position:83-248
               
               
               Cow position:chr19:42904180-42904017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 78

               
               
               Conread position:83-250
               
               
               Cow position:chr19:4586361-4586541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:83-250
               
               
               Cow position:chr19:39587067-39587238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 135

               
               
               Conread position:83-269
               
               
               Cow position:chr19:23831537-23831321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-273
               
               
               Cow position:chr19:32938047-32937843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-317
               
               
               Cow position:chr19:35321948-35322221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:83-330
               
               
               Cow position:chr19:16659399-16659658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-331
               
               
               Cow position:chr19:25998442-25998177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:83-332
               
               
               Cow position:chr19:55247821-55247538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 250

               
               
               Conread position:83-344
               
               
               Cow position:chr19:34026547-34026808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):150, 63

               
               
               Conread position:83-349
               
               
               Cow position:chr19:729560-729861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:83-351
               
               
               Cow position:chr19:3217191-3216899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:83-353
               
               
               Cow position:chr19:10970920-10971215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:83-353
               
               
               Cow position:chr19:30471169-30471464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr19:5912769-5913078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr19:268536-268231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr19:5185070-5185367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr19:6532062-6531767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:83-355
               
               
               Cow position:chr19:12698505-12698201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:83-355
               
               
               Cow position:chr19:13121098-13121396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr19:46180672-46180937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:83-355
               
               
               Cow position:chr19:55475760-55475485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 246

               
               
               Conread position:84-238
               
               
               Cow position:chr19:37560021-37560180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:84-252
               
               
               Cow position:chr19:29958501-29958676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:84-352
               
               
               Cow position:chr19:36380391-36380125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):46, 41

               
               
               Conread position:84-355
               
               
               Cow position:chr19:2220885-2221201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:84-355
               
               
               Cow position:chr19:2589702-2589386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:85-342
               
               
               Cow position:chr19:12601988-12601702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:86-333
               
               
               Cow position:chr19:39648905-39649176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:87-231
               
               
               Cow position:chr19:1978359-1978205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-231
               
               
               Cow position:chr19:38597251-38597094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-273
               
               
               Cow position:chr19:30541382-30541584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 134

               
               
               Conread position:87-354
               
               
               Cow position:chr19:23304305-23304617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr19:34166552-34166248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 269

               
               
               Conread position:89-353
               
               
               Cow position:chr19:26975889-26976180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 244

               
               
               Conread position:89-353
               
               
               Cow position:chr19:35540465-35540176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:90-333
               
               
               Cow position:chr19:35870968-35870693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 110

               
               
               Conread position:91-347
               
               
               Cow position:chr19:25526459-25526166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 278

               
               
               Conread position:92-353
               
               
               Cow position:chr19:1351304-1351556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):162, 22

               
               
               Conread position:94-240
               
               
               Cow position:chr19:17964827-17964671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:95-233
               
               
               Cow position:chr19:24224510-24224361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:95-245
               
               
               Cow position:chr19:12469638-12469799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:95-307
               
               
               Cow position:chr19:25410678-25410918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):27, 232

               
               
               Conread position:99-355
               
               
               Cow position:chr19:33237330-33237054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:100-354
               
               
               Cow position:chr19:5433412-5433676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:105-354
               
               
               Cow position:chr19:49456991-49457252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:121-355
               
               
               Cow position:chr19:29115875-29115621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:123-351
               
               
               Cow position:chr19:53542768-53543009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:133-355
               
               
               Cow position:chr19:22134032-22134267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:137-238
               
               
               Cow position:chr19:2042204-2042102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:137-246
               
               
               Cow position:chr19:38625087-38624980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:137-284
               
               
               Cow position:chr19:2223985-2224141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr19:33469137-33468902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:137-355
               
               
               Cow position:chr19:55395018-55394784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:143-353
               
               
               Cow position:chr19:48475240-48475024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):93, 212

               
               
               Conread position:144-248
               
               
               Cow position:chr19:30227631-30227528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr19:30241809-30241706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-259
               
               
               Cow position:chr19:33626250-33626364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-261
               
               
               Cow position:chr19:18921131-18921247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-305
               
               
               Cow position:chr19:43373150-43372971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-336
               
               
               Cow position:chr19:24192472-24192285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 77

               
               
               Conread position:144-352
               
               
               Cow position:chr19:9295302-9295085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:144-354
               
               
               Cow position:chr19:8864851-8864626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:144-354
               
               
               Cow position:chr19:28451499-28451286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:144-354
               
               
               Cow position:chr19:43292165-43291930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr19:43954-43725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr19:6079256-6079482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:144-355
               
               
               Cow position:chr19:18646392-18646614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr19:19919351-19919584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:144-355
               
               
               Cow position:chr19:25673415-25673642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:144-355
               
               
               Cow position:chr19:38111576-38111350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):98, 184

               
               
               Conread position:145-231
               
               
               Cow position:chr19:31998163-31998249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-352
               
               
               Cow position:chr19:47859204-47859434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:145-355
               
               
               Cow position:chr19:21817073-21816841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr19:25807197-25807425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr19:48021533-48021754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 75

               
               
               Conread position:146-230
               
               
               Cow position:chr19:43985686-43985770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:74
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-353
               
               
               Cow position:chr19:42206032-42205812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:148-349
               
               
               Cow position:chr19:34819079-34819306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):85, 210

               
               
               Conread position:148-354
               
               
               Cow position:chr19:35233553-35233769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 162

               
               
               Conread position:149-235
               
               
               Cow position:chr19:39781626-39781540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-246
               
               
               Cow position:chr19:16870669-16870766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 21

               
               
               Conread position:149-268
               
               
               Cow position:chr19:51637146-51637028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:149-327
               
               
               Cow position:chr19:18054150-18054340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr19:3245954-3246173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr19:8128411-8128198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:149-355
               
               
               Cow position:chr19:25652653-25652875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):9, 167

               
               
               Conread position:149-355
               
               
               Cow position:chr19:41497540-41497751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):84, 128

               
               
               Conread position:150-253
               
               
               Cow position:chr19:52568370-52568472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:150-352
               
               
               Cow position:chr19:6687898-6688117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:150-353
               
               
               Cow position:chr19:43058629-43058416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:150-355
               
               
               Cow position:chr19:15862943-15863164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 183

               
               
               Conread position:150-355
               
               
               Cow position:chr19:39361249-39361020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:152-351
               
               
               Cow position:chr19:50682342-50682558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):73, 197

               
               
               Conread position:153-355
               
               
               Cow position:chr19:44572181-44571982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:154-345
               
               
               Cow position:chr19:2207691-2207885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 62

               
               
               Conread position:154-353
               
               
               Cow position:chr19:22798976-22799199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):79, 169

               
               
               Conread position:155-353
               
               
               Cow position:chr19:7404276-7404499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:156-349
               
               
               Cow position:chr19:37423192-37423385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:159
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):97, 74

               
               
               Conread position:156-353
               
               
               Cow position:chr19:30552116-30551907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):81, 155

               
               
               Conread position:159-355
               
               
               Cow position:chr19:47118398-47118618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:163-355
               
               
               Cow position:chr19:17273648-17273852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:164-355
               
               
               Cow position:chr19:53953599-53953779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:172-352
               
               
               Cow position:chr19:20092912-20093105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):57, 120

               
               
               Conread position:176-349
               
               
               Cow position:chr19:4328974-4329167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:179-355
               
               
               Cow position:chr19:42726410-42726238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):79, 53

               
               
               Conread position:206-353
               
               
               Cow position:chr19:15442803-15442644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:214-353
               
               
               Cow position:chr19:14992898-14993043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr19:2734458-2734328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr19:14928648-14928778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr19:51385691-51385819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:233-353
               
               
               Cow position:chr19:21335598-21335727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:240-354
               
               
               Cow position:chr19:38596618-38596498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-354
               
               
               Cow position:chr19:39587525-39587644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:240-355
               
               
               Cow position:chr19:33932148-33932271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:241-353
               
               
               Cow position:chr19:1898238-1898356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:241-355
               
               
               Cow position:chr19:10786369-10786492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:245-353
               
               
               Cow position:chr19:2138109-2138225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:276-355
               
               
               Cow position:chr19:39622846-39622925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:80
               
               
               Alignm identity:73
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-248
               
               
               Cow position:chr2:66149544-66149345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:65-338
               
               
               Cow position:chr2:80177379-80177677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):23, 273

               
               
               Conread position:70-355
               
               
               Cow position:chr2:41915213-41915522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):18, 236

               
               
               Conread position:71-224
               
               
               Cow position:chr2:69092943-69093106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:72-235
               
               
               Cow position:chr2:1335493-1335663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:72-235
               
               
               Cow position:chr2:77378672-77378505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:72-245
               
               
               Cow position:chr2:10710112-10710292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:72-253
               
               
               Cow position:chr2:17966831-17967014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 173

               
               
               Conread position:72-355
               
               
               Cow position:chr2:276878-276585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 50

               
               
               Conread position:73-247
               
               
               Cow position:chr2:43995140-43994956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):44, 180

               
               
               Conread position:73-352
               
               
               Cow position:chr2:19374170-19373876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):69, 210

               
               
               Conread position:73-355
               
               
               Cow position:chr2:15058852-15059171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:73-355
               
               
               Cow position:chr2:19155976-19156294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:73-355
               
               
               Cow position:chr2:45574799-45575105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:74-264
               
               
               Cow position:chr2:46015765-46015968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:74-349
               
               
               Cow position:chr2:21049125-21049420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):11, 223

               
               
               Conread position:74-352
               
               
               Cow position:chr2:56937885-56937574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:75-235
               
               
               Cow position:chr2:17114534-17114698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:75-250
               
               
               Cow position:chr2:70704445-70704276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:75-267
               
               
               Cow position:chr2:24530571-24530366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:75-342
               
               
               Cow position:chr2:20931197-20930926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:75-351
               
               
               Cow position:chr2:18997924-18997618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 213

               
               
               Conread position:75-355
               
               
               Cow position:chr2:38658589-38658893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:75-355
               
               
               Cow position:chr2:38886433-38886746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:76-230
               
               
               Cow position:chr2:9416596-9416757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:76-239
               
               
               Cow position:chr2:49345202-49345020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:76-246
               
               
               Cow position:chr2:24859210-24859034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:76-247
               
               
               Cow position:chr2:6160143-6160324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:76-250
               
               
               Cow position:chr2:68328644-68328836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:76-255
               
               
               Cow position:chr2:5755094-5755286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 114

               
               
               Conread position:76-354
               
               
               Cow position:chr2:24218010-24218324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):46, 240

               
               
               Conread position:76-355
               
               
               Cow position:chr2:31529692-31529401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 169

               
               
               Conread position:77-227
               
               
               Cow position:chr2:56003442-56003277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:77-228
               
               
               Cow position:chr2:51417102-51417260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:77-235
               
               
               Cow position:chr2:19164763-19164935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:77-235
               
               
               Cow position:chr2:22371749-22371920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:77-326
               
               
               Cow position:chr2:617801-618052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 152

               
               
               Conread position:77-355
               
               
               Cow position:chr2:46129960-46130260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:78-240
               
               
               Cow position:chr2:37121460-37121291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:78-248
               
               
               Cow position:chr2:44215705-44215523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 138

               
               
               Conread position:78-351
               
               
               Cow position:chr2:72003744-72004051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:79-339
               
               
               Cow position:chr2:74964652-74964388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:80-355
               
               
               Cow position:chr2:80770305-80770007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:81-214
               
               
               Cow position:chr2:3728225-3728079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-227
               
               
               Cow position:chr2:52484763-52484920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:81-230
               
               
               Cow position:chr2:74070530-74070369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:81-232
               
               
               Cow position:chr2:45537006-45537153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):6, 32

               
               
               Conread position:81-247
               
               
               Cow position:chr2:15872131-15871955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:81-250
               
               
               Cow position:chr2:61181812-61181646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 7

               
               
               Conread position:81-273
               
               
               Cow position:chr2:12873609-12873403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-355
               
               
               Cow position:chr2:26851355-26851052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:81-355
               
               
               Cow position:chr2:27178849-27178546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-355
               
               
               Cow position:chr2:44229503-44229798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:82-230
               
               
               Cow position:chr2:19025391-19025232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:82-248
               
               
               Cow position:chr2:46162153-46161975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:82-253
               
               
               Cow position:chr2:41248766-41248586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:82-353
               
               
               Cow position:chr2:44065765-44065482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 134

               
               
               Conread position:82-355
               
               
               Cow position:chr2:14709926-14710217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 239

               
               
               Conread position:83-231
               
               
               Cow position:chr2:31123065-31122918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr2:53500846-53501003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr2:38619237-38619409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-247
               
               
               Cow position:chr2:7194408-7194228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 171

               
               
               Conread position:83-247
               
               
               Cow position:chr2:43990970-43990789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-247
               
               
               Cow position:chr2:78379221-78379400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr2:79761-79940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr2:16668134-16667957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 114

               
               
               Conread position:83-248
               
               
               Cow position:chr2:38362180-38362345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:83-248
               
               
               Cow position:chr2:47879435-47879259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:83-248
               
               
               Cow position:chr2:55004483-55004307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 171

               
               
               Conread position:83-248
               
               
               Cow position:chr2:56010955-56011127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 169

               
               
               Conread position:83-248
               
               
               Cow position:chr2:65005776-65005620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:83-250
               
               
               Cow position:chr2:16018050-16018214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:83-250
               
               
               Cow position:chr2:26574957-26574778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:83-252
               
               
               Cow position:chr2:21950172-21949989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:83-253
               
               
               Cow position:chr2:38785402-38785577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 142

               
               
               Conread position:83-253
               
               
               Cow position:chr2:44313516-44313703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 169

               
               
               Conread position:83-254
               
               
               Cow position:chr2:6010211-6010390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:83-259
               
               
               Cow position:chr2:65603439-65603628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:83-273
               
               
               Cow position:chr2:29255037-29255233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 165

               
               
               Conread position:83-273
               
               
               Cow position:chr2:32488470-32488680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:83-275
               
               
               Cow position:chr2:61137739-61137546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:83-281
               
               
               Cow position:chr2:14848048-14847836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:83-310
               
               
               Cow position:chr2:19062349-19062107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):150, 54

               
               
               Conread position:83-326
               
               
               Cow position:chr2:29801945-29802204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 235

               
               
               Conread position:83-347
               
               
               Cow position:chr2:28717850-28718107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:83-347
               
               
               Cow position:chr2:51799138-51799427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 196

               
               
               Conread position:83-348
               
               
               Cow position:chr2:46971307-46971015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):119, 43

               
               
               Conread position:83-352
               
               
               Cow position:chr2:15166359-15166088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:83-352
               
               
               Cow position:chr2:28726662-28726368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 43

               
               
               Conread position:83-352
               
               
               Cow position:chr2:31749767-31750074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:83-352
               
               
               Cow position:chr2:69199125-69199422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:83-353
               
               
               Cow position:chr2:17328944-17328640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:83-353
               
               
               Cow position:chr2:24271414-24271124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr2:24594061-24593762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr2:44482470-44482755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):6, 42

               
               
               Conread position:83-354
               
               
               Cow position:chr2:42183565-42183265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):39, 272

               
               
               Conread position:83-354
               
               
               Cow position:chr2:59992049-59992354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:83-354
               
               
               Cow position:chr2:76110592-76110287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 247

               
               
               Conread position:83-355
               
               
               Cow position:chr2:387576-387885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr2:4016660-4016950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr2:12686590-12686894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 261

               
               
               Conread position:83-355
               
               
               Cow position:chr2:15250367-15250070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:83-355
               
               
               Cow position:chr2:19211861-19212163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):46, 114

               
               
               Conread position:83-355
               
               
               Cow position:chr2:36631151-36630862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 220

               
               
               Conread position:83-355
               
               
               Cow position:chr2:39566496-39566785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:83-355
               
               
               Cow position:chr2:40597772-40597469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 275

               
               
               Conread position:83-355
               
               
               Cow position:chr2:41158156-41157863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):35, 210

               
               
               Conread position:83-355
               
               
               Cow position:chr2:45565901-45565593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):39, 53

               
               
               Conread position:83-355
               
               
               Cow position:chr2:46312635-46312341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 205

               
               
               Conread position:83-355
               
               
               Cow position:chr2:59396851-59397166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):42, 150

               
               
               Conread position:83-355
               
               
               Cow position:chr2:70908133-70908426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:84-231
               
               
               Cow position:chr2:70824038-70824196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:84-232
               
               
               Cow position:chr2:64818-64972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:85-249
               
               
               Cow position:chr2:38640516-38640340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:86-231
               
               
               Cow position:chr2:39371607-39371453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 132

               
               
               Conread position:86-353
               
               
               Cow position:chr2:37347981-37347691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 203

               
               
               Conread position:86-354
               
               
               Cow position:chr2:19294786-19294482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-230
               
               
               Cow position:chr2:4096400-4096548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-235
               
               
               Cow position:chr2:43624344-43624504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:87-248
               
               
               Cow position:chr2:71486971-71486796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-251
               
               
               Cow position:chr2:45641068-45640904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:87-261
               
               
               Cow position:chr2:46239998-46240178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 135

               
               
               Conread position:87-351
               
               
               Cow position:chr2:68239397-68239127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 134

               
               
               Conread position:87-352
               
               
               Cow position:chr2:42192620-42192330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:87-353
               
               
               Cow position:chr2:14555577-14555859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):100, 35

               
               
               Conread position:87-353
               
               
               Cow position:chr2:50580529-50580264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):147, 28

               
               
               Conread position:87-353
               
               
               Cow position:chr2:51638729-51638447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):73, 52

               
               
               Conread position:87-353
               
               
               Cow position:chr2:56796897-56797162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):159, 35

               
               
               Conread position:87-354
               
               
               Cow position:chr2:21380208-21380506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:87-355
               
               
               Cow position:chr2:27173549-27173259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:87-355
               
               
               Cow position:chr2:42801231-42800934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 205

               
               
               Conread position:87-355
               
               
               Cow position:chr2:45478406-45478695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 240

               
               
               Conread position:87-355
               
               
               Cow position:chr2:46119572-46119871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr2:66480004-66480299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:88-353
               
               
               Cow position:chr2:32446167-32446443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:89-248
               
               
               Cow position:chr2:15219303-15219133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 165

               
               
               Conread position:92-248
               
               
               Cow position:chr2:6884642-6884477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:92-253
               
               
               Cow position:chr2:40257226-40257397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 161

               
               
               Conread position:92-355
               
               
               Cow position:chr2:39815105-39815394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:93-350
               
               
               Cow position:chr2:21879618-21879885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 198

               
               
               Conread position:94-231
               
               
               Cow position:chr2:25283302-25283151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:94-273
               
               
               Cow position:chr2:38947042-38947226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:95-248
               
               
               Cow position:chr2:21671691-21671535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 153

               
               
               Conread position:95-353
               
               
               Cow position:chr2:8295969-8295721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:95-354
               
               
               Cow position:chr2:38795584-38795868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:95-354
               
               
               Cow position:chr2:39409544-39409797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 206

               
               
               Conread position:97-355
               
               
               Cow position:chr2:45367465-45367183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:97-355
               
               
               Cow position:chr2:83410684-83410400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 254

               
               
               Conread position:98-253
               
               
               Cow position:chr2:39483653-39483499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:99-355
               
               
               Cow position:chr2:47097787-47098044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:100-248
               
               
               Cow position:chr2:46110887-46111035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:110-353
               
               
               Cow position:chr2:12051304-12051043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:123-355
               
               
               Cow position:chr2:27337636-27337885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):117, 14

               
               
               Conread position:124-355
               
               
               Cow position:chr2:44550701-44550949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):20, 206

               
               
               Conread position:126-353
               
               
               Cow position:chr2:42255582-42255327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:127-355
               
               
               Cow position:chr2:47047616-47047863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:130-353
               
               
               Cow position:chr2:73282438-73282665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:135-240
               
               
               Cow position:chr2:50368103-50367998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:135-349
               
               
               Cow position:chr2:81388823-81388587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 216

               
               
               Conread position:137-238
               
               
               Cow position:chr2:5815889-5815990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-246
               
               
               Cow position:chr2:1317755-1317865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:137-327
               
               
               Cow position:chr2:29860132-29859927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:137-334
               
               
               Cow position:chr2:40803131-40802913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):15, 210

               
               
               Conread position:137-353
               
               
               Cow position:chr2:70781221-70780988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):66, 170

               
               
               Conread position:137-354
               
               
               Cow position:chr2:16332176-16331960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):136, 15

               
               
               Conread position:137-354
               
               
               Cow position:chr2:41950141-41949919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):58, 149

               
               
               Conread position:137-354
               
               
               Cow position:chr2:67480105-67479874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):126, 105

               
               
               Conread position:137-355
               
               
               Cow position:chr2:55632905-55632667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):94, 69

               
               
               Conread position:141-355
               
               
               Cow position:chr2:6697378-6697606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):90, 47

               
               
               Conread position:143-355
               
               
               Cow position:chr2:28303443-28303214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:143-355
               
               
               Cow position:chr2:39263611-39263381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 224

               
               
               Conread position:144-230
               
               
               Cow position:chr2:81474095-81474009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr2:46053593-46053497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr2:12186753-12186650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr2:39242478-39242375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr2:39363125-39363022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr2:46014889-46014784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr2:67595897-67596002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:144-252
               
               
               Cow position:chr2:36117372-36117263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-326
               
               
               Cow position:chr2:54700579-54700370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:144-334
               
               
               Cow position:chr2:68870814-68870604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 187

               
               
               Conread position:144-349
               
               
               Cow position:chr2:49862776-49862567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 36

               
               
               Conread position:144-349
               
               
               Cow position:chr2:56846870-56846642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 177

               
               
               Conread position:144-352
               
               
               Cow position:chr2:55063004-55062778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:144-352
               
               
               Cow position:chr2:60462706-60462928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:144-352
               
               
               Cow position:chr2:60468085-60468307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:144-353
               
               
               Cow position:chr2:45439557-45439332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:144-353
               
               
               Cow position:chr2:78116240-78116455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):133, 89

               
               
               Conread position:144-354
               
               
               Cow position:chr2:44025500-44025265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr2:67745365-67745144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr2:7383566-7383790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 32

               
               
               Conread position:144-355
               
               
               Cow position:chr2:13001035-13000810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr2:14854427-14854204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:144-355
               
               
               Cow position:chr2:17940165-17940397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr2:29160030-29159800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):12, 202

               
               
               Conread position:144-355
               
               
               Cow position:chr2:31355820-31355598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):87, 149

               
               
               Conread position:144-355
               
               
               Cow position:chr2:36017291-36017526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):89, 202

               
               
               Conread position:144-355
               
               
               Cow position:chr2:54968129-54967896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:144-355
               
               
               Cow position:chr2:56867184-56867410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr2:57776470-57776243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr2:74249103-74249334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr2:80963526-80963757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:145-248
               
               
               Cow position:chr2:59974517-59974618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:145-253
               
               
               Cow position:chr2:46316992-46316885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:146-238
               
               
               Cow position:chr2:52466331-52466423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-355
               
               
               Cow position:chr2:65932086-65931853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:148-248
               
               
               Cow position:chr2:24722152-24722251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:148-252
               
               
               Cow position:chr2:7478823-7478927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):93, 64

               
               
               Conread position:149-229
               
               
               Cow position:chr2:44022974-44023054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:81
               
               
               Alignm identity:74
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-282
               
               
               Cow position:chr2:4445699-4445832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:149-329
               
               
               Cow position:chr2:19502367-19502564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:149-339
               
               
               Cow position:chr2:39663486-39663279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:149-348
               
               
               Cow position:chr2:67386356-67386583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:149-352
               
               
               Cow position:chr2:41185574-41185366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):84, 48

               
               
               Conread position:149-352
               
               
               Cow position:chr2:64131538-64131313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr2:7524014-7524243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:149-354
               
               
               Cow position:chr2:46230645-46230870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr2:16514895-16514674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 68

               
               
               Conread position:149-355
               
               
               Cow position:chr2:23301849-23301639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 110

               
               
               Conread position:149-355
               
               
               Cow position:chr2:47073305-47073084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 207

               
               
               Conread position:149-355
               
               
               Cow position:chr2:70674841-70674616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:150-248
               
               
               Cow position:chr2:30954480-30954577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:150-248
               
               
               Cow position:chr2:64773502-64773405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:150-351
               
               
               Cow position:chr2:42394509-42394311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):112, 11

               
               
               Conread position:150-355
               
               
               Cow position:chr2:6281924-6282124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):104, 67

               
               
               Conread position:150-355
               
               
               Cow position:chr2:39941592-39941379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr2:53430832-53430617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:150-355
               
               
               Cow position:chr2:62644709-62644478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:151-353
               
               
               Cow position:chr2:81927963-81927745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:152-354
               
               
               Cow position:chr2:41710968-41710766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 130

               
               
               Conread position:153-353
               
               
               Cow position:chr2:16505363-16505584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:153-355
               
               
               Cow position:chr2:13935821-13935598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):49, 181

               
               
               Conread position:153-355
               
               
               Cow position:chr2:47152437-47152644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):62, 108

               
               
               Conread position:154-351
               
               
               Cow position:chr2:32408396-32408597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):121, 147

               
               
               Conread position:155-352
               
               
               Cow position:chr2:44232341-44232558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:155-353
               
               
               Cow position:chr2:23847723-23847934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):70, 169

               
               
               Conread position:156-355
               
               
               Cow position:chr2:36575846-36575630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:161-353
               
               
               Cow position:chr2:14349874-14349677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 47

               
               
               Conread position:161-353
               
               
               Cow position:chr2:46194887-46194687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:162-354
               
               
               Cow position:chr2:20013025-20012827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:162-355
               
               
               Cow position:chr2:29734924-29734712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):78, 10

               
               
               Conread position:168-351
               
               
               Cow position:chr2:28653436-28653636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:173-352
               
               
               Cow position:chr2:37072891-37072710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 31

               
               
               Conread position:173-355
               
               
               Cow position:chr2:16564771-16564577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:175-353
               
               
               Cow position:chr2:5999039-5998837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:175-355
               
               
               Cow position:chr2:28318780-28318964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):24, 128

               
               
               Conread position:208-353
               
               
               Cow position:chr2:62978628-62978779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:219-355
               
               
               Cow position:chr2:81894308-81894454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:224-353
               
               
               Cow position:chr2:61187105-61187235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:226-354
               
               
               Cow position:chr2:34535131-34535266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:228-354
               
               
               Cow position:chr2:51824950-51824814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr2:66563209-66563342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr2:23493557-23493429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr2:32989749-32989876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:232-354
               
               
               Cow position:chr2:36936089-36936209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:232-355
               
               
               Cow position:chr2:12558517-12558640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:232-355
               
               
               Cow position:chr2:40882092-40881966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr2:61181612-61181490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 5

               
               
               Conread position:232-355
               
               
               Cow position:chr2:67313669-67313800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:239-355
               
               
               Cow position:chr2:46020918-46020795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:240-350
               
               
               Cow position:chr2:85498782-85498899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-353
               
               
               Cow position:chr2:80797677-80797562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:244-355
               
               
               Cow position:chr2:38272156-38272276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:267-355
               
               
               Cow position:chr2:6884201-6884113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:77
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:277-355
               
               
               Cow position:chr2:29269026-29268948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:72
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:277-355
               
               
               Cow position:chr2:51594731-51594653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:75
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-257
               
               
               Cow position:chr20:34848157-34847959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:71-345
               
               
               Cow position:chr20:16875324-16875588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 163

               
               
               Conread position:71-355
               
               
               Cow position:chr20:6248344-6248664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 286

               
               
               Conread position:72-355
               
               
               Cow position:chr20:14572122-14572428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:73-355
               
               
               Cow position:chr20:26077440-26077726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):168, 37

               
               
               Conread position:74-235
               
               
               Cow position:chr20:4786780-4786940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 129

               
               
               Conread position:75-238
               
               
               Cow position:chr20:32636082-32636260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:75-239
               
               
               Cow position:chr20:41313630-41313457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 125

               
               
               Conread position:75-248
               
               
               Cow position:chr20:19635928-19636116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:75-352
               
               
               Cow position:chr20:17470959-17470671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:75-355
               
               
               Cow position:chr20:14917520-14917235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:75-355
               
               
               Cow position:chr20:18622825-18622513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:75-355
               
               
               Cow position:chr20:35193009-35192709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:76-333
               
               
               Cow position:chr20:5385313-5385577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):12, 133

               
               
               Conread position:76-353
               
               
               Cow position:chr20:7658976-7659285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 128

               
               
               Conread position:76-355
               
               
               Cow position:chr20:4891869-4892161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 210

               
               
               Conread position:76-355
               
               
               Cow position:chr20:15568714-15569014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):38, 239

               
               
               Conread position:77-221
               
               
               Cow position:chr20:11661080-11661235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:77-279
               
               
               Cow position:chr20:31148399-31148177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:78-353
               
               
               Cow position:chr20:5645023-5644720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:81-240
               
               
               Cow position:chr20:1824387-1824559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-354
               
               
               Cow position:chr20:10236062-10235788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:81-355
               
               
               Cow position:chr20:5024722-5025014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:82-355
               
               
               Cow position:chr20:33532533-33532239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:83-230
               
               
               Cow position:chr20:21279623-21279465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr20:21902046-21901903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr20:2316185-2316347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr20:6054265-6054431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr20:14283165-14282998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr20:21941668-21941512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-234
               
               
               Cow position:chr20:38061531-38061691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr20:21372538-21372382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:83-238
               
               
               Cow position:chr20:14490484-14490317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:83-240
               
               
               Cow position:chr20:19919576-19919747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr20:25464804-25464976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-247
               
               
               Cow position:chr20:14755601-14755777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):39, 174

               
               
               Conread position:83-248
               
               
               Cow position:chr20:7934520-7934344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 52

               
               
               Conread position:83-248
               
               
               Cow position:chr20:38934824-38934995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:83-325
               
               
               Cow position:chr20:13023260-13023532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-335
               
               
               Cow position:chr20:5576430-5576169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):39, 52

               
               
               Conread position:83-344
               
               
               Cow position:chr20:20892434-20892725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:83-349
               
               
               Cow position:chr20:23540929-23541220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-350
               
               
               Cow position:chr20:29755020-29754722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:83-351
               
               
               Cow position:chr20:747174-746882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):69, 48

               
               
               Conread position:83-351
               
               
               Cow position:chr20:11188581-11188863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:83-353
               
               
               Cow position:chr20:11741074-11741367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:83-353
               
               
               Cow position:chr20:29805435-29805726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):42, 55

               
               
               Conread position:83-354
               
               
               Cow position:chr20:33434917-33435234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr20:40726371-40726657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:83-355
               
               
               Cow position:chr20:7737992-7738295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr20:8429984-8429681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 94

               
               
               Conread position:83-355
               
               
               Cow position:chr20:11359397-11359692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):69, 265

               
               
               Conread position:84-248
               
               
               Cow position:chr20:20158372-20158196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:84-252
               
               
               Cow position:chr20:16760007-16760171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:85-285
               
               
               Cow position:chr20:7438617-7438826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 167

               
               
               Conread position:86-231
               
               
               Cow position:chr20:31845049-31845207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:86-353
               
               
               Cow position:chr20:11008412-11008104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):36, 255

               
               
               Conread position:87-240
               
               
               Cow position:chr20:37273231-37273067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:87-353
               
               
               Cow position:chr20:34108327-34108045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):59, 67

               
               
               Conread position:88-238
               
               
               Cow position:chr20:11499240-11499079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:88-250
               
               
               Cow position:chr20:13617448-13617286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:92-253
               
               
               Cow position:chr20:14880019-14879846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 163

               
               
               Conread position:93-352
               
               
               Cow position:chr20:6962107-6962375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):29, 159

               
               
               Conread position:101-270
               
               
               Cow position:chr20:2823078-2822908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:103-355
               
               
               Cow position:chr20:6424176-6423903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:124-248
               
               
               Cow position:chr20:20739103-20739225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:133-228
               
               
               Cow position:chr20:24522473-24522378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:133-230
               
               
               Cow position:chr20:18831702-18831799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-352
               
               
               Cow position:chr20:9923739-9923523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):119, 190

               
               
               Conread position:137-355
               
               
               Cow position:chr20:19751479-19751239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr20:34202807-34202581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):95, 132

               
               
               Conread position:137-355
               
               
               Cow position:chr20:39417731-39417966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:141-355
               
               
               Cow position:chr20:3568922-3569131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):124, 103

               
               
               Conread position:142-355
               
               
               Cow position:chr20:9473464-9473683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):112, 69

               
               
               Conread position:144-231
               
               
               Cow position:chr20:37358021-37357934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:78
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-232
               
               
               Cow position:chr20:8442291-8442378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:77
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr20:15515275-15515371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr20:24002766-24002670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:80
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr20:20967486-20967383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr20:24712006-24711902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 99

               
               
               Conread position:144-248
               
               
               Cow position:chr20:34097788-34097892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-350
               
               
               Cow position:chr20:7550391-7550177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 193

               
               
               Conread position:144-351
               
               
               Cow position:chr20:354736-354961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr20:13876546-13876770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):76, 207

               
               
               Conread position:144-353
               
               
               Cow position:chr20:21345598-21345361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr20:23506308-23506536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):89, 26

               
               
               Conread position:144-355
               
               
               Cow position:chr20:3320979-3321210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr20:7441973-7442196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:144-355
               
               
               Cow position:chr20:14564216-14563985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr20:17251882-17251647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr20:19328553-19328333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr20:32672547-32672324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 73

               
               
               Conread position:146-351
               
               
               Cow position:chr20:4945091-4945310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):71, 165

               
               
               Conread position:146-353
               
               
               Cow position:chr20:7806406-7806622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 189

               
               
               Conread position:147-355
               
               
               Cow position:chr20:22959186-22959410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):86, 53

               
               
               Conread position:148-247
               
               
               Cow position:chr20:17544785-17544687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:148-273
               
               
               Cow position:chr20:5365087-5364950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:148-354
               
               
               Cow position:chr20:30817679-30817467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):106, 51

               
               
               Conread position:148-355
               
               
               Cow position:chr20:9537293-9537068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr20:18392111-18392327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):78, 131

               
               
               Conread position:149-353
               
               
               Cow position:chr20:36741623-36741409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr20:38551524-38551307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:149-354
               
               
               Cow position:chr20:21721370-21721168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 153

               
               
               Conread position:149-355
               
               
               Cow position:chr20:11481975-11482203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 20

               
               
               Conread position:149-355
               
               
               Cow position:chr20:19090980-19091188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 112

               
               
               Conread position:149-355
               
               
               Cow position:chr20:29845210-29844982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:150-257
               
               
               Cow position:chr20:14499478-14499585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 101

               
               
               Conread position:150-350
               
               
               Cow position:chr20:31311669-31311468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):103, 75

               
               
               Conread position:150-353
               
               
               Cow position:chr20:5636640-5636417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 160

               
               
               Conread position:150-353
               
               
               Cow position:chr20:40422943-40423156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:150-354
               
               
               Cow position:chr20:16492232-16492004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 24

               
               
               Conread position:150-355
               
               
               Cow position:chr20:20984151-20983928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr20:40303728-40303937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):87, 153

               
               
               Conread position:154-353
               
               
               Cow position:chr20:36633967-36633752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:155-353
               
               
               Cow position:chr20:4621200-4621411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:158-353
               
               
               Cow position:chr20:12085286-12085491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 132

               
               
               Conread position:158-355
               
               
               Cow position:chr20:36040626-36040405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 166

               
               
               Conread position:160-353
               
               
               Cow position:chr20:15235901-15235702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):73, 127

               
               
               Conread position:196-355
               
               
               Cow position:chr20:13994910-13994745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:223-355
               
               
               Cow position:chr20:11923175-11923311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):32, 25

               
               
               Conread position:229-355
               
               
               Cow position:chr20:14735736-14735607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr20:24000735-24000866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr20:28832033-28831900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:233-355
               
               
               Cow position:chr20:37357669-37357538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:235-353
               
               
               Cow position:chr20:9379465-9379343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:240-353
               
               
               Cow position:chr20:37272769-37272647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr20:35907002-35907120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:244-355
               
               
               Cow position:chr20:17733731-17733843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:278-354
               
               
               Cow position:chr20:34847685-34847609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:77
               
               
               Alignm identity:71
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-248
               
               
               Cow position:chr21:28030554-28030370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 165

               
               
               Conread position:71-253
               
               
               Cow position:chr21:32559096-32559287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 181

               
               
               Conread position:72-231
               
               
               Cow position:chr21:21940136-21940308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:72-235
               
               
               Cow position:chr21:36817186-36817033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:73-231
               
               
               Cow position:chr21:3379480-3379653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:74-355
               
               
               Cow position:chr21:20153229-20152906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):48, 123

               
               
               Conread position:75-238
               
               
               Cow position:chr21:31658882-31659059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:75-248
               
               
               Cow position:chr21:43642789-43642620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:75-355
               
               
               Cow position:chr21:15444810-15445121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:76-231
               
               
               Cow position:chr21:23568495-23568327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:76-248
               
               
               Cow position:chr21:19868692-19868874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:76-248
               
               
               Cow position:chr21:42189490-42189676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:76-322
               
               
               Cow position:chr21:44724106-44724380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:77-240
               
               
               Cow position:chr21:37837808-37837976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 68

               
               
               Conread position:77-250
               
               
               Cow position:chr21:28618045-28617867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:77-259
               
               
               Cow position:chr21:2785232-2785423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):45, 163

               
               
               Conread position:77-349
               
               
               Cow position:chr21:30592045-30592346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 264

               
               
               Conread position:77-353
               
               
               Cow position:chr21:29014647-29014959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:77-353
               
               
               Cow position:chr21:33413827-33414131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 255

               
               
               Conread position:77-355
               
               
               Cow position:chr21:36911008-36910692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 174

               
               
               Conread position:78-227
               
               
               Cow position:chr21:46612536-46612694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:78-230
               
               
               Cow position:chr21:7768696-7768538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:78-250
               
               
               Cow position:chr21:745438-745256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):44, 127

               
               
               Conread position:78-355
               
               
               Cow position:chr21:82327-82031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:81-249
               
               
               Cow position:chr21:4109042-4108857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 181

               
               
               Conread position:81-352
               
               
               Cow position:chr21:7394634-7394337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 128

               
               
               Conread position:81-355
               
               
               Cow position:chr21:41621393-41621076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:81-355
               
               
               Cow position:chr21:43241106-43240819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):6, 139

               
               
               Conread position:82-235
               
               
               Cow position:chr21:15012695-15012534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:82-248
               
               
               Cow position:chr21:20174576-20174399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-248
               
               
               Cow position:chr21:30658125-30657951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:82-321
               
               
               Cow position:chr21:802059-802321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:82-350
               
               
               Cow position:chr21:742538-742245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 273

               
               
               Conread position:82-355
               
               
               Cow position:chr21:4281618-4281919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):8, 118

               
               
               Conread position:82-355
               
               
               Cow position:chr21:27863255-27863563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:83-230
               
               
               Cow position:chr21:29658537-29658376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):39, 139

               
               
               Conread position:83-234
               
               
               Cow position:chr21:18495478-18495317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:83-235
               
               
               Cow position:chr21:641847-641682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr21:6851428-6851267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr21:24757200-24757034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-237
               
               
               Cow position:chr21:30205131-30205280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr21:4269200-4269034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 156

               
               
               Conread position:83-240
               
               
               Cow position:chr21:15869949-15869780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:83-240
               
               
               Cow position:chr21:30938403-30938576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-246
               
               
               Cow position:chr21:36879620-36879787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 157

               
               
               Conread position:83-248
               
               
               Cow position:chr21:40059279-40059113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 35

               
               
               Conread position:83-248
               
               
               Cow position:chr21:44214374-44214210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:83-250
               
               
               Cow position:chr21:6945623-6945454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 61

               
               
               Conread position:83-341
               
               
               Cow position:chr21:13395844-13395564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:83-352
               
               
               Cow position:chr21:30217952-30218232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):39, 254

               
               
               Conread position:83-352
               
               
               Cow position:chr21:33580674-33580376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 133

               
               
               Conread position:83-353
               
               
               Cow position:chr21:10673373-10673082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):39, 122

               
               
               Conread position:83-353
               
               
               Cow position:chr21:45356078-45355790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):149, 69

               
               
               Conread position:83-354
               
               
               Cow position:chr21:21907178-21907476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr21:23587135-23586833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:83-354
               
               
               Cow position:chr21:30236579-30236864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:83-354
               
               
               Cow position:chr21:32339482-32339784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr21:33791134-33791412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr21:957932-957625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 112

               
               
               Conread position:83-355
               
               
               Cow position:chr21:5427190-5426893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:83-355
               
               
               Cow position:chr21:6051768-6051459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 257

               
               
               Conread position:83-355
               
               
               Cow position:chr21:28244730-28244421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr21:28919268-28919572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr21:33996987-33997275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 141

               
               
               Conread position:83-355
               
               
               Cow position:chr21:40134409-40134112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr21:40266387-40266076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr21:45970916-45971219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:84-230
               
               
               Cow position:chr21:34581447-34581591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:84-231
               
               
               Cow position:chr21:9219281-9219136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:84-232
               
               
               Cow position:chr21:11678060-11678214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:84-240
               
               
               Cow position:chr21:6292011-6291836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:84-351
               
               
               Cow position:chr21:18041626-18041892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:85-273
               
               
               Cow position:chr21:21159064-21158865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:85-352
               
               
               Cow position:chr21:17184179-17183878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:86-231
               
               
               Cow position:chr21:27409478-27409633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:87-240
               
               
               Cow position:chr21:30848689-30848851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-248
               
               
               Cow position:chr21:6998200-6998030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 165

               
               
               Conread position:87-249
               
               
               Cow position:chr21:12298846-12298674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-253
               
               
               Cow position:chr21:46451713-46451876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:87-308
               
               
               Cow position:chr21:36508489-36508240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:87-336
               
               
               Cow position:chr21:31159645-31159373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:87-341
               
               
               Cow position:chr21:44860881-44861145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 28

               
               
               Conread position:87-351
               
               
               Cow position:chr21:1059317-1059034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):68, 27

               
               
               Conread position:87-353
               
               
               Cow position:chr21:15543980-15544264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:87-353
               
               
               Cow position:chr21:38901022-38900732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:87-355
               
               
               Cow position:chr21:10823799-10823519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):150, 35

               
               
               Conread position:87-355
               
               
               Cow position:chr21:12461710-12462018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr21:20759714-20759983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:87-355
               
               
               Cow position:chr21:27521083-27521379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:87-355
               
               
               Cow position:chr21:34738830-34738562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):37, 155

               
               
               Conread position:88-212
               
               
               Cow position:chr21:38867120-38867249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:88-250
               
               
               Cow position:chr21:16152698-16152521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:89-231
               
               
               Cow position:chr21:32536648-32536495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:95-354
               
               
               Cow position:chr21:14760808-14760527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):30, 244

               
               
               Conread position:97-247
               
               
               Cow position:chr21:2294261-2294109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):26, 142

               
               
               Conread position:98-240
               
               
               Cow position:chr21:13225947-13225805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:106-253
               
               
               Cow position:chr21:6735960-6736111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 6

               
               
               Conread position:131-354
               
               
               Cow position:chr21:949512-949722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 73

               
               
               Conread position:137-247
               
               
               Cow position:chr21:29418761-29418652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:137-333
               
               
               Cow position:chr21:10538062-10538276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 192

               
               
               Conread position:137-355
               
               
               Cow position:chr21:10004693-10004935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr21:18790373-18790607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):90, 74

               
               
               Conread position:137-355
               
               
               Cow position:chr21:27810580-27810360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):99, 95

               
               
               Conread position:137-355
               
               
               Cow position:chr21:37014235-37014450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):117, 65

               
               
               Conread position:138-248
               
               
               Cow position:chr21:37361049-37361161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:139-350
               
               
               Cow position:chr21:15976823-15976591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):90, 61

               
               
               Conread position:144-222
               
               
               Cow position:chr21:31258652-31258574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:71
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr21:713129-713025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 99

               
               
               Conread position:144-248
               
               
               Cow position:chr21:42017417-42017520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-305
               
               
               Cow position:chr21:7686626-7686788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):105, 96

               
               
               Conread position:144-310
               
               
               Cow position:chr21:8545837-8546021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-336
               
               
               Cow position:chr21:42905212-42905405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):93, 123

               
               
               Conread position:144-351
               
               
               Cow position:chr21:18471757-18471545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 142

               
               
               Conread position:144-352
               
               
               Cow position:chr21:33905-33676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:180
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr21:33563189-33562968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):93, 72

               
               
               Conread position:144-353
               
               
               Cow position:chr21:47763932-47764161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):98, 48

               
               
               Conread position:144-354
               
               
               Cow position:chr21:976955-977191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 230

               
               
               Conread position:144-354
               
               
               Cow position:chr21:19514039-19513818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 125

               
               
               Conread position:144-355
               
               
               Cow position:chr21:10410408-10410172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):80, 135

               
               
               Conread position:144-355
               
               
               Cow position:chr21:11706581-11706793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 131

               
               
               Conread position:144-355
               
               
               Cow position:chr21:19059908-19060135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 9

               
               
               Conread position:144-355
               
               
               Cow position:chr21:27429637-27429418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 171

               
               
               Conread position:144-355
               
               
               Cow position:chr21:29979583-29979804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 171

               
               
               Conread position:144-355
               
               
               Cow position:chr21:34049703-34049927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 165

               
               
               Conread position:144-355
               
               
               Cow position:chr21:41597997-41597773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 147

               
               
               Conread position:144-355
               
               
               Cow position:chr21:49699854-49700082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):93, 172

               
               
               Conread position:145-252
               
               
               Cow position:chr21:37706230-37706338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:145-349
               
               
               Cow position:chr21:17285265-17285070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):108, 41

               
               
               Conread position:146-248
               
               
               Cow position:chr21:40475682-40475581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:146-344
               
               
               Cow position:chr21:20160860-20160641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:146-353
               
               
               Cow position:chr21:15584235-15584466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:147-231
               
               
               Cow position:chr21:8686960-8687044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:76
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:148-341
               
               
               Cow position:chr21:734771-734562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):86, 65

               
               
               Conread position:148-355
               
               
               Cow position:chr21:3818390-3818161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:148-355
               
               
               Cow position:chr21:13898347-13898137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):124, 74

               
               
               Conread position:149-250
               
               
               Cow position:chr21:48478719-48478819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 36

               
               
               Conread position:149-351
               
               
               Cow position:chr21:11360207-11359995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):44, 172

               
               
               Conread position:149-351
               
               
               Cow position:chr21:42384690-42384466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr21:11779361-11779575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):84, 58

               
               
               Conread position:149-353
               
               
               Cow position:chr21:26245095-26244874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):85, 181

               
               
               Conread position:149-355
               
               
               Cow position:chr21:396048-395822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr21:10001256-10001027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr21:28924291-28924067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 193

               
               
               Conread position:149-355
               
               
               Cow position:chr21:47713829-47714051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):91, 23

               
               
               Conread position:150-353
               
               
               Cow position:chr21:30606916-30607135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:150-355
               
               
               Cow position:chr21:21169316-21169541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr21:24642692-24642472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:152-353
               
               
               Cow position:chr21:21077487-21077280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 74

               
               
               Conread position:153-348
               
               
               Cow position:chr21:22210070-22210285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):80, 8

               
               
               Conread position:153-352
               
               
               Cow position:chr21:18779799-18780016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:156-353
               
               
               Cow position:chr21:38267888-38268085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):85, 149

               
               
               Conread position:156-354
               
               
               Cow position:chr21:8235388-8235601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:159-355
               
               
               Cow position:chr21:47363563-47363786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:160-355
               
               
               Cow position:chr21:28955671-28955460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:160-355
               
               
               Cow position:chr21:31253703-31253496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:160-355
               
               
               Cow position:chr21:34659178-34658986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):86, 76

               
               
               Conread position:162-355
               
               
               Cow position:chr21:32237447-32237247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:165-348
               
               
               Cow position:chr21:19258983-19258789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):75, 173

               
               
               Conread position:175-353
               
               
               Cow position:chr21:39401745-39401548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 37

               
               
               Conread position:175-355
               
               
               Cow position:chr21:13738707-13738520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:181-355
               
               
               Cow position:chr21:34390826-34391023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:181-355
               
               
               Cow position:chr21:40432594-40432402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 140

               
               
               Conread position:189-355
               
               
               Cow position:chr21:11251010-11250831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:229-355
               
               
               Cow position:chr21:33359949-33360081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:232-352
               
               
               Cow position:chr21:10727360-10727232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr21:41878554-41878425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:233-352
               
               
               Cow position:chr21:39450079-39450208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:233-355
               
               
               Cow position:chr21:24765364-24765242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 15

               
               
               Conread position:233-355
               
               
               Cow position:chr21:28882217-28882087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:234-355
               
               
               Cow position:chr21:5636642-5636766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr21:7391202-7391324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:71-244
               
               
               Cow position:chr22:14236695-14236877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:71-250
               
               
               Cow position:chr22:29219693-29219889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 147

               
               
               Conread position:71-355
               
               
               Cow position:chr22:15668273-15668588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:72-284
               
               
               Cow position:chr22:23675766-23676000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:73-248
               
               
               Cow position:chr22:4563562-4563376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:73-352
               
               
               Cow position:chr22:29961945-29962258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:73-353
               
               
               Cow position:chr22:4135799-4135505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:73-355
               
               
               Cow position:chr22:12829403-12829726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:74-231
               
               
               Cow position:chr22:34609201-34609036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:74-349
               
               
               Cow position:chr22:33522671-33522974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 291

               
               
               Conread position:74-355
               
               
               Cow position:chr22:23735806-23736126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 287

               
               
               Conread position:75-236
               
               
               Cow position:chr22:15695529-15695698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:75-324
               
               
               Cow position:chr22:24583868-24584137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):48, 238

               
               
               Conread position:75-355
               
               
               Cow position:chr22:25221701-25222014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:76-220
               
               
               Cow position:chr22:17897876-17897725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:76-350
               
               
               Cow position:chr22:25247112-25246806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 284

               
               
               Conread position:76-354
               
               
               Cow position:chr22:10122571-10122277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):63, 259

               
               
               Conread position:77-235
               
               
               Cow position:chr22:2201936-2201768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:77-235
               
               
               Cow position:chr22:9977996-9977838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:77-240
               
               
               Cow position:chr22:43730485-43730309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):10, 170

               
               
               Conread position:77-248
               
               
               Cow position:chr22:27401935-27401753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 177

               
               
               Conread position:78-230
               
               
               Cow position:chr22:10295229-10295069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 142

               
               
               Conread position:78-244
               
               
               Cow position:chr22:27681925-27681740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:78-253
               
               
               Cow position:chr22:25742764-25742940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:78-354
               
               
               Cow position:chr22:8412732-8412414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:81-232
               
               
               Cow position:chr22:19549039-19548886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:81-235
               
               
               Cow position:chr22:21041957-21042118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:81-240
               
               
               Cow position:chr22:1074465-1074288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 175

               
               
               Conread position:81-240
               
               
               Cow position:chr22:40072159-40072000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:81-245
               
               
               Cow position:chr22:26945373-26945543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr22:12447646-12447472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:81-248
               
               
               Cow position:chr22:30687216-30687042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:81-345
               
               
               Cow position:chr22:24732363-24732655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:81-349
               
               
               Cow position:chr22:33485427-33485711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:81-352
               
               
               Cow position:chr22:27828576-27828272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:81-355
               
               
               Cow position:chr22:5016688-5016398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):42, 194

               
               
               Conread position:82-231
               
               
               Cow position:chr22:5712781-5712618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:82-354
               
               
               Cow position:chr22:7154072-7153772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-355
               
               
               Cow position:chr22:4075688-4076004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-355
               
               
               Cow position:chr22:7913651-7913365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):40, 157

               
               
               Conread position:82-355
               
               
               Cow position:chr22:21905665-21905378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:82-355
               
               
               Cow position:chr22:27171072-27171370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:82-355
               
               
               Cow position:chr22:43398196-43397898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr22:4054407-4054559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr22:4656850-4657010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr22:20035015-20034862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:83-231
               
               
               Cow position:chr22:12313615-12313457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 133

               
               
               Conread position:83-231
               
               
               Cow position:chr22:38939756-38939908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):39, 139

               
               
               Conread position:83-232
               
               
               Cow position:chr22:12741086-12741241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):6, 97

               
               
               Conread position:83-239
               
               
               Cow position:chr22:35029455-35029293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 131

               
               
               Conread position:83-240
               
               
               Cow position:chr22:23630160-23630328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:83-240
               
               
               Cow position:chr22:28672330-28672168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:83-243
               
               
               Cow position:chr22:11836878-11837042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:83-245
               
               
               Cow position:chr22:10913854-10913682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-247
               
               
               Cow position:chr22:16564341-16564164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:83-247
               
               
               Cow position:chr22:27275661-27275477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr22:4736222-4736039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 178

               
               
               Conread position:83-248
               
               
               Cow position:chr22:12777188-12777361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 168

               
               
               Conread position:83-248
               
               
               Cow position:chr22:16346589-16346410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-250
               
               
               Cow position:chr22:11049509-11049327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 173

               
               
               Conread position:83-254
               
               
               Cow position:chr22:11147105-11146927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 132

               
               
               Conread position:83-273
               
               
               Cow position:chr22:39622723-39622526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:83-286
               
               
               Cow position:chr22:37145516-37145288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-326
               
               
               Cow position:chr22:12749717-12749985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 245

               
               
               Conread position:83-335
               
               
               Cow position:chr22:25809085-25809365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:83-336
               
               
               Cow position:chr22:5595612-5595904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):39, 273

               
               
               Conread position:83-340
               
               
               Cow position:chr22:1065303-1065023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 214

               
               
               Conread position:83-343
               
               
               Cow position:chr22:40864683-40864422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:83-351
               
               
               Cow position:chr22:8447103-8446828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):44, 168

               
               
               Conread position:83-351
               
               
               Cow position:chr22:22908364-22908083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:83-351
               
               
               Cow position:chr22:25629619-25629873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):171, 42

               
               
               Conread position:83-352
               
               
               Cow position:chr22:8090339-8090640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-352
               
               
               Cow position:chr22:40387347-40387048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):39, 249

               
               
               Conread position:83-353
               
               
               Cow position:chr22:2524146-2523851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-353
               
               
               Cow position:chr22:8883206-8882906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):34, 266

               
               
               Conread position:83-353
               
               
               Cow position:chr22:21746834-21746530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:83-353
               
               
               Cow position:chr22:29954818-29955112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 198

               
               
               Conread position:83-353
               
               
               Cow position:chr22:40374802-40374495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:83-353
               
               
               Cow position:chr22:42685078-42684794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):39, 132

               
               
               Conread position:83-354
               
               
               Cow position:chr22:41854098-41853786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr22:1309542-1309843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):29, 41

               
               
               Conread position:83-355
               
               
               Cow position:chr22:8733150-8733446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):39, 261

               
               
               Conread position:83-355
               
               
               Cow position:chr22:9372722-9372408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):39, 270

               
               
               Conread position:83-355
               
               
               Cow position:chr22:10293127-10292850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):171, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr22:12316004-12315697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 140

               
               
               Conread position:83-355
               
               
               Cow position:chr22:16291737-16292032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):39, 280

               
               
               Conread position:83-355
               
               
               Cow position:chr22:21568187-21567882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:83-355
               
               
               Cow position:chr22:22860715-22861024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr22:25943655-25943362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 237

               
               
               Conread position:83-355
               
               
               Cow position:chr22:27322494-27322203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr22:28937746-28938013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:83-355
               
               
               Cow position:chr22:34895152-34894857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:84-351
               
               
               Cow position:chr22:14142929-14143223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):38, 118

               
               
               Conread position:84-353
               
               
               Cow position:chr22:14372362-14372073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 235

               
               
               Conread position:84-355
               
               
               Cow position:chr22:534684-534384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:85-227
               
               
               Cow position:chr22:11790180-11790019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:85-235
               
               
               Cow position:chr22:6359999-6360156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:85-248
               
               
               Cow position:chr22:3282635-3282806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 99

               
               
               Conread position:85-353
               
               
               Cow position:chr22:1911844-1911557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 276

               
               
               Conread position:86-231
               
               
               Cow position:chr22:5467172-5467320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:86-286
               
               
               Cow position:chr22:8540068-8539849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 209

               
               
               Conread position:86-352
               
               
               Cow position:chr22:6622058-6622356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):32, 130

               
               
               Conread position:87-228
               
               
               Cow position:chr22:23249545-23249692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-248
               
               
               Cow position:chr22:44684667-44684503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 118

               
               
               Conread position:87-250
               
               
               Cow position:chr22:13769644-13769487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):146, 37

               
               
               Conread position:87-251
               
               
               Cow position:chr22:1830235-1830061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 166

               
               
               Conread position:87-305
               
               
               Cow position:chr22:8287372-8287126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-344
               
               
               Cow position:chr22:21205495-21205237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:87-354
               
               
               Cow position:chr22:20627025-20626727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 267

               
               
               Conread position:87-354
               
               
               Cow position:chr22:37202040-37201740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:88-217
               
               
               Cow position:chr22:21943736-21943609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):6, 34

               
               
               Conread position:88-331
               
               
               Cow position:chr22:3470480-3470211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:88-336
               
               
               Cow position:chr22:530387-530662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 268

               
               
               Conread position:89-349
               
               
               Cow position:chr22:10532683-10532400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:95-248
               
               
               Cow position:chr22:16724504-16724671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 162

               
               
               Conread position:95-342
               
               
               Cow position:chr22:17126631-17126355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:95-352
               
               
               Cow position:chr22:9597401-9597691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):27, 283

               
               
               Conread position:103-271
               
               
               Cow position:chr22:3945533-3945354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:103-325
               
               
               Cow position:chr22:10553523-10553770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:108-353
               
               
               Cow position:chr22:12967918-12968182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:113-307
               
               
               Cow position:chr22:13878326-13878117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):116, 25

               
               
               Conread position:116-352
               
               
               Cow position:chr22:5282645-5282398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):7, 154

               
               
               Conread position:123-353
               
               
               Cow position:chr22:18218777-18219000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):161, 18

               
               
               Conread position:125-355
               
               
               Cow position:chr22:24734185-24734427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):106, 13

               
               
               Conread position:126-354
               
               
               Cow position:chr22:13687964-13688216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:131-355
               
               
               Cow position:chr22:16251440-16251680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:133-355
               
               
               Cow position:chr22:3534063-3533829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 144

               
               
               Conread position:134-355
               
               
               Cow position:chr22:43291775-43292011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):94, 7

               
               
               Conread position:137-227
               
               
               Cow position:chr22:15737360-15737270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:77
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr22:2704424-2704314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr22:3301213-3301325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:137-352
               
               
               Cow position:chr22:34726791-34726563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:137-353
               
               
               Cow position:chr22:3965312-3965073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:137-354
               
               
               Cow position:chr22:16621307-16621062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:137-354
               
               
               Cow position:chr22:23857173-23856935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):17, 139

               
               
               Conread position:137-355
               
               
               Cow position:chr22:3950378-3950137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr22:16044290-16044534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr22:24175772-24175996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 11

               
               
               Conread position:137-355
               
               
               Cow position:chr22:27274574-27274806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):96, 132

               
               
               Conread position:137-355
               
               
               Cow position:chr22:33447955-33448196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:143-293
               
               
               Cow position:chr22:6486082-6485932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 108

               
               
               Conread position:143-344
               
               
               Cow position:chr22:1529068-1529272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:143-355
               
               
               Cow position:chr22:14924612-14924847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:144-227
               
               
               Cow position:chr22:1106186-1106103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:75
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr22:23265533-23265620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr22:26107239-26107135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr22:23398285-23398388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-252
               
               
               Cow position:chr22:25312628-25312521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-252
               
               
               Cow position:chr22:29389898-29389789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-275
               
               
               Cow position:chr22:44384384-44384522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-305
               
               
               Cow position:chr22:13719913-13720087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 168

               
               
               Conread position:144-333
               
               
               Cow position:chr22:8331117-8330936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):100, 112

               
               
               Conread position:144-351
               
               
               Cow position:chr22:4535211-4535434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:144-353
               
               
               Cow position:chr22:3252840-3253060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:144-353
               
               
               Cow position:chr22:24610974-24611193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:144-353
               
               
               Cow position:chr22:25764376-25764596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 73

               
               
               Conread position:144-355
               
               
               Cow position:chr22:6852466-6852698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:144-355
               
               
               Cow position:chr22:12389218-12388982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr22:14378576-14378794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 190

               
               
               Conread position:144-355
               
               
               Cow position:chr22:15024991-15025224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr22:15959658-15959883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 123

               
               
               Conread position:144-355
               
               
               Cow position:chr22:16339974-16339767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 98

               
               
               Conread position:144-355
               
               
               Cow position:chr22:18926475-18926240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 186

               
               
               Conread position:144-355
               
               
               Cow position:chr22:26659160-26658940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:144-355
               
               
               Cow position:chr22:29642228-29642000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):73, 190

               
               
               Conread position:144-355
               
               
               Cow position:chr22:32698879-32698649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):89, 174

               
               
               Conread position:144-355
               
               
               Cow position:chr22:45513410-45513629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):89, 80

               
               
               Conread position:145-355
               
               
               Cow position:chr22:3960187-3960398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:145-355
               
               
               Cow position:chr22:32651609-32651389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:146-253
               
               
               Cow position:chr22:2627697-2627592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:146-332
               
               
               Cow position:chr22:2409015-2409212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):95, 182

               
               
               Conread position:146-353
               
               
               Cow position:chr22:34712842-34712611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:146-355
               
               
               Cow position:chr22:15020296-15020511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 96

               
               
               Conread position:148-355
               
               
               Cow position:chr22:24628543-24628764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:148-355
               
               
               Cow position:chr22:31510263-31510483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 158

               
               
               Conread position:149-318
               
               
               Cow position:chr22:10533707-10533515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:149-333
               
               
               Cow position:chr22:23750783-23750986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:149-348
               
               
               Cow position:chr22:3842731-3842510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:149-354
               
               
               Cow position:chr22:27066492-27066278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):129, 90

               
               
               Conread position:150-318
               
               
               Cow position:chr22:45505892-45506083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):83, 172

               
               
               Conread position:150-354
               
               
               Cow position:chr22:23176328-23176551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 166

               
               
               Conread position:150-355
               
               
               Cow position:chr22:26316569-26316356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:151-245
               
               
               Cow position:chr22:1728343-1728248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:151-354
               
               
               Cow position:chr22:15914940-15915156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):80, 20

               
               
               Conread position:151-355
               
               
               Cow position:chr22:16823202-16822988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:151-355
               
               
               Cow position:chr22:44180705-44180477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):82, 205

               
               
               Conread position:152-354
               
               
               Cow position:chr22:13286559-13286337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:152-355
               
               
               Cow position:chr22:877626-877399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:153-344
               
               
               Cow position:chr22:27047303-27047508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:153-350
               
               
               Cow position:chr22:3264148-3264357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:153-354
               
               
               Cow position:chr22:10323990-10323789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:153-354
               
               
               Cow position:chr22:23855080-23854860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):78, 36

               
               
               Conread position:153-355
               
               
               Cow position:chr22:22553150-22553349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):101, 26

               
               
               Conread position:153-355
               
               
               Cow position:chr22:26421821-26422026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 130

               
               
               Conread position:153-355
               
               
               Cow position:chr22:28057940-28058167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:154-353
               
               
               Cow position:chr22:46567785-46568001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:154-355
               
               
               Cow position:chr22:28665392-28665171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:156-349
               
               
               Cow position:chr22:38980993-38980788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:162-355
               
               
               Cow position:chr22:12946081-12946281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 126

               
               
               Conread position:186-355
               
               
               Cow position:chr22:20687362-20687189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:219-355
               
               
               Cow position:chr22:26969812-26969669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:232-355
               
               
               Cow position:chr22:6122888-6123015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 91

               
               
               Conread position:232-355
               
               
               Cow position:chr22:27681733-27681601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:235-352
               
               
               Cow position:chr22:5042327-5042206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:240-346
               
               
               Cow position:chr22:11497209-11497094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr22:10363076-10362955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr22:25342024-25341906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:242-355
               
               
               Cow position:chr22:16917205-16917317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:273-355
               
               
               Cow position:chr22:5467400-5467483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:77
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:277-355
               
               
               Cow position:chr22:3945139-3945061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:71
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:277-355
               
               
               Cow position:chr22:41044948-41045026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:71
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-267
               
               
               Cow position:chr23:22396225-22396444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 142

               
               
               Conread position:71-231
               
               
               Cow position:chr23:5743298-5743140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:72-227
               
               
               Cow position:chr23:13073636-13073797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:72-248
               
               
               Cow position:chr23:36200612-36200426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):50, 119

               
               
               Conread position:73-209
               
               
               Cow position:chr23:18710260-18710399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:73-232
               
               
               Cow position:chr23:8063740-8063581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 79

               
               
               Conread position:74-329
               
               
               Cow position:chr23:19872489-19872758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:74-355
               
               
               Cow position:chr23:40081710-40081422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:75-277
               
               
               Cow position:chr23:22674232-22674430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:77-351
               
               
               Cow position:chr23:29345569-29345862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 266

               
               
               Conread position:78-250
               
               
               Cow position:chr23:22826246-22826421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 75

               
               
               Conread position:78-353
               
               
               Cow position:chr23:15286944-15287237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:80-248
               
               
               Cow position:chr23:5786039-5785866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 67

               
               
               Conread position:81-235
               
               
               Cow position:chr23:5237235-5237386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 30

               
               
               Conread position:81-235
               
               
               Cow position:chr23:23904142-23904294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 58

               
               
               Conread position:81-248
               
               
               Cow position:chr23:35239555-35239373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):36, 153

               
               
               Conread position:81-248
               
               
               Cow position:chr23:41348423-41348602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):6, 174

               
               
               Conread position:81-250
               
               
               Cow position:chr23:16961490-16961317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 166

               
               
               Conread position:81-350
               
               
               Cow position:chr23:18901862-18902152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:81-355
               
               
               Cow position:chr23:5732741-5732440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:82-231
               
               
               Cow position:chr23:15262766-15262616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:82-248
               
               
               Cow position:chr23:4003852-4003668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 179

               
               
               Conread position:82-249
               
               
               Cow position:chr23:7709985-7709811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:82-355
               
               
               Cow position:chr23:1743989-1743699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):42, 195

               
               
               Conread position:83-227
               
               
               Cow position:chr23:16447492-16447647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-229
               
               
               Cow position:chr23:22205398-22205551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 87

               
               
               Conread position:83-230
               
               
               Cow position:chr23:4291559-4291393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr23:13137737-13137897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr23:14895486-14895635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 59

               
               
               Conread position:83-230
               
               
               Cow position:chr23:23197528-23197382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:83-247
               
               
               Cow position:chr23:3979573-3979740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 128

               
               
               Conread position:83-248
               
               
               Cow position:chr23:5395281-5395456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr23:5514714-5514544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):34, 68

               
               
               Conread position:83-248
               
               
               Cow position:chr23:5686434-5686600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:83-248
               
               
               Cow position:chr23:11369422-11369248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:83-248
               
               
               Cow position:chr23:16877202-16877028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 169

               
               
               Conread position:83-248
               
               
               Cow position:chr23:17012540-17012717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 172

               
               
               Conread position:83-248
               
               
               Cow position:chr23:17597624-17597448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 173

               
               
               Conread position:83-248
               
               
               Cow position:chr23:18417278-18417114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:83-330
               
               
               Cow position:chr23:26319576-26319333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:83-351
               
               
               Cow position:chr23:2457633-2457360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 55

               
               
               Conread position:83-353
               
               
               Cow position:chr23:307660-307350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):39, 284

               
               
               Conread position:83-354
               
               
               Cow position:chr23:187381-187069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr23:2055862-2055597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):171, 63

               
               
               Conread position:83-354
               
               
               Cow position:chr23:6035611-6035333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):154, 32

               
               
               Conread position:83-354
               
               
               Cow position:chr23:38974037-38973738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:83-354
               
               
               Cow position:chr23:39753303-39753009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:83-355
               
               
               Cow position:chr23:1656096-1655785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr23:3890370-3890674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 245

               
               
               Conread position:83-355
               
               
               Cow position:chr23:6224170-6223879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 251

               
               
               Conread position:83-355
               
               
               Cow position:chr23:13520646-13520341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):32, 41

               
               
               Conread position:83-355
               
               
               Cow position:chr23:18322246-18322525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:83-355
               
               
               Cow position:chr23:29243134-29242841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:83-355
               
               
               Cow position:chr23:33152993-33153299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 149

               
               
               Conread position:83-355
               
               
               Cow position:chr23:34356843-34356534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):39, 136

               
               
               Conread position:85-248
               
               
               Cow position:chr23:40781513-40781350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:85-354
               
               
               Cow position:chr23:22530237-22530523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:86-355
               
               
               Cow position:chr23:5436801-5437107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 142

               
               
               Conread position:87-230
               
               
               Cow position:chr23:1981475-1981623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:87-230
               
               
               Cow position:chr23:25933346-25933196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-232
               
               
               Cow position:chr23:15056378-15056535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-253
               
               
               Cow position:chr23:26698284-26698455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 160

               
               
               Conread position:87-351
               
               
               Cow position:chr23:26949389-26949094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:92-355
               
               
               Cow position:chr23:23409906-23409630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:93-240
               
               
               Cow position:chr23:5386913-5387062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 6

               
               
               Conread position:94-235
               
               
               Cow position:chr23:13202180-13202324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:94-354
               
               
               Cow position:chr23:28944900-28945173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):138, 31

               
               
               Conread position:121-232
               
               
               Cow position:chr23:40328986-40329099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:130-329
               
               
               Cow position:chr23:16780423-16780633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:130-355
               
               
               Cow position:chr23:20194788-20195026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:137-247
               
               
               Cow position:chr23:13673900-13674009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:137-252
               
               
               Cow position:chr23:3835464-3835579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):104, 90

               
               
               Conread position:137-354
               
               
               Cow position:chr23:344057-344283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:137-355
               
               
               Cow position:chr23:1636399-1636169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr23:4327570-4327799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):107, 21

               
               
               Conread position:137-355
               
               
               Cow position:chr23:18697894-18698133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:140-354
               
               
               Cow position:chr23:25358841-25358627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:144-231
               
               
               Cow position:chr23:18739339-18739427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:77
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr23:38118082-38117995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-235
               
               
               Cow position:chr23:1480764-1480673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:79
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr23:4416163-4416259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:80
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr23:32621410-32621312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr23:1798235-1798132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr23:3244344-3244447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-251
               
               
               Cow position:chr23:30617354-30617462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-253
               
               
               Cow position:chr23:10595336-10595445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):97, 107

               
               
               Conread position:144-273
               
               
               Cow position:chr23:19269169-19269036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 83

               
               
               Conread position:144-283
               
               
               Cow position:chr23:7574500-7574651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-310
               
               
               Cow position:chr23:35503896-35503720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):98, 9

               
               
               Conread position:144-353
               
               
               Cow position:chr23:306647-306417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):89, 204

               
               
               Conread position:144-353
               
               
               Cow position:chr23:4104520-4104297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):88, 170

               
               
               Conread position:144-353
               
               
               Cow position:chr23:7596229-7596439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 88

               
               
               Conread position:144-353
               
               
               Cow position:chr23:19173239-19173460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 194

               
               
               Conread position:144-353
               
               
               Cow position:chr23:33711884-33711654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:144-355
               
               
               Cow position:chr23:38152-37928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr23:3244793-3245025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr23:18415931-18416156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):85, 45

               
               
               Conread position:145-354
               
               
               Cow position:chr23:33599182-33599404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:145-355
               
               
               Cow position:chr23:4972889-4972675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 77

               
               
               Conread position:146-355
               
               
               Cow position:chr23:1759369-1759159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 187

               
               
               Conread position:148-353
               
               
               Cow position:chr23:1701292-1701063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:149-247
               
               
               Cow position:chr23:29972508-29972408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:149-337
               
               
               Cow position:chr23:32040471-32040284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 88

               
               
               Conread position:149-352
               
               
               Cow position:chr23:13599460-13599238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:149-354
               
               
               Cow position:chr23:1397919-1398143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):84, 186

               
               
               Conread position:149-354
               
               
               Cow position:chr23:16699922-16700147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr23:5723654-5723435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:149-355
               
               
               Cow position:chr23:9734528-9734305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:150-240
               
               
               Cow position:chr23:14569382-14569472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:77
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:150-250
               
               
               Cow position:chr23:35254047-35254150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:150-326
               
               
               Cow position:chr23:38845718-38845525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:150-354
               
               
               Cow position:chr23:6592590-6592808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:150-355
               
               
               Cow position:chr23:33601420-33601637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:154-352
               
               
               Cow position:chr23:18402175-18402395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):82, 158

               
               
               Conread position:161-351
               
               
               Cow position:chr23:4795277-4795067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:161-355
               
               
               Cow position:chr23:36309528-36309311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:171-355
               
               
               Cow position:chr23:17796229-17796418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:176-351
               
               
               Cow position:chr23:30999657-30999473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:178-352
               
               
               Cow position:chr23:19370984-19371177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:228-354
               
               
               Cow position:chr23:3247604-3247476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:229-355
               
               
               Cow position:chr23:40484945-40485073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:230-353
               
               
               Cow position:chr23:1647642-1647511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 32

               
               
               Conread position:230-355
               
               
               Cow position:chr23:1068292-1068422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:232-350
               
               
               Cow position:chr23:8378909-8379032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr23:1921205-1921335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr23:9713344-9713210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:233-353
               
               
               Cow position:chr23:15710058-15710180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:240-353
               
               
               Cow position:chr23:35254231-35254345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:57-351
               
               
               Cow position:chr24:24532373-24532070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):12, 228

               
               
               Conread position:72-250
               
               
               Cow position:chr24:33372732-33372548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 112

               
               
               Conread position:74-210
               
               
               Cow position:chr24:2223037-2223180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:74-225
               
               
               Cow position:chr24:14729889-14729734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:74-248
               
               
               Cow position:chr24:390284-390097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:75-230
               
               
               Cow position:chr24:25947675-25947850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:75-352
               
               
               Cow position:chr24:2359000-2359309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 188

               
               
               Conread position:75-354
               
               
               Cow position:chr24:35074265-35073958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:76-227
               
               
               Cow position:chr24:18874638-18874806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 120

               
               
               Conread position:76-348
               
               
               Cow position:chr24:23694729-23695022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 269

               
               
               Conread position:77-355
               
               
               Cow position:chr24:16995059-16994752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):45, 274

               
               
               Conread position:78-250
               
               
               Cow position:chr24:15246478-15246650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):62, 45

               
               
               Conread position:78-353
               
               
               Cow position:chr24:16645149-16645457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:79-253
               
               
               Cow position:chr24:37252337-37252147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 180

               
               
               Conread position:79-354
               
               
               Cow position:chr24:28722058-28721756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 130

               
               
               Conread position:81-235
               
               
               Cow position:chr24:40811845-40811686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 152

               
               
               Conread position:82-248
               
               
               Cow position:chr24:27844357-27844533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:82-252
               
               
               Cow position:chr24:24490850-24491028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:82-253
               
               
               Cow position:chr24:175332-175502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:82-354
               
               
               Cow position:chr24:14550966-14550663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 233

               
               
               Conread position:83-217
               
               
               Cow position:chr24:27791569-27791710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:83-221
               
               
               Cow position:chr24:16303509-16303656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-225
               
               
               Cow position:chr24:27719355-27719510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-228
               
               
               Cow position:chr24:35335258-35335105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr24:26588393-26588231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-234
               
               
               Cow position:chr24:13114917-13114764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):24, 70

               
               
               Conread position:83-235
               
               
               Cow position:chr24:230455-230290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr24:16510146-16509984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:83-238
               
               
               Cow position:chr24:11035337-11035503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 125

               
               
               Conread position:83-238
               
               
               Cow position:chr24:31383283-31383120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):41, 148

               
               
               Conread position:83-240
               
               
               Cow position:chr24:36286743-36286571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr24:32979000-32979173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 168

               
               
               Conread position:83-249
               
               
               Cow position:chr24:36554526-36554706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-252
               
               
               Cow position:chr24:27203628-27203449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:83-253
               
               
               Cow position:chr24:20364241-20364420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:83-317
               
               
               Cow position:chr24:25970909-25971150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 141

               
               
               Conread position:83-345
               
               
               Cow position:chr24:39523275-39523573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-347
               
               
               Cow position:chr24:42103536-42103248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 260

               
               
               Conread position:83-351
               
               
               Cow position:chr24:25678175-25677905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:83-352
               
               
               Cow position:chr24:7777459-7777749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:83-352
               
               
               Cow position:chr24:17308966-17309249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):44, 155

               
               
               Conread position:83-353
               
               
               Cow position:chr24:25425191-25424929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:83-353
               
               
               Cow position:chr24:29389392-29389107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-354
               
               
               Cow position:chr24:11840359-11840051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:83-354
               
               
               Cow position:chr24:27874748-27874467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr24:34390447-34390162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):6, 248

               
               
               Conread position:83-354
               
               
               Cow position:chr24:42226439-42226165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 146

               
               
               Conread position:83-355
               
               
               Cow position:chr24:16267978-16268249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):160, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr24:19187107-19186826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 253

               
               
               Conread position:83-355
               
               
               Cow position:chr24:19801014-19800711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 269

               
               
               Conread position:83-355
               
               
               Cow position:chr24:27149557-27149260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 172

               
               
               Conread position:83-355
               
               
               Cow position:chr24:27810324-27810051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 158

               
               
               Conread position:83-355
               
               
               Cow position:chr24:27906613-27906303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):39, 110

               
               
               Conread position:83-355
               
               
               Cow position:chr24:32054819-32054524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr24:42825340-42825630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:85-230
               
               
               Cow position:chr24:13610474-13610320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:85-355
               
               
               Cow position:chr24:24755602-24755308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):145, 81

               
               
               Conread position:86-247
               
               
               Cow position:chr24:2730455-2730620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 159

               
               
               Conread position:87-235
               
               
               Cow position:chr24:27713239-27713398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-247
               
               
               Cow position:chr24:23000172-23000009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 154

               
               
               Conread position:87-248
               
               
               Cow position:chr24:5152697-5152516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-353
               
               
               Cow position:chr24:17955294-17955575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:87-354
               
               
               Cow position:chr24:19658705-19658421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 188

               
               
               Conread position:87-355
               
               
               Cow position:chr24:17832658-17832949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 28

               
               
               Conread position:87-355
               
               
               Cow position:chr24:28553401-28553683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):31, 261

               
               
               Conread position:87-355
               
               
               Cow position:chr24:30544719-30544995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:88-355
               
               
               Cow position:chr24:29539760-29540043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 155

               
               
               Conread position:89-354
               
               
               Cow position:chr24:43635583-43635303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):28, 246

               
               
               Conread position:94-237
               
               
               Cow position:chr24:22194578-22194425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:95-351
               
               
               Cow position:chr24:38841270-38841535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):28, 227

               
               
               Conread position:113-335
               
               
               Cow position:chr24:16895008-16895247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:133-240
               
               
               Cow position:chr24:32890935-32891042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-355
               
               
               Cow position:chr24:38006613-38006841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:137-231
               
               
               Cow position:chr24:10840815-10840909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr24:4635063-4635175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr24:22235572-22235462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-253
               
               
               Cow position:chr24:18313828-18313944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 106

               
               
               Conread position:137-353
               
               
               Cow position:chr24:18390196-18390422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:138-247
               
               
               Cow position:chr24:32818198-32818308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 95

               
               
               Conread position:140-353
               
               
               Cow position:chr24:35576438-35576668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:140-353
               
               
               Cow position:chr24:40850253-40850030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):85, 61

               
               
               Conread position:141-355
               
               
               Cow position:chr24:39440467-39440690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr24:21623320-21623233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:78
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr24:22420058-22419971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-238
               
               
               Cow position:chr24:28470582-28470676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr24:162101-161998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr24:41412199-41412302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-251
               
               
               Cow position:chr24:7113320-7113214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-280
               
               
               Cow position:chr24:18810929-18810791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-307
               
               
               Cow position:chr24:15263974-15263806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:144-352
               
               
               Cow position:chr24:35632077-35631854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:144-353
               
               
               Cow position:chr24:21519525-21519305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):59, 169

               
               
               Conread position:144-353
               
               
               Cow position:chr24:34008475-34008710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr24:39905349-39905584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 210

               
               
               Conread position:144-355
               
               
               Cow position:chr24:7917284-7917498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 60

               
               
               Conread position:144-355
               
               
               Cow position:chr24:17294100-17294327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):89, 80

               
               
               Conread position:144-355
               
               
               Cow position:chr24:31159713-31159481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr24:38347771-38347549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):89, 54

               
               
               Conread position:144-355
               
               
               Cow position:chr24:44987277-44987514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr24:26880849-26880631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):96, 82

               
               
               Conread position:146-355
               
               
               Cow position:chr24:10300172-10299951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):87, 193

               
               
               Conread position:146-355
               
               
               Cow position:chr24:37246147-37246347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 65

               
               
               Conread position:149-248
               
               
               Cow position:chr24:256119-256021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr24:6102920-6102693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):81, 185

               
               
               Conread position:150-248
               
               
               Cow position:chr24:39218460-39218557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:150-345
               
               
               Cow position:chr24:35150610-35150396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr24:18970416-18970643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr24:32071053-32070830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):83, 157

               
               
               Conread position:151-353
               
               
               Cow position:chr24:32204704-32204928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:153-355
               
               
               Cow position:chr24:27267703-27267498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:155-355
               
               
               Cow position:chr24:29171048-29170834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):59, 190

               
               
               Conread position:159-353
               
               
               Cow position:chr24:399019-399209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:160-339
               
               
               Cow position:chr24:12851787-12851596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:168-352
               
               
               Cow position:chr24:591965-591781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:171-355
               
               
               Cow position:chr24:34578906-34579097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:228-351
               
               
               Cow position:chr24:16509968-16509839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:231-355
               
               
               Cow position:chr24:15707446-15707576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr24:16625491-16625622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr24:30483953-30484086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr24:36554838-36554971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 102

               
               
               Conread position:232-355
               
               
               Cow position:chr24:42007735-42007604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:238-355
               
               
               Cow position:chr24:43432780-43432657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr24:27719773-27719891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:241-355
               
               
               Cow position:chr24:885702-885823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:271-354
               
               
               Cow position:chr24:31382845-31382762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:272-355
               
               
               Cow position:chr24:28143153-28143236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:70-231
               
               
               Cow position:chr25:447694-447870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:71-235
               
               
               Cow position:chr25:18928997-18929163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:71-251
               
               
               Cow position:chr25:36156021-36155832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:71-355
               
               
               Cow position:chr25:22242156-22241867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:71-355
               
               
               Cow position:chr25:30319238-30319557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:73-230
               
               
               Cow position:chr25:27916210-27916046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:74-240
               
               
               Cow position:chr25:31514390-31514205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:75-230
               
               
               Cow position:chr25:14210181-14210017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:75-248
               
               
               Cow position:chr25:34768543-34768715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:76-219
               
               
               Cow position:chr25:18866014-18865865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 50

               
               
               Conread position:76-235
               
               
               Cow position:chr25:12509817-12509982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:76-253
               
               
               Cow position:chr25:15273868-15273685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 175

               
               
               Conread position:76-256
               
               
               Cow position:chr25:9023948-9023758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:77-235
               
               
               Cow position:chr25:22179113-22178946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):50, 157

               
               
               Conread position:77-263
               
               
               Cow position:chr25:26065615-26065425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:77-325
               
               
               Cow position:chr25:1763288-1763006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:77-355
               
               
               Cow position:chr25:24651254-24651564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:78-247
               
               
               Cow position:chr25:14164400-14164213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 178

               
               
               Conread position:78-248
               
               
               Cow position:chr25:23998737-23998907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):44, 75

               
               
               Conread position:78-253
               
               
               Cow position:chr25:14720934-14720754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:81-231
               
               
               Cow position:chr25:12223763-12223604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-231
               
               
               Cow position:chr25:33100771-33100608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr25:432849-433031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):37, 177

               
               
               Conread position:81-250
               
               
               Cow position:chr25:13325765-13325595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:82-231
               
               
               Cow position:chr25:36370021-36369852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):7, 140

               
               
               Conread position:82-231
               
               
               Cow position:chr25:36375712-36375543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):7, 140

               
               
               Conread position:82-253
               
               
               Cow position:chr25:18810529-18810355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:82-355
               
               
               Cow position:chr25:21893532-21893222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-229
               
               
               Cow position:chr25:2362022-2361869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-232
               
               
               Cow position:chr25:18720930-18721088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-244
               
               
               Cow position:chr25:5922517-5922686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 163

               
               
               Conread position:83-245
               
               
               Cow position:chr25:35109081-35109250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr25:11957001-11956821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 175

               
               
               Conread position:83-251
               
               
               Cow position:chr25:1982788-1982971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 181

               
               
               Conread position:83-251
               
               
               Cow position:chr25:32063135-32063303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 60

               
               
               Conread position:83-252
               
               
               Cow position:chr25:18760514-18760697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:83-254
               
               
               Cow position:chr25:31926187-31926366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):34, 168

               
               
               Conread position:83-280
               
               
               Cow position:chr25:23519840-23520060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-346
               
               
               Cow position:chr25:10643119-10643410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 258

               
               
               Conread position:83-347
               
               
               Cow position:chr25:26224839-26225131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-348
               
               
               Cow position:chr25:11780461-11780187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):39, 237

               
               
               Conread position:83-349
               
               
               Cow position:chr25:24066491-24066765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):149, 56

               
               
               Conread position:83-351
               
               
               Cow position:chr25:17725232-17724949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):39, 120

               
               
               Conread position:83-351
               
               
               Cow position:chr25:24669255-24669546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 129

               
               
               Conread position:83-354
               
               
               Cow position:chr25:13295060-13294791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 122

               
               
               Conread position:83-354
               
               
               Cow position:chr25:18491234-18490962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):34, 207

               
               
               Conread position:83-355
               
               
               Cow position:chr25:2111233-2110963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:83-355
               
               
               Cow position:chr25:7217014-7216717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):39, 232

               
               
               Conread position:83-355
               
               
               Cow position:chr25:7306487-7306188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:83-355
               
               
               Cow position:chr25:26655089-26654796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:83-355
               
               
               Cow position:chr25:26701217-26700923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:84-231
               
               
               Cow position:chr25:15553095-15552943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:84-248
               
               
               Cow position:chr25:31732137-31732306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:84-355
               
               
               Cow position:chr25:20069909-20069610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):41, 242

               
               
               Conread position:85-246
               
               
               Cow position:chr25:26089632-26089796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:85-354
               
               
               Cow position:chr25:17704935-17704641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):7, 253

               
               
               Conread position:86-231
               
               
               Cow position:chr25:8410839-8411001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:86-231
               
               
               Cow position:chr25:10791625-10791781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:87-224
               
               
               Cow position:chr25:23769704-23769847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:87-240
               
               
               Cow position:chr25:35802470-35802639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:87-240
               
               
               Cow position:chr25:36840575-36840421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 122

               
               
               Conread position:87-252
               
               
               Cow position:chr25:11760267-11760439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 154

               
               
               Conread position:87-351
               
               
               Cow position:chr25:17701818-17702081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 50

               
               
               Conread position:87-353
               
               
               Cow position:chr25:14513299-14512999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:87-353
               
               
               Cow position:chr25:16400116-16400370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):37, 54

               
               
               Conread position:87-354
               
               
               Cow position:chr25:9269533-9269243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 236

               
               
               Conread position:87-354
               
               
               Cow position:chr25:26087711-26087408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr25:36082061-36081763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:89-247
               
               
               Cow position:chr25:26072372-26072543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 162

               
               
               Conread position:94-248
               
               
               Cow position:chr25:18646766-18646602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 159

               
               
               Conread position:95-229
               
               
               Cow position:chr25:18877419-18877560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:98-248
               
               
               Cow position:chr25:11661648-11661803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:98-349
               
               
               Cow position:chr25:17474346-17474619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):27, 23

               
               
               Conread position:113-235
               
               
               Cow position:chr25:23016173-23016049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:126-251
               
               
               Cow position:chr25:3983423-3983300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):8, 85

               
               
               Conread position:126-355
               
               
               Cow position:chr25:32277465-32277712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr25:6473960-6474070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-350
               
               
               Cow position:chr25:26059617-26059396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:137-355
               
               
               Cow position:chr25:6424493-6424697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):141, 35

               
               
               Conread position:137-355
               
               
               Cow position:chr25:27801395-27801173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:137-355
               
               
               Cow position:chr25:36017660-36017424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):93, 180

               
               
               Conread position:141-355
               
               
               Cow position:chr25:22203577-22203798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 20

               
               
               Conread position:143-248
               
               
               Cow position:chr25:7403220-7403324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:143-352
               
               
               Cow position:chr25:18564607-18564379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr25:11855430-11855516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr25:27520638-27520725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:79
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr25:33311206-33311302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:80
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-249
               
               
               Cow position:chr25:7311276-7311381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-250
               
               
               Cow position:chr25:15218252-15218145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-351
               
               
               Cow position:chr25:31230128-31230345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:144-353
               
               
               Cow position:chr25:1823977-1824207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):89, 191

               
               
               Conread position:144-353
               
               
               Cow position:chr25:20008253-20008023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 177

               
               
               Conread position:144-354
               
               
               Cow position:chr25:16921676-16921903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 177

               
               
               Conread position:144-355
               
               
               Cow position:chr25:12097954-12097728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):8, 79

               
               
               Conread position:144-355
               
               
               Cow position:chr25:18906005-18905772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr25:20059930-20060140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 140

               
               
               Conread position:146-341
               
               
               Cow position:chr25:30450150-30449942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:147-355
               
               
               Cow position:chr25:18894609-18894833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:148-355
               
               
               Cow position:chr25:38982209-38981989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:149-272
               
               
               Cow position:chr25:33776170-33776042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr25:11585633-11585405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr25:30619178-30618952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr25:788371-788151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 19

               
               
               Conread position:149-355
               
               
               Cow position:chr25:10504226-10504451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):84, 179

               
               
               Conread position:149-355
               
               
               Cow position:chr25:13569061-13569284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:149-355
               
               
               Cow position:chr25:20133200-20133426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:150-355
               
               
               Cow position:chr25:7581313-7581538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:151-353
               
               
               Cow position:chr25:24202899-24203105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):82, 114

               
               
               Conread position:151-355
               
               
               Cow position:chr25:20461215-20461013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:156-351
               
               
               Cow position:chr25:35345118-35344921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):117, 76

               
               
               Conread position:160-354
               
               
               Cow position:chr25:24504413-24504610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:174-348
               
               
               Cow position:chr25:31055051-31055226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:175-355
               
               
               Cow position:chr25:24008108-24008288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:181-352
               
               
               Cow position:chr25:12817448-12817266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 177

               
               
               Conread position:222-355
               
               
               Cow position:chr25:36779530-36779383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:225-353
               
               
               Cow position:chr25:1735296-1735425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:229-355
               
               
               Cow position:chr25:12081300-12081434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:230-353
               
               
               Cow position:chr25:9754077-9754200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 71

               
               
               Conread position:232-351
               
               
               Cow position:chr25:1838254-1838128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:232-355
               
               
               Cow position:chr25:15440769-15440892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:234-353
               
               
               Cow position:chr25:11168749-11168630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:240-355
               
               
               Cow position:chr25:23323209-23323091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:241-355
               
               
               Cow position:chr25:3983048-3982930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 92

               
               
               Conread position:244-353
               
               
               Cow position:chr25:31732331-31732447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:244-353
               
               
               Cow position:chr25:31732729-31732845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:277-353
               
               
               Cow position:chr25:4002765-4002689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:77
               
               
               Alignm identity:71
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-248
               
               
               Cow position:chr26:25407615-25407428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 140

               
               
               Conread position:72-353
               
               
               Cow position:chr26:4421295-4421592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 136

               
               
               Conread position:73-240
               
               
               Cow position:chr26:21822821-21823002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:73-355
               
               
               Cow position:chr26:31633957-31633634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:75-230
               
               
               Cow position:chr26:11884510-11884353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:75-253
               
               
               Cow position:chr26:20291469-20291661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 182

               
               
               Conread position:75-355
               
               
               Cow position:chr26:16550212-16549890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:75-355
               
               
               Cow position:chr26:25737670-25737379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):14, 127

               
               
               Conread position:76-248
               
               
               Cow position:chr26:5666263-5666084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 174

               
               
               Conread position:76-352
               
               
               Cow position:chr26:2986868-2987167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:76-355
               
               
               Cow position:chr26:21243310-21243007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:77-232
               
               
               Cow position:chr26:9535735-9535569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 137

               
               
               Conread position:82-352
               
               
               Cow position:chr26:830433-830713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):35, 211

               
               
               Conread position:83-227
               
               
               Cow position:chr26:28618-28775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr26:5407195-5407032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr26:7224138-7224290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:83-231
               
               
               Cow position:chr26:8478663-8478820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr26:21636836-21636989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:83-238
               
               
               Cow position:chr26:1894166-1894331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:83-240
               
               
               Cow position:chr26:31382530-31382363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-245
               
               
               Cow position:chr26:26048306-26048465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:83-248
               
               
               Cow position:chr26:9099318-9099496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 173

               
               
               Conread position:83-249
               
               
               Cow position:chr26:34314894-34314726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:83-253
               
               
               Cow position:chr26:3192232-3192414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:83-253
               
               
               Cow position:chr26:12807090-12807269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):33, 100

               
               
               Conread position:83-353
               
               
               Cow position:chr26:35449271-35448967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr26:6714083-6714388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr26:12154930-12155212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr26:23096977-23097272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):40, 266

               
               
               Conread position:84-229
               
               
               Cow position:chr26:32517253-32517403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:85-247
               
               
               Cow position:chr26:28446782-28446618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:86-253
               
               
               Cow position:chr26:8341696-8341527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:86-336
               
               
               Cow position:chr26:1325954-1325693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:87-230
               
               
               Cow position:chr26:13018191-13018336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:87-235
               
               
               Cow position:chr26:23106220-23106380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:87-247
               
               
               Cow position:chr26:16796001-16796173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:87-252
               
               
               Cow position:chr26:16585639-16585465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-344
               
               
               Cow position:chr26:12893218-12893509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:87-352
               
               
               Cow position:chr26:14905605-14905903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-353
               
               
               Cow position:chr26:6470082-6470365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:87-355
               
               
               Cow position:chr26:3071770-3072060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:87-355
               
               
               Cow position:chr26:22249278-22249573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:89-231
               
               
               Cow position:chr26:26504939-26504787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:89-355
               
               
               Cow position:chr26:2994490-2994785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:89-355
               
               
               Cow position:chr26:13828264-13827978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:93-352
               
               
               Cow position:chr26:29889309-29889589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 208

               
               
               Conread position:100-231
               
               
               Cow position:chr26:18381504-18381365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:123-248
               
               
               Cow position:chr26:19774141-19774263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:137-252
               
               
               Cow position:chr26:24240825-24240712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:137-345
               
               
               Cow position:chr26:32120772-32120556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):89, 170

               
               
               Conread position:137-352
               
               
               Cow position:chr26:30254488-30254719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):91, 179

               
               
               Conread position:137-355
               
               
               Cow position:chr26:11263785-11263547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:140-344
               
               
               Cow position:chr26:3706933-3706711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 7

               
               
               Conread position:144-231
               
               
               Cow position:chr26:16166556-16166643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:77
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr26:28202620-28202707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:77
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-238
               
               
               Cow position:chr26:9501847-9501753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr26:27482427-27482523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:84
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr26:32776373-32776600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):93, 62

               
               
               Conread position:144-353
               
               
               Cow position:chr26:32834440-32834666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 173

               
               
               Conread position:144-354
               
               
               Cow position:chr26:8811266-8811036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr26:4513434-4513657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 190

               
               
               Conread position:144-355
               
               
               Cow position:chr26:4807693-4807467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr26:22348873-22349101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 192

               
               
               Conread position:144-355
               
               
               Cow position:chr26:22354553-22354319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:145-240
               
               
               Cow position:chr26:829943-829848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-247
               
               
               Cow position:chr26:26245033-26245134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr26:31701950-31701727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:148-240
               
               
               Cow position:chr26:7183862-7183954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:78
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-248
               
               
               Cow position:chr26:24453776-24453873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:150-354
               
               
               Cow position:chr26:27594748-27594538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 128

               
               
               Conread position:151-248
               
               
               Cow position:chr26:6865156-6865060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:151-253
               
               
               Cow position:chr26:25074849-25074748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:151-352
               
               
               Cow position:chr26:31462042-31462248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 135

               
               
               Conread position:151-353
               
               
               Cow position:chr26:32836371-32836148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:153-351
               
               
               Cow position:chr26:8643071-8642854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:158-355
               
               
               Cow position:chr26:15200391-15200608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:163-355
               
               
               Cow position:chr26:30568543-30568752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:211-353
               
               
               Cow position:chr26:18692481-18692331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:230-350
               
               
               Cow position:chr26:12807489-12807605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 31

               
               
               Conread position:232-353
               
               
               Cow position:chr26:31779518-31779390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):22, 111

               
               
               Conread position:232-355
               
               
               Cow position:chr26:21992138-21992008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:235-351
               
               
               Cow position:chr26:6724138-6724021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):19, 86

               
               
               Conread position:240-353
               
               
               Cow position:chr26:14957991-14958106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:272-354
               
               
               Cow position:chr26:19459673-19459592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:77
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:277-355
               
               
               Cow position:chr26:10767928-10768006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:72
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-352
               
               
               Cow position:chr27:12596527-12596830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:72-230
               
               
               Cow position:chr27:11145628-11145799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 109

               
               
               Conread position:74-231
               
               
               Cow position:chr27:9977434-9977604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:74-248
               
               
               Cow position:chr27:28932054-28931865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 176

               
               
               Conread position:74-325
               
               
               Cow position:chr27:16704998-16705290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:74-355
               
               
               Cow position:chr27:22386635-22386938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):9, 83

               
               
               Conread position:75-253
               
               
               Cow position:chr27:19741642-19741466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:75-262
               
               
               Cow position:chr27:16505156-16504957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:75-347
               
               
               Cow position:chr27:7615321-7615029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:75-355
               
               
               Cow position:chr27:12515942-12516259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 260

               
               
               Conread position:76-231
               
               
               Cow position:chr27:26983913-26984083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:76-320
               
               
               Cow position:chr27:1637176-1636902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:76-355
               
               
               Cow position:chr27:20354348-20354652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):14, 143

               
               
               Conread position:77-235
               
               
               Cow position:chr27:2949565-2949402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:77-355
               
               
               Cow position:chr27:20045647-20045952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:78-230
               
               
               Cow position:chr27:1674543-1674383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 119

               
               
               Conread position:78-231
               
               
               Cow position:chr27:21419432-21419269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:78-235
               
               
               Cow position:chr27:30444922-30444755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:78-318
               
               
               Cow position:chr27:13255042-13254772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 248

               
               
               Conread position:78-355
               
               
               Cow position:chr27:28002052-28001742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):9, 114

               
               
               Conread position:80-355
               
               
               Cow position:chr27:13251781-13252074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 238

               
               
               Conread position:81-223
               
               
               Cow position:chr27:23760223-23760068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-250
               
               
               Cow position:chr27:15867146-15867332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:81-253
               
               
               Cow position:chr27:16246562-16246742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:81-355
               
               
               Cow position:chr27:6541388-6541697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:82-235
               
               
               Cow position:chr27:4944750-4944589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-252
               
               
               Cow position:chr27:25382381-25382209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:82-354
               
               
               Cow position:chr27:22171058-22171367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-218
               
               
               Cow position:chr27:20561345-20561490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr27:11982891-11982726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 143

               
               
               Conread position:83-230
               
               
               Cow position:chr27:18873810-18873968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr27:22245399-22245546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:83-231
               
               
               Cow position:chr27:26400960-26400800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr27:13940793-13940627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:83-247
               
               
               Cow position:chr27:4411934-4411771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:83-247
               
               
               Cow position:chr27:20749245-20749074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:83-247
               
               
               Cow position:chr27:23929735-23929903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 125

               
               
               Conread position:83-248
               
               
               Cow position:chr27:20048394-20048571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 172

               
               
               Conread position:83-248
               
               
               Cow position:chr27:20812681-20812842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:83-351
               
               
               Cow position:chr27:26441272-26440996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 68

               
               
               Conread position:83-352
               
               
               Cow position:chr27:15315280-15315570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 218

               
               
               Conread position:83-354
               
               
               Cow position:chr27:27020338-27020036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr27:22225812-22225527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:83-355
               
               
               Cow position:chr27:23632366-23632663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr27:25809759-25809454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 248

               
               
               Conread position:83-355
               
               
               Cow position:chr27:26087077-26087362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 208

               
               
               Conread position:83-355
               
               
               Cow position:chr27:26481440-26481144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 144

               
               
               Conread position:84-248
               
               
               Cow position:chr27:4414057-4413881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:84-248
               
               
               Cow position:chr27:18791756-18791572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 179

               
               
               Conread position:84-355
               
               
               Cow position:chr27:26112160-26111841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:85-248
               
               
               Cow position:chr27:6162644-6162473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):37, 166

               
               
               Conread position:86-240
               
               
               Cow position:chr27:22792599-22792762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:87-230
               
               
               Cow position:chr27:26643464-26643608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 122

               
               
               Conread position:87-240
               
               
               Cow position:chr27:5539931-5539765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:87-243
               
               
               Cow position:chr27:23495934-23495776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 141

               
               
               Conread position:87-250
               
               
               Cow position:chr27:17102661-17102835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:87-270
               
               
               Cow position:chr27:31248845-31248643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-342
               
               
               Cow position:chr27:67998-68258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:87-352
               
               
               Cow position:chr27:2957178-2957466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:87-353
               
               
               Cow position:chr27:28190430-28190151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:87-354
               
               
               Cow position:chr27:14343674-14343399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:87-355
               
               
               Cow position:chr27:3306547-3306840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:88-336
               
               
               Cow position:chr27:15865372-15865660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:89-231
               
               
               Cow position:chr27:27648552-27648396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:92-231
               
               
               Cow position:chr27:26909822-26909670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:92-242
               
               
               Cow position:chr27:31031233-31031387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:94-253
               
               
               Cow position:chr27:21393725-21393565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:100-247
               
               
               Cow position:chr27:22268019-22268165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:110-231
               
               
               Cow position:chr27:15332499-15332374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:122-354
               
               
               Cow position:chr27:30177741-30177507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:137-230
               
               
               Cow position:chr27:19452829-19452922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:137-248
               
               
               Cow position:chr27:1789311-1789201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr27:17918890-17918780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr27:30489583-30489471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:137-329
               
               
               Cow position:chr27:17918486-17918273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr27:6550291-6550525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr27:15643002-15643239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):97, 71

               
               
               Conread position:137-355
               
               
               Cow position:chr27:22723867-22723637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr27:30988625-30988864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 91

               
               
               Conread position:141-227
               
               
               Cow position:chr27:19779708-19779794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:79
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:141-354
               
               
               Cow position:chr27:16965408-16965640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):72, 172

               
               
               Conread position:143-344
               
               
               Cow position:chr27:29693311-29693524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):88, 141

               
               
               Conread position:144-231
               
               
               Cow position:chr27:19755932-19756019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:75
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr27:26118334-26118421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:78
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr27:24303781-24303877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-242
               
               
               Cow position:chr27:26317900-26317999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr27:13801646-13801749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr27:29388505-29388608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:144-248
               
               
               Cow position:chr27:5553304-5553408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr27:27673181-27673077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-251
               
               
               Cow position:chr27:23060279-23060169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-273
               
               
               Cow position:chr27:23895259-23895399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:144-321
               
               
               Cow position:chr27:28290699-28290881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):86, 139

               
               
               Conread position:144-324
               
               
               Cow position:chr27:25151928-25152120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:144-348
               
               
               Cow position:chr27:28922058-28921836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):88, 79

               
               
               Conread position:144-349
               
               
               Cow position:chr27:1558812-1558596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):112, 14

               
               
               Conread position:144-349
               
               
               Cow position:chr27:28896715-28896940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 219

               
               
               Conread position:144-353
               
               
               Cow position:chr27:23554492-23554264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):92, 67

               
               
               Conread position:144-353
               
               
               Cow position:chr27:30261058-30260827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 205

               
               
               Conread position:144-354
               
               
               Cow position:chr27:6924919-6925156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr27:17472647-17472877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr27:2592376-2592616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr27:2930754-2930531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr27:22454942-22454710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr27:23128302-23128524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:145-231
               
               
               Cow position:chr27:232389-232475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-353
               
               
               Cow position:chr27:27003423-27003208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):83, 139

               
               
               Conread position:145-354
               
               
               Cow position:chr27:22603021-22603237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 177

               
               
               Conread position:145-355
               
               
               Cow position:chr27:20336937-20337180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr27:30914845-30915075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:146-332
               
               
               Cow position:chr27:26852743-26852547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:146-355
               
               
               Cow position:chr27:26188666-26188889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):87, 132

               
               
               Conread position:146-355
               
               
               Cow position:chr27:26413418-26413185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:146-355
               
               
               Cow position:chr27:29380691-29380924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:147-355
               
               
               Cow position:chr27:15925182-15925409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:148-247
               
               
               Cow position:chr27:24709395-24709495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:148-248
               
               
               Cow position:chr27:23545492-23545392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:148-348
               
               
               Cow position:chr27:22179928-22179733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 84

               
               
               Conread position:149-353
               
               
               Cow position:chr27:31017986-31017768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 178

               
               
               Conread position:150-236
               
               
               Cow position:chr27:23489020-23488934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:79
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:150-272
               
               
               Cow position:chr27:25372522-25372398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:150-353
               
               
               Cow position:chr27:7974017-7974240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:150-355
               
               
               Cow position:chr27:23882527-23882310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):65, 156

               
               
               Conread position:153-316
               
               
               Cow position:chr27:29149429-29149256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:153-355
               
               
               Cow position:chr27:674187-673977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):84, 143

               
               
               Conread position:154-352
               
               
               Cow position:chr27:7935313-7935093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:154-353
               
               
               Cow position:chr27:26134996-26135205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 26

               
               
               Conread position:158-352
               
               
               Cow position:chr27:23735816-23736025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:161-353
               
               
               Cow position:chr27:30354493-30354277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:162-354
               
               
               Cow position:chr27:18593125-18593334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 181

               
               
               Conread position:174-353
               
               
               Cow position:chr27:9169775-9169579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:182-353
               
               
               Cow position:chr27:30672686-30672498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:202-351
               
               
               Cow position:chr27:9090898-9090739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:202-352
               
               
               Cow position:chr27:30362146-30362308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:223-349
               
               
               Cow position:chr27:21975981-21976111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:226-352
               
               
               Cow position:chr27:20056036-20055905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr27:12429344-12429468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:232-343
               
               
               Cow position:chr27:6522981-6523094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-351
               
               
               Cow position:chr27:27550797-27550678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:232-353
               
               
               Cow position:chr27:21569903-21569777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-354
               
               
               Cow position:chr27:20570056-20570187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr27:14902716-14902584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr27:20085502-20085632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr27:4011624-4011745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:49-307
               
               
               Cow position:chr28:20397145-20397429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:70-351
               
               
               Cow position:chr28:7267742-7268038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:71-221
               
               
               Cow position:chr28:24238268-24238427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:71-221
               
               
               Cow position:chr28:32372453-32372295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 145

               
               
               Conread position:71-227
               
               
               Cow position:chr28:10890526-10890691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:71-253
               
               
               Cow position:chr28:3746413-3746221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 182

               
               
               Conread position:73-227
               
               
               Cow position:chr28:4866364-4866529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:73-248
               
               
               Cow position:chr28:4186117-4185930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):49, 182

               
               
               Conread position:74-232
               
               
               Cow position:chr28:10763101-10762933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:75-219
               
               
               Cow position:chr28:21263366-21263209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:75-235
               
               
               Cow position:chr28:7618948-7619114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:75-248
               
               
               Cow position:chr28:5205463-5205293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:75-248
               
               
               Cow position:chr28:10196657-10196841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:75-248
               
               
               Cow position:chr28:12933524-12933706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):43, 179

               
               
               Conread position:75-253
               
               
               Cow position:chr28:17948905-17949094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 179

               
               
               Conread position:75-270
               
               
               Cow position:chr28:11305424-11305631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:75-352
               
               
               Cow position:chr28:11346277-11346587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):46, 232

               
               
               Conread position:76-229
               
               
               Cow position:chr28:2819976-2819817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:76-235
               
               
               Cow position:chr28:2131731-2131888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):109, 40

               
               
               Conread position:76-235
               
               
               Cow position:chr28:30902332-30902162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:76-248
               
               
               Cow position:chr28:11814867-11815054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 182

               
               
               Conread position:76-248
               
               
               Cow position:chr28:22085333-22085518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 180

               
               
               Conread position:76-351
               
               
               Cow position:chr28:21502593-21502293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:76-354
               
               
               Cow position:chr28:25728393-25728094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:77-219
               
               
               Cow position:chr28:13941530-13941678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):47, 145

               
               
               Conread position:77-248
               
               
               Cow position:chr28:6975444-6975263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:77-253
               
               
               Cow position:chr28:29850612-29850796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 174

               
               
               Conread position:77-282
               
               
               Cow position:chr28:24646793-24646574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:78-230
               
               
               Cow position:chr28:16767400-16767555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:78-240
               
               
               Cow position:chr28:20281957-20281789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:80-355
               
               
               Cow position:chr28:33163269-33163570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:81-217
               
               
               Cow position:chr28:12448425-12448283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 104

               
               
               Conread position:81-230
               
               
               Cow position:chr28:21008465-21008624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:81-238
               
               
               Cow position:chr28:9677869-9677702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:81-240
               
               
               Cow position:chr28:10053126-10053294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr28:10615744-10615922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):37, 173

               
               
               Conread position:81-248
               
               
               Cow position:chr28:11585003-11585180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr28:33322658-33322481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:81-349
               
               
               Cow position:chr28:8396531-8396262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:81-355
               
               
               Cow position:chr28:10606432-10606734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:82-227
               
               
               Cow position:chr28:8617021-8616876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:82-229
               
               
               Cow position:chr28:3492582-3492742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:82-232
               
               
               Cow position:chr28:10588828-10588982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:82-235
               
               
               Cow position:chr28:11816479-11816630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:82-247
               
               
               Cow position:chr28:3726003-3726184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):39, 177

               
               
               Conread position:82-250
               
               
               Cow position:chr28:26784051-26784219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:82-252
               
               
               Cow position:chr28:9740663-9740484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:82-354
               
               
               Cow position:chr28:5204390-5204087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:83-229
               
               
               Cow position:chr28:30937479-30937627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):56, 105

               
               
               Conread position:83-230
               
               
               Cow position:chr28:11411335-11411493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr28:16252204-16252364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:83-230
               
               
               Cow position:chr28:21744916-21744756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr28:117554-117723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr28:118818-118649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr28:16200536-16200703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr28:17680829-17680662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr28:20046746-20046593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):39, 140

               
               
               Conread position:83-235
               
               
               Cow position:chr28:3678563-3678398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr28:4071162-4071005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:83-235
               
               
               Cow position:chr28:21207173-21207332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-238
               
               
               Cow position:chr28:11019603-11019759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr28:32014989-32014815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-245
               
               
               Cow position:chr28:22813452-22813283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:83-247
               
               
               Cow position:chr28:8681233-8681405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):39, 163

               
               
               Conread position:83-248
               
               
               Cow position:chr28:5609714-5609895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr28:5630303-5630122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 131

               
               
               Conread position:83-248
               
               
               Cow position:chr28:6563690-6563876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 170

               
               
               Conread position:83-248
               
               
               Cow position:chr28:10959003-10958826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):34, 172

               
               
               Conread position:83-248
               
               
               Cow position:chr28:15362782-15362603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):39, 174

               
               
               Conread position:83-248
               
               
               Cow position:chr28:19395067-19394895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:83-250
               
               
               Cow position:chr28:4163376-4163563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-273
               
               
               Cow position:chr28:7964474-7964686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-286
               
               
               Cow position:chr28:13241385-13241587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):146, 39

               
               
               Conread position:83-352
               
               
               Cow position:chr28:23447630-23447927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:83-352
               
               
               Cow position:chr28:26719534-26719247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:83-353
               
               
               Cow position:chr28:4881045-4881341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:83-353
               
               
               Cow position:chr28:7008777-7009081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr28:9426148-9426454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 292

               
               
               Conread position:83-353
               
               
               Cow position:chr28:10495096-10495385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:83-353
               
               
               Cow position:chr28:22571480-22571769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:83-353
               
               
               Cow position:chr28:30746534-30746832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):39, 245

               
               
               Conread position:83-354
               
               
               Cow position:chr28:5827135-5826845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:83-355
               
               
               Cow position:chr28:5818042-5817737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr28:10845306-10845013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 238

               
               
               Conread position:83-355
               
               
               Cow position:chr28:11866464-11866771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 247

               
               
               Conread position:83-355
               
               
               Cow position:chr28:24996414-24996694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:83-355
               
               
               Cow position:chr28:25763204-25762924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):134, 44

               
               
               Conread position:84-230
               
               
               Cow position:chr28:2279399-2279555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:84-238
               
               
               Cow position:chr28:23047797-23047651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:85-346
               
               
               Cow position:chr28:25249537-25249256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):148, 45

               
               
               Conread position:85-352
               
               
               Cow position:chr28:3078494-3078784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:85-353
               
               
               Cow position:chr28:616571-616279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 67

               
               
               Conread position:86-355
               
               
               Cow position:chr28:9100129-9099830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:86-355
               
               
               Cow position:chr28:12951617-12951323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:87-250
               
               
               Cow position:chr28:8304442-8304270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):33, 158

               
               
               Conread position:87-253
               
               
               Cow position:chr28:19217012-19216841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:87-343
               
               
               Cow position:chr28:10298039-10297765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:87-354
               
               
               Cow position:chr28:23410134-23410430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr28:5188229-5188510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):9, 171

               
               
               Conread position:87-355
               
               
               Cow position:chr28:13474499-13474194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr28:22133108-22132819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):28, 150

               
               
               Conread position:89-272
               
               
               Cow position:chr28:3143687-3143892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:92-240
               
               
               Cow position:chr28:5867899-5867752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:92-344
               
               
               Cow position:chr28:24343548-24343275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:93-230
               
               
               Cow position:chr28:24726259-24726396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:95-247
               
               
               Cow position:chr28:3914897-3914738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:95-355
               
               
               Cow position:chr28:11451313-11451569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:99-231
               
               
               Cow position:chr28:7885209-7885070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:103-355
               
               
               Cow position:chr28:16386342-16386614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:107-333
               
               
               Cow position:chr28:24707060-24706819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:121-355
               
               
               Cow position:chr28:16085476-16085218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:123-238
               
               
               Cow position:chr28:24674618-24674502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:124-247
               
               
               Cow position:chr28:19024579-19024458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:125-248
               
               
               Cow position:chr28:659150-659273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:136-355
               
               
               Cow position:chr28:27161194-27161434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:137-231
               
               
               Cow position:chr28:2077634-2077540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr28:2743216-2743105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:137-354
               
               
               Cow position:chr28:18369882-18370113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):82, 119

               
               
               Conread position:137-355
               
               
               Cow position:chr28:2752360-2752600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):100, 232

               
               
               Conread position:137-355
               
               
               Cow position:chr28:7684570-7684784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):102, 95

               
               
               Conread position:137-355
               
               
               Cow position:chr28:25806697-25806466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:142-247
               
               
               Cow position:chr28:32179824-32179718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 97

               
               
               Conread position:144-230
               
               
               Cow position:chr28:4022800-4022714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:76
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr28:6301208-6301121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr28:17601427-17601514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:77
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr28:21355358-21355271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:79
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr28:13048157-13048253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr28:29041927-29042029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr28:7644868-7644764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:144-248
               
               
               Cow position:chr28:26826346-26826243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-250
               
               
               Cow position:chr28:11562119-11562225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 66

               
               
               Conread position:144-328
               
               
               Cow position:chr28:28765776-28765984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-339
               
               
               Cow position:chr28:11559505-11559724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 197

               
               
               Conread position:144-352
               
               
               Cow position:chr28:25195828-25195610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:144-353
               
               
               Cow position:chr28:2899116-2898894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):93, 151

               
               
               Conread position:144-354
               
               
               Cow position:chr28:4307769-4308009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr28:5144394-5144622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):93, 186

               
               
               Conread position:144-355
               
               
               Cow position:chr28:3011143-3011379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr28:7697855-7698086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr28:8359024-8358799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr28:11828835-11829044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 88

               
               
               Conread position:144-355
               
               
               Cow position:chr28:20313406-20313169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):8, 195

               
               
               Conread position:144-355
               
               
               Cow position:chr28:21363867-21363639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr28:26982611-26982843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr28:27218449-27218218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):88, 69

               
               
               Conread position:145-240
               
               
               Cow position:chr28:26269512-26269417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-230
               
               
               Cow position:chr28:8656042-8656125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:76
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:146-279
               
               
               Cow position:chr28:16353568-16353698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:146-352
               
               
               Cow position:chr28:30293463-30293689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:148-355
               
               
               Cow position:chr28:5166890-5166660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:149-248
               
               
               Cow position:chr28:16692045-16691947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:149-351
               
               
               Cow position:chr28:18759933-18760150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr28:11307395-11307612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):21, 142

               
               
               Conread position:149-355
               
               
               Cow position:chr28:8408846-8408628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr28:22321541-22321320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr28:26922246-26922473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:150-353
               
               
               Cow position:chr28:34877861-34878074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:153-343
               
               
               Cow position:chr28:7388654-7388861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):77, 205

               
               
               Conread position:153-354
               
               
               Cow position:chr28:1538277-1538066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:154-355
               
               
               Cow position:chr28:18354210-18354429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:155-349
               
               
               Cow position:chr28:13176573-13176783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 171

               
               
               Conread position:162-355
               
               
               Cow position:chr28:21380988-21380772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):71, 22

               
               
               Conread position:201-349
               
               
               Cow position:chr28:28076362-28076510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:229-355
               
               
               Cow position:chr28:16252827-16252966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:231-355
               
               
               Cow position:chr28:33893985-33894115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:232-351
               
               
               Cow position:chr28:17288240-17288116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:240-353
               
               
               Cow position:chr28:4022404-4022281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr28:118034-118158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:241-355
               
               
               Cow position:chr28:19222587-19222702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:244-355
               
               
               Cow position:chr28:22739804-22739686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:272-355
               
               
               Cow position:chr28:7644426-7644343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:76
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:276-355
               
               
               Cow position:chr28:23840174-23840095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:80
               
               
               Alignm identity:71
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:278-355
               
               
               Cow position:chr28:3105221-3105144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:78
               
               
               Alignm identity:70
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-250
               
               
               Cow position:chr29:21443139-21443323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:67-355
               
               
               Cow position:chr29:28979301-28979594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:69-355
               
               
               Cow position:chr29:22777968-22778290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:71-229
               
               
               Cow position:chr29:7381336-7381495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:71-248
               
               
               Cow position:chr29:26539441-26539250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:71-355
               
               
               Cow position:chr29:17297348-17297021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:72-231
               
               
               Cow position:chr29:32655885-32656059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:73-230
               
               
               Cow position:chr29:22028753-22028921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:73-230
               
               
               Cow position:chr29:38775823-38775654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:73-355
               
               
               Cow position:chr29:17110161-17109855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 172

               
               
               Conread position:74-240
               
               
               Cow position:chr29:35501458-35501630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:74-329
               
               
               Cow position:chr29:23812840-23813123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 269

               
               
               Conread position:75-230
               
               
               Cow position:chr29:4648006-4648175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:75-355
               
               
               Cow position:chr29:27816542-27816242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):68, 247

               
               
               Conread position:76-218
               
               
               Cow position:chr29:17718827-17718973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):69, 101

               
               
               Conread position:76-305
               
               
               Cow position:chr29:1011388-1011637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:76-351
               
               
               Cow position:chr29:32963728-32963447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 208

               
               
               Conread position:77-251
               
               
               Cow position:chr29:16561570-16561755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):44, 126

               
               
               Conread position:77-272
               
               
               Cow position:chr29:9622504-9622701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:77-273
               
               
               Cow position:chr29:396606-396388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:81-247
               
               
               Cow position:chr29:5520284-5520467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):41, 179

               
               
               Conread position:81-248
               
               
               Cow position:chr29:8163627-8163812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 182

               
               
               Conread position:81-248
               
               
               Cow position:chr29:29308382-29308556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr29:40117765-40117587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 135

               
               
               Conread position:81-250
               
               
               Cow position:chr29:31221944-31221762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:81-355
               
               
               Cow position:chr29:28775276-28775570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:82-209
               
               
               Cow position:chr29:8841250-8841390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-230
               
               
               Cow position:chr29:7414693-7414535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:82-231
               
               
               Cow position:chr29:41112691-41112848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:82-240
               
               
               Cow position:chr29:15947368-15947191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-253
               
               
               Cow position:chr29:22162065-22162237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:82-355
               
               
               Cow position:chr29:706776-707060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:82-355
               
               
               Cow position:chr29:23698169-23697866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:83-220
               
               
               Cow position:chr29:15954906-15954774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:83-228
               
               
               Cow position:chr29:415199-415052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:83-232
               
               
               Cow position:chr29:26208157-26208007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr29:36781112-36781275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr29:16290921-16290750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):39, 54

               
               
               Conread position:83-240
               
               
               Cow position:chr29:34297373-34297544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr29:14577055-14576876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):42, 174

               
               
               Conread position:83-248
               
               
               Cow position:chr29:19420422-19420596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 169

               
               
               Conread position:83-253
               
               
               Cow position:chr29:31982019-31981843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:83-330
               
               
               Cow position:chr29:13487120-13486861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:83-348
               
               
               Cow position:chr29:3685323-3685618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):39, 140

               
               
               Conread position:83-352
               
               
               Cow position:chr29:2056258-2055948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr29:7310861-7310577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 136

               
               
               Conread position:83-353
               
               
               Cow position:chr29:8862301-8862590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-353
               
               
               Cow position:chr29:12025281-12025581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 128

               
               
               Conread position:83-353
               
               
               Cow position:chr29:35292284-35291979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 281

               
               
               Conread position:83-354
               
               
               Cow position:chr29:41531049-41530735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:83-355
               
               
               Cow position:chr29:6337848-6337548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:83-355
               
               
               Cow position:chr29:10818261-10818548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 162

               
               
               Conread position:83-355
               
               
               Cow position:chr29:28195335-28195626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr29:29769156-29769464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr29:31926123-31926402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):6, 42

               
               
               Conread position:83-355
               
               
               Cow position:chr29:40891509-40891809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):31, 132

               
               
               Conread position:84-355
               
               
               Cow position:chr29:6636275-6635984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 98

               
               
               Conread position:84-355
               
               
               Cow position:chr29:37599045-37599320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):154, 31

               
               
               Conread position:85-231
               
               
               Cow position:chr29:23678897-23678742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:86-248
               
               
               Cow position:chr29:3293138-3292965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:86-328
               
               
               Cow position:chr29:32894452-32894182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:87-246
               
               
               Cow position:chr29:37293221-37293054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:87-252
               
               
               Cow position:chr29:13064044-13063869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:87-351
               
               
               Cow position:chr29:4085490-4085212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:87-353
               
               
               Cow position:chr29:10653516-10653234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 242

               
               
               Conread position:89-232
               
               
               Cow position:chr29:10191853-10192008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:92-248
               
               
               Cow position:chr29:23825851-23825689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 151

               
               
               Conread position:93-248
               
               
               Cow position:chr29:4423262-4423422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 155

               
               
               Conread position:94-253
               
               
               Cow position:chr29:39111137-39111299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:95-355
               
               
               Cow position:chr29:34359640-34359915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):27, 210

               
               
               Conread position:130-353
               
               
               Cow position:chr29:11705247-11705012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):30, 182

               
               
               Conread position:137-231
               
               
               Cow position:chr29:31934506-31934412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:79
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-245
               
               
               Cow position:chr29:27042399-27042292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr29:23142207-23142318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-254
               
               
               Cow position:chr29:16365758-16365877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr29:40097089-40096851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):88, 215

               
               
               Conread position:141-248
               
               
               Cow position:chr29:21509975-21509867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:141-353
               
               
               Cow position:chr29:19821407-19821176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:143-352
               
               
               Cow position:chr29:39567803-39567577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:144-240
               
               
               Cow position:chr29:27911710-27911615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr29:27926893-27926798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr29:18878361-18878466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr29:24051262-24051364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:144-250
               
               
               Cow position:chr29:7103678-7103573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-325
               
               
               Cow position:chr29:7040752-7040927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 85

               
               
               Conread position:144-351
               
               
               Cow position:chr29:847522-847750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 176

               
               
               Conread position:144-351
               
               
               Cow position:chr29:29551965-29551743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:144-352
               
               
               Cow position:chr29:38582088-38581866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr29:29057296-29057072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 198

               
               
               Conread position:144-354
               
               
               Cow position:chr29:42771755-42771539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:144-355
               
               
               Cow position:chr29:3100148-3100370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:144-355
               
               
               Cow position:chr29:6286041-6286271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr29:7425749-7425525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 64

               
               
               Conread position:144-355
               
               
               Cow position:chr29:8669473-8669254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):86, 9

               
               
               Conread position:144-355
               
               
               Cow position:chr29:12783843-12784069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:144-355
               
               
               Cow position:chr29:26653923-26654149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):14, 184

               
               
               Conread position:144-355
               
               
               Cow position:chr29:30227162-30227386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):85, 53

               
               
               Conread position:144-355
               
               
               Cow position:chr29:39329483-39329707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr29:962022-961812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 187

               
               
               Conread position:147-231
               
               
               Cow position:chr29:36220651-36220567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:75
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:148-231
               
               
               Cow position:chr29:22818890-22818807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:148-321
               
               
               Cow position:chr29:13867094-13867291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:148-353
               
               
               Cow position:chr29:27858903-27858683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):82, 178

               
               
               Conread position:149-248
               
               
               Cow position:chr29:25333346-25333442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:149-267
               
               
               Cow position:chr29:34517376-34517502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:149-320
               
               
               Cow position:chr29:21645424-21645246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 51

               
               
               Conread position:149-353
               
               
               Cow position:chr29:22936386-22936159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr29:40298905-40299120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 176

               
               
               Conread position:149-354
               
               
               Cow position:chr29:19125437-19125231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 113

               
               
               Conread position:149-355
               
               
               Cow position:chr29:44378304-44378528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:150-330
               
               
               Cow position:chr29:31814053-31813860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr29:4334832-4334615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):76, 175

               
               
               Conread position:150-355
               
               
               Cow position:chr29:32799598-32799821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:152-322
               
               
               Cow position:chr29:8004815-8005003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:153-355
               
               
               Cow position:chr29:6293369-6293587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:153-355
               
               
               Cow position:chr29:40583896-40583680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):80, 20

               
               
               Conread position:155-355
               
               
               Cow position:chr29:94465-94666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:159-250
               
               
               Cow position:chr29:31211722-31211632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:79
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:159-355
               
               
               Cow position:chr29:4520439-4520222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:173-355
               
               
               Cow position:chr29:30188261-30188452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:174-355
               
               
               Cow position:chr29:41365199-41364999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):60, 44

               
               
               Conread position:195-355
               
               
               Cow position:chr29:6217495-6217661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:197-355
               
               
               Cow position:chr29:16757102-16756946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:201-349
               
               
               Cow position:chr29:32767482-32767630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:225-353
               
               
               Cow position:chr29:36183305-36183170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:232-354
               
               
               Cow position:chr29:12004745-12004869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:232-355
               
               
               Cow position:chr29:1583109-1582984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:233-355
               
               
               Cow position:chr29:26206880-26206755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:233-355
               
               
               Cow position:chr29:39643192-39643064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:68-347
               
               
               Cow position:chr3:13329603-13329905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:71-240
               
               
               Cow position:chr3:74846538-74846707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 82

               
               
               Conread position:71-355
               
               
               Cow position:chr3:3556736-3556416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:71-355
               
               
               Cow position:chr3:48363256-48362949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 211

               
               
               Conread position:71-355
               
               
               Cow position:chr3:56476861-56476545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):56, 272

               
               
               Conread position:72-227
               
               
               Cow position:chr3:2637132-2636964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:72-235
               
               
               Cow position:chr3:74050520-74050695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:72-247
               
               
               Cow position:chr3:80023129-80023317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:72-322
               
               
               Cow position:chr3:44960832-44961092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):61, 204

               
               
               Conread position:73-228
               
               
               Cow position:chr3:49787741-49787572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:73-235
               
               
               Cow position:chr3:24774827-24774660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:73-250
               
               
               Cow position:chr3:29234493-29234689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:73-352
               
               
               Cow position:chr3:76138644-76138348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 118

               
               
               Conread position:73-354
               
               
               Cow position:chr3:15443541-15443864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:74-209
               
               
               Cow position:chr3:24370575-24370434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:74-248
               
               
               Cow position:chr3:61023837-61024028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:74-252
               
               
               Cow position:chr3:31115093-31115281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:74-283
               
               
               Cow position:chr3:16107191-16107414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:74-353
               
               
               Cow position:chr3:18459354-18459654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):44, 9

               
               
               Conread position:75-235
               
               
               Cow position:chr3:4549200-4549034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 42

               
               
               Conread position:75-248
               
               
               Cow position:chr3:27286699-27286513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 181

               
               
               Conread position:75-248
               
               
               Cow position:chr3:70402821-70402637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):45, 146

               
               
               Conread position:75-250
               
               
               Cow position:chr3:62789766-62789963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:75-352
               
               
               Cow position:chr3:17134514-17134204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):47, 255

               
               
               Conread position:75-353
               
               
               Cow position:chr3:2506292-2506609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):20, 147

               
               
               Conread position:75-354
               
               
               Cow position:chr3:8393522-8393217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:75-355
               
               
               Cow position:chr3:28908033-28908337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):71, 278

               
               
               Conread position:75-355
               
               
               Cow position:chr3:33252709-33253012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:76-233
               
               
               Cow position:chr3:70264046-70264202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:76-330
               
               
               Cow position:chr3:26792637-26792364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 260

               
               
               Conread position:76-355
               
               
               Cow position:chr3:7330956-7331248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):76, 96

               
               
               Conread position:76-355
               
               
               Cow position:chr3:23408182-23408487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:77-226
               
               
               Cow position:chr3:39996712-39996872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:77-230
               
               
               Cow position:chr3:3453764-3453591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:77-232
               
               
               Cow position:chr3:77098643-77098813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:77-240
               
               
               Cow position:chr3:56948915-56949086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:77-248
               
               
               Cow position:chr3:15160698-15160513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:77-248
               
               
               Cow position:chr3:29827986-29828153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):126, 62

               
               
               Conread position:77-248
               
               
               Cow position:chr3:35075054-35074873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 176

               
               
               Conread position:77-251
               
               
               Cow position:chr3:25060498-25060317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:77-355
               
               
               Cow position:chr3:18393219-18393523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):22, 224

               
               
               Conread position:78-252
               
               
               Cow position:chr3:79272396-79272584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:78-253
               
               
               Cow position:chr3:73335459-73335274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 175

               
               
               Conread position:78-352
               
               
               Cow position:chr3:31309174-31309486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:78-353
               
               
               Cow position:chr3:51578143-51578454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 140

               
               
               Conread position:78-355
               
               
               Cow position:chr3:15228661-15228954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:78-355
               
               
               Cow position:chr3:20802460-20802758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 248

               
               
               Conread position:79-248
               
               
               Cow position:chr3:4271544-4271367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 172

               
               
               Conread position:80-351
               
               
               Cow position:chr3:69750557-69750833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:81-230
               
               
               Cow position:chr3:2016609-2016447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-230
               
               
               Cow position:chr3:29494671-29494810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):6, 55

               
               
               Conread position:81-240
               
               
               Cow position:chr3:76056111-76056283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr3:55730288-55730474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):6, 181

               
               
               Conread position:81-349
               
               
               Cow position:chr3:51403073-51402779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:81-352
               
               
               Cow position:chr3:71478769-71478460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:81-353
               
               
               Cow position:chr3:14599097-14598818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:81-355
               
               
               Cow position:chr3:18067309-18067000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:82-235
               
               
               Cow position:chr3:73701674-73701510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:82-247
               
               
               Cow position:chr3:59605018-59604838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:82-249
               
               
               Cow position:chr3:76270064-76269884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 128

               
               
               Conread position:82-253
               
               
               Cow position:chr3:55177575-55177756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):41, 171

               
               
               Conread position:82-273
               
               
               Cow position:chr3:71423393-71423598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:82-350
               
               
               Cow position:chr3:68707846-68708134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:82-350
               
               
               Cow position:chr3:68880955-68881242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:82-355
               
               
               Cow position:chr3:36418311-36418601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 267

               
               
               Conread position:82-355
               
               
               Cow position:chr3:67520000-67520307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-226
               
               
               Cow position:chr3:16362340-16362489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-228
               
               
               Cow position:chr3:40212860-40213020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr3:11229195-11229353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr3:18699933-18700099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr3:31804595-31804747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:83-230
               
               
               Cow position:chr3:75966607-75966772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr3:14211811-14211972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr3:22092300-22092160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr3:22094439-22094588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:83-231
               
               
               Cow position:chr3:54905781-54905625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-232
               
               
               Cow position:chr3:9641730-9641577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:83-235
               
               
               Cow position:chr3:3698819-3698666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:83-235
               
               
               Cow position:chr3:79207540-79207696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:83-238
               
               
               Cow position:chr3:32610419-32610264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:83-240
               
               
               Cow position:chr3:27246792-27246957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-247
               
               
               Cow position:chr3:525502-525340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 66

               
               
               Conread position:83-247
               
               
               Cow position:chr3:39873533-39873700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:83-247
               
               
               Cow position:chr3:59681732-59681912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr3:3163940-3164115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:83-248
               
               
               Cow position:chr3:15153863-15153686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 172

               
               
               Conread position:83-248
               
               
               Cow position:chr3:15859207-15859384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):39, 109

               
               
               Conread position:83-248
               
               
               Cow position:chr3:32127244-32127412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:83-248
               
               
               Cow position:chr3:59885706-59885535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):39, 133

               
               
               Conread position:83-248
               
               
               Cow position:chr3:75777894-75778067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):39, 170

               
               
               Conread position:83-248
               
               
               Cow position:chr3:78071617-78071796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 174

               
               
               Conread position:83-249
               
               
               Cow position:chr3:70333054-70333227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 148

               
               
               Conread position:83-250
               
               
               Cow position:chr3:69650723-69650896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:83-252
               
               
               Cow position:chr3:3036766-3036936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:83-253
               
               
               Cow position:chr3:18831593-18831411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 172

               
               
               Conread position:83-266
               
               
               Cow position:chr3:17936672-17936865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-340
               
               
               Cow position:chr3:58527552-58527277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 248

               
               
               Conread position:83-343
               
               
               Cow position:chr3:48468351-48468059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-347
               
               
               Cow position:chr3:31225597-31225312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):41, 52

               
               
               Conread position:83-348
               
               
               Cow position:chr3:24872867-24872586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:83-349
               
               
               Cow position:chr3:3649064-3649347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:83-350
               
               
               Cow position:chr3:81337395-81337133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:83-351
               
               
               Cow position:chr3:71231573-71231266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 160

               
               
               Conread position:83-352
               
               
               Cow position:chr3:5365840-5365545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:83-352
               
               
               Cow position:chr3:20996827-20997122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:83-352
               
               
               Cow position:chr3:75853160-75853463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:83-353
               
               
               Cow position:chr3:18687076-18686774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr3:29359989-29360273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-353
               
               
               Cow position:chr3:45648280-45647999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):145, 12

               
               
               Conread position:83-353
               
               
               Cow position:chr3:58764911-58765212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr3:59474295-59473987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 273

               
               
               Conread position:83-354
               
               
               Cow position:chr3:2392794-2393097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr3:3985492-3985193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr3:83491255-83490952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 127

               
               
               Conread position:83-355
               
               
               Cow position:chr3:5374484-5374199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:83-355
               
               
               Cow position:chr3:14553047-14552743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 272

               
               
               Conread position:83-355
               
               
               Cow position:chr3:17331894-17331591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:83-355
               
               
               Cow position:chr3:20841704-20841990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):21, 205

               
               
               Conread position:83-355
               
               
               Cow position:chr3:24468209-24468514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr3:26982224-26981931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr3:29813401-29813109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr3:30180258-30179946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr3:48253054-48252749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 245

               
               
               Conread position:83-355
               
               
               Cow position:chr3:55318723-55319037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):39, 111

               
               
               Conread position:83-355
               
               
               Cow position:chr3:55712606-55712296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr3:65058874-65058568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):24, 280

               
               
               Conread position:83-355
               
               
               Cow position:chr3:75050448-75050754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 147

               
               
               Conread position:84-253
               
               
               Cow position:chr3:15973744-15973556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 178

               
               
               Conread position:84-271
               
               
               Cow position:chr3:23753658-23753455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):38, 143

               
               
               Conread position:84-307
               
               
               Cow position:chr3:23804676-23804429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:84-355
               
               
               Cow position:chr3:25477966-25477679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:85-222
               
               
               Cow position:chr3:10591340-10591484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:85-235
               
               
               Cow position:chr3:76922500-76922656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:85-353
               
               
               Cow position:chr3:71238322-71238023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):37, 9

               
               
               Conread position:85-354
               
               
               Cow position:chr3:59597346-59597049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:85-355
               
               
               Cow position:chr3:2630933-2630659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:86-223
               
               
               Cow position:chr3:31489878-31489738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:86-243
               
               
               Cow position:chr3:11607989-11607820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:86-249
               
               
               Cow position:chr3:35582994-35582832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:86-349
               
               
               Cow position:chr3:53836538-53836814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 209

               
               
               Conread position:86-353
               
               
               Cow position:chr3:68587191-68586887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):12, 100

               
               
               Conread position:86-355
               
               
               Cow position:chr3:46541679-46541963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 69

               
               
               Conread position:86-355
               
               
               Cow position:chr3:48241778-48241481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:87-219
               
               
               Cow position:chr3:43527623-43527761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-240
               
               
               Cow position:chr3:41863793-41863627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-247
               
               
               Cow position:chr3:11716145-11715989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):146, 22

               
               
               Conread position:87-248
               
               
               Cow position:chr3:28323381-28323211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-248
               
               
               Cow position:chr3:54557837-54557669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 163

               
               
               Conread position:87-317
               
               
               Cow position:chr3:3818935-3818697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:87-348
               
               
               Cow position:chr3:54739729-54740017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):37, 128

               
               
               Conread position:87-353
               
               
               Cow position:chr3:13577048-13577320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:87-354
               
               
               Cow position:chr3:3889406-3889701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:87-355
               
               
               Cow position:chr3:6873100-6873378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):148, 28

               
               
               Conread position:87-355
               
               
               Cow position:chr3:15051781-15052087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr3:26904270-26903981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:87-355
               
               
               Cow position:chr3:57764384-57764092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:87-355
               
               
               Cow position:chr3:73764044-73764330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:89-348
               
               
               Cow position:chr3:73299234-73298958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:90-355
               
               
               Cow position:chr3:47417403-47417701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:92-231
               
               
               Cow position:chr3:42967226-42967367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:92-248
               
               
               Cow position:chr3:18001352-18001191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:92-349
               
               
               Cow position:chr3:34271065-34270786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:92-355
               
               
               Cow position:chr3:51233938-51234231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:94-344
               
               
               Cow position:chr3:59000599-59000876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):28, 135

               
               
               Conread position:95-354
               
               
               Cow position:chr3:82055965-82056243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:96-355
               
               
               Cow position:chr3:7566259-7566554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):26, 267

               
               
               Conread position:97-355
               
               
               Cow position:chr3:77427538-77427264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 199

               
               
               Conread position:99-354
               
               
               Cow position:chr3:4050340-4050060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:106-249
               
               
               Cow position:chr3:4086726-4086870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 138

               
               
               Conread position:110-327
               
               
               Cow position:chr3:55010028-55010271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:122-349
               
               
               Cow position:chr3:70402017-70401772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:123-355
               
               
               Cow position:chr3:53739064-53739321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:123-355
               
               
               Cow position:chr3:54100604-54100856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:123-355
               
               
               Cow position:chr3:54960296-54960055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:126-354
               
               
               Cow position:chr3:72676207-72675958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:131-231
               
               
               Cow position:chr3:85044301-85044401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-227
               
               
               Cow position:chr3:25702237-25702327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:77
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-231
               
               
               Cow position:chr3:47199022-47199116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-240
               
               
               Cow position:chr3:53113280-53113177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr3:48900228-48900339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-349
               
               
               Cow position:chr3:42796416-42796638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):92, 22

               
               
               Conread position:137-352
               
               
               Cow position:chr3:5696630-5696862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:137-353
               
               
               Cow position:chr3:61144199-61143967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):95, 179

               
               
               Conread position:137-353
               
               
               Cow position:chr3:78894236-78894456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:137-354
               
               
               Cow position:chr3:59621543-59621779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):96, 211

               
               
               Conread position:137-355
               
               
               Cow position:chr3:21081281-21081509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 135

               
               
               Conread position:137-355
               
               
               Cow position:chr3:43727176-43726942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 215

               
               
               Conread position:137-355
               
               
               Cow position:chr3:53046558-53046792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):96, 192

               
               
               Conread position:137-355
               
               
               Cow position:chr3:59691993-59691763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:137-355
               
               
               Cow position:chr3:69961631-69961849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:137-355
               
               
               Cow position:chr3:77582210-77581974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:140-351
               
               
               Cow position:chr3:26970915-26970696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:142-344
               
               
               Cow position:chr3:53240357-53240138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:143-230
               
               
               Cow position:chr3:7381734-7381821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:143-235
               
               
               Cow position:chr3:42589198-42589105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:144-221
               
               
               Cow position:chr3:59451702-59451625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:78
               
               
               Alignm identity:71
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-228
               
               
               Cow position:chr3:18426964-18427048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:74
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr3:11640831-11640744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:77
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-238
               
               
               Cow position:chr3:48374810-48374719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr3:56704223-56704319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:80
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr3:83199608-83199513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr3:27976426-27976528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr3:23203134-23203236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr3:84137717-84137820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-252
               
               
               Cow position:chr3:41366612-41366721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-253
               
               
               Cow position:chr3:76300869-76300762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):100, 88

               
               
               Conread position:144-273
               
               
               Cow position:chr3:37851595-37851463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:144-296
               
               
               Cow position:chr3:82366226-82366057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:144-323
               
               
               Cow position:chr3:75238555-75238354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-337
               
               
               Cow position:chr3:72503798-72504016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:144-345
               
               
               Cow position:chr3:8901727-8901517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:144-352
               
               
               Cow position:chr3:49231097-49230885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:144-353
               
               
               Cow position:chr3:54903662-54903442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr3:57624562-57624332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):89, 219

               
               
               Conread position:144-353
               
               
               Cow position:chr3:66900635-66900869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):89, 196

               
               
               Conread position:144-354
               
               
               Cow position:chr3:12711817-12712052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr3:13301753-13301982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:144-354
               
               
               Cow position:chr3:47284910-47284705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):115, 17

               
               
               Conread position:144-354
               
               
               Cow position:chr3:76713218-76713458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr3:79292925-79292696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):84, 18

               
               
               Conread position:144-354
               
               
               Cow position:chr3:80053446-80053673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:144-355
               
               
               Cow position:chr3:653984-654197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 146

               
               
               Conread position:144-355
               
               
               Cow position:chr3:5044715-5044938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr3:32457291-32457065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):88, 38

               
               
               Conread position:144-355
               
               
               Cow position:chr3:36375442-36375677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 198

               
               
               Conread position:144-355
               
               
               Cow position:chr3:38783704-38783481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr3:53318499-53318269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:144-355
               
               
               Cow position:chr3:59035138-59034902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:145-231
               
               
               Cow position:chr3:63069269-63069355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:78
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-248
               
               
               Cow position:chr3:62186248-62186146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:145-344
               
               
               Cow position:chr3:68156820-68156610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:145-354
               
               
               Cow position:chr3:76267878-76268113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr3:57760595-57760364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr3:72255324-72255525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):103, 44

               
               
               Conread position:145-355
               
               
               Cow position:chr3:75687341-75687573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):83, 27

               
               
               Conread position:146-231
               
               
               Cow position:chr3:67942440-67942525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:75
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-253
               
               
               Cow position:chr3:84807232-84807340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:146-354
               
               
               Cow position:chr3:70334599-70334829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:146-355
               
               
               Cow position:chr3:44102063-44101836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):87, 27

               
               
               Conread position:148-355
               
               
               Cow position:chr3:59208888-59208679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:148-355
               
               
               Cow position:chr3:73395210-73394986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:149-349
               
               
               Cow position:chr3:45308000-45307804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:149-351
               
               
               Cow position:chr3:5100679-5100898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr3:48296791-48296576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):80, 112

               
               
               Conread position:149-353
               
               
               Cow position:chr3:63179935-63179729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 59

               
               
               Conread position:149-354
               
               
               Cow position:chr3:7661945-7661718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:149-354
               
               
               Cow position:chr3:48578897-48578700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:149-354
               
               
               Cow position:chr3:52863090-52863318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr3:24935457-24935235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:149-355
               
               
               Cow position:chr3:53270923-53270694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr3:60265161-60265377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):87, 83

               
               
               Conread position:149-355
               
               
               Cow position:chr3:67930092-67930318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):11, 57

               
               
               Conread position:150-342
               
               
               Cow position:chr3:78945747-78945957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:150-353
               
               
               Cow position:chr3:46005930-46006159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:150-355
               
               
               Cow position:chr3:6853445-6853640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):87, 69

               
               
               Conread position:150-355
               
               
               Cow position:chr3:27696886-27697112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:150-355
               
               
               Cow position:chr3:55970598-55970371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):81, 22

               
               
               Conread position:150-355
               
               
               Cow position:chr3:73820279-73820505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:151-354
               
               
               Cow position:chr3:59883978-59884206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:151-355
               
               
               Cow position:chr3:20663458-20663668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):103, 93

               
               
               Conread position:151-355
               
               
               Cow position:chr3:31850286-31850504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):85, 176

               
               
               Conread position:151-355
               
               
               Cow position:chr3:68632668-68632867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 165

               
               
               Conread position:152-355
               
               
               Cow position:chr3:17235127-17235344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:152-355
               
               
               Cow position:chr3:80581745-80581529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:153-352
               
               
               Cow position:chr3:7678742-7678536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:153-352
               
               
               Cow position:chr3:59588599-59588388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):79, 190

               
               
               Conread position:153-352
               
               
               Cow position:chr3:72391171-72390953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:153-354
               
               
               Cow position:chr3:77006559-77006366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:153-355
               
               
               Cow position:chr3:66883855-66884075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:154-349
               
               
               Cow position:chr3:16254753-16254953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 151

               
               
               Conread position:156-353
               
               
               Cow position:chr3:59630427-59630635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):93, 77

               
               
               Conread position:156-355
               
               
               Cow position:chr3:8733273-8733490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:156-355
               
               
               Cow position:chr3:34669647-34669862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:159-355
               
               
               Cow position:chr3:74502242-74502455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:161-355
               
               
               Cow position:chr3:5097288-5097071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:163-355
               
               
               Cow position:chr3:80468599-80468810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):70, 41

               
               
               Conread position:167-353
               
               
               Cow position:chr3:71238544-71238340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:167-355
               
               
               Cow position:chr3:3638253-3638052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:175-354
               
               
               Cow position:chr3:78896714-78896515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 158

               
               
               Conread position:185-355
               
               
               Cow position:chr3:66609787-66609978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:188-354
               
               
               Cow position:chr3:74878535-74878723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:219-355
               
               
               Cow position:chr3:27544319-27544467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):23, 131

               
               
               Conread position:225-355
               
               
               Cow position:chr3:9843589-9843452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:230-355
               
               
               Cow position:chr3:18056436-18056308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 35

               
               
               Conread position:231-355
               
               
               Cow position:chr3:3062564-3062428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:232-351
               
               
               Cow position:chr3:69849512-69849638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr3:19708109-19708237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr3:44622891-44623018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-354
               
               
               Cow position:chr3:35005771-35005644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-354
               
               
               Cow position:chr3:59515099-59514970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 88

               
               
               Conread position:232-355
               
               
               Cow position:chr3:15790550-15790425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 89

               
               
               Conread position:232-355
               
               
               Cow position:chr3:49218319-49218449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:233-354
               
               
               Cow position:chr3:75152047-75152170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:234-355
               
               
               Cow position:chr3:25060073-25059943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:238-355
               
               
               Cow position:chr3:76169297-76169420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:240-355
               
               
               Cow position:chr3:61024314-61024438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:242-353
               
               
               Cow position:chr3:49731654-49731774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-354
               
               
               Cow position:chr3:6900614-6900498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:245-353
               
               
               Cow position:chr3:75967027-75967134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:248-355
               
               
               Cow position:chr3:25691730-25691618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:71-227
               
               
               Cow position:chr4:30250079-30250239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:71-231
               
               
               Cow position:chr4:67393299-67393119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:71-247
               
               
               Cow position:chr4:56805369-56805189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:71-355
               
               
               Cow position:chr4:53209405-53209120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:73-228
               
               
               Cow position:chr4:66168137-66168301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:73-231
               
               
               Cow position:chr4:34510030-34509868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:73-248
               
               
               Cow position:chr4:20124767-20124956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 186

               
               
               Conread position:73-355
               
               
               Cow position:chr4:25356129-25356426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 145

               
               
               Conread position:74-235
               
               
               Cow position:chr4:22331320-22331148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:74-248
               
               
               Cow position:chr4:21520767-21520590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:74-355
               
               
               Cow position:chr4:8801688-8801382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:75-221
               
               
               Cow position:chr4:12748221-12748375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:75-354
               
               
               Cow position:chr4:25227132-25226832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:75-355
               
               
               Cow position:chr4:34310266-34310569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 61

               
               
               Conread position:75-355
               
               
               Cow position:chr4:68076339-68076648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):13, 114

               
               
               Conread position:76-245
               
               
               Cow position:chr4:21112374-21112559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 147

               
               
               Conread position:76-355
               
               
               Cow position:chr4:27530311-27529998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:76-355
               
               
               Cow position:chr4:52780043-52779733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:77-235
               
               
               Cow position:chr4:21506767-21506932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:77-235
               
               
               Cow position:chr4:36517302-36517459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:77-248
               
               
               Cow position:chr4:54938077-54937907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:77-273
               
               
               Cow position:chr4:5790844-5790622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:77-273
               
               
               Cow position:chr4:14131621-14131407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:77-352
               
               
               Cow position:chr4:16513331-16513636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:77-355
               
               
               Cow position:chr4:19238416-19238120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 180

               
               
               Conread position:77-355
               
               
               Cow position:chr4:65463316-65463604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):38, 166

               
               
               Conread position:78-240
               
               
               Cow position:chr4:48409089-48409250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:78-266
               
               
               Cow position:chr4:57566498-57566704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:78-351
               
               
               Cow position:chr4:22073121-22073430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:78-355
               
               
               Cow position:chr4:10968201-10968504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):46, 249

               
               
               Conread position:80-355
               
               
               Cow position:chr4:10732416-10732104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:81-232
               
               
               Cow position:chr4:27657165-27657003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:81-235
               
               
               Cow position:chr4:21275420-21275577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:81-235
               
               
               Cow position:chr4:33360286-33360128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:81-248
               
               
               Cow position:chr4:28701538-28701369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):37, 150

               
               
               Conread position:81-252
               
               
               Cow position:chr4:47230803-47230992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:81-252
               
               
               Cow position:chr4:47283818-47284007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:81-273
               
               
               Cow position:chr4:23271477-23271275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):44, 169

               
               
               Conread position:81-352
               
               
               Cow position:chr4:33091544-33091264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):151, 49

               
               
               Conread position:81-355
               
               
               Cow position:chr4:22907692-22907401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):46, 258

               
               
               Conread position:82-235
               
               
               Cow position:chr4:40393003-40392839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-248
               
               
               Cow position:chr4:17774173-17774340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:82-253
               
               
               Cow position:chr4:51728266-51728084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:82-278
               
               
               Cow position:chr4:52823210-52823420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 175

               
               
               Conread position:82-349
               
               
               Cow position:chr4:23600346-23600066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:82-355
               
               
               Cow position:chr4:19745062-19744766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:83-222
               
               
               Cow position:chr4:66509817-66509674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:83-227
               
               
               Cow position:chr4:19200297-19200144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr4:34234654-34234500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:83-231
               
               
               Cow position:chr4:23943452-23943617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr4:30769223-30769063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):39, 137

               
               
               Conread position:83-231
               
               
               Cow position:chr4:45840583-45840426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr4:59055680-59055833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr4:44681069-44681228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):39, 54

               
               
               Conread position:83-238
               
               
               Cow position:chr4:12052146-12052308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:83-240
               
               
               Cow position:chr4:3299607-3299774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 128

               
               
               Conread position:83-240
               
               
               Cow position:chr4:14063105-14063265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:83-240
               
               
               Cow position:chr4:17790105-17790273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-242
               
               
               Cow position:chr4:8675558-8675385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):34, 148

               
               
               Conread position:83-245
               
               
               Cow position:chr4:16070494-16070663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:83-247
               
               
               Cow position:chr4:348241-348412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):65, 167

               
               
               Conread position:83-247
               
               
               Cow position:chr4:13140920-13141085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:83-247
               
               
               Cow position:chr4:15236814-15236645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:83-247
               
               
               Cow position:chr4:30691193-30691013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr4:479611-479780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:83-248
               
               
               Cow position:chr4:8083617-8083786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 164

               
               
               Conread position:83-248
               
               
               Cow position:chr4:31178013-31177836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 172

               
               
               Conread position:83-248
               
               
               Cow position:chr4:61608777-61608953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):31, 171

               
               
               Conread position:83-252
               
               
               Cow position:chr4:61999007-61999196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-253
               
               
               Cow position:chr4:46446996-46447175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:83-262
               
               
               Cow position:chr4:2537460-2537273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-328
               
               
               Cow position:chr4:45626450-45626714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:83-344
               
               
               Cow position:chr4:11611055-11610768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:83-350
               
               
               Cow position:chr4:29291697-29291405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-351
               
               
               Cow position:chr4:20147376-20147070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-351
               
               
               Cow position:chr4:37935111-37935399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:83-352
               
               
               Cow position:chr4:51769296-51768997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:83-352
               
               
               Cow position:chr4:59873617-59873315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:83-353
               
               
               Cow position:chr4:27632632-27632333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr4:36929483-36929200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:83-353
               
               
               Cow position:chr4:45662325-45662626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr4:10016444-10016713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 159

               
               
               Conread position:83-355
               
               
               Cow position:chr4:12591029-12591330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:83-355
               
               
               Cow position:chr4:12676986-12676686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:83-355
               
               
               Cow position:chr4:15439777-15439460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr4:19314178-19313892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 103

               
               
               Conread position:83-355
               
               
               Cow position:chr4:19558858-19558600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr4:20327532-20327829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:83-355
               
               
               Cow position:chr4:30003655-30003907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 55

               
               
               Conread position:83-355
               
               
               Cow position:chr4:45582931-45583238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr4:45685644-45685352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):42, 217

               
               
               Conread position:83-355
               
               
               Cow position:chr4:46597545-46597259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:83-355
               
               
               Cow position:chr4:49794841-49794553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 245

               
               
               Conread position:83-355
               
               
               Cow position:chr4:61391044-61391323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:84-248
               
               
               Cow position:chr4:54500854-54501011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:84-344
               
               
               Cow position:chr4:45725054-45724767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 136

               
               
               Conread position:85-248
               
               
               Cow position:chr4:21479061-21479219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:85-253
               
               
               Cow position:chr4:55694359-55694180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 163

               
               
               Conread position:85-355
               
               
               Cow position:chr4:16881184-16881482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:86-230
               
               
               Cow position:chr4:39569385-39569232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:86-244
               
               
               Cow position:chr4:22482508-22482341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):29, 157

               
               
               Conread position:86-344
               
               
               Cow position:chr4:22101073-22101368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-240
               
               
               Cow position:chr4:42231846-42232004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:87-247
               
               
               Cow position:chr4:32602013-32601846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:87-247
               
               
               Cow position:chr4:34699857-34700021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 146

               
               
               Conread position:87-248
               
               
               Cow position:chr4:25802881-25802702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:87-250
               
               
               Cow position:chr4:22849315-22849482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:87-352
               
               
               Cow position:chr4:16238982-16239266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 176

               
               
               Conread position:87-353
               
               
               Cow position:chr4:25370281-25370003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 228

               
               
               Conread position:87-353
               
               
               Cow position:chr4:29384054-29384339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 210

               
               
               Conread position:87-353
               
               
               Cow position:chr4:53126284-53126001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:87-355
               
               
               Cow position:chr4:19315820-19316121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-355
               
               
               Cow position:chr4:19597145-19597435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 227

               
               
               Conread position:88-335
               
               
               Cow position:chr4:44183934-44184210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:89-248
               
               
               Cow position:chr4:25929394-25929227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:89-352
               
               
               Cow position:chr4:53208468-53208178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:94-355
               
               
               Cow position:chr4:8770274-8769991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 83

               
               
               Conread position:94-355
               
               
               Cow position:chr4:23646690-23646961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:94-355
               
               
               Cow position:chr4:31004232-31004526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:95-355
               
               
               Cow position:chr4:45074229-45073945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:96-345
               
               
               Cow position:chr4:61066931-61066665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:97-212
               
               
               Cow position:chr4:60072575-60072698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:98-231
               
               
               Cow position:chr4:39092060-39091914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:98-354
               
               
               Cow position:chr4:37732321-37732601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:101-351
               
               
               Cow position:chr4:19584861-19584602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 37

               
               
               Conread position:102-352
               
               
               Cow position:chr4:13256243-13255972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:109-247
               
               
               Cow position:chr4:34983343-34983487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:110-348
               
               
               Cow position:chr4:1499039-1499294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:113-355
               
               
               Cow position:chr4:11496506-11496751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):6, 18

               
               
               Conread position:116-355
               
               
               Cow position:chr4:45575109-45574887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:119-354
               
               
               Cow position:chr4:38946355-38946090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:122-236
               
               
               Cow position:chr4:11366472-11366361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:122-353
               
               
               Cow position:chr4:25888696-25888946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:123-325
               
               
               Cow position:chr4:35834349-35834570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:124-352
               
               
               Cow position:chr4:65649998-65650239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 204

               
               
               Conread position:132-235
               
               
               Cow position:chr4:28781521-28781624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:134-351
               
               
               Cow position:chr4:1495284-1495515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):99, 73

               
               
               Conread position:137-227
               
               
               Cow position:chr4:30845493-30845403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr4:27699153-27699043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-250
               
               
               Cow position:chr4:56852969-56852858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:137-338
               
               
               Cow position:chr4:47510506-47510288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:137-347
               
               
               Cow position:chr4:45013055-45013275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):22, 36

               
               
               Conread position:137-348
               
               
               Cow position:chr4:19098594-19098357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):96, 216

               
               
               Conread position:137-351
               
               
               Cow position:chr4:37675736-37675500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:137-353
               
               
               Cow position:chr4:46455947-46456177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-353
               
               
               Cow position:chr4:56591159-56590924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 89

               
               
               Conread position:137-354
               
               
               Cow position:chr4:68764637-68764403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):92, 65

               
               
               Conread position:137-355
               
               
               Cow position:chr4:8705117-8704867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr4:18095551-18095789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr4:44782496-44782254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr4:45636288-45636045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 218

               
               
               Conread position:137-355
               
               
               Cow position:chr4:49089908-49089669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:142-355
               
               
               Cow position:chr4:22196099-22196310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):98, 32

               
               
               Conread position:143-238
               
               
               Cow position:chr4:57156785-57156880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:143-250
               
               
               Cow position:chr4:6093952-6094056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr4:22051001-22051097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr4:47038882-47038786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr4:19709054-19708950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr4:38358710-38358812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-253
               
               
               Cow position:chr4:22138106-22138215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 93

               
               
               Conread position:144-267
               
               
               Cow position:chr4:13919092-13918957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-272
               
               
               Cow position:chr4:43763184-43763055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):76, 65

               
               
               Conread position:144-326
               
               
               Cow position:chr4:61757776-61757590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 63

               
               
               Conread position:144-328
               
               
               Cow position:chr4:44772928-44773138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-337
               
               
               Cow position:chr4:63769948-63769746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):110, 93

               
               
               Conread position:144-349
               
               
               Cow position:chr4:12004329-12004112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-351
               
               
               Cow position:chr4:5609980-5610186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:144-351
               
               
               Cow position:chr4:11897191-11897413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:144-351
               
               
               Cow position:chr4:19700210-19699991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):80, 146

               
               
               Conread position:144-352
               
               
               Cow position:chr4:43515831-43515610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr4:41300883-41301107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:144-354
               
               
               Cow position:chr4:25879505-25879280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr4:26401069-26400843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:144-355
               
               
               Cow position:chr4:37313280-37313051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:145-354
               
               
               Cow position:chr4:2681443-2681237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 131

               
               
               Conread position:146-247
               
               
               Cow position:chr4:5904599-5904499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:146-248
               
               
               Cow position:chr4:19561901-19561800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:146-355
               
               
               Cow position:chr4:10999603-10999822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:149-240
               
               
               Cow position:chr4:53819576-53819667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:81
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-240
               
               
               Cow position:chr4:54937191-54937100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-252
               
               
               Cow position:chr4:57421160-57421055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:149-335
               
               
               Cow position:chr4:32693898-32693685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:149-352
               
               
               Cow position:chr4:22725200-22724988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 173

               
               
               Conread position:149-353
               
               
               Cow position:chr4:29805264-29805485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:149-354
               
               
               Cow position:chr4:37502923-37502702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr4:13222077-13222301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):88, 206

               
               
               Conread position:149-355
               
               
               Cow position:chr4:19542242-19542018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr4:41185810-41186028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):73, 168

               
               
               Conread position:150-230
               
               
               Cow position:chr4:54543555-54543635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:81
               
               
               Alignm identity:73
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:150-353
               
               
               Cow position:chr4:32726333-32726109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:150-354
               
               
               Cow position:chr4:65950763-65950537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 40

               
               
               Conread position:150-355
               
               
               Cow position:chr4:13941565-13941344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):80, 198

               
               
               Conread position:151-355
               
               
               Cow position:chr4:10056312-10056094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):70, 159

               
               
               Conread position:153-355
               
               
               Cow position:chr4:61451319-61451117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):121, 76

               
               
               Conread position:154-353
               
               
               Cow position:chr4:46591772-46591548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:154-355
               
               
               Cow position:chr4:21017-20800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 194

               
               
               Conread position:159-355
               
               
               Cow position:chr4:14920086-14919876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:166-351
               
               
               Cow position:chr4:18107067-18107273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:168-355
               
               
               Cow position:chr4:22744390-22744206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 111

               
               
               Conread position:176-353
               
               
               Cow position:chr4:17474522-17474322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:176-355
               
               
               Cow position:chr4:6148849-6149030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:184-350
               
               
               Cow position:chr4:51739642-51739823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:188-355
               
               
               Cow position:chr4:54930351-54930539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:229-355
               
               
               Cow position:chr4:68855660-68855536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:230-355
               
               
               Cow position:chr4:30929616-30929482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr4:65538403-65538536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:232-344
               
               
               Cow position:chr4:2774725-2774609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-349
               
               
               Cow position:chr4:11671464-11671341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr4:25359610-25359493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:232-354
               
               
               Cow position:chr4:46720155-46720279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr4:11901549-11901680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 76

               
               
               Conread position:232-355
               
               
               Cow position:chr4:32259833-32259963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 116

               
               
               Conread position:232-355
               
               
               Cow position:chr4:35939995-35940125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr4:36577618-36577749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr4:43749801-43749927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):20, 61

               
               
               Conread position:240-346
               
               
               Cow position:chr4:26683678-26683565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-353
               
               
               Cow position:chr4:48137916-48137794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:242-355
               
               
               Cow position:chr4:19561682-19561565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:242-355
               
               
               Cow position:chr4:68280835-68280943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:248-353
               
               
               Cow position:chr4:5047344-5047453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:277-353
               
               
               Cow position:chr4:38705815-38705891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:77
               
               
               Alignm identity:71
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:277-355
               
               
               Cow position:chr4:57555930-57555852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:71
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-248
               
               
               Cow position:chr5:56327483-56327676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 59

               
               
               Conread position:72-247
               
               
               Cow position:chr5:31648653-31648464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:73-247
               
               
               Cow position:chr5:34288018-34288208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 175

               
               
               Conread position:73-253
               
               
               Cow position:chr5:44163148-44163329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:73-349
               
               
               Cow position:chr5:47870818-47871123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):52, 154

               
               
               Conread position:73-352
               
               
               Cow position:chr5:14550346-14550664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:73-354
               
               
               Cow position:chr5:42677436-42677147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 51

               
               
               Conread position:73-355
               
               
               Cow position:chr5:8023979-8024281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:73-355
               
               
               Cow position:chr5:35763480-35763189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:74-230
               
               
               Cow position:chr5:20843163-20843333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 61

               
               
               Conread position:74-235
               
               
               Cow position:chr5:56524399-56524231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:74-253
               
               
               Cow position:chr5:40237424-40237251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):15, 75

               
               
               Conread position:74-355
               
               
               Cow position:chr5:12902154-12901831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:75-220
               
               
               Cow position:chr5:12562526-12562683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 116

               
               
               Conread position:75-248
               
               
               Cow position:chr5:59627326-59627145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:75-249
               
               
               Cow position:chr5:63172814-63172999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 175

               
               
               Conread position:75-319
               
               
               Cow position:chr5:15471152-15470882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:75-351
               
               
               Cow position:chr5:27155236-27154940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 111

               
               
               Conread position:75-355
               
               
               Cow position:chr5:37941573-37941875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):42, 249

               
               
               Conread position:75-355
               
               
               Cow position:chr5:41226768-41227069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):12, 190

               
               
               Conread position:76-235
               
               
               Cow position:chr5:14314749-14314585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 77

               
               
               Conread position:76-248
               
               
               Cow position:chr5:16668923-16668742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:76-273
               
               
               Cow position:chr5:57447431-57447646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):46, 174

               
               
               Conread position:76-354
               
               
               Cow position:chr5:42667192-42667471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):47, 79

               
               
               Conread position:76-355
               
               
               Cow position:chr5:14903831-14904152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 284

               
               
               Conread position:76-355
               
               
               Cow position:chr5:28927390-28927675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):98, 46

               
               
               Conread position:77-230
               
               
               Cow position:chr5:17105077-17104912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:77-232
               
               
               Cow position:chr5:25598057-25597891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 47

               
               
               Conread position:77-235
               
               
               Cow position:chr5:28302524-28302686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:77-248
               
               
               Cow position:chr5:19079475-19079297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):45, 121

               
               
               Conread position:77-353
               
               
               Cow position:chr5:50576000-50575701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:77-355
               
               
               Cow position:chr5:30276919-30276611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:77-355
               
               
               Cow position:chr5:56028313-56028613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 260

               
               
               Conread position:78-253
               
               
               Cow position:chr5:40109715-40109533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 150

               
               
               Conread position:78-271
               
               
               Cow position:chr5:7713979-7713776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 75

               
               
               Conread position:81-231
               
               
               Cow position:chr5:20994859-20995025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:81-235
               
               
               Cow position:chr5:37253651-37253486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:81-238
               
               
               Cow position:chr5:22957631-22957464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr5:42845369-42845548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:81-248
               
               
               Cow position:chr5:52853195-52853016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 176

               
               
               Conread position:81-355
               
               
               Cow position:chr5:16937805-16938093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):6, 221

               
               
               Conread position:82-230
               
               
               Cow position:chr5:57101570-57101720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 86

               
               
               Conread position:82-232
               
               
               Cow position:chr5:44446648-44446805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:82-240
               
               
               Cow position:chr5:30562155-30561984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-252
               
               
               Cow position:chr5:22242547-22242725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 155

               
               
               Conread position:83-212
               
               
               Cow position:chr5:56563974-56563834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-219
               
               
               Cow position:chr5:25450170-25450027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-227
               
               
               Cow position:chr5:56643294-56643132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr5:8136685-8136533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:83-230
               
               
               Cow position:chr5:12478747-12478896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:83-231
               
               
               Cow position:chr5:33513511-33513665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr5:7558566-7558711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr5:15364096-15363939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr5:26548917-26549083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr5:30638378-30638534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):135, 29

               
               
               Conread position:83-248
               
               
               Cow position:chr5:54127513-54127333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:83-248
               
               
               Cow position:chr5:57062302-57062486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:83-250
               
               
               Cow position:chr5:34625174-34625002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-253
               
               
               Cow position:chr5:22102779-22102595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 48

               
               
               Conread position:83-253
               
               
               Cow position:chr5:58487599-58487416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 152

               
               
               Conread position:83-273
               
               
               Cow position:chr5:40102522-40102723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-283
               
               
               Cow position:chr5:55783735-55783957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-326
               
               
               Cow position:chr5:29515299-29515553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:83-348
               
               
               Cow position:chr5:18695362-18695098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:83-350
               
               
               Cow position:chr5:26262459-26262754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):39, 265

               
               
               Conread position:83-352
               
               
               Cow position:chr5:23529076-23529363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):76, 54

               
               
               Conread position:83-352
               
               
               Cow position:chr5:57767762-57768065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:83-353
               
               
               Cow position:chr5:61049560-61049280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 178

               
               
               Conread position:83-354
               
               
               Cow position:chr5:16025257-16025542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:83-354
               
               
               Cow position:chr5:69047160-69047447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:83-355
               
               
               Cow position:chr5:18289344-18289044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr5:28224668-28224368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:84-263
               
               
               Cow position:chr5:70591767-70591584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):55, 155

               
               
               Conread position:84-355
               
               
               Cow position:chr5:3772067-3771762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:84-355
               
               
               Cow position:chr5:72903015-72903316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:85-235
               
               
               Cow position:chr5:29599328-29599489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:85-252
               
               
               Cow position:chr5:44847803-44847982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:85-351
               
               
               Cow position:chr5:29060715-29061001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 264

               
               
               Conread position:86-235
               
               
               Cow position:chr5:50101155-50101319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:86-240
               
               
               Cow position:chr5:48919021-48918861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 128

               
               
               Conread position:86-247
               
               
               Cow position:chr5:6528887-6528729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):31, 67

               
               
               Conread position:86-247
               
               
               Cow position:chr5:36823092-36822929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 58

               
               
               Conread position:86-336
               
               
               Cow position:chr5:4280667-4280381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-216
               
               
               Cow position:chr5:71387421-71387283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-230
               
               
               Cow position:chr5:60523949-60523794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-231
               
               
               Cow position:chr5:22186628-22186479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:87-248
               
               
               Cow position:chr5:4267882-4267715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:87-345
               
               
               Cow position:chr5:30805371-30805092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:87-354
               
               
               Cow position:chr5:30487449-30487152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:87-355
               
               
               Cow position:chr5:41885136-41884850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:87-355
               
               
               Cow position:chr5:72564962-72564676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):150, 28

               
               
               Conread position:88-250
               
               
               Cow position:chr5:44734506-44734682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 169

               
               
               Conread position:89-353
               
               
               Cow position:chr5:55177100-55176806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):33, 139

               
               
               Conread position:92-353
               
               
               Cow position:chr5:47696243-47696526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):30, 231

               
               
               Conread position:93-248
               
               
               Cow position:chr5:51233808-51233974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 161

               
               
               Conread position:94-230
               
               
               Cow position:chr5:42753111-42752967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:94-253
               
               
               Cow position:chr5:48867255-48867424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):21, 159

               
               
               Conread position:97-247
               
               
               Cow position:chr5:38040356-38040522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:98-355
               
               
               Cow position:chr5:44796543-44796817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:99-230
               
               
               Cow position:chr5:69427251-69427391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:102-232
               
               
               Cow position:chr5:51125811-51125949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:102-355
               
               
               Cow position:chr5:28324522-28324268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):71, 17

               
               
               Conread position:103-355
               
               
               Cow position:chr5:69731690-69731421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 227

               
               
               Conread position:113-245
               
               
               Cow position:chr5:4956432-4956565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:113-355
               
               
               Cow position:chr5:4709976-4710231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:114-227
               
               
               Cow position:chr5:65050030-65050146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:115-354
               
               
               Cow position:chr5:54311512-54311250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):118, 23

               
               
               Conread position:121-276
               
               
               Cow position:chr5:29979781-29979940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:130-355
               
               
               Cow position:chr5:43737802-43738040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:137-229
               
               
               Cow position:chr5:26894564-26894656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:78
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-252
               
               
               Cow position:chr5:49821582-49821467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:137-272
               
               
               Cow position:chr5:63059216-63059078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:137-276
               
               
               Cow position:chr5:53779310-53779171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):100, 114

               
               
               Conread position:137-352
               
               
               Cow position:chr5:65776229-65776465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr5:12866673-12866905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:137-355
               
               
               Cow position:chr5:26476863-26477098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:140-247
               
               
               Cow position:chr5:20882472-20882578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:141-352
               
               
               Cow position:chr5:47888583-47888792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):146, 12

               
               
               Conread position:144-231
               
               
               Cow position:chr5:53980606-53980693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr5:62011831-62011744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-238
               
               
               Cow position:chr5:35246962-35247056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:79
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-246
               
               
               Cow position:chr5:19052644-19052746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr5:35513363-35513260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr5:58555285-58555182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-250
               
               
               Cow position:chr5:36868883-36868780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:144-337
               
               
               Cow position:chr5:11769418-11769200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:144-339
               
               
               Cow position:chr5:41981516-41981300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):89, 213

               
               
               Conread position:144-352
               
               
               Cow position:chr5:32975412-32975634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr5:18574322-18574091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):16, 210

               
               
               Conread position:144-353
               
               
               Cow position:chr5:58519268-58519483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 166

               
               
               Conread position:144-354
               
               
               Cow position:chr5:16206007-16206240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr5:17999348-17999577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr5:49685129-49685355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 25

               
               
               Conread position:144-354
               
               
               Cow position:chr5:54086686-54086458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr5:54750955-54750752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):97, 122

               
               
               Conread position:144-355
               
               
               Cow position:chr5:2309410-2309642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:144-355
               
               
               Cow position:chr5:4031838-4032078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr5:6503733-6503963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 202

               
               
               Conread position:144-355
               
               
               Cow position:chr5:19294378-19294575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:144-355
               
               
               Cow position:chr5:23528366-23528577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):132, 101

               
               
               Conread position:144-355
               
               
               Cow position:chr5:25035110-25035329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr5:34301064-34300830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr5:42064353-42064117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr5:53710541-53710776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr5:57526781-57527004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):89, 55

               
               
               Conread position:145-352
               
               
               Cow position:chr5:16939447-16939664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:145-352
               
               
               Cow position:chr5:37757691-37757909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 58

               
               
               Conread position:145-355
               
               
               Cow position:chr5:51053502-51053734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):24, 29

               
               
               Conread position:145-355
               
               
               Cow position:chr5:64181441-64181658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:146-344
               
               
               Cow position:chr5:57994733-57994939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:146-355
               
               
               Cow position:chr5:15479271-15479040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):86, 39

               
               
               Conread position:148-240
               
               
               Cow position:chr5:17644484-17644576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-238
               
               
               Cow position:chr5:54154060-54154149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:79
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):87, 73

               
               
               Conread position:149-245
               
               
               Cow position:chr5:4336435-4336339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-252
               
               
               Cow position:chr5:29771671-29771567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:149-352
               
               
               Cow position:chr5:62985655-62985445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 104

               
               
               Conread position:149-353
               
               
               Cow position:chr5:46103820-46104024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:149-354
               
               
               Cow position:chr5:47323605-47323380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr5:458631-458406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):84, 64

               
               
               Conread position:149-355
               
               
               Cow position:chr5:3639354-3639572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):79, 50

               
               
               Conread position:149-355
               
               
               Cow position:chr5:21039841-21040059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):81, 10

               
               
               Conread position:149-355
               
               
               Cow position:chr5:44053911-44054121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:149-355
               
               
               Cow position:chr5:44993906-44994124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):88, 176

               
               
               Conread position:149-355
               
               
               Cow position:chr5:54767766-54767995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:150-347
               
               
               Cow position:chr5:28456281-28456482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 48

               
               
               Conread position:150-347
               
               
               Cow position:chr5:28459582-28459783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 48

               
               
               Conread position:150-355
               
               
               Cow position:chr5:58144476-58144687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:152-247
               
               
               Cow position:chr5:38418656-38418563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:152-247
               
               
               Cow position:chr5:52723713-52723618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-354
               
               
               Cow position:chr5:43992464-43992237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:152-355
               
               
               Cow position:chr5:42777889-42777678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):81, 133

               
               
               Conread position:153-285
               
               
               Cow position:chr5:2851729-2851586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:153-352
               
               
               Cow position:chr5:35145466-35145266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 8

               
               
               Conread position:153-353
               
               
               Cow position:chr5:60747142-60747362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:153-355
               
               
               Cow position:chr5:1165304-1165088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:153-355
               
               
               Cow position:chr5:39258644-39258436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 161

               
               
               Conread position:154-341
               
               
               Cow position:chr5:63234691-63234898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:155-334
               
               
               Cow position:chr5:28718987-28718805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:155-353
               
               
               Cow position:chr5:67932335-67932548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 161

               
               
               Conread position:155-355
               
               
               Cow position:chr5:29828183-29827963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:156-353
               
               
               Cow position:chr5:65932807-65933012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):82, 130

               
               
               Conread position:156-355
               
               
               Cow position:chr5:51935325-51935106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 59

               
               
               Conread position:157-353
               
               
               Cow position:chr5:52000353-52000138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 52

               
               
               Conread position:157-353
               
               
               Cow position:chr5:60715233-60715442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:162-355
               
               
               Cow position:chr5:21964399-21964201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):92, 57

               
               
               Conread position:162-355
               
               
               Cow position:chr5:56518092-56518296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:165-355
               
               
               Cow position:chr5:42744907-42744702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:171-355
               
               
               Cow position:chr5:32696702-32696907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 38

               
               
               Conread position:174-354
               
               
               Cow position:chr5:61840310-61840107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:184-355
               
               
               Cow position:chr5:57271188-57271351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):70, 16

               
               
               Conread position:215-355
               
               
               Cow position:chr5:21944461-21944311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 5

               
               
               Conread position:226-353
               
               
               Cow position:chr5:72286864-72286997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:229-351
               
               
               Cow position:chr5:40039720-40039852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:230-353
               
               
               Cow position:chr5:33552376-33552494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:233-355
               
               
               Cow position:chr5:54404844-54404977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:233-355
               
               
               Cow position:chr5:57327836-57327711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:234-353
               
               
               Cow position:chr5:35235666-35235792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):20, 114

               
               
               Conread position:240-350
               
               
               Cow position:chr5:17644617-17644736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:242-355
               
               
               Cow position:chr5:45037049-45036936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:71-349
               
               
               Cow position:chr6:32126303-32125998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):51, 149

               
               
               Conread position:71-355
               
               
               Cow position:chr6:17068404-17068721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:72-355
               
               
               Cow position:chr6:13367534-13367219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 283

               
               
               Conread position:73-230
               
               
               Cow position:chr6:51933788-51933627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 64

               
               
               Conread position:73-250
               
               
               Cow position:chr6:15058623-15058433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:73-273
               
               
               Cow position:chr6:19225143-19225357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):45, 108

               
               
               Conread position:73-355
               
               
               Cow position:chr6:60819764-60819444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:74-235
               
               
               Cow position:chr6:30024125-30023956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:74-253
               
               
               Cow position:chr6:62056859-62056668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):48, 181

               
               
               Conread position:74-349
               
               
               Cow position:chr6:9219511-9219207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:74-352
               
               
               Cow position:chr6:31846995-31847289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 165

               
               
               Conread position:74-352
               
               
               Cow position:chr6:50984467-50984157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:74-354
               
               
               Cow position:chr6:16287819-16288123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:75-231
               
               
               Cow position:chr6:35984887-35985062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:75-236
               
               
               Cow position:chr6:23696241-23696070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:76-253
               
               
               Cow position:chr6:47575138-47574960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):18, 168

               
               
               Conread position:76-349
               
               
               Cow position:chr6:16700501-16700199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):11, 94

               
               
               Conread position:76-352
               
               
               Cow position:chr6:34475312-34475620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 256

               
               
               Conread position:76-355
               
               
               Cow position:chr6:34251050-34251360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):6, 152

               
               
               Conread position:79-327
               
               
               Cow position:chr6:61883930-61884206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 106

               
               
               Conread position:79-353
               
               
               Cow position:chr6:33206972-33206671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:81-240
               
               
               Cow position:chr6:62437658-62437480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr6:8688609-8688788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 176

               
               
               Conread position:81-325
               
               
               Cow position:chr6:7801159-7801436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 42

               
               
               Conread position:81-327
               
               
               Cow position:chr6:47959046-47958768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:81-342
               
               
               Cow position:chr6:51529947-51530245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:81-351
               
               
               Cow position:chr6:19402086-19401789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):41, 133

               
               
               Conread position:81-355
               
               
               Cow position:chr6:37395160-37395479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 317

               
               
               Conread position:82-232
               
               
               Cow position:chr6:15172796-15172642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 77

               
               
               Conread position:82-240
               
               
               Cow position:chr6:48278655-48278823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:82-248
               
               
               Cow position:chr6:16091137-16090962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:82-349
               
               
               Cow position:chr6:24468159-24468457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:82-354
               
               
               Cow position:chr6:18954852-18955136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):100, 69

               
               
               Conread position:82-355
               
               
               Cow position:chr6:29210717-29210425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:82-355
               
               
               Cow position:chr6:46558294-46557982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):40, 253

               
               
               Conread position:83-220
               
               
               Cow position:chr6:12099451-12099601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-226
               
               
               Cow position:chr6:41226608-41226753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-229
               
               
               Cow position:chr6:34076402-34076238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr6:34463351-34463512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr6:1475576-1475420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr6:22876689-22876856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr6:8966327-8966168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-238
               
               
               Cow position:chr6:66947581-66947754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr6:16627968-16627800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr6:44543908-44544083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-247
               
               
               Cow position:chr6:26408263-26408445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 178

               
               
               Conread position:83-248
               
               
               Cow position:chr6:45920981-45921155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 169

               
               
               Conread position:83-248
               
               
               Cow position:chr6:50883440-50883617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:83-248
               
               
               Cow position:chr6:53546268-53546094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 169

               
               
               Conread position:83-248
               
               
               Cow position:chr6:62079157-62078981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 173

               
               
               Conread position:83-250
               
               
               Cow position:chr6:53024572-53024747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:83-252
               
               
               Cow position:chr6:19259119-19259287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):44, 54

               
               
               Conread position:83-253
               
               
               Cow position:chr6:8468898-8468719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 171

               
               
               Conread position:83-253
               
               
               Cow position:chr6:23938290-23938114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 166

               
               
               Conread position:83-262
               
               
               Cow position:chr6:21175573-21175382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 159

               
               
               Conread position:83-282
               
               
               Cow position:chr6:62539369-62539579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):39, 128

               
               
               Conread position:83-296
               
               
               Cow position:chr6:1103506-1103750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:83-308
               
               
               Cow position:chr6:47884806-47885047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-328
               
               
               Cow position:chr6:55417294-55417572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-347
               
               
               Cow position:chr6:77698-77973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:83-351
               
               
               Cow position:chr6:57545990-57546288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-351
               
               
               Cow position:chr6:62370948-62371243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-352
               
               
               Cow position:chr6:33302635-33302342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 219

               
               
               Conread position:83-352
               
               
               Cow position:chr6:35726329-35726027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):39, 235

               
               
               Conread position:83-352
               
               
               Cow position:chr6:53138699-53138990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):39, 133

               
               
               Conread position:83-353
               
               
               Cow position:chr6:12501068-12500792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:83-353
               
               
               Cow position:chr6:65264312-65264608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-354
               
               
               Cow position:chr6:5095303-5095618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr6:6067474-6067763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr6:10613069-10612787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):39, 256

               
               
               Conread position:83-355
               
               
               Cow position:chr6:15300601-15300890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:83-355
               
               
               Cow position:chr6:18988430-18988141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:83-355
               
               
               Cow position:chr6:40032418-40032121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:83-355
               
               
               Cow position:chr6:59015340-59015629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:83-355
               
               
               Cow position:chr6:67187917-67187612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 203

               
               
               Conread position:84-353
               
               
               Cow position:chr6:54490508-54490805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:85-230
               
               
               Cow position:chr6:30825540-30825693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 18

               
               
               Conread position:85-238
               
               
               Cow position:chr6:59265476-59265633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:85-247
               
               
               Cow position:chr6:54127584-54127753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 114

               
               
               Conread position:87-230
               
               
               Cow position:chr6:4756039-4755890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:87-240
               
               
               Cow position:chr6:41655820-41655976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:87-245
               
               
               Cow position:chr6:48436065-48435890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:87-269
               
               
               Cow position:chr6:6117413-6117606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 144

               
               
               Conread position:87-314
               
               
               Cow position:chr6:23298525-23298292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:87-353
               
               
               Cow position:chr6:23401760-23402060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 152

               
               
               Conread position:87-353
               
               
               Cow position:chr6:64432168-64431866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):35, 296

               
               
               Conread position:87-355
               
               
               Cow position:chr6:37149417-37149116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:87-355
               
               
               Cow position:chr6:58370982-58370682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:88-355
               
               
               Cow position:chr6:34195928-34196222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:88-355
               
               
               Cow position:chr6:38771506-38771214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:93-327
               
               
               Cow position:chr6:7119401-7119664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:93-355
               
               
               Cow position:chr6:60740239-60739944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:94-298
               
               
               Cow position:chr6:27219394-27219163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:96-330
               
               
               Cow position:chr6:2585167-2584894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:96-353
               
               
               Cow position:chr6:2623984-2623712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:103-337
               
               
               Cow position:chr6:16352153-16352401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:103-349
               
               
               Cow position:chr6:9008407-9008677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:105-355
               
               
               Cow position:chr6:57404944-57405195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:112-215
               
               
               Cow position:chr6:13326980-13327084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:122-250
               
               
               Cow position:chr6:21590900-21590764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 129

               
               
               Conread position:123-248
               
               
               Cow position:chr6:19508004-19508129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 120

               
               
               Conread position:127-354
               
               
               Cow position:chr6:16191849-16191603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:134-352
               
               
               Cow position:chr6:58608272-58608508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr6:35702176-35702288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:137-253
               
               
               Cow position:chr6:16764477-16764592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-346
               
               
               Cow position:chr6:19519542-19519338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):147, 37

               
               
               Conread position:137-353
               
               
               Cow position:chr6:10039892-10039654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):100, 154

               
               
               Conread position:137-353
               
               
               Cow position:chr6:68049587-68049367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 169

               
               
               Conread position:137-355
               
               
               Cow position:chr6:10399746-10399972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):102, 52

               
               
               Conread position:143-351
               
               
               Cow position:chr6:11830350-11830127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 21

               
               
               Conread position:143-355
               
               
               Cow position:chr6:35181094-35181329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 198

               
               
               Conread position:144-227
               
               
               Cow position:chr6:14152729-14152812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:75
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-228
               
               
               Cow position:chr6:54840346-54840430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:77
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr6:18440316-18440403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:78
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr6:21467106-21467193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr6:69153571-69153475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:80
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-242
               
               
               Cow position:chr6:16411772-16411673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:144-243
               
               
               Cow position:chr6:50882743-50882643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr6:29852904-29853008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-252
               
               
               Cow position:chr6:58076555-58076446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-273
               
               
               Cow position:chr6:31865254-31865115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-336
               
               
               Cow position:chr6:56986489-56986699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-352
               
               
               Cow position:chr6:43134777-43135005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):85, 209

               
               
               Conread position:144-353
               
               
               Cow position:chr6:3952680-3952448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr6:19045784-19045556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr6:10176140-10176368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr6:14914074-14914313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 122

               
               
               Conread position:144-355
               
               
               Cow position:chr6:33450814-33451014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 27

               
               
               Conread position:144-355
               
               
               Cow position:chr6:38441334-38441104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr6:67574549-67574334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):89, 76

               
               
               Conread position:145-248
               
               
               Cow position:chr6:37603727-37603623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr6:15937694-15937923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):88, 173

               
               
               Conread position:145-355
               
               
               Cow position:chr6:61644698-61644904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:148-250
               
               
               Cow position:chr6:47540979-47540878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:148-348
               
               
               Cow position:chr6:10224349-10224141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 157

               
               
               Conread position:148-353
               
               
               Cow position:chr6:12845537-12845315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):20, 66

               
               
               Conread position:148-353
               
               
               Cow position:chr6:42961205-42961430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 192

               
               
               Conread position:148-355
               
               
               Cow position:chr6:60442565-60442347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):79, 49

               
               
               Conread position:149-240
               
               
               Cow position:chr6:35654393-35654484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:78
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:149-347
               
               
               Cow position:chr6:35896196-35896404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):84, 161

               
               
               Conread position:149-352
               
               
               Cow position:chr6:10225500-10225708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:149-352
               
               
               Cow position:chr6:21111108-21110896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:149-352
               
               
               Cow position:chr6:66531667-66531890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:150-349
               
               
               Cow position:chr6:28178799-28179012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr6:8804399-8804602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:150-355
               
               
               Cow position:chr6:19446406-19446187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):65, 191

               
               
               Conread position:150-355
               
               
               Cow position:chr6:54867673-54867442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:151-251
               
               
               Cow position:chr6:30895837-30895938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:152-355
               
               
               Cow position:chr6:28483170-28482948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:153-349
               
               
               Cow position:chr6:29248630-29248425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:154-352
               
               
               Cow position:chr6:8600151-8599936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):70, 151

               
               
               Conread position:154-353
               
               
               Cow position:chr6:23353688-23353483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 60

               
               
               Conread position:155-355
               
               
               Cow position:chr6:60667561-60667348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:156-350
               
               
               Cow position:chr6:15922882-15923066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:156-353
               
               
               Cow position:chr6:32268738-32268946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):78, 133

               
               
               Conread position:156-355
               
               
               Cow position:chr6:30786036-30786226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:161-349
               
               
               Cow position:chr6:14838899-14839089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):93, 71

               
               
               Conread position:161-353
               
               
               Cow position:chr6:242936-242740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 121

               
               
               Conread position:162-355
               
               
               Cow position:chr6:4864403-4864620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:173-355
               
               
               Cow position:chr6:49002607-49002805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:181-353
               
               
               Cow position:chr6:28318522-28318334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:202-353
               
               
               Cow position:chr6:49155191-49155337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:226-355
               
               
               Cow position:chr6:44984395-44984258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:229-355
               
               
               Cow position:chr6:50445704-50445832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr6:16764599-16764724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:232-350
               
               
               Cow position:chr6:57299074-57298951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:232-354
               
               
               Cow position:chr6:54364939-54365074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr6:377182-377058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:232-355
               
               
               Cow position:chr6:6673161-6673032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr6:16411250-16411119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr6:34076088-34075955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr6:38234018-38233886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr6:62924939-62925069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:234-352
               
               
               Cow position:chr6:28283918-28283797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:235-355
               
               
               Cow position:chr6:48169994-48169874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:241-352
               
               
               Cow position:chr6:45160248-45160363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:245-355
               
               
               Cow position:chr6:18968734-18968852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:248-353
               
               
               Cow position:chr6:54294145-54294038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:271-355
               
               
               Cow position:chr6:58076240-58076158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:77
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:272-355
               
               
               Cow position:chr6:20230817-20230900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-248
               
               
               Cow position:chr7:10414886-10415073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 182

               
               
               Conread position:71-251
               
               
               Cow position:chr7:10559727-10559924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 189

               
               
               Conread position:73-231
               
               
               Cow position:chr7:41122018-41122190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:73-244
               
               
               Cow position:chr7:20411271-20411461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:73-248
               
               
               Cow position:chr7:12488675-12488492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:74-238
               
               
               Cow position:chr7:38357399-38357570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:74-353
               
               
               Cow position:chr7:25263620-25263307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:74-355
               
               
               Cow position:chr7:35286396-35286707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 211

               
               
               Conread position:75-230
               
               
               Cow position:chr7:40567305-40567149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:75-251
               
               
               Cow position:chr7:30277566-30277389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:75-331
               
               
               Cow position:chr7:38360986-38361277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:75-355
               
               
               Cow position:chr7:10448568-10448850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 199

               
               
               Conread position:75-355
               
               
               Cow position:chr7:30017273-30017586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:76-248
               
               
               Cow position:chr7:35779985-35779801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:76-351
               
               
               Cow position:chr7:31497948-31497656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:76-352
               
               
               Cow position:chr7:8736048-8735763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):156, 65

               
               
               Conread position:76-355
               
               
               Cow position:chr7:53763343-53763654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:77-225
               
               
               Cow position:chr7:63101654-63101500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:77-231
               
               
               Cow position:chr7:29345668-29345825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 130

               
               
               Conread position:77-254
               
               
               Cow position:chr7:57506536-57506726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 178

               
               
               Conread position:78-227
               
               
               Cow position:chr7:23552719-23552883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:78-231
               
               
               Cow position:chr7:32324441-32324278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:78-243
               
               
               Cow position:chr7:11511965-11511789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:78-354
               
               
               Cow position:chr7:14174197-14174483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:78-355
               
               
               Cow position:chr7:24220897-24220601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:78-355
               
               
               Cow position:chr7:28337479-28337181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:81-232
               
               
               Cow position:chr7:29479764-29479603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:81-240
               
               
               Cow position:chr7:206658-206493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 140

               
               
               Conread position:81-240
               
               
               Cow position:chr7:28441418-28441246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-240
               
               
               Cow position:chr7:31049354-31049524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr7:51685258-51685075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):38, 178

               
               
               Conread position:81-278
               
               
               Cow position:chr7:34216446-34216233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):30, 95

               
               
               Conread position:81-287
               
               
               Cow position:chr7:32436573-32436777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:81-301
               
               
               Cow position:chr7:55315961-55316214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-353
               
               
               Cow position:chr7:39444378-39444668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 248

               
               
               Conread position:81-354
               
               
               Cow position:chr7:60547426-60547736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 129

               
               
               Conread position:81-355
               
               
               Cow position:chr7:14519798-14520110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:81-355
               
               
               Cow position:chr7:36248335-36248030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 282

               
               
               Conread position:82-218
               
               
               Cow position:chr7:49222211-49222352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:82-240
               
               
               Cow position:chr7:35295917-35296073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:82-302
               
               
               Cow position:chr7:39947005-39947263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:82-355
               
               
               Cow position:chr7:60870168-60869878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:83-210
               
               
               Cow position:chr7:34224377-34224243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-214
               
               
               Cow position:chr7:19652197-19652339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:83-225
               
               
               Cow position:chr7:51621632-51621481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-227
               
               
               Cow position:chr7:47523453-47523298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:83-230
               
               
               Cow position:chr7:9858593-9858433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr7:28428511-28428357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr7:43450784-43450619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:83-230
               
               
               Cow position:chr7:49068597-49068763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr7:30012070-30011909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr7:32549167-32549334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-232
               
               
               Cow position:chr7:18016911-18016750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:83-238
               
               
               Cow position:chr7:10403636-10403790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:83-240
               
               
               Cow position:chr7:63300440-63300265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:83-244
               
               
               Cow position:chr7:37698049-37697869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 171

               
               
               Conread position:83-248
               
               
               Cow position:chr7:17000970-17000787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):39, 171

               
               
               Conread position:83-248
               
               
               Cow position:chr7:27290255-27290438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):34, 169

               
               
               Conread position:83-248
               
               
               Cow position:chr7:40688184-40688003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 178

               
               
               Conread position:83-248
               
               
               Cow position:chr7:59076072-59075911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:83-252
               
               
               Cow position:chr7:41729067-41729249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:83-252
               
               
               Cow position:chr7:48020666-48020481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-252
               
               
               Cow position:chr7:53996538-53996357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:83-253
               
               
               Cow position:chr7:30818682-30818521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:83-253
               
               
               Cow position:chr7:68240699-68240520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:83-263
               
               
               Cow position:chr7:44942797-44942600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-270
               
               
               Cow position:chr7:40322849-40322650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-273
               
               
               Cow position:chr7:55498848-55499051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 166

               
               
               Conread position:83-286
               
               
               Cow position:chr7:37004025-37003823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):143, 32

               
               
               Conread position:83-317
               
               
               Cow position:chr7:8089403-8089129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:83-347
               
               
               Cow position:chr7:40894766-40894479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:83-351
               
               
               Cow position:chr7:18247596-18247871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:83-351
               
               
               Cow position:chr7:32807688-32807398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 271

               
               
               Conread position:83-351
               
               
               Cow position:chr7:58170965-58170674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-352
               
               
               Cow position:chr7:1376367-1376074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:83-352
               
               
               Cow position:chr7:27063016-27062710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 121

               
               
               Conread position:83-352
               
               
               Cow position:chr7:52378862-52378571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 116

               
               
               Conread position:83-353
               
               
               Cow position:chr7:14029547-14029266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):40, 220

               
               
               Conread position:83-353
               
               
               Cow position:chr7:25393540-25393221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:83-353
               
               
               Cow position:chr7:34412063-34412341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):164, 32

               
               
               Conread position:83-353
               
               
               Cow position:chr7:44589650-44589918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:83-354
               
               
               Cow position:chr7:30931742-30932044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:83-355
               
               
               Cow position:chr7:2897385-2897093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:83-355
               
               
               Cow position:chr7:9449428-9449720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr7:16022533-16022228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):39, 291

               
               
               Conread position:83-355
               
               
               Cow position:chr7:23251343-23251632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:83-355
               
               
               Cow position:chr7:29474898-29474626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):39, 87

               
               
               Conread position:83-355
               
               
               Cow position:chr7:37372222-37371934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 87

               
               
               Conread position:83-355
               
               
               Cow position:chr7:47547646-47547337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:83-355
               
               
               Cow position:chr7:59688777-59688468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):35, 138

               
               
               Conread position:85-355
               
               
               Cow position:chr7:50075513-50075793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):37, 147

               
               
               Conread position:86-223
               
               
               Cow position:chr7:36787815-36787680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:86-347
               
               
               Cow position:chr7:39131266-39131552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 215

               
               
               Conread position:86-355
               
               
               Cow position:chr7:19466020-19466320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:86-355
               
               
               Cow position:chr7:25722434-25722731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):32, 244

               
               
               Conread position:87-230
               
               
               Cow position:chr7:14811905-14812052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:87-234
               
               
               Cow position:chr7:40344641-40344800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-238
               
               
               Cow position:chr7:48675619-48675772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:87-248
               
               
               Cow position:chr7:24022236-24022402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 161

               
               
               Conread position:87-253
               
               
               Cow position:chr7:29505349-29505171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 168

               
               
               Conread position:87-326
               
               
               Cow position:chr7:33386153-33385881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 232

               
               
               Conread position:87-338
               
               
               Cow position:chr7:15855106-15855371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:87-351
               
               
               Cow position:chr7:34214810-34214529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:87-351
               
               
               Cow position:chr7:53785752-53786024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 191

               
               
               Conread position:87-353
               
               
               Cow position:chr7:600552-600267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:87-353
               
               
               Cow position:chr7:20537592-20537295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:87-353
               
               
               Cow position:chr7:68315479-68315175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:87-354
               
               
               Cow position:chr7:4893086-4892798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 207

               
               
               Conread position:88-253
               
               
               Cow position:chr7:30154773-30154952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:88-353
               
               
               Cow position:chr7:45747639-45747912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):127, 60

               
               
               Conread position:92-232
               
               
               Cow position:chr7:34464586-34464434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:93-354
               
               
               Cow position:chr7:53382412-53382132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:94-230
               
               
               Cow position:chr7:11946110-11945961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:95-232
               
               
               Cow position:chr7:5724404-5724256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:95-254
               
               
               Cow position:chr7:12995891-12995729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:95-273
               
               
               Cow position:chr7:10886173-10885982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:95-355
               
               
               Cow position:chr7:3336332-3336621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:97-231
               
               
               Cow position:chr7:68773981-68773841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:98-304
               
               
               Cow position:chr7:50442687-50442887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:103-355
               
               
               Cow position:chr7:57258817-57259097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:109-354
               
               
               Cow position:chr7:27283870-27283614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):130, 10

               
               
               Conread position:111-355
               
               
               Cow position:chr7:5853546-5853289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):20, 83

               
               
               Conread position:113-355
               
               
               Cow position:chr7:9800550-9800284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:117-248
               
               
               Cow position:chr7:14486265-14486135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 5

               
               
               Conread position:121-230
               
               
               Cow position:chr7:43055400-43055508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:123-240
               
               
               Cow position:chr7:55060450-55060332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:125-229
               
               
               Cow position:chr7:40110743-40110849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr7:11015853-11015743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr7:11716176-11716066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):75, 83

               
               
               Conread position:137-327
               
               
               Cow position:chr7:37394469-37394269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:137-346
               
               
               Cow position:chr7:33720204-33719973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:137-354
               
               
               Cow position:chr7:23089976-23090198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:137-354
               
               
               Cow position:chr7:24461122-24460890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 189

               
               
               Conread position:137-355
               
               
               Cow position:chr7:65597454-65597670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 130

               
               
               Conread position:140-352
               
               
               Cow position:chr7:40189716-40189487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:143-355
               
               
               Cow position:chr7:52758633-52758406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:144-231
               
               
               Cow position:chr7:10385042-10384956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr7:40710292-40710205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-238
               
               
               Cow position:chr7:58615428-58615335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr7:11884117-11884223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr7:35754836-35754732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr7:5201513-5201616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr7:8376331-8376227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr7:19797765-19797869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr7:35019134-35019031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr7:60121716-60121614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr7:63085913-63085810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-286
               
               
               Cow position:chr7:11995025-11995171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:144-333
               
               
               Cow position:chr7:5885305-5885125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:144-344
               
               
               Cow position:chr7:68857424-68857647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-352
               
               
               Cow position:chr7:54479823-54479611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:144-353
               
               
               Cow position:chr7:38697006-38696781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:144-354
               
               
               Cow position:chr7:14938116-14938341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):84, 187

               
               
               Conread position:144-354
               
               
               Cow position:chr7:39518447-39518231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:144-355
               
               
               Cow position:chr7:1720804-1721035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 198

               
               
               Conread position:144-355
               
               
               Cow position:chr7:9137002-9136764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr7:9161511-9161737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):75, 148

               
               
               Conread position:144-355
               
               
               Cow position:chr7:18388235-18388468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr7:22357329-22357552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:144-355
               
               
               Cow position:chr7:23636866-23636637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:144-355
               
               
               Cow position:chr7:32710821-32711045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):89, 65

               
               
               Conread position:144-355
               
               
               Cow position:chr7:36774532-36774297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):75, 197

               
               
               Conread position:144-355
               
               
               Cow position:chr7:40308356-40308585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):80, 8

               
               
               Conread position:144-355
               
               
               Cow position:chr7:43184950-43184733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 152

               
               
               Conread position:144-355
               
               
               Cow position:chr7:44596538-44596769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr7:46823834-46823600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr7:52718475-52718704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 75

               
               
               Conread position:144-355
               
               
               Cow position:chr7:53606169-53606392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):87, 163

               
               
               Conread position:145-252
               
               
               Cow position:chr7:10795996-10795888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:145-327
               
               
               Cow position:chr7:39325889-39325693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr7:21239964-21240183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:146-230
               
               
               Cow position:chr7:37023090-37023006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:76
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-355
               
               
               Cow position:chr7:39162534-39162297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:147-231
               
               
               Cow position:chr7:68540439-68540523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:85
               
               
               Alignm identity:76
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:147-248
               
               
               Cow position:chr7:9068437-9068539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:148-355
               
               
               Cow position:chr7:12357939-12358153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):80, 175

               
               
               Conread position:149-347
               
               
               Cow position:chr7:28096029-28095815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:149-349
               
               
               Cow position:chr7:50858112-50857885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:149-353
               
               
               Cow position:chr7:25511965-25512190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):84, 134

               
               
               Conread position:149-354
               
               
               Cow position:chr7:42894608-42894377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr7:2816417-2816202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:149-355
               
               
               Cow position:chr7:14450484-14450271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:150-248
               
               
               Cow position:chr7:2894884-2894787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:150-353
               
               
               Cow position:chr7:25860048-25860260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):82, 170

               
               
               Conread position:150-353
               
               
               Cow position:chr7:30171959-30172154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):170, 92

               
               
               Conread position:150-355
               
               
               Cow position:chr7:44454122-44454348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr7:51019936-51019713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 179

               
               
               Conread position:150-355
               
               
               Cow position:chr7:58923556-58923328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:151-307
               
               
               Cow position:chr7:14497738-14497567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:151-355
               
               
               Cow position:chr7:255662-255881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):75, 181

               
               
               Conread position:154-353
               
               
               Cow position:chr7:31881814-31881609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:154-355
               
               
               Cow position:chr7:19981692-19981914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:155-352
               
               
               Cow position:chr7:60960699-60960496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 173

               
               
               Conread position:155-354
               
               
               Cow position:chr7:12408088-12408304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:155-355
               
               
               Cow position:chr7:49648510-49648295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:156-355
               
               
               Cow position:chr7:65122484-65122273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:161-353
               
               
               Cow position:chr7:40952718-40952929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:162-355
               
               
               Cow position:chr7:22651684-22651890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 48

               
               
               Conread position:162-355
               
               
               Cow position:chr7:42244559-42244763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):71, 10

               
               
               Conread position:164-353
               
               
               Cow position:chr7:5212333-5212545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:166-355
               
               
               Cow position:chr7:63679214-63679008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 52

               
               
               Conread position:168-353
               
               
               Cow position:chr7:3311979-3311776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:173-353
               
               
               Cow position:chr7:3283494-3283296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:179-355
               
               
               Cow position:chr7:19267241-19267438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:189-343
               
               
               Cow position:chr7:63913765-63913928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 48

               
               
               Conread position:193-355
               
               
               Cow position:chr7:24932302-24932485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:226-353
               
               
               Cow position:chr7:27349171-27349296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 6

               
               
               Conread position:232-352
               
               
               Cow position:chr7:17757095-17756971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr7:18253562-18253432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr7:31882014-31881883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:234-354
               
               
               Cow position:chr7:41259385-41259509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:234-355
               
               
               Cow position:chr7:5300332-5300459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 114

               
               
               Conread position:234-355
               
               
               Cow position:chr7:48020479-48020351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:238-355
               
               
               Cow position:chr7:23615916-23616036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 21

               
               
               Conread position:240-353
               
               
               Cow position:chr7:43103387-43103509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr7:12201873-12201992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr7:40311293-40311410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:241-355
               
               
               Cow position:chr7:35652020-35652144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:277-355
               
               
               Cow position:chr7:40008829-40008751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:71
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-355
               
               
               Cow position:chr8:24512911-24513246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:71-252
               
               
               Cow position:chr8:54052519-54052332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:71-355
               
               
               Cow position:chr8:10297531-10297836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:72-247
               
               
               Cow position:chr8:11216637-11216828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:72-350
               
               
               Cow position:chr8:53552891-53552582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:72-352
               
               
               Cow position:chr8:52657381-52657075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:73-230
               
               
               Cow position:chr8:23370100-23370263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:73-230
               
               
               Cow position:chr8:53587103-53587273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:73-232
               
               
               Cow position:chr8:42332709-42332555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:74-349
               
               
               Cow position:chr8:53429980-53429681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 50

               
               
               Conread position:74-354
               
               
               Cow position:chr8:41721972-41722282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 267

               
               
               Conread position:75-215
               
               
               Cow position:chr8:23596552-23596701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:75-222
               
               
               Cow position:chr8:4557699-4557852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):39, 60

               
               
               Conread position:75-248
               
               
               Cow position:chr8:55454880-55454695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:75-253
               
               
               Cow position:chr8:50282097-50281899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:75-286
               
               
               Cow position:chr8:11124347-11124587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:75-352
               
               
               Cow position:chr8:28228457-28228152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):47, 225

               
               
               Conread position:76-227
               
               
               Cow position:chr8:31902472-31902636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:76-355
               
               
               Cow position:chr8:1024177-1023864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:76-355
               
               
               Cow position:chr8:16144350-16144027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:77-247
               
               
               Cow position:chr8:13732408-13732579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 49

               
               
               Conread position:77-252
               
               
               Cow position:chr8:28509240-28509427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 177

               
               
               Conread position:77-355
               
               
               Cow position:chr8:20107578-20107885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:78-231
               
               
               Cow position:chr8:32458003-32457834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 132

               
               
               Conread position:78-248
               
               
               Cow position:chr8:19223446-19223629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 178

               
               
               Conread position:78-248
               
               
               Cow position:chr8:55725549-55725738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 162

               
               
               Conread position:78-346
               
               
               Cow position:chr8:37635781-37636085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:78-349
               
               
               Cow position:chr8:27138583-27138888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 260

               
               
               Conread position:78-351
               
               
               Cow position:chr8:1012178-1011883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:78-354
               
               
               Cow position:chr8:10336828-10337124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):49, 261

               
               
               Conread position:78-355
               
               
               Cow position:chr8:34259368-34259060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:81-235
               
               
               Cow position:chr8:58028203-58028368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:81-253
               
               
               Cow position:chr8:34035885-34035702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 132

               
               
               Conread position:81-353
               
               
               Cow position:chr8:1188125-1187820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):41, 130

               
               
               Conread position:81-355
               
               
               Cow position:chr8:16061285-16060985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 249

               
               
               Conread position:82-250
               
               
               Cow position:chr8:53964258-53964429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:82-352
               
               
               Cow position:chr8:26626082-26625774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-355
               
               
               Cow position:chr8:16938270-16938558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 75

               
               
               Conread position:83-209
               
               
               Cow position:chr8:9646742-9646610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-223
               
               
               Cow position:chr8:33664108-33663957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-226
               
               
               Cow position:chr8:31767828-31767984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr8:10053858-10053999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:83-230
               
               
               Cow position:chr8:24406432-24406594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 118

               
               
               Conread position:83-230
               
               
               Cow position:chr8:55348529-55348381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:83-231
               
               
               Cow position:chr8:5477644-5477805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr8:21826531-21826689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):39, 137

               
               
               Conread position:83-231
               
               
               Cow position:chr8:24419076-24419231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr8:38993940-38993779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):39, 134

               
               
               Conread position:83-232
               
               
               Cow position:chr8:54391096-54391252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-235
               
               
               Cow position:chr8:26315294-26315451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:83-240
               
               
               Cow position:chr8:27033978-27033808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 39

               
               
               Conread position:83-248
               
               
               Cow position:chr8:11594229-11594065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:83-248
               
               
               Cow position:chr8:45149593-45149761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 156

               
               
               Conread position:83-248
               
               
               Cow position:chr8:48086414-48086576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:83-248
               
               
               Cow position:chr8:53383605-53383434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:83-249
               
               
               Cow position:chr8:21776121-21775948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:83-249
               
               
               Cow position:chr8:60339718-60339890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 166

               
               
               Conread position:83-251
               
               
               Cow position:chr8:25649481-25649654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 167

               
               
               Conread position:83-255
               
               
               Cow position:chr8:54306563-54306370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-267
               
               
               Cow position:chr8:28506746-28506938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:83-272
               
               
               Cow position:chr8:3182649-3182453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):62, 38

               
               
               Conread position:83-272
               
               
               Cow position:chr8:35497476-35497691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:83-273
               
               
               Cow position:chr8:51511647-51511863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-332
               
               
               Cow position:chr8:4992760-4992481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):39, 208

               
               
               Conread position:83-347
               
               
               Cow position:chr8:38711797-38711507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-349
               
               
               Cow position:chr8:18870094-18869795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-351
               
               
               Cow position:chr8:27662068-27661786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):39, 190

               
               
               Conread position:83-353
               
               
               Cow position:chr8:29026449-29026733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):72, 39

               
               
               Conread position:83-353
               
               
               Cow position:chr8:33125701-33125406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 271

               
               
               Conread position:83-353
               
               
               Cow position:chr8:37123157-37122875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):77, 54

               
               
               Conread position:83-353
               
               
               Cow position:chr8:54032084-54031775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:83-353
               
               
               Cow position:chr8:56886502-56886224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 40

               
               
               Conread position:83-353
               
               
               Cow position:chr8:57219002-57218708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):39, 264

               
               
               Conread position:83-355
               
               
               Cow position:chr8:4500698-4500390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr8:6232689-6232999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:83-355
               
               
               Cow position:chr8:25455597-25455307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):150, 50

               
               
               Conread position:83-355
               
               
               Cow position:chr8:34769708-34769403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):39, 221

               
               
               Conread position:83-355
               
               
               Cow position:chr8:37215638-37215341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 116

               
               
               Conread position:83-355
               
               
               Cow position:chr8:37571493-37571804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr8:45664946-45664673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 164

               
               
               Conread position:83-355
               
               
               Cow position:chr8:45879237-45878938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 213

               
               
               Conread position:83-355
               
               
               Cow position:chr8:45925819-45925520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 213

               
               
               Conread position:83-355
               
               
               Cow position:chr8:48512816-48513108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 279

               
               
               Conread position:83-355
               
               
               Cow position:chr8:51579441-51579170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):142, 52

               
               
               Conread position:84-232
               
               
               Cow position:chr8:55089648-55089804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:84-240
               
               
               Cow position:chr8:57389004-57388833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:84-327
               
               
               Cow position:chr8:48524759-48525001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):38, 162

               
               
               Conread position:85-235
               
               
               Cow position:chr8:5877847-5877685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:85-240
               
               
               Cow position:chr8:44568999-44568838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:85-355
               
               
               Cow position:chr8:17179833-17180126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:85-355
               
               
               Cow position:chr8:61128493-61128797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:86-355
               
               
               Cow position:chr8:935913-935607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-231
               
               
               Cow position:chr8:5476314-5476462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:87-248
               
               
               Cow position:chr8:33807521-33807687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:87-248
               
               
               Cow position:chr8:37443729-37443560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):35, 128

               
               
               Conread position:87-324
               
               
               Cow position:chr8:37709340-37709080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):31, 68

               
               
               Conread position:87-350
               
               
               Cow position:chr8:3445891-3446195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:87-354
               
               
               Cow position:chr8:47135817-47136109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:87-355
               
               
               Cow position:chr8:572956-573250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):35, 266

               
               
               Conread position:88-307
               
               
               Cow position:chr8:19860470-19860712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:89-248
               
               
               Cow position:chr8:38811505-38811332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:89-335
               
               
               Cow position:chr8:39845809-39845538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:89-354
               
               
               Cow position:chr8:642387-642676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 132

               
               
               Conread position:92-250
               
               
               Cow position:chr8:4820997-4821151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:95-268
               
               
               Cow position:chr8:27774082-27774264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 165

               
               
               Conread position:95-355
               
               
               Cow position:chr8:21212986-21212703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):7, 207

               
               
               Conread position:103-353
               
               
               Cow position:chr8:15390978-15391261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:103-353
               
               
               Cow position:chr8:37334333-37334073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 40

               
               
               Conread position:108-231
               
               
               Cow position:chr8:55214416-55214294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):17, 6

               
               
               Conread position:116-235
               
               
               Cow position:chr8:10846398-10846281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:118-251
               
               
               Cow position:chr8:36034807-36034945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:123-354
               
               
               Cow position:chr8:20157605-20157865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:126-253
               
               
               Cow position:chr8:28884988-28884862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:126-351
               
               
               Cow position:chr8:39144883-39144653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 9

               
               
               Conread position:130-227
               
               
               Cow position:chr8:45494244-45494147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:133-247
               
               
               Cow position:chr8:36647286-36647398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:133-355
               
               
               Cow position:chr8:9652814-9652575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:134-355
               
               
               Cow position:chr8:23585817-23586055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:137-230
               
               
               Cow position:chr8:46964875-46964782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-231
               
               
               Cow position:chr8:39968142-39968236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-247
               
               
               Cow position:chr8:26881688-26881797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-248
               
               
               Cow position:chr8:21600586-21600476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-271
               
               
               Cow position:chr8:36478428-36478566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):94, 49

               
               
               Conread position:137-351
               
               
               Cow position:chr8:20783124-20783361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-353
               
               
               Cow position:chr8:21858577-21858806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 167

               
               
               Conread position:137-354
               
               
               Cow position:chr8:53251564-53251779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):132, 16

               
               
               Conread position:137-355
               
               
               Cow position:chr8:11927268-11927050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):142, 105

               
               
               Conread position:138-248
               
               
               Cow position:chr8:54197740-54197849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:138-355
               
               
               Cow position:chr8:18207005-18207235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:139-231
               
               
               Cow position:chr8:8112875-8112784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:82
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:141-355
               
               
               Cow position:chr8:20339411-20339187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):92, 182

               
               
               Conread position:143-240
               
               
               Cow position:chr8:35816986-35817082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:144-231
               
               
               Cow position:chr8:20926498-20926585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:79
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-235
               
               
               Cow position:chr8:5546271-5546180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:78
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr8:36490002-36489906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr8:3762281-3762177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr8:49543015-49542912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr8:52968177-52968280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-250
               
               
               Cow position:chr8:21069842-21069948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 90

               
               
               Conread position:144-254
               
               
               Cow position:chr8:7661497-7661388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):93, 81

               
               
               Conread position:144-286
               
               
               Cow position:chr8:2968709-2968565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:144-326
               
               
               Cow position:chr8:29958531-29958330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:144-327
               
               
               Cow position:chr8:21911769-21911565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-330
               
               
               Cow position:chr8:45859941-45859732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-331
               
               
               Cow position:chr8:16505624-16505418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):89, 192

               
               
               Conread position:144-351
               
               
               Cow position:chr8:13321502-13321719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:144-351
               
               
               Cow position:chr8:46616520-46616316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:144-353
               
               
               Cow position:chr8:1114680-1114893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 145

               
               
               Conread position:144-354
               
               
               Cow position:chr8:37809526-37809725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):74, 90

               
               
               Conread position:144-354
               
               
               Cow position:chr8:43190916-43191124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:144-354
               
               
               Cow position:chr8:45127570-45127801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 180

               
               
               Conread position:144-354
               
               
               Cow position:chr8:50310718-50310954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-354
               
               
               Cow position:chr8:55096002-55095783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):68, 194

               
               
               Conread position:144-355
               
               
               Cow position:chr8:1297643-1297411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 213

               
               
               Conread position:144-355
               
               
               Cow position:chr8:4940186-4940409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:144-355
               
               
               Cow position:chr8:7149568-7149794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):98, 65

               
               
               Conread position:144-355
               
               
               Cow position:chr8:8097134-8097365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr8:8323737-8323971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr8:11277969-11278208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:144-355
               
               
               Cow position:chr8:15394729-15394962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:144-355
               
               
               Cow position:chr8:16296634-16296853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr8:20347455-20347653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:144-355
               
               
               Cow position:chr8:24871751-24871973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):93, 70

               
               
               Conread position:144-355
               
               
               Cow position:chr8:34478228-34478018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 73

               
               
               Conread position:144-355
               
               
               Cow position:chr8:36465311-36465106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:144-355
               
               
               Cow position:chr8:37882478-37882245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr8:49721249-49721040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 101

               
               
               Conread position:145-248
               
               
               Cow position:chr8:24363507-24363609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:145-249
               
               
               Cow position:chr8:10832302-10832406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:145-353
               
               
               Cow position:chr8:15426875-15426654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 20

               
               
               Conread position:145-354
               
               
               Cow position:chr8:43857927-43858153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr8:6681800-6682016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:146-355
               
               
               Cow position:chr8:30244716-30244933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:149-354
               
               
               Cow position:chr8:13723534-13723309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:150-353
               
               
               Cow position:chr8:56507184-56507387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 12

               
               
               Conread position:150-355
               
               
               Cow position:chr8:26404421-26404634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:150-355
               
               
               Cow position:chr8:47461986-47461768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):83, 142

               
               
               Conread position:151-352
               
               
               Cow position:chr8:11881448-11881235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:151-352
               
               
               Cow position:chr8:28378641-28378854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):81, 118

               
               
               Conread position:152-353
               
               
               Cow position:chr8:21077708-21077488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:153-352
               
               
               Cow position:chr8:6262701-6262894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:153-352
               
               
               Cow position:chr8:40579290-40579510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:153-353
               
               
               Cow position:chr8:40143728-40143952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:153-354
               
               
               Cow position:chr8:61067409-61067192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):84, 161

               
               
               Conread position:153-355
               
               
               Cow position:chr8:11078983-11078769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:154-355
               
               
               Cow position:chr8:20837242-20837024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:154-355
               
               
               Cow position:chr8:25388261-25388041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:175
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:155-355
               
               
               Cow position:chr8:41905509-41905718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 24

               
               
               Conread position:155-355
               
               
               Cow position:chr8:41914417-41914626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 29

               
               
               Conread position:162-353
               
               
               Cow position:chr8:37862686-37862480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:165-355
               
               
               Cow position:chr8:225269-225467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 49

               
               
               Conread position:173-351
               
               
               Cow position:chr8:53642328-53642516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 75

               
               
               Conread position:183-354
               
               
               Cow position:chr8:14947202-14947396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:193-355
               
               
               Cow position:chr8:57208394-57208576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 165

               
               
               Conread position:205-355
               
               
               Cow position:chr8:44437820-44437665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:215-354
               
               
               Cow position:chr8:20384827-20384679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:224-355
               
               
               Cow position:chr8:35555514-35555655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:230-354
               
               
               Cow position:chr8:36741137-36741258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:232-347
               
               
               Cow position:chr8:48422846-48422724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-353
               
               
               Cow position:chr8:51480801-51480929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-354
               
               
               Cow position:chr8:21083261-21083386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 111

               
               
               Conread position:232-354
               
               
               Cow position:chr8:22183738-22183612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-354
               
               
               Cow position:chr8:28412583-28412715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr8:9229854-9229982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr8:24471682-24471549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr8:34171905-34171775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chr8:40743325-40743452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:240-354
               
               
               Cow position:chr8:37148144-37148021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr8:1834943-1834821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:240-355
               
               
               Cow position:chr8:29029270-29029380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 28

               
               
               Conread position:242-353
               
               
               Cow position:chr8:24363920-24364039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:244-355
               
               
               Cow position:chr8:32295710-32295831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:273-355
               
               
               Cow position:chr8:9517197-9517279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:75
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-253
               
               
               Cow position:chr9:12773512-12773705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 131

               
               
               Conread position:71-344
               
               
               Cow position:chr9:1878181-1877878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):18, 217

               
               
               Conread position:72-231
               
               
               Cow position:chr9:11271524-11271361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:73-326
               
               
               Cow position:chr9:33101285-33101025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):52, 87

               
               
               Conread position:74-235
               
               
               Cow position:chr9:41785042-41785208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:75-235
               
               
               Cow position:chr9:19718512-19718342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:75-235
               
               
               Cow position:chr9:55256729-55256554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:75-244
               
               
               Cow position:chr9:39654247-39654413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:75-260
               
               
               Cow position:chr9:52257638-52257438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 190

               
               
               Conread position:75-344
               
               
               Cow position:chr9:34902276-34901979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:75-349
               
               
               Cow position:chr9:42264042-42264341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 228

               
               
               Conread position:75-352
               
               
               Cow position:chr9:34410572-34410258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:75-355
               
               
               Cow position:chr9:11098630-11098344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 200

               
               
               Conread position:76-211
               
               
               Cow position:chr9:53120827-53120967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:76-240
               
               
               Cow position:chr9:7409600-7409766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:76-248
               
               
               Cow position:chr9:44759104-44758921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:76-352
               
               
               Cow position:chr9:1984661-1984388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:77-333
               
               
               Cow position:chr9:39709676-39709963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:77-355
               
               
               Cow position:chr9:26057605-26057301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):40, 202

               
               
               Conread position:78-232
               
               
               Cow position:chr9:11873470-11873309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:78-248
               
               
               Cow position:chr9:31344785-31344597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:78-250
               
               
               Cow position:chr9:48808972-48809150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 59

               
               
               Conread position:78-347
               
               
               Cow position:chr9:5900129-5899829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 118

               
               
               Conread position:78-351
               
               
               Cow position:chr9:46981397-46981100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 280

               
               
               Conread position:78-353
               
               
               Cow position:chr9:51566673-51566356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):39, 265

               
               
               Conread position:80-230
               
               
               Cow position:chr9:48016816-48016973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:80-327
               
               
               Cow position:chr9:52510941-52511227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:81-230
               
               
               Cow position:chr9:34423446-34423614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-231
               
               
               Cow position:chr9:17769149-17769312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:81-248
               
               
               Cow position:chr9:7543429-7543249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 175

               
               
               Conread position:81-253
               
               
               Cow position:chr9:52649020-52648842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):8, 168

               
               
               Conread position:81-355
               
               
               Cow position:chr9:4263260-4262952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:81-355
               
               
               Cow position:chr9:11123652-11123342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):41, 145

               
               
               Conread position:81-355
               
               
               Cow position:chr9:37016729-37017024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:82-221
               
               
               Cow position:chr9:26493649-26493793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:82-229
               
               
               Cow position:chr9:51891080-51891238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-248
               
               
               Cow position:chr9:9091281-9091095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 181

               
               
               Conread position:82-355
               
               
               Cow position:chr9:9516919-9516628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 249

               
               
               Conread position:82-355
               
               
               Cow position:chr9:45141767-45141461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-227
               
               
               Cow position:chr9:59586145-59586301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr9:2397640-2397800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr9:14738082-14738242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chr9:40586901-40587053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr9:57642343-57642501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-231
               
               
               Cow position:chr9:61019535-61019368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-239
               
               
               Cow position:chr9:765845-765998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:83-247
               
               
               Cow position:chr9:44584431-44584602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 167

               
               
               Conread position:83-248
               
               
               Cow position:chr9:4257147-4256977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:83-248
               
               
               Cow position:chr9:5433475-5433642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:83-248
               
               
               Cow position:chr9:16121360-16121533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):31, 87

               
               
               Conread position:83-248
               
               
               Cow position:chr9:18003348-18003182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):65, 122

               
               
               Conread position:83-248
               
               
               Cow position:chr9:34135559-34135726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:83-248
               
               
               Cow position:chr9:36401830-36401655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 170

               
               
               Conread position:83-248
               
               
               Cow position:chr9:36457826-36458009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 180

               
               
               Conread position:83-248
               
               
               Cow position:chr9:44822492-44822314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:83-249
               
               
               Cow position:chr9:35932984-35932801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-250
               
               
               Cow position:chr9:30137953-30138133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:83-251
               
               
               Cow position:chr9:8992349-8992166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 175

               
               
               Conread position:83-254
               
               
               Cow position:chr9:9459819-9460006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:83-331
               
               
               Cow position:chr9:19902921-19903196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):12, 254

               
               
               Conread position:83-333
               
               
               Cow position:chr9:44247104-44247369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 162

               
               
               Conread position:83-335
               
               
               Cow position:chr9:9311689-9311980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):39, 275

               
               
               Conread position:83-337
               
               
               Cow position:chr9:48118847-48118573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:83-339
               
               
               Cow position:chr9:22318191-22318475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:83-349
               
               
               Cow position:chr9:22434094-22433804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):55, 43

               
               
               Conread position:83-351
               
               
               Cow position:chr9:4341326-4341033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-352
               
               
               Cow position:chr9:6852221-6851931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:83-352
               
               
               Cow position:chr9:20406485-20406771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):42, 131

               
               
               Conread position:83-352
               
               
               Cow position:chr9:58979234-58979535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:83-352
               
               
               Cow position:chr9:61847285-61847013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):39, 156

               
               
               Conread position:83-353
               
               
               Cow position:chr9:8998183-8998495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-353
               
               
               Cow position:chr9:43870826-43871117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:83-353
               
               
               Cow position:chr9:47868854-47869145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 239

               
               
               Conread position:83-354
               
               
               Cow position:chr9:1867301-1867589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 66

               
               
               Conread position:83-354
               
               
               Cow position:chr9:36410520-36410218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:83-355
               
               
               Cow position:chr9:3387546-3387831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:83-355
               
               
               Cow position:chr9:11168575-11168870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:83-355
               
               
               Cow position:chr9:12280803-12281108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chr9:20579758-20579465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):33, 208

               
               
               Conread position:83-355
               
               
               Cow position:chr9:22440643-22440369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 177

               
               
               Conread position:83-355
               
               
               Cow position:chr9:23971063-23970785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 185

               
               
               Conread position:83-355
               
               
               Cow position:chr9:26477042-26477356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):39, 280

               
               
               Conread position:83-355
               
               
               Cow position:chr9:47446178-47445887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):28, 88

               
               
               Conread position:84-248
               
               
               Cow position:chr9:34917346-34917175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 166

               
               
               Conread position:84-249
               
               
               Cow position:chr9:15389379-15389211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 162

               
               
               Conread position:84-355
               
               
               Cow position:chr9:11299842-11299550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:85-230
               
               
               Cow position:chr9:9316301-9316447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 132

               
               
               Conread position:85-355
               
               
               Cow position:chr9:2976740-2977003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 40

               
               
               Conread position:86-248
               
               
               Cow position:chr9:16115772-16115596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:86-248
               
               
               Cow position:chr9:39148915-39149089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:86-251
               
               
               Cow position:chr9:28718550-28718725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 167

               
               
               Conread position:87-230
               
               
               Cow position:chr9:47928754-47928899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:87-235
               
               
               Cow position:chr9:24079139-24079300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:87-238
               
               
               Cow position:chr9:5033053-5032898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:87-294
               
               
               Cow position:chr9:7806120-7805883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:87-344
               
               
               Cow position:chr9:5392907-5393178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):35, 166

               
               
               Conread position:87-351
               
               
               Cow position:chr9:26403629-26403921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:87-354
               
               
               Cow position:chr9:33696891-33697168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):150, 28

               
               
               Conread position:87-355
               
               
               Cow position:chr9:51721053-51720762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 197

               
               
               Conread position:88-231
               
               
               Cow position:chr9:7611952-7611798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:88-354
               
               
               Cow position:chr9:22152247-22151943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:88-355
               
               
               Cow position:chr9:63785074-63784787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):34, 214

               
               
               Conread position:89-250
               
               
               Cow position:chr9:32773058-32773225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 162

               
               
               Conread position:89-273
               
               
               Cow position:chr9:48635048-48634866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:89-305
               
               
               Cow position:chr9:5650125-5649882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:90-355
               
               
               Cow position:chr9:20322255-20321965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):21, 252

               
               
               Conread position:91-355
               
               
               Cow position:chr9:43679959-43680233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 195

               
               
               Conread position:92-353
               
               
               Cow position:chr9:22443784-22443489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:92-355
               
               
               Cow position:chr9:6879640-6879906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):145, 47

               
               
               Conread position:92-355
               
               
               Cow position:chr9:18439316-18439046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:92-355
               
               
               Cow position:chr9:41513485-41513763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:94-247
               
               
               Cow position:chr9:39315706-39315861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 42

               
               
               Conread position:94-354
               
               
               Cow position:chr9:32732823-32732550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:94-355
               
               
               Cow position:chr9:3379001-3379263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 35

               
               
               Conread position:95-248
               
               
               Cow position:chr9:25400345-25400189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 64

               
               
               Conread position:95-273
               
               
               Cow position:chr9:55529645-55529847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:104-248
               
               
               Cow position:chr9:58369142-58368985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:115-275
               
               
               Cow position:chr9:26859232-26859402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:117-339
               
               
               Cow position:chr9:3353236-3353475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 199

               
               
               Conread position:117-355
               
               
               Cow position:chr9:20319180-20318939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 6

               
               
               Conread position:122-228
               
               
               Cow position:chr9:1878807-1878914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:122-247
               
               
               Cow position:chr9:63134281-63134404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:123-355
               
               
               Cow position:chr9:11313627-11313371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:132-355
               
               
               Cow position:chr9:10309102-10308868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):6, 86

               
               
               Conread position:134-253
               
               
               Cow position:chr9:64154776-64154657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:137-231
               
               
               Cow position:chr9:8645166-8645260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-231
               
               
               Cow position:chr9:57117071-57116977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:82
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-253
               
               
               Cow position:chr9:1884230-1884115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-268
               
               
               Cow position:chr9:44527018-44527153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:137-278
               
               
               Cow position:chr9:58440475-58440329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 101

               
               
               Conread position:137-284
               
               
               Cow position:chr9:43342231-43342390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 133

               
               
               Conread position:137-352
               
               
               Cow position:chr9:1520839-1520600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 36

               
               
               Conread position:137-353
               
               
               Cow position:chr9:17411293-17411054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 235

               
               
               Conread position:137-354
               
               
               Cow position:chr9:33092860-33093092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:137-354
               
               
               Cow position:chr9:41282915-41283153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:140-230
               
               
               Cow position:chr9:2951605-2951515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:78
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:143-248
               
               
               Cow position:chr9:50118066-50117964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:143-250
               
               
               Cow position:chr9:8834221-8834115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:143-252
               
               
               Cow position:chr9:50977347-50977236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:143-355
               
               
               Cow position:chr9:9443695-9443457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:144-230
               
               
               Cow position:chr9:17785659-17785573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-240
               
               
               Cow position:chr9:28378875-28378971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr9:20828813-20828915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:144-247
               
               
               Cow position:chr9:60110157-60110260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr9:1729767-1729664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr9:36634855-36634753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:144-248
               
               
               Cow position:chr9:42062005-42062109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:144-252
               
               
               Cow position:chr9:6839901-6840009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:144-271
               
               
               Cow position:chr9:9243458-9243589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:144-301
               
               
               Cow position:chr9:12355693-12355846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:144-352
               
               
               Cow position:chr9:9723969-9723745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:144-352
               
               
               Cow position:chr9:27279216-27279446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:144-352
               
               
               Cow position:chr9:55117995-55118217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:144-353
               
               
               Cow position:chr9:52839972-52839748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:144-354
               
               
               Cow position:chr9:44680705-44680490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):89, 200

               
               
               Conread position:144-355
               
               
               Cow position:chr9:5594409-5594640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 196

               
               
               Conread position:144-355
               
               
               Cow position:chr9:9815320-9815555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):89, 179

               
               
               Conread position:144-355
               
               
               Cow position:chr9:10010722-10010942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):89, 55

               
               
               Conread position:144-355
               
               
               Cow position:chr9:35105883-35105650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:187
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):89, 214

               
               
               Conread position:144-355
               
               
               Cow position:chr9:37677801-37678024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):96, 210

               
               
               Conread position:144-355
               
               
               Cow position:chr9:40542043-40542259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:144-355
               
               
               Cow position:chr9:43623175-43623394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 204

               
               
               Conread position:144-355
               
               
               Cow position:chr9:50081133-50080906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:144-355
               
               
               Cow position:chr9:64050654-64050420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:145-353
               
               
               Cow position:chr9:28354425-28354657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 198

               
               
               Conread position:145-354
               
               
               Cow position:chr9:3774073-3774300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 73

               
               
               Conread position:145-355
               
               
               Cow position:chr9:19034265-19034480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:145-355
               
               
               Cow position:chr9:38343792-38344031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:146-224
               
               
               Cow position:chr9:31638748-31638669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:80
               
               
               Alignm identity:73
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:148-328
               
               
               Cow position:chr9:23788350-23788551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:148-355
               
               
               Cow position:chr9:1972859-1973082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:149-253
               
               
               Cow position:chr9:54051689-54051789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:149-276
               
               
               Cow position:chr9:41716353-41716480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):20, 25

               
               
               Conread position:149-353
               
               
               Cow position:chr9:63745727-63745949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:149-354
               
               
               Cow position:chr9:64559970-64559745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr9:33597898-33598121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:149-355
               
               
               Cow position:chr9:38961516-38961294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):87, 23

               
               
               Conread position:149-355
               
               
               Cow position:chr9:54716690-54716472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 178

               
               
               Conread position:150-352
               
               
               Cow position:chr9:28392113-28391898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 146

               
               
               Conread position:150-354
               
               
               Cow position:chr9:21888083-21888306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr9:10819915-10819692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:150-355
               
               
               Cow position:chr9:44467427-44467212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 69

               
               
               Conread position:150-355
               
               
               Cow position:chr9:55075215-55074993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:152-347
               
               
               Cow position:chr9:23541468-23541275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:152-352
               
               
               Cow position:chr9:39681254-39681477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:153-342
               
               
               Cow position:chr9:29339397-29339197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 169

               
               
               Conread position:153-352
               
               
               Cow position:chr9:50075980-50076195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:153-354
               
               
               Cow position:chr9:11304159-11303942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):80, 176

               
               
               Conread position:153-354
               
               
               Cow position:chr9:29840820-29841024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):94, 19

               
               
               Conread position:153-355
               
               
               Cow position:chr9:36026485-36026691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:153-355
               
               
               Cow position:chr9:37069643-37069429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:154-352
               
               
               Cow position:chr9:18252995-18252786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:154-353
               
               
               Cow position:chr9:22408674-22408882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):62, 137

               
               
               Conread position:154-355
               
               
               Cow position:chr9:3070492-3070280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:154-355
               
               
               Cow position:chr9:58134086-58133886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):99, 67

               
               
               Conread position:155-252
               
               
               Cow position:chr9:14597320-14597222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:155-349
               
               
               Cow position:chr9:38846415-38846209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:157-354
               
               
               Cow position:chr9:15225376-15225159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:160-355
               
               
               Cow position:chr9:7362951-7363163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 179

               
               
               Conread position:161-355
               
               
               Cow position:chr9:8524783-8524977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:162-351
               
               
               Cow position:chr9:29035075-29034894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):56, 50

               
               
               Conread position:166-355
               
               
               Cow position:chr9:43936874-43937080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:171-355
               
               
               Cow position:chr9:35375359-35375568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:173-354
               
               
               Cow position:chr9:39577675-39577872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:173-355
               
               
               Cow position:chr9:54178484-54178292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:181-355
               
               
               Cow position:chr9:26390723-26390908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:206-355
               
               
               Cow position:chr9:7409768-7409918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:207-355
               
               
               Cow position:chr9:29091779-29091935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:225-355
               
               
               Cow position:chr9:22228075-22227942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:230-353
               
               
               Cow position:chr9:20989442-20989319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:230-353
               
               
               Cow position:chr9:31638637-31638503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:230-355
               
               
               Cow position:chr9:30138141-30138269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 73

               
               
               Conread position:230-355
               
               
               Cow position:chr9:31270788-31270920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:232-354
               
               
               Cow position:chr9:3371577-3371706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:233-353
               
               
               Cow position:chr9:32710940-32711067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:234-354
               
               
               Cow position:chr9:6225443-6225314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:234-355
               
               
               Cow position:chr9:36843809-36843927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 44

               
               
               Conread position:239-355
               
               
               Cow position:chr9:18002937-18002811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:240-348
               
               
               Cow position:chr9:1851096-1850981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:240-355
               
               
               Cow position:chr9:34000602-34000483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:248-351
               
               
               Cow position:chr9:32812375-32812481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:272-354
               
               
               Cow position:chr9:41995767-41995849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:73
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:273-355
               
               
               Cow position:chr9:6840060-6840142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:76
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-349
               
               
               Cow position:chrX:38549694-38549368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:71-250
               
               
               Cow position:chrX:28850953-28850767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:71-351
               
               
               Cow position:chrX:31436710-31436397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:72-352
               
               
               Cow position:chrX:9425522-9425822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):16, 247

               
               
               Conread position:72-352
               
               
               Cow position:chrX:36283580-36283270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:72-355
               
               
               Cow position:chrX:8925921-8925616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:73-240
               
               
               Cow position:chrX:42432275-42432455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 158

               
               
               Conread position:73-353
               
               
               Cow position:chrX:44040416-44040117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):15, 248

               
               
               Conread position:74-274
               
               
               Cow position:chrX:11781682-11781468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:75-230
               
               
               Cow position:chrX:1101787-1101620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:75-350
               
               
               Cow position:chrX:28846657-28846961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:76-229
               
               
               Cow position:chrX:9451576-9451409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 122

               
               
               Conread position:76-355
               
               
               Cow position:chrX:25207626-25207926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 139

               
               
               Conread position:77-231
               
               
               Cow position:chrX:19761983-19761816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:77-350
               
               
               Cow position:chrX:13924095-13923792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:77-353
               
               
               Cow position:chrX:20168789-20168475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:77-354
               
               
               Cow position:chrX:27261424-27261104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):37, 294

               
               
               Conread position:77-355
               
               
               Cow position:chrX:41027396-41027071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:78-248
               
               
               Cow position:chrX:17966557-17966385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:78-355
               
               
               Cow position:chrX:40680848-40680526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:81-231
               
               
               Cow position:chrX:41199452-41199286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:81-235
               
               
               Cow position:chrX:17525647-17525809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:81-235
               
               
               Cow position:chrX:20584542-20584386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:81-253
               
               
               Cow position:chrX:4467181-4467008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:81-253
               
               
               Cow position:chrX:9201773-9201589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):45, 174

               
               
               Conread position:81-353
               
               
               Cow position:chrX:27446913-27446613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):41, 225

               
               
               Conread position:81-355
               
               
               Cow position:chrX:34836842-34837139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 255

               
               
               Conread position:81-355
               
               
               Cow position:chrX:38964327-38964019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:82-231
               
               
               Cow position:chrX:16555994-16556155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:82-235
               
               
               Cow position:chrX:16984864-16984699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:82-248
               
               
               Cow position:chrX:42894151-42893972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 174

               
               
               Conread position:82-249
               
               
               Cow position:chrX:42875438-42875255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:82-253
               
               
               Cow position:chrX:12972-12788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 132

               
               
               Conread position:82-332
               
               
               Cow position:chrX:4109414-4109128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:82-348
               
               
               Cow position:chrX:4152815-4153113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:83-193
               
               
               Cow position:chrX:13893034-13892917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:83-230
               
               
               Cow position:chrX:25925428-25925579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:83-230
               
               
               Cow position:chrX:41011118-41010961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:83-230
               
               
               Cow position:chrX:41941851-41941686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-230
               
               
               Cow position:chrX:42331501-42331347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-230
               
               
               Cow position:chrX:46910036-46909878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-231
               
               
               Cow position:chrX:35885504-35885665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-235
               
               
               Cow position:chrX:13177256-13177418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-235
               
               
               Cow position:chrX:27668734-27668900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-240
               
               
               Cow position:chrX:1719331-1719168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:83-240
               
               
               Cow position:chrX:11454402-11454239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 121

               
               
               Conread position:83-240
               
               
               Cow position:chrX:37751883-37752053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:83-247
               
               
               Cow position:chrX:11762783-11762954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 167

               
               
               Conread position:83-248
               
               
               Cow position:chrX:16763702-16763879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:83-248
               
               
               Cow position:chrX:24054889-24054723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:83-248
               
               
               Cow position:chrX:26205230-26205404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:83-248
               
               
               Cow position:chrX:27270597-27270421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:83-248
               
               
               Cow position:chrX:32431827-32431670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:83-248
               
               
               Cow position:chrX:39180018-39180187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:83-248
               
               
               Cow position:chrX:46068536-46068715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:83-249
               
               
               Cow position:chrX:23108255-23108086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:83-250
               
               
               Cow position:chrX:33466850-33466664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:83-251
               
               
               Cow position:chrX:25232210-25232041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:83-251
               
               
               Cow position:chrX:32747948-32747769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:83-253
               
               
               Cow position:chrX:27306667-27306495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):62, 162

               
               
               Conread position:83-253
               
               
               Cow position:chrX:31442611-31442788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 167

               
               
               Conread position:83-253
               
               
               Cow position:chrX:31744787-31744963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 166

               
               
               Conread position:83-254
               
               
               Cow position:chrX:27415359-27415542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:83-273
               
               
               Cow position:chrX:28923240-28923046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:83-291
               
               
               Cow position:chrX:4559962-4559725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-314
               
               
               Cow position:chrX:35392077-35392319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 203

               
               
               Conread position:83-317
               
               
               Cow position:chrX:35390535-35390777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):42, 142

               
               
               Conread position:83-330
               
               
               Cow position:chrX:39353000-39352720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:83-345
               
               
               Cow position:chrX:42246953-42247261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-346
               
               
               Cow position:chrX:31729665-31729366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-348
               
               
               Cow position:chrX:917171-917443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):154, 38

               
               
               Conread position:83-353
               
               
               Cow position:chrX:1503536-1503255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:83-353
               
               
               Cow position:chrX:16762996-16762688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 280

               
               
               Conread position:83-353
               
               
               Cow position:chrX:36356332-36356032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:83-353
               
               
               Cow position:chrX:41123273-41122985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:83-353
               
               
               Cow position:chrX:41238134-41238434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):34, 269

               
               
               Conread position:83-353
               
               
               Cow position:chrX:46072602-46072903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-354
               
               
               Cow position:chrX:46588048-46587736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:83-355
               
               
               Cow position:chrX:4268842-4269146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:83-355
               
               
               Cow position:chrX:7179111-7178817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:83-355
               
               
               Cow position:chrX:11614903-11614615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:83-355
               
               
               Cow position:chrX:11656306-11656007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:83-355
               
               
               Cow position:chrX:17662393-17662678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):142, 38

               
               
               Conread position:83-355
               
               
               Cow position:chrX:20339667-20339974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):34, 135

               
               
               Conread position:83-355
               
               
               Cow position:chrX:23939846-23940113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:83-355
               
               
               Cow position:chrX:27175228-27174911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:83-355
               
               
               Cow position:chrX:33204765-33205049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):146, 42

               
               
               Conread position:83-355
               
               
               Cow position:chrX:44055031-44054722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 244

               
               
               Conread position:84-248
               
               
               Cow position:chrX:2551304-2551135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:84-248
               
               
               Cow position:chrX:23136958-23136786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 157

               
               
               Conread position:84-355
               
               
               Cow position:chrX:23497470-23497753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:84-355
               
               
               Cow position:chrX:39558156-39558435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:85-355
               
               
               Cow position:chrX:6407770-6407464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 153

               
               
               Conread position:86-218
               
               
               Cow position:chrX:1571371-1571514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:86-231
               
               
               Cow position:chrX:26881854-26882018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:86-273
               
               
               Cow position:chrX:29478947-29478728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:86-353
               
               
               Cow position:chrX:16575324-16575040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):30, 209

               
               
               Conread position:87-235
               
               
               Cow position:chrX:40567829-40567679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:87-352
               
               
               Cow position:chrX:11856626-11856347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):146, 38

               
               
               Conread position:87-352
               
               
               Cow position:chrX:35413818-35413538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 187

               
               
               Conread position:87-353
               
               
               Cow position:chrX:30420743-30421012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:88-231
               
               
               Cow position:chrX:15100201-15100045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:88-248
               
               
               Cow position:chrX:35681790-35681613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):27, 172

               
               
               Conread position:89-307
               
               
               Cow position:chrX:25441336-25441567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 34

               
               
               Conread position:90-247
               
               
               Cow position:chrX:44123470-44123302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 49

               
               
               Conread position:91-247
               
               
               Cow position:chrX:20152068-20151903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):32, 153

               
               
               Conread position:92-351
               
               
               Cow position:chrX:15146996-15147268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:92-355
               
               
               Cow position:chrX:20881742-20882022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:94-351
               
               
               Cow position:chrX:14973540-14973821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:95-248
               
               
               Cow position:chrX:41809959-41810122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):27, 158

               
               
               Conread position:95-351
               
               
               Cow position:chrX:41192905-41192627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:96-355
               
               
               Cow position:chrX:4768943-4768658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 247

               
               
               Conread position:112-240
               
               
               Cow position:chrX:11582402-11582274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:113-355
               
               
               Cow position:chrX:35387746-35387987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:114-252
               
               
               Cow position:chrX:32318492-32318345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:121-248
               
               
               Cow position:chrX:34270734-34270605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:135-355
               
               
               Cow position:chrX:38728892-38728653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:136-246
               
               
               Cow position:chrX:11653927-11653816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:136-353
               
               
               Cow position:chrX:19003434-19003217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 23

               
               
               Conread position:137-230
               
               
               Cow position:chrX:16481414-16481507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:79
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-231
               
               
               Cow position:chrX:31373692-31373598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:137-253
               
               
               Cow position:chrX:2314463-2314578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:137-272
               
               
               Cow position:chrX:1122393-1122538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:137-327
               
               
               Cow position:chrX:42086983-42086800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:137-353
               
               
               Cow position:chrX:13382481-13382247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:137-353
               
               
               Cow position:chrX:27393870-27394103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):97, 193

               
               
               Conread position:137-354
               
               
               Cow position:chrX:28878018-28878253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:137-354
               
               
               Cow position:chrX:44397168-44396934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:137-355
               
               
               Cow position:chrX:7718988-7718771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):117, 36

               
               
               Conread position:137-355
               
               
               Cow position:chrX:28134494-28134260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):92, 71

               
               
               Conread position:137-355
               
               
               Cow position:chrX:34503078-34502837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:139-352
               
               
               Cow position:chrX:38654287-38654512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):74, 217

               
               
               Conread position:143-354
               
               
               Cow position:chrX:6278348-6278584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:143-355
               
               
               Cow position:chrX:27228277-27228043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:144-231
               
               
               Cow position:chrX:44995648-44995560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:77
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:144-238
               
               
               Cow position:chrX:22552830-22552924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:79
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:144-248
               
               
               Cow position:chrX:4092073-4091970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-248
               
               
               Cow position:chrX:34420883-34420780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:144-326
               
               
               Cow position:chrX:32977937-32978133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:144-350
               
               
               Cow position:chrX:24331925-24331699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:144-352
               
               
               Cow position:chrX:27771819-27772043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):73, 171

               
               
               Conread position:144-352
               
               
               Cow position:chrX:32420359-32420138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:144-352
               
               
               Cow position:chrX:37836727-37836507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:144-353
               
               
               Cow position:chrX:30922320-30922103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:144-353
               
               
               Cow position:chrX:32821177-32820947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:144-353
               
               
               Cow position:chrX:42873534-42873311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 168

               
               
               Conread position:144-354
               
               
               Cow position:chrX:5679423-5679649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 174

               
               
               Conread position:144-354
               
               
               Cow position:chrX:5872466-5872237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:188
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):89, 180

               
               
               Conread position:144-354
               
               
               Cow position:chrX:42492375-42492597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:144-355
               
               
               Cow position:chrX:4296676-4296904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 161

               
               
               Conread position:144-355
               
               
               Cow position:chrX:6559308-6559530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:144-355
               
               
               Cow position:chrX:9770538-9770761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):8, 82

               
               
               Conread position:144-355
               
               
               Cow position:chrX:10516402-10516171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):88, 203

               
               
               Conread position:144-355
               
               
               Cow position:chrX:21593436-21593203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:144-355
               
               
               Cow position:chrX:22813211-22812982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:144-355
               
               
               Cow position:chrX:31252556-31252333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:144-355
               
               
               Cow position:chrX:35543036-35542810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:144-355
               
               
               Cow position:chrX:36976100-36975867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 195

               
               
               Conread position:144-355
               
               
               Cow position:chrX:37129418-37129184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):89, 210

               
               
               Conread position:145-247
               
               
               Cow position:chrX:42449866-42449967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:145-249
               
               
               Cow position:chrX:45934438-45934334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 92

               
               
               Conread position:145-355
               
               
               Cow position:chrX:27705734-27705502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):88, 131

               
               
               Conread position:145-355
               
               
               Cow position:chrX:47342263-47342056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):105, 171

               
               
               Conread position:146-231
               
               
               Cow position:chrX:10237767-10237851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:77
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:148-231
               
               
               Cow position:chrX:24547356-24547439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:74
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:148-248
               
               
               Cow position:chrX:21328058-21327959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:149-248
               
               
               Cow position:chrX:23498536-23498635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):87, 83

               
               
               Conread position:149-248
               
               
               Cow position:chrX:27667569-27667471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:149-248
               
               
               Cow position:chrX:31829317-31829415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:149-333
               
               
               Cow position:chrX:6463742-6463548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):88, 160

               
               
               Conread position:149-341
               
               
               Cow position:chrX:22914898-22915107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):84, 46

               
               
               Conread position:149-348
               
               
               Cow position:chrX:5900606-5900391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:149-351
               
               
               Cow position:chrX:43527652-43527429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:149-354
               
               
               Cow position:chrX:25282894-25283098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 84

               
               
               Conread position:149-355
               
               
               Cow position:chrX:4043723-4043939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):81, 188

               
               
               Conread position:149-355
               
               
               Cow position:chrX:29601684-29601915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:150-273
               
               
               Cow position:chrX:32877232-32877363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:150-306
               
               
               Cow position:chrX:23188641-23188813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:150-354
               
               
               Cow position:chrX:42855601-42855371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):87, 187

               
               
               Conread position:150-355
               
               
               Cow position:chrX:22387107-22387327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:151-250
               
               
               Cow position:chrX:20743746-20743648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:151-352
               
               
               Cow position:chrX:8900144-8899948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):101, 60

               
               
               Conread position:151-355
               
               
               Cow position:chrX:23513879-23514100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):86, 27

               
               
               Conread position:152-354
               
               
               Cow position:chrX:38226969-38227176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):77, 36

               
               
               Conread position:153-273
               
               
               Cow position:chrX:5679791-5679916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:153-342
               
               
               Cow position:chrX:31294432-31294635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):80, 140

               
               
               Conread position:153-355
               
               
               Cow position:chrX:29194370-29194149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:154-355
               
               
               Cow position:chrX:29680122-29680345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:161-354
               
               
               Cow position:chrX:47481928-47481718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:162-353
               
               
               Cow position:chrX:1514288-1514489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):68, 168

               
               
               Conread position:166-355
               
               
               Cow position:chrX:27516646-27516444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:172-355
               
               
               Cow position:chrX:43049452-43049264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:207-355
               
               
               Cow position:chrX:35681412-35681256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:213-352
               
               
               Cow position:chrX:18204402-18204543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:221-355
               
               
               Cow position:chrX:28845890-28845746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:225-354
               
               
               Cow position:chrX:42461691-42461828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:225-354
               
               
               Cow position:chrX:42875036-42874900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:230-355
               
               
               Cow position:chrX:11589540-11589672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:232-352
               
               
               Cow position:chrX:12018338-12018210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-353
               
               
               Cow position:chrX:27685294-27685165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chrX:26440737-26440863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:232-355
               
               
               Cow position:chrX:36961687-36961558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:233-353
               
               
               Cow position:chrX:19188976-19188855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:233-355
               
               
               Cow position:chrX:17498130-17498000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:233-355
               
               
               Cow position:chrX:42789665-42789536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:235-355
               
               
               Cow position:chrX:35042261-35042140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:235-355
               
               
               Cow position:chrX:40648029-40647901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:240-352
               
               
               Cow position:chrX:4091678-4091566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:240-353
               
               
               Cow position:chrX:12116085-12115963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:240-354
               
               
               Cow position:chrX:41199144-41199023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:241-353
               
               
               Cow position:chrX:20790953-20790838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:242-355
               
               
               Cow position:chrX:14003610-14003726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:268-355
               
               
               Cow position:chrX:38439479-38439393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:78
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:277-355
               
               
               Cow position:chrX:41743905-41743827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:79
               
               
               Alignm identity:71
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0