• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
rcut36_b11.y1
        

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:30520274-30520539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 92
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:99914921-99915185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
60, 30
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr1:12060725-12060461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr1:52357778-52357512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr1:102433550-102433305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
3-289
               

               
Cow position:
               
chr1:55320592-55320307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
107, 60
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr1:57364863-57364613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
58, 27
               

               
Conread position:
               
4-259
               

               
Cow position:
               
chr1:29607576-29607319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
4-261
               

               
Cow position:
               
chr1:31364621-31364356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 20
               

               
Conread position:
               
7-179
               

               
Cow position:
               
chr1:80445640-80445815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr1:4209697-4209935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr1:20830384-20830622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr1:29363784-29364022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr1:50210353-50210115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr1:50248209-50247983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr1:53200034-53200271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr1:59207590-59207352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr1:77923197-77923435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr1:82565602-82565840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr1:85793170-85793408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr1:18964880-18964630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr1:33897749-33897999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr1:40056593-40056843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr1:56724633-56724883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr1:81288624-81288874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-258
               

               
Cow position:
               
chr1:10724070-10724323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr1:24652755-24653009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr1:67002647-67002898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
101, 16
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr1:71561256-71561000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr1:17940281-17940024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr1:24442872-24442614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr1:42737922-42738176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
102, 16
               

               
Conread position:
               
8-210
               

               
Cow position:
               
chr1:77115181-77114968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
8-261
               

               
Cow position:
               
chr1:73069569-73069313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
9-242
               

               
Cow position:
               
chr1:56165029-56165262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 201
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chr1:68606054-68605812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
9-255
               

               
Cow position:
               
chr1:9379024-9378779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
19, 38
               

               
Conread position:
               
9-255
               

               
Cow position:
               
chr1:67833641-67833397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
13, 42
               

               
Conread position:
               
9-259
               

               
Cow position:
               
chr1:67910038-67910292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr1:63604278-63604025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr1:76750483-76750225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
52, 33
               

               
Conread position:
               
10-210
               

               
Cow position:
               
chr1:86595000-86594799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
10-220
               

               
Cow position:
               
chr1:39107075-39107283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
52, 26
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr1:21592083-21592314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
12, 200
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr1:40575693-40575925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
12, 201
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr1:39545280-39545514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
12, 212
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr1:69768073-69768307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
12, 201
               

               
Conread position:
               
10-255
               

               
Cow position:
               
chr1:21088925-21089170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
10-255
               

               
Cow position:
               
chr1:88132266-88132515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
10-255
               

               
Cow position:
               
chr1:91900514-91900761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
10-256
               

               
Cow position:
               
chr1:76741741-76741493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
10-259
               

               
Cow position:
               
chr1:34694177-34694431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
10-259
               

               
Cow position:
               
chr1:57423339-57423087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
12, 201
               

               
Conread position:
               
10-259
               

               
Cow position:
               
chr1:80357680-80357425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
10-259
               

               
Cow position:
               
chr1:82477469-82477721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
12, 201
               

               
Conread position:
               
10-259
               

               
Cow position:
               
chr1:86546644-86546392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
25, 201
               

               
Conread position:
               
10-261
               

               
Cow position:
               
chr1:69404494-69404747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 51
               

               
Conread position:
               
11-179
               

               
Cow position:
               
chr1:20525972-20526143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
11-239
               

               
Cow position:
               
chr1:33552419-33552652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-239
               

               
Cow position:
               
chr1:90607385-90607155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
11-242
               

               
Cow position:
               
chr1:33852759-33852995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
11-243
               

               
Cow position:
               
chr1:17011245-17011011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
11-243
               

               
Cow position:
               
chr1:85778960-85778728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
11-244
               

               
Cow position:
               
chr1:25551454-25551692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-255
               

               
Cow position:
               
chr1:40683252-40683003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
11-255
               

               
Cow position:
               
chr1:93856004-93856251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-257
               

               
Cow position:
               
chr1:62243163-62242910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
11-259
               

               
Cow position:
               
chr1:17035104-17034850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
11-259
               

               
Cow position:
               
chr1:40511528-40511278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
11-260
               

               
Cow position:
               
chr1:25053784-25054039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr1:26517399-26517142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr1:28874557-28874814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr1:30074361-30074615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr1:55778078-55778333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr1:62804685-62804429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr1:72185390-72185133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr1:79455463-79455206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr1:94661162-94661416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
12-243
               

               
Cow position:
               
chr1:55275540-55275304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
15, 20
               

               
Conread position:
               
12-252
               

               
Cow position:
               
chr1:82922668-82922427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
22, 205
               

               
Conread position:
               
12-261
               

               
Cow position:
               
chr1:56192673-56192417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
13-261
               

               
Cow position:
               
chr1:5503458-5503711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
14-176
               

               
Cow position:
               
chr1:27187790-27187954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
14-255
               

               
Cow position:
               
chr1:3933764-3933520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
14-255
               

               
Cow position:
               
chr1:9259978-9260224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
15-213
               

               
Cow position:
               
chr1:53365037-53365234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 64
               

               
Conread position:
               
15-223
               

               
Cow position:
               
chr1:33351066-33351276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
47, 27
               

               
Conread position:
               
15-239
               

               
Cow position:
               
chr1:8826548-8826777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
15-255
               

               
Cow position:
               
chr1:82654151-82654396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
15-261
               

               
Cow position:
               
chr1:76619985-76619732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
16-255
               

               
Cow position:
               
chr1:86508418-86508156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
21, 217
               

               
Conread position:
               
16-259
               

               
Cow position:
               
chr1:22619176-22618928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr1:49972679-49972426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
11, 16
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr1:65387806-65388059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
11, 21
               

               
Conread position:
               
17-261
               

               
Cow position:
               
chr1:56142848-56142596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
20-261
               

               
Cow position:
               
chr1:30533525-30533275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
21-239
               

               
Cow position:
               
chr1:29039529-29039756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
38, 199
               

               
Conread position:
               
21-243
               

               
Cow position:
               
chr1:11859266-11859036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
17, 197
               

               
Conread position:
               
21-255
               

               
Cow position:
               
chr1:72082257-72082495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
23-252
               

               
Cow position:
               
chr1:57658398-57658629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
36-239
               

               
Cow position:
               
chr1:101794789-101794984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
36-255
               

               
Cow position:
               
chr1:29035814-29036035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
24, 120
               

               
Conread position:
               
36-255
               

               
Cow position:
               
chr1:89769024-89768802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
26, 178
               

               
Conread position:
               
36-258
               

               
Cow position:
               
chr1:79635478-79635255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
36-259
               

               
Cow position:
               
chr1:81862467-81862241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 178
               

               
Conread position:
               
36-260
               

               
Cow position:
               
chr1:38417648-38417869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
36-261
               

               
Cow position:
               
chr1:98786453-98786682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
36-264
               

               
Cow position:
               
chr1:33713585-33713831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
24, 161
               

               
Conread position:
               
41-264
               

               
Cow position:
               
chr1:73020405-73020185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
42-255
               

               
Cow position:
               
chr1:102780809-102780601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
199, 18
               

               
Conread position:
               
44-239
               

               
Cow position:
               
chr1:22345526-22345721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 141
               

               
Conread position:
               
44-245
               

               
Cow position:
               
chr1:72112529-72112737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
18, 179
               

               
Conread position:
               
50-226
               

               
Cow position:
               
chr1:65021270-65021094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
58, 160
               

               
Conread position:
               
54-255
               

               
Cow position:
               
chr1:18240686-18240494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
58-252
               

               
Cow position:
               
chr1:38386891-38386700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
52, 8
               

               
Conread position:
               
58-259
               

               
Cow position:
               
chr1:1828768-1828565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 158
               

               
Conread position:
               
60-261
               

               
Cow position:
               
chr1:3384396-3384193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
49, 157
               

               
Conread position:
               
60-262
               

               
Cow position:
               
chr1:40966873-40966669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
50, 157
               

               
Conread position:
               
70-252
               

               
Cow position:
               
chr1:26813518-26813337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 112
               

               
Conread position:
               
70-259
               

               
Cow position:
               
chr1:29412645-29412454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
39, 141
               

               
Conread position:
               
83-255
               

               
Cow position:
               
chr1:62921126-62921298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
87-228
               

               
Cow position:
               
chr1:102550075-102550216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 124
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr1:45003771-45003939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 124
               

               
Conread position:
               
95-259
               

               
Cow position:
               
chr1:82911250-82911084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
98-261
               

               
Cow position:
               
chr1:58338422-58338587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
11, 118
               

               
Conread position:
               
100-252
               

               
Cow position:
               
chr1:89482534-89482687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 111
               

               
Conread position:
               
108-252
               

               
Cow position:
               
chr1:72037957-72037816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
116-252
               

               
Cow position:
               
chr1:98617189-98617053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
7, 100
               

               
Conread position:
               
117-255
               

               
Cow position:
               
chr1:101012582-101012445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
129-264
               

               
Cow position:
               
chr1:87435860-87435996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
114, 81
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr10:17433879-17434076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
109, 30
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr10:14863309-14863508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr10:32702257-32702525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 31
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chr10:53320890-53320705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
58, 29
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chr10:1665060-1664845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
104, 16
               

               
Conread position:
               
4-261
               

               
Cow position:
               
chr10:57988491-57988227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 27
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr10:20382519-20382330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
7-242
               

               
Cow position:
               
chr10:21739244-21739008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr10:10172246-10172484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr10:25651918-25651680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr10:33870796-33871034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr10:57555824-57555586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr10:38544379-38544136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr10:55094777-55095022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr10:41158924-41159174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr10:41878435-41878685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr10:29109475-29109218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
8-205
               

               
Cow position:
               
chr10:47908448-47908648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr10:58812249-58812044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 37
               

               
Conread position:
               
8-261
               

               
Cow position:
               
chr10:7280595-7280336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 23
               

               
Conread position:
               
10-205
               

               
Cow position:
               
chr10:39181311-39181508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr10:16927180-16927418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
10-255
               

               
Cow position:
               
chr10:44708099-44707856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
11-211
               

               
Cow position:
               
chr10:21517464-21517274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 100
               

               
Conread position:
               
11-243
               

               
Cow position:
               
chr10:7896966-7896732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
11-255
               

               
Cow position:
               
chr10:21488470-21488717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr10:23409727-23409482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr10:39439668-39439921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
11, 206
               

               
Conread position:
               
12-252
               

               
Cow position:
               
chr10:41568617-41568859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
12-258
               

               
Cow position:
               
chr10:68160125-68159873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 205
               

               
Conread position:
               
12-261
               

               
Cow position:
               
chr10:8291559-8291812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
12-261
               

               
Cow position:
               
chr10:37771397-37771653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
14-238
               

               
Cow position:
               
chr10:47788191-47788418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 200
               

               
Conread position:
               
14-259
               

               
Cow position:
               
chr10:31525252-31525495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 182
               

               
Conread position:
               
15-261
               

               
Cow position:
               
chr10:1379012-1379265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
16-239
               

               
Cow position:
               
chr10:41634916-41635133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr10:2119493-2119242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 16
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr10:29845139-29844890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 16
               

               
Conread position:
               
16-262
               

               
Cow position:
               
chr10:62407265-62407012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
19-252
               

               
Cow position:
               
chr10:22908949-22908710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
17, 97
               

               
Conread position:
               
19-260
               

               
Cow position:
               
chr10:20369585-20369342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
90, 78
               

               
Conread position:
               
19-261
               

               
Cow position:
               
chr10:39778608-39778363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
20-257
               

               
Cow position:
               
chr10:38849791-38850031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
20-261
               

               
Cow position:
               
chr10:22102754-22103002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
8, 12
               

               
Conread position:
               
21-252
               

               
Cow position:
               
chr10:41387464-41387227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
21-261
               

               
Cow position:
               
chr10:38343842-38343597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
21-261
               

               
Cow position:
               
chr10:39039786-39039547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
36-255
               

               
Cow position:
               
chr10:19143080-19142856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
26, 165
               

               
Conread position:
               
36-259
               

               
Cow position:
               
chr10:41151198-41150968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 160
               

               
Conread position:
               
37-255
               

               
Cow position:
               
chr10:54930678-54930454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
22, 179
               

               
Conread position:
               
43-243
               

               
Cow position:
               
chr10:39814848-39814650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
43-258
               

               
Cow position:
               
chr10:40150635-40150432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
61-255
               

               
Cow position:
               
chr10:6556101-6556294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
61-255
               

               
Cow position:
               
chr10:29732308-29732500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
49, 150
               

               
Conread position:
               
72-243
               

               
Cow position:
               
chr10:28255830-28255659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 111
               

               
Conread position:
               
72-257
               

               
Cow position:
               
chr10:16478320-16478505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
79-259
               

               
Cow position:
               
chr10:32828458-32828639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
164, 131
               

               
Conread position:
               
93-287
               

               
Cow position:
               
chr10:20374966-20374770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
18, 118
               

               
Conread position:
               
138-259
               

               
Cow position:
               
chr10:48375970-48375848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
107, 69
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr11:29667450-29667202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr11:4055184-4054946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
59, 102
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chr11:27668845-27668586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
4-239
               

               
Cow position:
               
chr11:10056646-10056884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
24, 210
               

               
Conread position:
               
4-259
               

               
Cow position:
               
chr11:1489029-1488765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 214
               

               
Conread position:
               
7-239
               

               
Cow position:
               
chr11:25393344-25393568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
104, 29
               

               
Conread position:
               
7-242
               

               
Cow position:
               
chr11:52420553-52420779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr11:3494140-3494378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr11:44517713-44517477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr11:50836517-50836279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr11:20733087-20732838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr11:23249319-23249073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr11:30122694-30122455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
55, 17
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr11:31927306-31927556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr11:41234165-41234415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr11:53286018-53285772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr11:67451643-67451893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-258
               

               
Cow position:
               
chr11:67154831-67155083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr11:15986402-15986649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr11:17106531-17106275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr11:17119193-17118936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr11:19062926-19062670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr11:49553005-49552745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
53, 215
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr11:50949177-50948917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
13, 161
               

               
Conread position:
               
7-264
               

               
Cow position:
               
chr11:30253380-30253635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
8-242
               

               
Cow position:
               
chr11:32452983-32453219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr11:67845419-67845183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr11:86876731-86876495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
51, 14
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chr11:24394470-24394710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
18, 35
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chr11:26069889-26069644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chr11:31863241-31863482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
9-255
               

               
Cow position:
               
chr11:71330747-71331000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
29, 214
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr11:19101341-19101087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr11:43513469-43513220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
100, 58
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr11:72309886-72309631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr11:57626897-57626663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
12, 174
               

               
Conread position:
               
10-255
               

               
Cow position:
               
chr11:9155995-9155756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
52, 11
               

               
Conread position:
               
10-255
               

               
Cow position:
               
chr11:28228616-28228367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
10-255
               

               
Cow position:
               
chr11:73134458-73134703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 111
               

               
Conread position:
               
10-261
               

               
Cow position:
               
chr11:11590118-11590375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
52, 26
               

               
Conread position:
               
10-264
               

               
Cow position:
               
chr11:26548680-26548940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
52, 21
               

               
Conread position:
               
11-181
               

               
Cow position:
               
chr11:26123775-26123599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-252
               

               
Cow position:
               
chr11:41169544-41169299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr11:10848604-10848859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr11:38834296-38834039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr11:53430879-53430626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr11:85392682-85392425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
12-255
               

               
Cow position:
               
chr11:21475273-21475521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
13-252
               

               
Cow position:
               
chr11:47759125-47758880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
15, 190
               

               
Conread position:
               
19-243
               

               
Cow position:
               
chr11:17547317-17547546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
19-252
               

               
Cow position:
               
chr11:66730240-66730480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
41, 18
               

               
Conread position:
               
21-259
               

               
Cow position:
               
chr11:7117579-7117818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
26-261
               

               
Cow position:
               
chr11:35894730-35894497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
215, 16
               

               
Conread position:
               
36-173
               

               
Cow position:
               
chr11:9215333-9215189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
36-217
               

               
Cow position:
               
chr11:12372661-12372474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
24, 180
               

               
Conread position:
               
36-259
               

               
Cow position:
               
chr11:17281305-17281072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
24, 183
               

               
Conread position:
               
36-261
               

               
Cow position:
               
chr11:4062727-4062503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
41-252
               

               
Cow position:
               
chr11:3856389-3856599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
41-259
               

               
Cow position:
               
chr11:87142762-87142988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 176
               

               
Conread position:
               
41-261
               

               
Cow position:
               
chr11:12357214-12356993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
42-261
               

               
Cow position:
               
chr11:39804911-39805143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 128
               

               
Conread position:
               
43-252
               

               
Cow position:
               
chr11:29231790-29231583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
43-264
               

               
Cow position:
               
chr11:34018197-34018414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
69, 11
               

               
Conread position:
               
50-204
               

               
Cow position:
               
chr11:40329788-40329633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
51-243
               

               
Cow position:
               
chr11:61399908-61399716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
57, 159
               

               
Conread position:
               
51-255
               

               
Cow position:
               
chr11:4268984-4268777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 168
               

               
Conread position:
               
58-216
               

               
Cow position:
               
chr11:33976871-33976715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 48
               

               
Conread position:
               
88-264
               

               
Cow position:
               
chr11:44155766-44155589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
93-224
               

               
Cow position:
               
chr11:49558074-49557943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
116-259
               

               
Cow position:
               
chr11:40405790-40405646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
127, 99
               

               
Conread position:
               
137-259
               

               
Cow position:
               
chr11:21470097-21470220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
108, 73
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr12:21253149-21252902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
107, 41
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr12:25262079-25261859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 95
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr12:21943174-21943415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chr12:8676660-8676394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
4-256
               

               
Cow position:
               
chr12:1888129-1887870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
31, 213
               

               
Conread position:
               
6-252
               

               
Cow position:
               
chr12:1776523-1776280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
7-242
               

               
Cow position:
               
chr12:22568315-22568080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr12:20996648-20996402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr12:48471446-48471202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr12:14660912-14660662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr12:24994525-24994275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr12:32654994-32655238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
101, 31
               

               
Conread position:
               
7-258
               

               
Cow position:
               
chr12:42606810-42606558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
101, 16
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr12:27931471-27931214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
13, 205
               

               
Conread position:
               
10-255
               

               
Cow position:
               
chr12:37560455-37560701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
12, 201
               

               
Conread position:
               
10-261
               

               
Cow position:
               
chr12:21210106-21210359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
35, 201
               

               
Conread position:
               
11-255
               

               
Cow position:
               
chr12:11099665-11099922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr12:1403946-1404193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
172, 49
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr12:6405197-6404943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr12:42858097-42857838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
12-243
               

               
Cow position:
               
chr12:3362380-3362610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
15, 20
               

               
Conread position:
               
12-264
               

               
Cow position:
               
chr12:30685183-30685432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
48, 84
               

               
Conread position:
               
13-261
               

               
Cow position:
               
chr12:27854524-27854269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
14-261
               

               
Cow position:
               
chr12:22204270-22204016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
16-255
               

               
Cow position:
               
chr12:21482554-21482789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
20-259
               

               
Cow position:
               
chr12:35345980-35346224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 192
               

               
Conread position:
               
23-192
               

               
Cow position:
               
chr12:34174568-34174742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 8
               

               
Conread position:
               
34-252
               

               
Cow position:
               
chr12:43913299-43913523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
23, 147
               

               
Conread position:
               
36-166
               

               
Cow position:
               
chr12:20844058-20844191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
36-233
               

               
Cow position:
               
chr12:17967274-17967480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
36-233
               

               
Cow position:
               
chr12:21092256-21092062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
74, 10
               

               
Conread position:
               
36-252
               

               
Cow position:
               
chr12:24433622-24433399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
24, 181
               

               
Conread position:
               
36-252
               

               
Cow position:
               
chr12:34174805-34175028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
24, 181
               

               
Conread position:
               
36-261
               

               
Cow position:
               
chr12:20461767-20461534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
26, 181
               

               
Conread position:
               
41-242
               

               
Cow position:
               
chr12:23140701-23140499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
67, 170
               

               
Conread position:
               
42-259
               

               
Cow position:
               
chr12:19870364-19870577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
42-261
               

               
Cow position:
               
chr12:25099000-25098779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
67-261
               

               
Cow position:
               
chr12:15950307-15950111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
43, 144
               

               
Conread position:
               
70-255
               

               
Cow position:
               
chr12:33042863-33043049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
41, 140
               

               
Conread position:
               
87-243
               

               
Cow position:
               
chr12:22519460-22519304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
21, 123
               

               
Conread position:
               
96-288
               

               
Cow position:
               
chr12:11581530-11581724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr13:11797499-11797239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 215
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr13:47575303-47575557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 33
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr13:25692883-25693092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr13:13326139-13326389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
4-259
               

               
Cow position:
               
chr13:48358840-48359100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr13:6358342-6358580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr13:11388216-11388453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr13:17309682-17309919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr13:21838980-21838751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr13:60468644-60468883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr13:31508128-31508372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
55, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr13:5500780-5500531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
15, 185
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr13:21697482-21697732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr13:31732675-31732428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr13:33524738-33524488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-257
               

               
Cow position:
               
chr13:16253298-16253041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr13:32984126-32983869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr13:35758503-35758756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-271
               

               
Cow position:
               
chr13:49974884-49975149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-280
               

               
Cow position:
               
chr13:20541038-20540759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 16
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr13:43590541-43590779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
8-261
               

               
Cow position:
               
chr13:6666921-6666663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
9-179
               

               
Cow position:
               
chr13:28860384-28860557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 14
               

               
Conread position:
               
9-255
               

               
Cow position:
               
chr13:31729673-31729435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
102, 24
               

               
Conread position:
               
9-255
               

               
Cow position:
               
chr13:34324356-34324110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr13:678973-679204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
12, 194
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr13:50193173-50192942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
10-252
               

               
Cow position:
               
chr13:50110675-50110920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
12, 201
               

               
Conread position:
               
10-255
               

               
Cow position:
               
chr13:60648583-60648338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
12, 201
               

               
Conread position:
               
11-213
               

               
Cow position:
               
chr13:4485011-4485216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-252
               

               
Cow position:
               
chr13:34938660-34938902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 25
               

               
Conread position:
               
11-259
               

               
Cow position:
               
chr13:11793866-11793604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
51, 211
               

               
Conread position:
               
11-259
               

               
Cow position:
               
chr13:42090471-42090219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr13:4942604-4942861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr13:31611089-31610841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr13:34041115-34040859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
12-243
               

               
Cow position:
               
chr13:42217463-42217226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
15, 20
               

               
Conread position:
               
12-261
               

               
Cow position:
               
chr13:13901087-13901342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
12-261
               

               
Cow position:
               
chr13:30304419-30304673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
12-261
               

               
Cow position:
               
chr13:34343125-34343382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
12-264
               

               
Cow position:
               
chr13:14186222-14186479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
62, 18
               

               
Conread position:
               
14-252
               

               
Cow position:
               
chr13:43981863-43981621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
16-240
               

               
Cow position:
               
chr13:3482599-3482379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 61
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr13:9045980-9046224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr13:33335091-33334844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
20-261
               

               
Cow position:
               
chr13:14401880-14401632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
20-261
               

               
Cow position:
               
chr13:32923908-32923658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
21-228
               

               
Cow position:
               
chr13:31690923-31690719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
34-181
               

               
Cow position:
               
chr13:34764596-34764446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
36-261
               

               
Cow position:
               
chr13:60423998-60424224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
34, 176
               

               
Conread position:
               
37-261
               

               
Cow position:
               
chr13:30654180-30653950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
72, 178
               

               
Conread position:
               
41-170
               

               
Cow position:
               
chr13:34908788-34908655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
41-259
               

               
Cow position:
               
chr13:15449899-15449675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
59, 139
               

               
Conread position:
               
50-261
               

               
Cow position:
               
chr13:32735931-32735716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 168
               

               
Conread position:
               
51-261
               

               
Cow position:
               
chr13:9298710-9298922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 165
               

               
Conread position:
               
63-255
               

               
Cow position:
               
chr13:34869248-34869440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
46, 147
               

               
Conread position:
               
92-259
               

               
Cow position:
               
chr13:36348831-36348662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
19, 119
               

               
Conread position:
               
97-251
               

               
Cow position:
               
chr13:5624436-5624283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
111-252
               

               
Cow position:
               
chr13:32547830-32547970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
144-259
               

               
Cow position:
               
chr13:53553167-53553054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr14:29223995-29223736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
59, 30
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr14:25693028-25693297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 104
               

               
Conread position:
               
2-255
               

               
Cow position:
               
chr14:45027916-45027659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr14:45188714-45188511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
106, 39
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr14:18417592-18417844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
7-171
               

               
Cow position:
               
chr14:13274695-13274866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
7-205
               

               
Cow position:
               
chr14:10147968-10148169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr14:45670942-45670704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr14:29046580-29046333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
35, 204
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr14:48601250-48601009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
238, 24
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr14:12124089-12123839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr14:30595260-30595011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr14:33678157-33678411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
21, 161
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr14:44290159-44290415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
102, 135
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr14:45710635-45710388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
104, 14
               

               
Conread position:
               
7-295
               

               
Cow position:
               
chr14:45207378-45207665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr14:9046676-9046909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
9-246
               

               
Cow position:
               
chr14:17759796-17759562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
163, 14
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chr14:191142-191384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
100, 207
               

               
Conread position:
               
9-259
               

               
Cow position:
               
chr14:19327168-19326913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
9-259
               

               
Cow position:
               
chr14:23256265-23256012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
13, 43
               

               
Conread position:
               
9-259
               

               
Cow position:
               
chr14:44552933-44553184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr14:16918623-16918370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr14:17687591-17687847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr14:16808225-16807992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr14:1659553-1659786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
12, 41
               

               
Conread position:
               
10-255
               

               
Cow position:
               
chr14:16342800-16342558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
98, 32
               

               
Conread position:
               
10-255
               

               
Cow position:
               
chr14:17490241-17489997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
44, 162
               

               
Conread position:
               
10-255
               

               
Cow position:
               
chr14:43559330-43559581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
52, 26
               

               
Conread position:
               
10-259
               

               
Cow position:
               
chr14:43556069-43556330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 67
               

               
Conread position:
               
11-210
               

               
Cow position:
               
chr14:23932685-23932889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
11-255
               

               
Cow position:
               
chr14:27978453-27978699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
11-260
               

               
Cow position:
               
chr14:5514025-5514278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-260
               

               
Cow position:
               
chr14:15274744-15274490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr14:5530152-5530409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr14:13304047-13304304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
12-259
               

               
Cow position:
               
chr14:751661-751914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
48, 90
               

               
Conread position:
               
12-259
               

               
Cow position:
               
chr14:12611506-12611759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 126
               

               
Conread position:
               
12-259
               

               
Cow position:
               
chr14:35425216-35425466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
15-261
               

               
Cow position:
               
chr14:13780050-13780303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
15-261
               

               
Cow position:
               
chr14:20783566-20783819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
16-252
               

               
Cow position:
               
chr14:11476193-11475952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr14:48253220-48252977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 175
               

               
Conread position:
               
20-239
               

               
Cow position:
               
chr14:32448059-32448281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
20-255
               

               
Cow position:
               
chr14:37225257-37225497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
21-239
               

               
Cow position:
               
chr14:14032130-14031916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 41
               

               
Conread position:
               
21-240
               

               
Cow position:
               
chr14:35930694-35930914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
23-243
               

               
Cow position:
               
chr14:2287373-2287596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
37, 8
               

               
Conread position:
               
23-261
               

               
Cow position:
               
chr14:22030343-22030098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
39, 8
               

               
Conread position:
               
24-220
               

               
Cow position:
               
chr14:37454838-37454639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
38, 77
               

               
Conread position:
               
36-252
               

               
Cow position:
               
chr14:48826396-48826615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
36-261
               

               
Cow position:
               
chr14:44380469-44380697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
37-261
               

               
Cow position:
               
chr14:45086343-45086572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
25, 77
               

               
Conread position:
               
42-252
               

               
Cow position:
               
chr14:40167549-40167335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
48-261
               

               
Cow position:
               
chr14:30660935-30660719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
80-261
               

               
Cow position:
               
chr14:45082284-45082466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
94-240
               

               
Cow position:
               
chr14:33392740-33392597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
97-233
               

               
Cow position:
               
chr14:46390444-46390308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 119
               

               
Conread position:
               
98-243
               

               
Cow position:
               
chr14:30583214-30583069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
109-261
               

               
Cow position:
               
chr14:13462655-13462807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
134, 101
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr15:5981443-5981704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 140
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr15:4672517-4672771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr15:4962717-4962955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr15:32067523-32067268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
4-257
               

               
Cow position:
               
chr15:8751483-8751739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 29
               

               
Conread position:
               
4-261
               

               
Cow position:
               
chr15:21664655-21664392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
4-261
               

               
Cow position:
               
chr15:32492800-32492534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
7-229
               

               
Cow position:
               
chr15:1773595-1773815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
57, 16
               

               
Conread position:
               
7-242
               

               
Cow position:
               
chr15:2646558-2646325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-242
               

               
Cow position:
               
chr15:25205913-25205678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr15:4197558-4197796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr15:6561678-6561916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr15:4686817-4687067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr15:14581269-14581024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 16
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr15:28489058-28488816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
101, 16
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr15:53410005-53410243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
102, 14
               

               
Conread position:
               
7-254
               

               
Cow position:
               
chr15:6613813-6614063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-254
               

               
Cow position:
               
chr15:24794915-24795159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr15:107092-107342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr15:2013650-2013902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr15:6383062-6382820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
102, 23
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr15:17036565-17036317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr15:35898685-35898435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr15:41659259-41659509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
7-259
               

               
Cow position:
               
chr15:5010540-5010285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr15:4386847-4387106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
55, 22
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr15:4766283-4766542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr15:7564088-7564346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr15:15346016-15345759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr15:18577809-18578062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
104, 35
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr15:19736964-19736708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
8-239
               

               
Cow position:
               
chr15:32479512-32479271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
12, 213
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr15:25653974-25653728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
8-255
               

               
Cow position:
               
chr15:32712330-32712578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
29, 203
               

               
Conread position:
               
8-259
               

               
Cow position:
               
chr15:33122470-33122725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
8-271
               

               
Cow position:
               
chr15:21450775-21451041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
53, 129
               

               
Conread position:
               
9-233
               

               
Cow position:
               
chr15:580520-580742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
100, 19
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr15:3260225-3259975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
100, 87
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr15:35752213-35751956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
9-261
               

               
Cow position:
               
chr15:51218816-51219073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
18, 118
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr15:58750-58980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr15:50148176-50148415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
12, 190
               

               
Conread position:
               
10-252
               

               
Cow position:
               
chr15:50122836-50122596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
10-260
               

               
Cow position:
               
chr15:3008747-3008498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 87
               

               
Conread position:
               
11-240
               

               
Cow position:
               
chr15:4951192-4951426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
11-250
               

               
Cow position:
               
chr15:7892255-7892011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
11-254
               

               
Cow position:
               
chr15:42531012-42531254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
57, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr15:2901169-2900911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr15:4726294-4726551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr15:4923238-4923494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr15:7838361-7838618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr15:20411690-20411945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr15:24296183-24296436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
11-264
               

               
Cow position:
               
chr15:6279571-6279826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 137
               

               
Conread position:
               
12-172
               

               
Cow position:
               
chr15:6485675-6485838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
12-243
               

               
Cow position:
               
chr15:4141642-4141408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
48, 99
               

               
Conread position:
               
12-255
               

               
Cow position:
               
chr15:4652468-4652711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
12-261
               

               
Cow position:
               
chr15:18331741-18331484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
12-262
               

               
Cow position:
               
chr15:35646586-35646334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
59, 86
               

               
Conread position:
               
12-274
               

               
Cow position:
               
chr15:611201-610924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 58
               

               
Conread position:
               
13-261
               

               
Cow position:
               
chr15:50869431-50869687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
14-261
               

               
Cow position:
               
chr15:6154831-6154577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr15:31359963-31360213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
11, 16
               

               
Conread position:
               
18-259
               

               
Cow position:
               
chr15:368548-368306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
20-261
               

               
Cow position:
               
chr15:329434-329682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
21-260
               

               
Cow position:
               
chr15:2077755-2077997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
23-255
               

               
Cow position:
               
chr15:9912127-9911891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
24-256
               

               
Cow position:
               
chr15:4679389-4679621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 146
               

               
Conread position:
               
36-210
               

               
Cow position:
               
chr15:1879128-1878950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
36-218
               

               
Cow position:
               
chr15:8100577-8100765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 181
               

               
Conread position:
               
36-252
               

               
Cow position:
               
chr15:10478409-10478190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
24, 119
               

               
Conread position:
               
36-255
               

               
Cow position:
               
chr15:53339337-53339564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
36-259
               

               
Cow position:
               
chr15:1767954-1768175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
25, 138
               

               
Conread position:
               
36-259
               

               
Cow position:
               
chr15:8698810-8698587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
16, 37
               

               
Conread position:
               
36-261
               

               
Cow position:
               
chr15:6590993-6590767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
36-264
               

               
Cow position:
               
chr15:1765434-1765668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
37-255
               

               
Cow position:
               
chr15:3890029-3890246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
38-243
               

               
Cow position:
               
chr15:6079864-6080072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 176
               

               
Conread position:
               
41-252
               

               
Cow position:
               
chr15:4916301-4916511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 27
               

               
Conread position:
               
41-257
               

               
Cow position:
               
chr15:51716542-51716765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
42-257
               

               
Cow position:
               
chr15:7929701-7929914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 142
               

               
Conread position:
               
43-240
               

               
Cow position:
               
chr15:35736926-35737122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
66, 12
               
43-259UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr15:36668833-36669051 (view  custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
19, 53
               
46-243UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr15:7235454-7235654 (view  custom track)

               
               
               
Alignm length:
202

               
               
               
Alignm identity:
150

               
               
               
Alignm E-value:
1e-33

               
               
               
Alignm gaps (pig, cow):
16, 168
50-220UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr15:1238821-1238991 (view  custom track)

               
               
               
Alignm length:
172

               
               
               
Alignm identity:
130

               
               
               
Alignm E-value:
7e-31

               
               
               
Alignm gaps (pig, cow):
59, 160

               
               
               Conread position:50-259
               
               
               Cow position:chr15:1299411-1299183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 178

               
               
               Conread position:55-257
               
               
               Cow position:chr15:51675856-51676067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):55, 162

               
               
               Conread position:62-255
               
               
               Cow position:chr15:7939587-7939777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:69-259
               
               
               Cow position:chr15:31859801-31859609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 142

               
               
               Conread position:97-252
               
               
               Cow position:chr15:6552598-6552443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 119

               
               
               Conread position:102-253
               
               
               Cow position:chr15:6329242-6329393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 109

               
               
               Conread position:115-255
               
               
               Cow position:chr15:1783533-1783672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1-259
               
               
               Cow position:chr16:28158311-28158572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:2-252
               
               
               Cow position:chr16:40557195-40556949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):107, 29

               
               
               Conread position:3-248
               
               
               Cow position:chr16:5871636-5871879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:3-261
               
               
               Cow position:chr16:27732632-27732375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):19, 5

               
               
               Conread position:4-240
               
               
               Cow position:chr16:34531041-34531271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-261
               
               
               Cow position:chr16:25442372-25442636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:6-205
               
               
               Cow position:chr16:10565031-10564833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:7-229
               
               
               Cow position:chr16:2238015-2237796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:7-242
               
               
               Cow position:chr16:27594256-27594493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-252
               
               
               Cow position:chr16:2482385-2482140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:7-255
               
               
               Cow position:chr16:3088455-3088205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr16:5527636-5527387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr16:5662588-5662838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr16:10374847-10374603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr16:19778900-19778653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr16:25086366-25086610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr16:29047771-29048021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):35, 211

               
               
               Conread position:7-255
               
               
               Cow position:chr16:43896511-43896263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):102, 209

               
               
               Conread position:7-259
               
               
               Cow position:chr16:25258552-25258807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-261
               
               
               Cow position:chr16:37480107-37479849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:8-252
               
               
               Cow position:chr16:33280-33520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:9-210
               
               
               Cow position:chr16:48911693-48911484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:9-242
               
               
               Cow position:chr16:25001543-25001308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):53, 190

               
               
               Conread position:9-255
               
               
               Cow position:chr16:20202724-20202974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:9-261
               
               
               Cow position:chr16:2410181-2409927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:9-261
               
               
               Cow position:chr16:23809108-23809361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:10-202
               
               
               Cow position:chr16:49255481-49255286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:10-255
               
               
               Cow position:chr16:16240537-16240295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:10-259
               
               
               Cow position:chr16:1860987-1861240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:10-261
               
               
               Cow position:chr16:7675699-7675451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:10-261
               
               
               Cow position:chr16:14665063-14664806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:10-261
               
               
               Cow position:chr16:15185828-15186085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:11-233
               
               
               Cow position:chr16:1432939-1433164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:11-252
               
               
               Cow position:chr16:9931486-9931729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:11-252
               
               
               Cow position:chr16:23984050-23984294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr16:838068-838319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr16:5485479-5485730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr16:10439008-10439265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr16:25456731-25456474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-205
               
               
               Cow position:chr16:47627895-47627702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:12-261
               
               
               Cow position:chr16:1566703-1566455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:12-261
               
               
               Cow position:chr16:8815355-8815101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:12-262
               
               
               Cow position:chr16:25342721-25342979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:13-259
               
               
               Cow position:chr16:51084909-51085162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:14-252
               
               
               Cow position:chr16:2726460-2726219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:19-238
               
               
               Cow position:chr16:16898211-16898435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):15, 196

               
               
               Conread position:19-261
               
               
               Cow position:chr16:55049144-55048900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 80

               
               
               Conread position:20-259
               
               
               Cow position:chr16:3330694-3330934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:20-259
               
               
               Cow position:chr16:49221149-49220913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:20-261
               
               
               Cow position:chr16:23535139-23534894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:21-259
               
               
               Cow position:chr16:23801385-23801139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 198

               
               
               Conread position:21-259
               
               
               Cow position:chr16:41685493-41685253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:36-226
               
               
               Cow position:chr16:29034718-29034908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):75, 175

               
               
               Conread position:36-233
               
               
               Cow position:chr16:16519995-16519794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:36-243
               
               
               Cow position:chr16:5119245-5119032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):23, 180

               
               
               Conread position:36-252
               
               
               Cow position:chr16:1959841-1959625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:36-256
               
               
               Cow position:chr16:32937296-32937514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:36-257
               
               
               Cow position:chr16:18667162-18667389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 133

               
               
               Conread position:36-257
               
               
               Cow position:chr16:49233706-49233487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):21, 64

               
               
               Conread position:41-213
               
               
               Cow position:chr16:53092266-53092441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:41-243
               
               
               Cow position:chr16:28196456-28196254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):69, 169

               
               
               Conread position:43-228
               
               
               Cow position:chr16:5890788-5890972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:43-259
               
               
               Cow position:chr16:18497529-18497311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:45-259
               
               
               Cow position:chr16:42735790-42735581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:50-259
               
               
               Cow position:chr16:28169528-28169317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):58, 160

               
               
               Conread position:71-264
               
               
               Cow position:chr16:27712367-27712175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:90-243
               
               
               Cow position:chr16:20193338-20193185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:99-252
               
               
               Cow position:chr16:23251127-23250974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):10, 119

               
               
               Conread position:106-252
               
               
               Cow position:chr16:4474755-4474610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:3-243
               
               
               Cow position:chr17:1704194-1704432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:3-255
               
               
               Cow position:chr17:4061428-4061675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 38

               
               
               Conread position:3-261
               
               
               Cow position:chr17:2077670-2077411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):89, 39

               
               
               Conread position:4-255
               
               
               Cow position:chr17:11086408-11086154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:4-261
               
               
               Cow position:chr17:24028685-24028421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:4-261
               
               
               Cow position:chr17:40806124-40806388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:6-259
               
               
               Cow position:chr17:16121258-16121027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):237, 15

               
               
               Conread position:7-241
               
               
               Cow position:chr17:9080097-9079861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:7-241
               
               
               Cow position:chr17:15437107-15437343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr17:733022-732783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:7-243
               
               
               Cow position:chr17:3654966-3654728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr17:13967250-13967487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr17:14936647-14936410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr17:15142032-15141784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr17:27793458-27793210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr17:39049538-39049788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr17:2263464-2263718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):101, 203

               
               
               Conread position:7-259
               
               
               Cow position:chr17:23323125-23322869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr17:24783485-24783741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr17:34157445-34157701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr17:42266991-42267235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):102, 24

               
               
               Conread position:7-262
               
               
               Cow position:chr17:20403742-20404001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:9-255
               
               
               Cow position:chr17:15326603-15326853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:11-210
               
               
               Cow position:chr17:2580946-2581151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr17:14240829-14241085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr17:15852017-15852274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-242
               
               
               Cow position:chr17:23038892-23039123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:13-261
               
               
               Cow position:chr17:3640580-3640324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:13-261
               
               
               Cow position:chr17:28027178-28026923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:14-261
               
               
               Cow position:chr17:6069871-6070124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:16-259
               
               
               Cow position:chr17:15372544-15372791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:16-259
               
               
               Cow position:chr17:20099147-20098898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:21-255
               
               
               Cow position:chr17:2246754-2246513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):17, 207

               
               
               Conread position:21-257
               
               
               Cow position:chr17:21418887-21419131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 134

               
               
               Conread position:24-252
               
               
               Cow position:chr17:1656532-1656312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:34-256
               
               
               Cow position:chr17:14039689-14039463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 88

               
               
               Conread position:36-252
               
               
               Cow position:chr17:8203287-8203502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:36-259
               
               
               Cow position:chr17:20086422-20086197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:36-259
               
               
               Cow position:chr17:29302104-29302336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 187

               
               
               Conread position:41-261
               
               
               Cow position:chr17:1786605-1786387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):69, 109

               
               
               Conread position:43-255
               
               
               Cow position:chr17:182935-183144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:43-259
               
               
               Cow position:chr17:22133627-22133845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:63-255
               
               
               Cow position:chr17:39821-40013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:70-243
               
               
               Cow position:chr17:17257302-17257129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:75-252
               
               
               Cow position:chr17:6121178-6121354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 135

               
               
               Conread position:92-255
               
               
               Cow position:chr17:2554865-2554702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 118

               
               
               Conread position:101-243
               
               
               Cow position:chr17:20415041-20414899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 107

               
               
               Conread position:108-242
               
               
               Cow position:chr17:19980709-19980576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:108-257
               
               
               Cow position:chr17:4346152-4346002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):135, 102

               
               
               Conread position:3-255
               
               
               Cow position:chr18:54004640-54004399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 39

               
               
               Conread position:7-210
               
               
               Cow position:chr18:41839274-41839079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:7-243
               
               
               Cow position:chr18:24617669-24617902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:7-252
               
               
               Cow position:chr18:19353898-19354145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-252
               
               
               Cow position:chr18:51695233-51695479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr18:27538394-27538644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-256
               
               
               Cow position:chr18:26245091-26244840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-262
               
               
               Cow position:chr18:5534542-5534796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:9-261
               
               
               Cow position:chr18:27988719-27988975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:10-261
               
               
               Cow position:chr18:51343218-51343472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:11-239
               
               
               Cow position:chr18:19485675-19485908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:11-255
               
               
               Cow position:chr18:29865078-29864829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-259
               
               
               Cow position:chr18:51461514-51461263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):11, 200

               
               
               Conread position:11-261
               
               
               Cow position:chr18:16089652-16089909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr18:23799182-23799433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:13-210
               
               
               Cow position:chr18:18852129-18852329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 80

               
               
               Conread position:14-243
               
               
               Cow position:chr18:25352796-25353028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:14-261
               
               
               Cow position:chr18:16175082-16174831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:16-261
               
               
               Cow position:chr18:51482391-51482643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):12, 87

               
               
               Conread position:20-255
               
               
               Cow position:chr18:14417508-14417748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:21-243
               
               
               Cow position:chr18:16392563-16392344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):71, 33

               
               
               Conread position:21-261
               
               
               Cow position:chr18:25921931-25922180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):17, 202

               
               
               Conread position:36-261
               
               
               Cow position:chr18:14131947-14132179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:36-294
               
               
               Cow position:chr18:33752254-33752518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 155

               
               
               Conread position:41-261
               
               
               Cow position:chr18:29238459-29238675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:43-228
               
               
               Cow position:chr18:25364737-25364921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:43-258
               
               
               Cow position:chr18:35054699-35054910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:63-252
               
               
               Cow position:chr18:40482586-40482775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):46, 153

               
               
               Conread position:84-252
               
               
               Cow position:chr18:32166313-32166145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 126

               
               
               Conread position:84-259
               
               
               Cow position:chr18:11273247-11273071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:106-261
               
               
               Cow position:chr18:52654449-52654604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):148, 109

               
               
               Conread position:1-259
               
               
               Cow position:chr19:3139500-3139762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:3-264
               
               
               Cow position:chr19:342764-343046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):19, 226

               
               
               Conread position:4-261
               
               
               Cow position:chr19:4387140-4387395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:4-261
               
               
               Cow position:chr19:5730383-5730638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:4-262
               
               
               Cow position:chr19:33943095-33943362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:7-242
               
               
               Cow position:chr19:39833-40068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):13, 190

               
               
               Conread position:7-242
               
               
               Cow position:chr19:1583788-1584025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr19:16319093-16318855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-252
               
               
               Cow position:chr19:774140-774387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-252
               
               
               Cow position:chr19:39667006-39666765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr19:166592-166344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr19:28595072-28595323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 79

               
               
               Conread position:7-257
               
               
               Cow position:chr19:173794-174049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 29

               
               
               Conread position:7-258
               
               
               Cow position:chr19:376176-375936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr19:5899973-5899718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:10-259
               
               
               Cow position:chr19:52150142-52149890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:10-261
               
               
               Cow position:chr19:40850922-40850674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:11-181
               
               
               Cow position:chr19:40815968-40815798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:11-233
               
               
               Cow position:chr19:32210538-32210308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:11-255
               
               
               Cow position:chr19:437902-437653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr19:892099-891845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr19:39184008-39183750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:12-255
               
               
               Cow position:chr19:7343607-7343853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:16-261
               
               
               Cow position:chr19:33874952-33875205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:19-252
               
               
               Cow position:chr19:40886195-40885959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:20-244
               
               
               Cow position:chr19:28580129-28579898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:20-252
               
               
               Cow position:chr19:206051-206290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):15, 206

               
               
               Conread position:20-252
               
               
               Cow position:chr19:39392057-39392292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:20-261
               
               
               Cow position:chr19:2272570-2272322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:21-204
               
               
               Cow position:chr19:27036088-27035909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 24

               
               
               Conread position:23-243
               
               
               Cow position:chr19:20106275-20106500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:24-197
               
               
               Cow position:chr19:50724096-50724273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:37-252
               
               
               Cow position:chr19:1587675-1587454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 102

               
               
               Conread position:75-259
               
               
               Cow position:chr19:265260-265444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:80-215
               
               
               Cow position:chr19:3174995-3175131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:132-259
               
               
               Cow position:chr19:256951-257077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):112, 78

               
               
               Conread position:1-251
               
               
               Cow position:chr2:12328099-12328362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):7, 36

               
               
               Conread position:1-251
               
               
               Cow position:chr2:24471661-24471403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):61, 35

               
               
               Conread position:1-259
               
               
               Cow position:chr2:43445938-43446195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:1-261
               
               
               Cow position:chr2:12479294-12479024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:2-254
               
               
               Cow position:chr2:34563693-34563443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 36

               
               
               Conread position:2-258
               
               
               Cow position:chr2:32639912-32640176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:3-256
               
               
               Cow position:chr2:15575872-15575615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:3-261
               
               
               Cow position:chr2:24925549-24925802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):106, 28

               
               
               Conread position:3-261
               
               
               Cow position:chr2:24926398-24926651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):106, 28

               
               
               Conread position:4-261
               
               
               Cow position:chr2:2087198-2086932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 194

               
               
               Conread position:4-261
               
               
               Cow position:chr2:11158148-11157884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:4-261
               
               
               Cow position:chr2:13044735-13044471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:4-261
               
               
               Cow position:chr2:16901228-16901492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:6-239
               
               
               Cow position:chr2:780432-780195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:6-252
               
               
               Cow position:chr2:6005867-6005624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:7-232
               
               
               Cow position:chr2:51618239-51618469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:7-241
               
               
               Cow position:chr2:52617455-52617690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr2:364088-363851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr2:9958094-9957856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):14, 205

               
               
               Conread position:7-243
               
               
               Cow position:chr2:12696488-12696252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr2:14209844-14209606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):23, 205

               
               
               Conread position:7-243
               
               
               Cow position:chr2:26922406-26922644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr2:41048044-41047812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):101, 27

               
               
               Conread position:7-252
               
               
               Cow position:chr2:47037454-47037208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-252
               
               
               Cow position:chr2:57336525-57336771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):30, 205

               
               
               Conread position:7-255
               
               
               Cow position:chr2:3323586-3323336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr2:32065058-32064810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):37, 54

               
               
               Conread position:7-255
               
               
               Cow position:chr2:41687747-41687996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-258
               
               
               Cow position:chr2:39422604-39422857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-258
               
               
               Cow position:chr2:42361293-42361035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):55, 107

               
               
               Conread position:7-259
               
               
               Cow position:chr2:6962492-6962745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr2:10610666-10610410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr2:10731883-10731626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:7-260
               
               
               Cow position:chr2:574569-574826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 206

               
               
               Conread position:7-261
               
               
               Cow position:chr2:5903362-5903106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-261
               
               
               Cow position:chr2:10264427-10264174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:7-262
               
               
               Cow position:chr2:9189048-9188801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):102, 17

               
               
               Conread position:8-151
               
               
               Cow position:chr2:31300121-31300267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:8-159
               
               
               Cow position:chr2:44990325-44990167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-186
               
               
               Cow position:chr2:51397995-51397810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 24

               
               
               Conread position:8-204
               
               
               Cow position:chr2:42331905-42331711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:8-261
               
               
               Cow position:chr2:28794220-28794482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):101, 210

               
               
               Conread position:9-252
               
               
               Cow position:chr2:53330774-53331021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-254
               
               
               Cow position:chr2:16291664-16291914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 72

               
               
               Conread position:9-259
               
               
               Cow position:chr2:72688588-72688842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:9-261
               
               
               Cow position:chr2:281701-281450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):100, 83

               
               
               Conread position:9-261
               
               
               Cow position:chr2:25887569-25887312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-261
               
               
               Cow position:chr2:56888720-56888974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):100, 207

               
               
               Conread position:10-214
               
               
               Cow position:chr2:6880356-6880558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):102, 28

               
               
               Conread position:10-239
               
               
               Cow position:chr2:53540918-53541148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:10-252
               
               
               Cow position:chr2:25028319-25028079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:10-252
               
               
               Cow position:chr2:28639864-28639623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:10-259
               
               
               Cow position:chr2:14824025-14824270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):51, 143

               
               
               Conread position:10-259
               
               
               Cow position:chr2:32434338-32434095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:10-261
               
               
               Cow position:chr2:65937248-65936991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:10-262
               
               
               Cow position:chr2:55483170-55482922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:11-179
               
               
               Cow position:chr2:25743519-25743692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-242
               
               
               Cow position:chr2:9908894-9909130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:11-243
               
               
               Cow position:chr2:4402166-4401934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 181

               
               
               Conread position:11-260
               
               
               Cow position:chr2:81258157-81258413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr2:8119524-8119777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr2:19012343-19012592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr2:36029411-36029162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 25

               
               
               Conread position:11-261
               
               
               Cow position:chr2:36981369-36981626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr2:52063740-52063996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-205
               
               
               Cow position:chr2:51988808-51988608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-243
               
               
               Cow position:chr2:2411802-2411570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):15, 20

               
               
               Conread position:12-255
               
               
               Cow position:chr2:12223297-12223049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:13-252
               
               
               Cow position:chr2:22078887-22079131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:13-255
               
               
               Cow position:chr2:246899-246659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:13-255
               
               
               Cow position:chr2:11558831-11559078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):47, 28

               
               
               Conread position:13-261
               
               
               Cow position:chr2:42669725-42669464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:13-261
               
               
               Cow position:chr2:50078552-50078799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:14-232
               
               
               Cow position:chr2:54408641-54408432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:14-259
               
               
               Cow position:chr2:47811827-47812085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 218

               
               
               Conread position:14-261
               
               
               Cow position:chr2:10185245-10184993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:15-255
               
               
               Cow position:chr2:32656625-32656863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:15-259
               
               
               Cow position:chr2:12363002-12362747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:16-225
               
               
               Cow position:chr2:174584-174368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 207

               
               
               Conread position:16-240
               
               
               Cow position:chr2:19225856-19226083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:16-258
               
               
               Cow position:chr2:20891846-20891599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:16-260
               
               
               Cow position:chr2:54693932-54694172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:16-262
               
               
               Cow position:chr2:36976067-36976320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):22, 8

               
               
               Conread position:18-243
               
               
               Cow position:chr2:62729496-62729727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):19, 198

               
               
               Conread position:18-259
               
               
               Cow position:chr2:44934004-44933757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 199

               
               
               Conread position:20-252
               
               
               Cow position:chr2:78743552-78743784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:20-259
               
               
               Cow position:chr2:32458074-32457825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:20-261
               
               
               Cow position:chr2:50982155-50981913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:21-257
               
               
               Cow position:chr2:85081958-85081721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:21-259
               
               
               Cow position:chr2:36052048-36051791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):13, 207

               
               
               Conread position:33-259
               
               
               Cow position:chr2:54738498-54738721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:34-252
               
               
               Cow position:chr2:45938695-45938475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 178

               
               
               Conread position:36-259
               
               
               Cow position:chr2:16074535-16074305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):24, 181

               
               
               Conread position:37-255
               
               
               Cow position:chr2:34052163-34052391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):25, 180

               
               
               Conread position:39-252
               
               
               Cow position:chr2:18242890-18242679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):72, 21

               
               
               Conread position:41-255
               
               
               Cow position:chr2:47602250-47602035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 98

               
               
               Conread position:41-259
               
               
               Cow position:chr2:13553583-13553802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):69, 24

               
               
               Conread position:43-210
               
               
               Cow position:chr2:53555511-53555677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:43-255
               
               
               Cow position:chr2:59412696-59412484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:48-233
               
               
               Cow position:chr2:2206800-2206614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:50-185
               
               
               Cow position:chr2:62727588-62727722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:83-255
               
               
               Cow position:chr2:33082909-33082737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 128

               
               
               Conread position:98-252
               
               
               Cow position:chr2:210970-210817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 112

               
               
               Conread position:103-259
               
               
               Cow position:chr2:41154992-41155149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 88

               
               
               Conread position:103-263
               
               
               Cow position:chr2:44092448-44092610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 107

               
               
               Conread position:110-261
               
               
               Cow position:chr2:53005162-53005012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:130-243
               
               
               Cow position:chr2:25022005-25022117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:4-261
               
               
               Cow position:chr20:29950018-29950280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:7-243
               
               
               Cow position:chr20:20441454-20441216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr20:26054193-26053955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr20:30429768-30430007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr20:19439413-19439663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr20:21717923-21718181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-257
               
               
               Cow position:chr20:12436924-12436669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:7-259
               
               
               Cow position:chr20:8972680-8972425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr20:9547145-9547399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:7-259
               
               
               Cow position:chr20:24615405-24615158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-273
               
               
               Cow position:chr20:30386582-30386314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:9-259
               
               
               Cow position:chr20:824268-824520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):99, 201

               
               
               Conread position:11-210
               
               
               Cow position:chr20:12570001-12570211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-252
               
               
               Cow position:chr20:5536442-5536688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr20:13764393-13764650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr20:15293480-15293733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr20:21916135-21916392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr20:30687074-30687340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-255
               
               
               Cow position:chr20:27870706-27870955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:12-259
               
               
               Cow position:chr20:9344453-9344703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):49, 193

               
               
               Conread position:12-261
               
               
               Cow position:chr20:28162323-28162580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:12-262
               
               
               Cow position:chr20:17660243-17659991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:14-257
               
               
               Cow position:chr20:13793531-13793777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:17-255
               
               
               Cow position:chr20:25849323-25849083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:21-243
               
               
               Cow position:chr20:21395421-21395646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:22-261
               
               
               Cow position:chr20:23468157-23467913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:36-146
               
               
               Cow position:chr20:19356286-19356397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:36-258
               
               
               Cow position:chr20:15066974-15067204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 185

               
               
               Conread position:41-242
               
               
               Cow position:chr20:13678310-13678109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):70, 170

               
               
               Conread position:43-259
               
               
               Cow position:chr20:12041959-12042175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):68, 84

               
               
               Conread position:45-255
               
               
               Cow position:chr20:25899224-25899435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):19, 166

               
               
               Conread position:61-259
               
               
               Cow position:chr20:10101464-10101269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:67-264
               
               
               Cow position:chr20:19341386-19341584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:86-259
               
               
               Cow position:chr20:19214557-19214732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):24, 125

               
               
               Conread position:1-206
               
               
               Cow position:chr21:28736800-28736999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):139, 18

               
               
               Conread position:2-259
               
               
               Cow position:chr21:2539475-2539214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):18, 212

               
               
               Conread position:4-243
               
               
               Cow position:chr21:26635556-26635310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 213

               
               
               Conread position:4-252
               
               
               Cow position:chr21:31250613-31250848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 58

               
               
               Conread position:4-261
               
               
               Cow position:chr21:30597867-30597604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:4-261
               
               
               Cow position:chr21:31514713-31514449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:7-170
               
               
               Cow position:chr21:34822601-34822435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-241
               
               
               Cow position:chr21:1286604-1286370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):104, 204

               
               
               Conread position:7-243
               
               
               Cow position:chr21:38802046-38802284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-252
               
               
               Cow position:chr21:37372844-37373081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):102, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr21:6414415-6414165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-256
               
               
               Cow position:chr21:33710758-33711009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr21:4588397-4588150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):55, 90

               
               
               Conread position:7-259
               
               
               Cow position:chr21:19612369-19612625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr21:26836796-26837055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):55, 29

               
               
               Conread position:8-259
               
               
               Cow position:chr21:26849416-26849164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):51, 88

               
               
               Conread position:9-252
               
               
               Cow position:chr21:2512462-2512704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:9-255
               
               
               Cow position:chr21:147537-147780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:9-259
               
               
               Cow position:chr21:2417823-2418069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 12

               
               
               Conread position:10-258
               
               
               Cow position:chr21:18816638-18816395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:10-259
               
               
               Cow position:chr21:11507227-11507479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):35, 201

               
               
               Conread position:11-259
               
               
               Cow position:chr21:361275-361537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 202

               
               
               Conread position:11-261
               
               
               Cow position:chr21:33253793-33254048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr21:34035374-34035125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:11-261
               
               
               Cow position:chr21:40270062-40269805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-252
               
               
               Cow position:chr21:10851690-10851933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:12-258
               
               
               Cow position:chr21:47942559-47942810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:13-239
               
               
               Cow position:chr21:21025078-21025297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 21

               
               
               Conread position:13-243
               
               
               Cow position:chr21:3780388-3780620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:14-252
               
               
               Cow position:chr21:5018753-5018995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:14-256
               
               
               Cow position:chr21:26649087-26648854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):14, 50

               
               
               Conread position:15-252
               
               
               Cow position:chr21:39426686-39426920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:16-258
               
               
               Cow position:chr21:1688544-1688306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:16-261
               
               
               Cow position:chr21:2880211-2879959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:16-261
               
               
               Cow position:chr21:47646945-47647199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:19-261
               
               
               Cow position:chr21:27069348-27069097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):15, 204

               
               
               Conread position:20-239
               
               
               Cow position:chr21:36979937-36980153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:20-255
               
               
               Cow position:chr21:28257045-28257280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:36-229
               
               
               Cow position:chr21:30675-30872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):26, 184

               
               
               Conread position:36-252
               
               
               Cow position:chr21:13298227-13298447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):26, 171

               
               
               Conread position:36-257
               
               
               Cow position:chr21:7591306-7591519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):74, 26

               
               
               Conread position:36-259
               
               
               Cow position:chr21:2712549-2712761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:36-261
               
               
               Cow position:chr21:44764315-44764088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:42-259
               
               
               Cow position:chr21:468546-468762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):69, 109

               
               
               Conread position:42-262
               
               
               Cow position:chr21:20742991-20742772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:43-218
               
               
               Cow position:chr21:28613976-28614146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:43-226
               
               
               Cow position:chr21:27285108-27285289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:43-259
               
               
               Cow position:chr21:9893621-9893833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):200, 18

               
               
               Conread position:60-252
               
               
               Cow position:chr21:27567410-27567600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:70-243
               
               
               Cow position:chr21:27150154-27150327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:107-252
               
               
               Cow position:chr21:35143980-35143835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):12, 109

               
               
               Conread position:1-238
               
               
               Cow position:chr22:30653957-30654194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:2-255
               
               
               Cow position:chr22:5313711-5313976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):25, 210

               
               
               Conread position:7-190
               
               
               Cow position:chr22:24951995-24952181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-242
               
               
               Cow position:chr22:10908398-10908161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr22:296884-297138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr22:538548-538796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:7-255
               
               
               Cow position:chr22:16202351-16202600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr22:21034952-21034702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr22:30677276-30677026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr22:32283244-32282994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr22:37268605-37268854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-258
               
               
               Cow position:chr22:6022090-6022343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-260
               
               
               Cow position:chr22:695054-695305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:7-261
               
               
               Cow position:chr22:45014789-45015040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):194, 16

               
               
               Conread position:7-262
               
               
               Cow position:chr22:13766795-13767053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:8-170
               
               
               Cow position:chr22:23509067-23508899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:8-243
               
               
               Cow position:chr22:20239398-20239163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:8-254
               
               
               Cow position:chr22:15852865-15853111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 35

               
               
               Conread position:8-255
               
               
               Cow position:chr22:44368044-44367794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:8-264
               
               
               Cow position:chr22:27308339-27308079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:9-164
               
               
               Cow position:chr22:18814923-18814767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:9-233
               
               
               Cow position:chr22:12730257-12730028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:9-243
               
               
               Cow position:chr22:44492494-44492724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:9-252
               
               
               Cow position:chr22:46580279-46580033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:9-259
               
               
               Cow position:chr22:13773959-13774208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:9-259
               
               
               Cow position:chr22:34601029-34601281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):53, 94

               
               
               Conread position:10-243
               
               
               Cow position:chr22:11803609-11803377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):98, 123

               
               
               Conread position:10-255
               
               
               Cow position:chr22:325743-325489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):12, 212

               
               
               Conread position:10-255
               
               
               Cow position:chr22:15955578-15955340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:10-261
               
               
               Cow position:chr22:3276915-3276661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:10-261
               
               
               Cow position:chr22:46585125-46584873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:11-237
               
               
               Cow position:chr22:1268314-1268083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):64, 210

               
               
               Conread position:11-260
               
               
               Cow position:chr22:21195059-21194803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:11-261
               
               
               Cow position:chr22:17327019-17326762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr22:42992614-42992865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr22:44397870-44398125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-226
               
               
               Cow position:chr22:35905944-35905727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:12-259
               
               
               Cow position:chr22:1281295-1281041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:12-259
               
               
               Cow position:chr22:23752267-23752015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):48, 139

               
               
               Conread position:12-259
               
               
               Cow position:chr22:29011834-29011581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 202

               
               
               Conread position:12-261
               
               
               Cow position:chr22:21590862-21591118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:12-261
               
               
               Cow position:chr22:31333609-31333353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:13-261
               
               
               Cow position:chr22:19142245-19141992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:14-259
               
               
               Cow position:chr22:559266-559015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:16-261
               
               
               Cow position:chr22:34169778-34170031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:16-261
               
               
               Cow position:chr22:37292235-37291982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:16-261
               
               
               Cow position:chr22:39468075-39467822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:17-252
               
               
               Cow position:chr22:14824256-14824016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:19-261
               
               
               Cow position:chr22:44935409-44935656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:19-264
               
               
               Cow position:chr22:29037118-29037360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:20-259
               
               
               Cow position:chr22:3803628-3803874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:20-261
               
               
               Cow position:chr22:6333157-6333403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:36-252
               
               
               Cow position:chr22:46614766-46614984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):22, 133

               
               
               Conread position:36-259
               
               
               Cow position:chr22:3305138-3304910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:36-259
               
               
               Cow position:chr22:8736880-8736656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 145

               
               
               Conread position:36-259
               
               
               Cow position:chr22:30129046-30129272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 178

               
               
               Conread position:36-259
               
               
               Cow position:chr22:30146695-30146921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 178

               
               
               Conread position:40-261
               
               
               Cow position:chr22:18605333-18605107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):6, 57

               
               
               Conread position:41-174
               
               
               Cow position:chr22:44478216-44478350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:41-252
               
               
               Cow position:chr22:1323627-1323835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:41-259
               
               
               Cow position:chr22:1880278-1880498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):67, 169

               
               
               Conread position:41-259
               
               
               Cow position:chr22:44518169-44517947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 171

               
               
               Conread position:42-252
               
               
               Cow position:chr22:2563283-2563075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):20, 152

               
               
               Conread position:42-259
               
               
               Cow position:chr22:37141988-37142204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:44-259
               
               
               Cow position:chr22:11807264-11807054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 148

               
               
               Conread position:46-259
               
               
               Cow position:chr22:8120300-8120088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:55-252
               
               
               Cow position:chr22:11033824-11034027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):22, 165

               
               
               Conread position:63-243
               
               
               Cow position:chr22:29499036-29499216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:70-218
               
               
               Cow position:chr22:14883967-14884112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 5

               
               
               Conread position:84-259
               
               
               Cow position:chr22:8880615-8880791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:95-288
               
               
               Cow position:chr22:40371573-40371763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):148, 68

               
               
               Conread position:96-259
               
               
               Cow position:chr22:37135292-37135455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):14, 113

               
               
               Conread position:107-243
               
               
               Cow position:chr22:29352914-29353049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:111-252
               
               
               Cow position:chr22:44459196-44459339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 106

               
               
               Conread position:114-259
               
               
               Cow position:chr22:6501366-6501222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 76

               
               
               Conread position:115-255
               
               
               Cow position:chr22:21336503-21336642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1-259
               
               
               Cow position:chr23:29450905-29450638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):54, 132

               
               
               Conread position:4-255
               
               
               Cow position:chr23:36029952-36029699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:4-261
               
               
               Cow position:chr23:3879660-3879394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:4-261
               
               
               Cow position:chr23:31164231-31164493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:7-210
               
               
               Cow position:chr23:38691925-38692131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-242
               
               
               Cow position:chr23:4435086-4435324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr23:23172212-23172448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr23:32351328-32351090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr23:41141793-41141555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr23:7314344-7314594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-257
               
               
               Cow position:chr23:1012379-1012133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):102, 84

               
               
               Conread position:7-257
               
               
               Cow position:chr23:22145872-22145618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:7-261
               
               
               Cow position:chr23:11780217-11780471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:8-252
               
               
               Cow position:chr23:21821868-21821638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:9-243
               
               
               Cow position:chr23:608153-608384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):99, 185

               
               
               Conread position:9-261
               
               
               Cow position:chr23:965060-964803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-261
               
               
               Cow position:chr23:1957603-1957852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:9-261
               
               
               Cow position:chr23:2759333-2759590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-264
               
               
               Cow position:chr23:4639157-4638903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:10-259
               
               
               Cow position:chr23:16055210-16055461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:10-261
               
               
               Cow position:chr23:20154791-20154535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:11-209
               
               
               Cow position:chr23:16497809-16497609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:11-240
               
               
               Cow position:chr23:14972521-14972287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:11-259
               
               
               Cow position:chr23:5873137-5872882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:11-261
               
               
               Cow position:chr23:19490986-19491243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr23:28304350-28304607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-179
               
               
               Cow position:chr23:4361433-4361599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:12-254
               
               
               Cow position:chr23:4818461-4818705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:13-255
               
               
               Cow position:chr23:22168077-22168324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:13-261
               
               
               Cow position:chr23:2793822-2793580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:15-252
               
               
               Cow position:chr23:2025641-2025401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:16-252
               
               
               Cow position:chr23:31648593-31648350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 201

               
               
               Conread position:16-261
               
               
               Cow position:chr23:14961512-14961260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:21-255
               
               
               Cow position:chr23:15178508-15178747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:21-261
               
               
               Cow position:chr23:15218443-15218196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:22-255
               
               
               Cow position:chr23:4513929-4514167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:22-261
               
               
               Cow position:chr23:4890132-4890374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:23-243
               
               
               Cow position:chr23:11714419-11714194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:26-258
               
               
               Cow position:chr23:2439833-2439600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 44

               
               
               Conread position:36-295
               
               
               Cow position:chr23:8287400-8287664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 180

               
               
               Conread position:41-252
               
               
               Cow position:chr23:15527047-15527257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):68, 175

               
               
               Conread position:42-295
               
               
               Cow position:chr23:25677826-25677579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:82-223
               
               
               Cow position:chr23:23283036-23283177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 129

               
               
               Conread position:91-255
               
               
               Cow position:chr23:3707923-3708087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):19, 120

               
               
               Conread position:102-259
               
               
               Cow position:chr23:1400674-1400519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:1-255
               
               
               Cow position:chr24:6658970-6658721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:4-252
               
               
               Cow position:chr24:9090536-9090291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:6-179
               
               
               Cow position:chr24:6436006-6436182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:7-180
               
               
               Cow position:chr24:16083257-16083080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-213
               
               
               Cow position:chr24:6407558-6407765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:7-228
               
               
               Cow position:chr24:17322216-17322437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 202

               
               
               Conread position:7-243
               
               
               Cow position:chr24:310391-310629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr24:7063066-7063302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr24:13233782-13234010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr24:23504336-23504098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr24:13044104-13043854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr24:13189703-13189937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:7-255
               
               
               Cow position:chr24:33934908-33935161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:7-255
               
               
               Cow position:chr24:44019032-44019282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr24:6323833-6323571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:7-260
               
               
               Cow position:chr24:6337907-6338162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:7-261
               
               
               Cow position:chr24:12204817-12204562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:7-261
               
               
               Cow position:chr24:14755522-14755779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:7-261
               
               
               Cow position:chr24:29188814-29189068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:7-264
               
               
               Cow position:chr24:12127584-12127326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):102, 32

               
               
               Conread position:8-242
               
               
               Cow position:chr24:6963226-6962990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:8-269
               
               
               Cow position:chr24:38639052-38639306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:9-167
               
               
               Cow position:chr24:6142597-6142756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:9-255
               
               
               Cow position:chr24:12149770-12149516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-259
               
               
               Cow position:chr24:7089473-7089221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:9-261
               
               
               Cow position:chr24:147087-146828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-261
               
               
               Cow position:chr24:19834929-19835188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:10-251
               
               
               Cow position:chr24:36558023-36557802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:10-261
               
               
               Cow position:chr24:5991698-5991443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:10-261
               
               
               Cow position:chr24:6023560-6023307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:10-261
               
               
               Cow position:chr24:6036514-6036769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:11-168
               
               
               Cow position:chr24:11151709-11151549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:11-239
               
               
               Cow position:chr24:36723353-36723585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):100, 20

               
               
               Conread position:11-242
               
               
               Cow position:chr24:9545579-9545815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-252
               
               
               Cow position:chr24:8606341-8606590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-255
               
               
               Cow position:chr24:12087724-12087973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-255
               
               
               Cow position:chr24:12334206-12333967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr24:14383103-14382849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-262
               
               
               Cow position:chr24:22972588-22972848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-255
               
               
               Cow position:chr24:13179491-13179248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:14-261
               
               
               Cow position:chr24:20286383-20286131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:15-259
               
               
               Cow position:chr24:19469072-19468829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):95, 68

               
               
               Conread position:21-261
               
               
               Cow position:chr24:38585593-38585354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):88, 26

               
               
               Conread position:24-239
               
               
               Cow position:chr24:35869040-35868827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:36-261
               
               
               Cow position:chr24:37199365-37199134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):26, 115

               
               
               Conread position:43-259
               
               
               Cow position:chr24:12238848-12239070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:93-261
               
               
               Cow position:chr24:40468781-40468952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):16, 125

               
               
               Conread position:94-255
               
               
               Cow position:chr24:12163844-12164005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 116

               
               
               Conread position:108-258
               
               
               Cow position:chr24:25438229-25438380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):133, 100

               
               
               Conread position:110-261
               
               
               Cow position:chr24:23094395-23094243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):133, 105

               
               
               Conread position:126-271
               
               
               Cow position:chr24:39678956-39679100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:3-255
               
               
               Cow position:chr25:11041828-11042083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:7-233
               
               
               Cow position:chr25:20773885-20773653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr25:13693182-13692944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr25:32581008-32581246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr25:13062224-13061974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr25:19339113-19338864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr25:19922030-19922276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr25:20346497-20346247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:8-255
               
               
               Cow position:chr25:20097910-20098154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:8-255
               
               
               Cow position:chr25:25508196-25508443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):101, 208

               
               
               Conread position:8-261
               
               
               Cow position:chr25:16924916-16924659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:9-255
               
               
               Cow position:chr25:12941184-12940937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-255
               
               
               Cow position:chr25:13782534-13782783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:10-163
               
               
               Cow position:chr25:18192270-18192115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:10-252
               
               
               Cow position:chr25:18305628-18305870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:11-239
               
               
               Cow position:chr25:22149028-22149261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-251
               
               
               Cow position:chr25:18273295-18273053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):45, 165

               
               
               Conread position:11-259
               
               
               Cow position:chr25:18486075-18485825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:11-259
               
               
               Cow position:chr25:18888257-18888002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr25:20631111-20631368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-262
               
               
               Cow position:chr25:34345509-34345259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:12-239
               
               
               Cow position:chr25:11931304-11931075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:15-255
               
               
               Cow position:chr25:27021105-27020862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:16-255
               
               
               Cow position:chr25:17588075-17587832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:36-259
               
               
               Cow position:chr25:33575424-33575198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):24, 176

               
               
               Conread position:36-288
               
               
               Cow position:chr25:17559054-17558793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 180

               
               
               Conread position:43-252
               
               
               Cow position:chr25:34238699-34238495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:44-233
               
               
               Cow position:chr25:12757597-12757407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):65, 166

               
               
               Conread position:58-259
               
               
               Cow position:chr25:35627905-35627706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:3-259
               
               
               Cow position:chr26:2350706-2350447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:4-261
               
               
               Cow position:chr26:30587881-30587617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:7-243
               
               
               Cow position:chr26:12587057-12586819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr26:30784244-30784480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):101, 203

               
               
               Conread position:7-243
               
               
               Cow position:chr26:33148378-33148140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr26:35369433-35369671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr26:28373732-28373481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr26:18853713-18853965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):101, 31

               
               
               Conread position:8-243
               
               
               Cow position:chr26:2200126-2200363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:8-255
               
               
               Cow position:chr26:34013158-34013404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:8-258
               
               
               Cow position:chr26:6805568-6805316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:9-250
               
               
               Cow position:chr26:4327945-4327701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:9-255
               
               
               Cow position:chr26:8086597-8086848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:10-243
               
               
               Cow position:chr26:8871334-8871568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:10-243
               
               
               Cow position:chr26:9113382-9113616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:10-262
               
               
               Cow position:chr26:4603664-4603405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:11-261
               
               
               Cow position:chr26:19350016-19349757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-262
               
               
               Cow position:chr26:14895444-14895701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:11-304
               
               
               Cow position:chr26:17325576-17325875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-243
               
               
               Cow position:chr26:3029341-3029104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 204

               
               
               Conread position:16-261
               
               
               Cow position:chr26:5676634-5676886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:16-261
               
               
               Cow position:chr26:6847945-6847704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:41-232
               
               
               Cow position:chr26:20265432-20265623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:43-233
               
               
               Cow position:chr26:21007672-21007866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:43-259
               
               
               Cow position:chr26:21825148-21824931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):67, 127

               
               
               Conread position:69-237
               
               
               Cow position:chr26:16725698-16725867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 142

               
               
               Conread position:92-264
               
               
               Cow position:chr26:9842824-9842653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):141, 14

               
               
               Conread position:149-258
               
               
               Cow position:chr26:27989626-27989516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):94, 61

               
               
               Conread position:4-261
               
               
               Cow position:chr27:27664428-27664691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:7-243
               
               
               Cow position:chr27:798128-797890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-246
               
               
               Cow position:chr27:1900599-1900358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr27:29056599-29056849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr27:26553986-26553746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:7-261
               
               
               Cow position:chr27:4980810-4981069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:8-259
               
               
               Cow position:chr27:3234085-3233827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:8-261
               
               
               Cow position:chr27:5912355-5912611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:9-243
               
               
               Cow position:chr27:16032963-16032726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:9-259
               
               
               Cow position:chr27:167486-167233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:9-261
               
               
               Cow position:chr27:9331177-9331431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 207

               
               
               Conread position:10-252
               
               
               Cow position:chr27:25803255-25803011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:10-259
               
               
               Cow position:chr27:1677129-1676878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:10-264
               
               
               Cow position:chr27:8735611-8735870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 149

               
               
               Conread position:11-255
               
               
               Cow position:chr27:8199248-8199497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr27:26326501-26326758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-259
               
               
               Cow position:chr27:15274626-15274375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:12-261
               
               
               Cow position:chr27:19524994-19525242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:15-261
               
               
               Cow position:chr27:15635898-15635646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:16-261
               
               
               Cow position:chr27:13898756-13899008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:20-261
               
               
               Cow position:chr27:9991764-9991519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:31-259
               
               
               Cow position:chr27:28893073-28893303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):7, 31

               
               
               Conread position:36-259
               
               
               Cow position:chr27:10327264-10327034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 185

               
               
               Conread position:38-221
               
               
               Cow position:chr27:16264579-16264392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:89-253
               
               
               Cow position:chr27:22732351-22732191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:93-261
               
               
               Cow position:chr27:15035584-15035413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 123

               
               
               Conread position:1-257
               
               
               Cow position:chr28:7028303-7028047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 45

               
               
               Conread position:4-252
               
               
               Cow position:chr28:7003473-7003725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:4-252
               
               
               Cow position:chr28:29821474-29821715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:7-191
               
               
               Cow position:chr28:9180100-9180279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:7-225
               
               
               Cow position:chr28:6786741-6786956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:7-243
               
               
               Cow position:chr28:1954843-1955076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr28:9288433-9288668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr28:24590340-24590577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr28:1459578-1459828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-258
               
               
               Cow position:chr28:17381387-17381134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 29

               
               
               Conread position:7-259
               
               
               Cow position:chr28:5766214-5766470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr28:22231810-22231553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):30, 127

               
               
               Conread position:7-261
               
               
               Cow position:chr28:1506349-1506607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):13, 211

               
               
               Conread position:7-261
               
               
               Cow position:chr28:18518967-18518706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:7-261
               
               
               Cow position:chr28:33638025-33638287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:7-348
               
               
               Cow position:chr28:22041802-22041458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:8-182
               
               
               Cow position:chr28:5912780-5912608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 35

               
               
               Conread position:8-252
               
               
               Cow position:chr28:33253795-33254044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:8-255
               
               
               Cow position:chr28:7811895-7812153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:9-261
               
               
               Cow position:chr28:5750219-5749962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-261
               
               
               Cow position:chr28:13461458-13461709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):37, 52

               
               
               Conread position:10-210
               
               
               Cow position:chr28:10615513-10615314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):101, 83

               
               
               Conread position:10-243
               
               
               Cow position:chr28:6778454-6778220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:11-206
               
               
               Cow position:chr28:17665823-17665627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-255
               
               
               Cow position:chr28:3190768-3190519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:11-255
               
               
               Cow position:chr28:10580390-10580139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:11-259
               
               
               Cow position:chr28:5938972-5939227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr28:2085949-2086206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr28:8380521-8380778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr28:12408741-12408486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr28:14703899-14703642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr28:15034627-15034371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-240
               
               
               Cow position:chr28:17389886-17390119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:12-252
               
               
               Cow position:chr28:21360981-21361223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 199

               
               
               Conread position:12-259
               
               
               Cow position:chr28:5799775-5800031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 159

               
               
               Conread position:12-260
               
               
               Cow position:chr28:8719468-8719218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 201

               
               
               Conread position:12-261
               
               
               Cow position:chr28:32790907-32790658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:13-255
               
               
               Cow position:chr28:7059180-7058935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 200

               
               
               Conread position:13-259
               
               
               Cow position:chr28:25760959-25761203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:15-261
               
               
               Cow position:chr28:34595720-34595973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:16-171
               
               
               Cow position:chr28:5567612-5567774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:16-259
               
               
               Cow position:chr28:10496007-10495762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:16-261
               
               
               Cow position:chr28:12151814-12152067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:20-255
               
               
               Cow position:chr28:22259661-22259421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:20-261
               
               
               Cow position:chr28:1166398-1166153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:20-261
               
               
               Cow position:chr28:1813440-1813193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:20-261
               
               
               Cow position:chr28:7741925-7742174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:20-262
               
               
               Cow position:chr28:26424766-26424519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:21-261
               
               
               Cow position:chr28:784149-784398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):17, 202

               
               
               Conread position:36-252
               
               
               Cow position:chr28:1385901-1385678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:41-288
               
               
               Cow position:chr28:23023745-23023995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:43-239
               
               
               Cow position:chr28:21566967-21567157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:45-258
               
               
               Cow position:chr28:15684993-15685204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:49-255
               
               
               Cow position:chr28:24669125-24669330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):61, 91

               
               
               Conread position:57-259
               
               
               Cow position:chr28:31591094-31591298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):51, 134

               
               
               Conread position:95-259
               
               
               Cow position:chr28:10067489-10067321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 122

               
               
               Conread position:114-259
               
               
               Cow position:chr28:2117587-2117733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):127, 95

               
               
               Conread position:3-252
               
               
               Cow position:chr29:25931082-25930828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:4-262
               
               
               Cow position:chr29:16345654-16345918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:7-179
               
               
               Cow position:chr29:29502812-29502637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-229
               
               
               Cow position:chr29:27262269-27262041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr29:609201-608963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:7-243
               
               
               Cow position:chr29:19526839-19526601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr29:27979473-27979236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr29:32558304-32558066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr29:38207217-38206979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-252
               
               
               Cow position:chr29:19621830-19621579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):37, 47

               
               
               Conread position:7-255
               
               
               Cow position:chr29:10022885-10022635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr29:21431405-21431155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr29:27180306-27180056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr29:31182855-31183099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr29:13622411-13622155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr29:32287697-32287949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 111

               
               
               Conread position:8-255
               
               
               Cow position:chr29:20252610-20252862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:9-252
               
               
               Cow position:chr29:5236469-5236714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:9-261
               
               
               Cow position:chr29:2691614-2691867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:9-261
               
               
               Cow position:chr29:16024014-16024268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):100, 207

               
               
               Conread position:10-255
               
               
               Cow position:chr29:9641334-9641088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 202

               
               
               Conread position:10-261
               
               
               Cow position:chr29:19889035-19889289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:10-261
               
               
               Cow position:chr29:45205975-45206235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):99, 125

               
               
               Conread position:11-228
               
               
               Cow position:chr29:6213957-6214170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):98, 31

               
               
               Conread position:11-232
               
               
               Cow position:chr29:15997203-15996978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:11-252
               
               
               Cow position:chr29:14587367-14587613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:11-255
               
               
               Cow position:chr29:2101287-2101536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-255
               
               
               Cow position:chr29:13851425-13851181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:11-259
               
               
               Cow position:chr29:13583532-13583784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:11-261
               
               
               Cow position:chr29:409800-409557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):100, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr29:6264552-6264295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr29:13018149-13018395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:11-261
               
               
               Cow position:chr29:23977571-23977828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr29:39078263-39078007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-264
               
               
               Cow position:chr29:43324967-43325224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-230
               
               
               Cow position:chr29:5981260-5981049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):50, 101

               
               
               Conread position:13-239
               
               
               Cow position:chr29:2948925-2948699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:13-243
               
               
               Cow position:chr29:7845838-7846075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):15, 204

               
               
               Conread position:14-242
               
               
               Cow position:chr29:2747009-2746779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:14-261
               
               
               Cow position:chr29:3175993-3175749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:14-261
               
               
               Cow position:chr29:26163382-26163129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:15-261
               
               
               Cow position:chr29:34798359-34798107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:15-261
               
               
               Cow position:chr29:45461199-45461451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:16-255
               
               
               Cow position:chr29:47007-46764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:16-261
               
               
               Cow position:chr29:5959026-5959279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):19, 166

               
               
               Conread position:16-261
               
               
               Cow position:chr29:14210100-14209847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:16-261
               
               
               Cow position:chr29:40501555-40501302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:17-261
               
               
               Cow position:chr29:32541545-32541799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:19-259
               
               
               Cow position:chr29:647264-647510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):16, 163

               
               
               Conread position:20-259
               
               
               Cow position:chr29:32892240-32892477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:23-243
               
               
               Cow position:chr29:35298370-35298595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:28-259
               
               
               Cow position:chr29:27812558-27812786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:36-225
               
               
               Cow position:chr29:14084658-14084463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 181

               
               
               Conread position:36-238
               
               
               Cow position:chr29:14113018-14113222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:36-243
               
               
               Cow position:chr29:8664977-8665190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):26, 161

               
               
               Conread position:36-252
               
               
               Cow position:chr29:45624864-45625080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 97

               
               
               Conread position:36-259
               
               
               Cow position:chr29:16172630-16172405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:36-261
               
               
               Cow position:chr29:36634910-36634678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:38-261
               
               
               Cow position:chr29:2465402-2465171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):24, 179

               
               
               Conread position:42-248
               
               
               Cow position:chr29:19954108-19954311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):203, 28

               
               
               Conread position:70-261
               
               
               Cow position:chr29:8625696-8625490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):39, 160

               
               
               Conread position:88-217
               
               
               Cow position:chr29:3329140-3329269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:90-255
               
               
               Cow position:chr29:9082350-9082190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:102-255
               
               
               Cow position:chr29:17406670-17406821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:111-261
               
               
               Cow position:chr29:10645856-10645706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):143, 98

               
               
               Conread position:126-259
               
               
               Cow position:chr29:21422126-21421994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 84

               
               
               Conread position:1-257
               
               
               Cow position:chr3:48229152-48228899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:2-261
               
               
               Cow position:chr3:53516964-53517230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:3-243
               
               
               Cow position:chr3:56295540-56295786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):57, 213

               
               
               Conread position:4-259
               
               
               Cow position:chr3:20382392-20382654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):23, 28

               
               
               Conread position:4-261
               
               
               Cow position:chr3:72631421-72631677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:4-261
               
               
               Cow position:chr3:78026058-78025800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:4-273
               
               
               Cow position:chr3:21258153-21257885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:6-261
               
               
               Cow position:chr3:19880012-19880265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):102, 36

               
               
               Conread position:7-183
               
               
               Cow position:chr3:30330757-30330578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-241
               
               
               Cow position:chr3:47080047-47079811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr3:4287452-4287687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr3:74058889-74059126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-252
               
               
               Cow position:chr3:32621679-32621433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr3:2870151-2870401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr3:6783730-6783981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr3:44925425-44925675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr3:68872392-68872142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr3:2918832-2919083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr3:3840154-3839899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr3:7157357-7157100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr3:31416379-31416635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:7-261
               
               
               Cow position:chr3:18812861-18813121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-261
               
               
               Cow position:chr3:34029561-34029299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:8-207
               
               
               Cow position:chr3:65208546-65208751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:8-255
               
               
               Cow position:chr3:64026771-64026525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:8-259
               
               
               Cow position:chr3:2854082-2853833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:9-255
               
               
               Cow position:chr3:40824756-40825004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-261
               
               
               Cow position:chr3:2709500-2709249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:9-261
               
               
               Cow position:chr3:7478551-7478294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:9-261
               
               
               Cow position:chr3:30315912-30316167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 20

               
               
               Conread position:9-261
               
               
               Cow position:chr3:42448480-42448736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:10-241
               
               
               Cow position:chr3:7247900-7248131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:10-243
               
               
               Cow position:chr3:18860784-18861018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:10-243
               
               
               Cow position:chr3:68698606-68698374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):44, 201

               
               
               Conread position:10-252
               
               
               Cow position:chr3:37970413-37970656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 207

               
               
               Conread position:10-252
               
               
               Cow position:chr3:56327472-56327717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:10-255
               
               
               Cow position:chr3:18462466-18462233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:10-255
               
               
               Cow position:chr3:40338781-40338535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:10-255
               
               
               Cow position:chr3:56146670-56146917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:10-259
               
               
               Cow position:chr3:46859922-46859675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:10-261
               
               
               Cow position:chr3:45975874-45976120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):155, 19

               
               
               Conread position:11-205
               
               
               Cow position:chr3:33843465-33843266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:11-220
               
               
               Cow position:chr3:51938735-51938525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:11-255
               
               
               Cow position:chr3:30617556-30617311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:11-259
               
               
               Cow position:chr3:27864541-27864792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:11-261
               
               
               Cow position:chr3:23288970-23288712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr3:49136201-49135944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr3:69932470-69932213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-243
               
               
               Cow position:chr3:1742695-1742932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 204

               
               
               Conread position:12-243
               
               
               Cow position:chr3:2367973-2367738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):48, 119

               
               
               Conread position:12-243
               
               
               Cow position:chr3:41209238-41209002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):48, 204

               
               
               Conread position:12-255
               
               
               Cow position:chr3:45034103-45034352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):15, 20

               
               
               Conread position:12-259
               
               
               Cow position:chr3:19799808-19799560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:12-259
               
               
               Cow position:chr3:63240881-63240625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 206

               
               
               Conread position:12-259
               
               
               Cow position:chr3:64356602-64356347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:12-261
               
               
               Cow position:chr3:5993716-5993467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:13-261
               
               
               Cow position:chr3:66621564-66621817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:14-242
               
               
               Cow position:chr3:34090116-34089889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:14-261
               
               
               Cow position:chr3:36877285-36877039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:16-241
               
               
               Cow position:chr3:3524379-3524610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:16-252
               
               
               Cow position:chr3:47087660-47087886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:16-254
               
               
               Cow position:chr3:15054337-15054091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):94, 8

               
               
               Conread position:16-259
               
               
               Cow position:chr3:58948901-58949147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 197

               
               
               Conread position:16-261
               
               
               Cow position:chr3:5952819-5952566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:16-261
               
               
               Cow position:chr3:21181329-21181077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:19-243
               
               
               Cow position:chr3:34505978-34505752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):31, 193

               
               
               Conread position:20-252
               
               
               Cow position:chr3:57483353-57483116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:21-252
               
               
               Cow position:chr3:56100318-56100079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):14, 197

               
               
               Conread position:22-254
               
               
               Cow position:chr3:5884903-5885140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):40, 8

               
               
               Conread position:23-243
               
               
               Cow position:chr3:29329914-29329689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 8

               
               
               Conread position:23-243
               
               
               Cow position:chr3:29575748-29575523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:23-243
               
               
               Cow position:chr3:36863082-36862857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:24-233
               
               
               Cow position:chr3:46017424-46017623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:32-281
               
               
               Cow position:chr3:2906370-2906115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:36-255
               
               
               Cow position:chr3:32200405-32200629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:36-255
               
               
               Cow position:chr3:51364401-51364176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):24, 180

               
               
               Conread position:36-255
               
               
               Cow position:chr3:68891182-68890958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):24, 179

               
               
               Conread position:36-257
               
               
               Cow position:chr3:33634639-33634864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:36-261
               
               
               Cow position:chr3:24444712-24444480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:36-261
               
               
               Cow position:chr3:43191904-43191671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):26, 186

               
               
               Conread position:37-259
               
               
               Cow position:chr3:77424992-77425210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:41-259
               
               
               Cow position:chr3:6687189-6687406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 65

               
               
               Conread position:43-221
               
               
               Cow position:chr3:63002160-63001981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:43-226
               
               
               Cow position:chr3:27919829-27920011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:43-255
               
               
               Cow position:chr3:19945646-19945862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):64, 171

               
               
               Conread position:43-261
               
               
               Cow position:chr3:49543809-49543591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:44-259
               
               
               Cow position:chr3:6876778-6876569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:48-261
               
               
               Cow position:chr3:67769214-67769428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):14, 81

               
               
               Conread position:50-259
               
               
               Cow position:chr3:51857283-51857072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):58, 160

               
               
               Conread position:64-252
               
               
               Cow position:chr3:56338851-56338662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):45, 153

               
               
               Conread position:83-252
               
               
               Cow position:chr3:19940371-19940537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 108

               
               
               Conread position:86-259
               
               
               Cow position:chr3:15188253-15188428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 125

               
               
               Conread position:90-261
               
               
               Cow position:chr3:74851701-74851528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 119

               
               
               Conread position:107-255
               
               
               Cow position:chr3:58784690-58784543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:107-261
               
               
               Cow position:chr3:10242119-10242274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):136, 108

               
               
               Conread position:111-262
               
               
               Cow position:chr3:4029202-4029354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):132, 98

               
               
               Conread position:115-252
               
               
               Cow position:chr3:38868061-38868197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:117-252
               
               
               Cow position:chr3:29580085-29580220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 93

               
               
               Conread position:1-242
               
               
               Cow position:chr4:99051-98815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):107, 30

               
               
               Conread position:4-243
               
               
               Cow position:chr4:33022478-33022233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:4-254
               
               
               Cow position:chr4:26876623-26876373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:4-261
               
               
               Cow position:chr4:33494715-33494979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:7-210
               
               
               Cow position:chr4:51042120-51041920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:7-242
               
               
               Cow position:chr4:41960066-41960302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr4:5881325-5881559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr4:9355545-9355783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr4:32213335-32213576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:7-243
               
               
               Cow position:chr4:65665228-65665008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-252
               
               
               Cow position:chr4:27335097-27335349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr4:17502165-17501915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr4:17924798-17924545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:7-255
               
               
               Cow position:chr4:42405778-42406031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:7-258
               
               
               Cow position:chr4:60262990-60262746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):105, 23

               
               
               Conread position:7-259
               
               
               Cow position:chr4:5443659-5443403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr4:17092696-17092442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr4:41955929-41956185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-261
               
               
               Cow position:chr4:25598322-25598062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:7-264
               
               
               Cow position:chr4:16060445-16060705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:7-276
               
               
               Cow position:chr4:20067557-20067288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:8-252
               
               
               Cow position:chr4:20236231-20235986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:8-264
               
               
               Cow position:chr4:16361085-16361348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:8-288
               
               
               Cow position:chr4:9847040-9846755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:9-164
               
               
               Cow position:chr4:45106633-45106792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:9-243
               
               
               Cow position:chr4:3126980-3127215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 200

               
               
               Conread position:9-243
               
               
               Cow position:chr4:30472380-30472617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:9-255
               
               
               Cow position:chr4:160326-160573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 213

               
               
               Conread position:9-255
               
               
               Cow position:chr4:1929468-1929226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):99, 24

               
               
               Conread position:9-259
               
               
               Cow position:chr4:11109908-11109654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:9-261
               
               
               Cow position:chr4:43318468-43318212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:10-243
               
               
               Cow position:chr4:18338024-18338258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:10-252
               
               
               Cow position:chr4:33071663-33071430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:11-180
               
               
               Cow position:chr4:27300346-27300175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:11-253
               
               
               Cow position:chr4:36897543-36897789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:11-255
               
               
               Cow position:chr4:1952400-1952151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-255
               
               
               Cow position:chr4:6865340-6865092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:11-255
               
               
               Cow position:chr4:67682364-67682613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-257
               
               
               Cow position:chr4:16639777-16640028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-259
               
               
               Cow position:chr4:14819732-14819483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:11-259
               
               
               Cow position:chr4:18423349-18423100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:11-259
               
               
               Cow position:chr4:28832887-28833136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:11-261
               
               
               Cow position:chr4:57985159-57985415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-262
               
               
               Cow position:chr4:34178075-34177827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:12-242
               
               
               Cow position:chr4:14386988-14387225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:14-259
               
               
               Cow position:chr4:14755501-14755249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:15-261
               
               
               Cow position:chr4:357080-357329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:16-261
               
               
               Cow position:chr4:13494497-13494756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:16-265
               
               
               Cow position:chr4:12240053-12239796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):46, 206

               
               
               Conread position:19-261
               
               
               Cow position:chr4:10882723-10882972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:20-255
               
               
               Cow position:chr4:12588504-12588743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:21-259
               
               
               Cow position:chr4:8702739-8702975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 41

               
               
               Conread position:22-261
               
               
               Cow position:chr4:3356755-3356509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:24-261
               
               
               Cow position:chr4:43882285-43882528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:27-243
               
               
               Cow position:chr4:530607-530822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:36-224
               
               
               Cow position:chr4:54969907-54970091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:36-252
               
               
               Cow position:chr4:6489175-6488954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:36-252
               
               
               Cow position:chr4:64216480-64216274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:36-261
               
               
               Cow position:chr4:1049072-1048840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):26, 147

               
               
               Conread position:38-255
               
               
               Cow position:chr4:17244305-17244522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):70, 172

               
               
               Conread position:39-218
               
               
               Cow position:chr4:61986074-61985896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:46-259
               
               
               Cow position:chr4:14139582-14139793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 20

               
               
               Conread position:50-255
               
               
               Cow position:chr4:827419-827624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):58, 160

               
               
               Conread position:50-259
               
               
               Cow position:chr4:19005123-19004909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):8, 163

               
               
               Conread position:75-243
               
               
               Cow position:chr4:6267955-6267787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 135

               
               
               Conread position:79-252
               
               
               Cow position:chr4:20241759-20241931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 137

               
               
               Conread position:80-259
               
               
               Cow position:chr4:41191391-41191210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:87-261
               
               
               Cow position:chr4:46666170-46666345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):156, 7

               
               
               Conread position:109-259
               
               
               Cow position:chr4:43867465-43867616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):133, 101

               
               
               Conread position:116-259
               
               
               Cow position:chr4:68837720-68837575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 95

               
               
               Conread position:1-262
               
               
               Cow position:chr5:18885262-18885003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):110, 37

               
               
               Conread position:2-252
               
               
               Cow position:chr5:48807472-48807218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:3-259
               
               
               Cow position:chr5:7142794-7142548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:3-261
               
               
               Cow position:chr5:3787199-3787464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:4-243
               
               
               Cow position:chr5:59061899-59062143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:4-255
               
               
               Cow position:chr5:51744545-51744794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:4-261
               
               
               Cow position:chr5:4070482-4070743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):70, 16

               
               
               Conread position:7-164
               
               
               Cow position:chr5:4017929-4017769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-188
               
               
               Cow position:chr5:27908002-27907819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-226
               
               
               Cow position:chr5:4386506-4386716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:7-241
               
               
               Cow position:chr5:46777662-46777898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-242
               
               
               Cow position:chr5:23959061-23958824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr5:4684535-4684298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr5:4756914-4756676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr5:6587319-6587081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):16, 205

               
               
               Conread position:7-243
               
               
               Cow position:chr5:35301367-35301605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr5:40131333-40131095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr5:58197285-58197523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-252
               
               
               Cow position:chr5:3965718-3965969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-252
               
               
               Cow position:chr5:10774994-10774747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-252
               
               
               Cow position:chr5:10842112-10841867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:7-252
               
               
               Cow position:chr5:26077923-26077679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):38, 204

               
               
               Conread position:7-252
               
               
               Cow position:chr5:47829808-47829562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):15, 203

               
               
               Conread position:7-255
               
               
               Cow position:chr5:307144-306895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr5:10813481-10813231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr5:26184127-26184378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):53, 29

               
               
               Conread position:7-255
               
               
               Cow position:chr5:41376585-41376335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr5:987799-987543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr5:27197878-27198133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr5:32774034-32774290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr5:41960477-41960232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:7-261
               
               
               Cow position:chr5:6153630-6153373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:7-261
               
               
               Cow position:chr5:76096323-76096580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:8-181
               
               
               Cow position:chr5:32952164-32952340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:8-259
               
               
               Cow position:chr5:7810979-7810725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:9-261
               
               
               Cow position:chr5:10855547-10855291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-261
               
               
               Cow position:chr5:24295888-24296137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):234, 22

               
               
               Conread position:10-250
               
               
               Cow position:chr5:2459256-2459497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:10-259
               
               
               Cow position:chr5:12731441-12731190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:10-259
               
               
               Cow position:chr5:31707836-31708088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):12, 202

               
               
               Conread position:10-260
               
               
               Cow position:chr5:23831048-23830795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):27, 162

               
               
               Conread position:11-239
               
               
               Cow position:chr5:24152039-24152271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 204

               
               
               Conread position:11-252
               
               
               Cow position:chr5:37733619-37733864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr5:3502838-3502580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr5:10920109-10920362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:12-255
               
               
               Cow position:chr5:46737319-46737075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:12-255
               
               
               Cow position:chr5:50870891-50871126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:12-259
               
               
               Cow position:chr5:18121212-18120957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):50, 204

               
               
               Conread position:12-259
               
               
               Cow position:chr5:54620315-54620569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:12-264
               
               
               Cow position:chr5:18560136-18559878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:13-255
               
               
               Cow position:chr5:2975066-2975309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):9, 198

               
               
               Conread position:13-261
               
               
               Cow position:chr5:57816419-57816166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:14-209
               
               
               Cow position:chr5:46004599-46004402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:14-255
               
               
               Cow position:chr5:59283589-59283835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:14-261
               
               
               Cow position:chr5:57481266-57481012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:14-261
               
               
               Cow position:chr5:64780741-64780487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:15-252
               
               
               Cow position:chr5:34190187-34190439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):47, 187

               
               
               Conread position:15-252
               
               
               Cow position:chr5:73487793-73487552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:16-192
               
               
               Cow position:chr5:49519822-49520005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:16-255
               
               
               Cow position:chr5:23755203-23754964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 175

               
               
               Conread position:16-259
               
               
               Cow position:chr5:23230258-23230504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:16-261
               
               
               Cow position:chr5:24099927-24100176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:17-259
               
               
               Cow position:chr5:5104492-5104740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:17-259
               
               
               Cow position:chr5:13046927-13047163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:17-262
               
               
               Cow position:chr5:41527527-41527270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):13, 206

               
               
               Conread position:19-261
               
               
               Cow position:chr5:2915712-2915961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:21-243
               
               
               Cow position:chr5:18665045-18665272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):39, 195

               
               
               Conread position:21-243
               
               
               Cow position:chr5:46808582-46808810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):39, 195

               
               
               Conread position:23-243
               
               
               Cow position:chr5:31122305-31122080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:24-243
               
               
               Cow position:chr5:1340758-1340539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:24-260
               
               
               Cow position:chr5:46669205-46669458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):14, 208

               
               
               Conread position:24-261
               
               
               Cow position:chr5:7275115-7275358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):14, 178

               
               
               Conread position:34-227
               
               
               Cow position:chr5:7227152-7227339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 82

               
               
               Conread position:36-239
               
               
               Cow position:chr5:45701604-45701812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):24, 180

               
               
               Conread position:36-259
               
               
               Cow position:chr5:18274049-18274273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:36-259
               
               
               Cow position:chr5:31100135-31099911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 69

               
               
               Conread position:36-259
               
               
               Cow position:chr5:37378420-37378651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):23, 180

               
               
               Conread position:36-259
               
               
               Cow position:chr5:49757413-49757184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):23, 113

               
               
               Conread position:41-259
               
               
               Cow position:chr5:23686614-23686396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 173

               
               
               Conread position:43-239
               
               
               Cow position:chr5:15375993-15376188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:44-252
               
               
               Cow position:chr5:12681742-12681533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 6

               
               
               Conread position:52-255
               
               
               Cow position:chr5:34697967-34698169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:54-259
               
               
               Cow position:chr5:54860655-54860450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):57, 43

               
               
               Conread position:63-243
               
               
               Cow position:chr5:20108228-20108408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:81-251
               
               
               Cow position:chr5:1228134-1228307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 133

               
               
               Conread position:114-252
               
               
               Cow position:chr5:12642056-12641920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr6:59594321-59594570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:2-255
               
               
               Cow position:chr6:8203587-8203846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:3-179
               
               
               Cow position:chr6:13105432-13105616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:3-252
               
               
               Cow position:chr6:2577377-2577613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):59, 110

               
               
               Conread position:3-261
               
               
               Cow position:chr6:65907380-65907123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 5

               
               
               Conread position:4-224
               
               
               Cow position:chr6:20559706-20559485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:4-252
               
               
               Cow position:chr6:6158117-6158362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:5-252
               
               
               Cow position:chr6:28170315-28170562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:6-259
               
               
               Cow position:chr6:50636276-50636533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 207

               
               
               Conread position:6-261
               
               
               Cow position:chr6:476943-477204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):21, 213

               
               
               Conread position:6-261
               
               
               Cow position:chr6:15478575-15478836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):53, 193

               
               
               Conread position:7-180
               
               
               Cow position:chr6:68028332-68028508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr6:1409976-1409737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr6:2376091-2376319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):101, 35

               
               
               Conread position:7-243
               
               
               Cow position:chr6:2877277-2877039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr6:5749331-5749569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr6:11871248-11871010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr6:28703303-28703065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr6:45587358-45587592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr6:65820563-65820326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:7-255
               
               
               Cow position:chr6:39910745-39910988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):101, 35

               
               
               Conread position:7-255
               
               
               Cow position:chr6:40379224-40378975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr6:47047774-47047524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr6:7139934-7139678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr6:13309972-13309716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr6:44002080-44002334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr6:59617503-59617753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-261
               
               
               Cow position:chr6:15139770-15139509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:7-261
               
               
               Cow position:chr6:27528605-27528355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):102, 24

               
               
               Conread position:7-261
               
               
               Cow position:chr6:43792162-43791904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:8-217
               
               
               Cow position:chr6:13945320-13945529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:8-243
               
               
               Cow position:chr6:40276494-40276727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):100, 30

               
               
               Conread position:8-252
               
               
               Cow position:chr6:64717727-64717973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:8-260
               
               
               Cow position:chr6:3888106-3887854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:9-207
               
               
               Cow position:chr6:28134317-28134518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):101, 29

               
               
               Conread position:9-240
               
               
               Cow position:chr6:12664912-12664679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:9-243
               
               
               Cow position:chr6:55541848-55541611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:9-252
               
               
               Cow position:chr6:915043-915284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:9-259
               
               
               Cow position:chr6:10645123-10645382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-259
               
               
               Cow position:chr6:38272977-38273231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:9-259
               
               
               Cow position:chr6:52694435-52694688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):53, 12

               
               
               Conread position:9-261
               
               
               Cow position:chr6:28104456-28104200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:9-261
               
               
               Cow position:chr6:34890715-34890462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:9-261
               
               
               Cow position:chr6:41228853-41229108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):36, 208

               
               
               Conread position:9-264
               
               
               Cow position:chr6:66233214-66233467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:10-217
               
               
               Cow position:chr6:16053520-16053728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:10-242
               
               
               Cow position:chr6:3150645-3150879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):27, 202

               
               
               Conread position:10-243
               
               
               Cow position:chr6:28490156-28489925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:10-243
               
               
               Cow position:chr6:44149137-44148904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 88

               
               
               Conread position:10-259
               
               
               Cow position:chr6:26669451-26669200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):12, 124

               
               
               Conread position:10-261
               
               
               Cow position:chr6:39333466-39333207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:11-255
               
               
               Cow position:chr6:44262067-44261823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:11-259
               
               
               Cow position:chr6:10250197-10249945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:11-261
               
               
               Cow position:chr6:50196-49941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr6:5948374-5948115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr6:25215625-25215880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:11-261
               
               
               Cow position:chr6:25792349-25792093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr6:30273486-30273229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr6:51715940-51716197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr6:58028134-58028391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr6:65843023-65843280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-264
               
               
               Cow position:chr6:24240815-24241072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-243
               
               
               Cow position:chr6:27170988-27171225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):48, 204

               
               
               Conread position:12-243
               
               
               Cow position:chr6:40326826-40327063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):48, 204

               
               
               Conread position:12-261
               
               
               Cow position:chr6:66745400-66745657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:12-261
               
               
               Cow position:chr6:67265291-67265548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:13-259
               
               
               Cow position:chr6:47625470-47625724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):13, 41

               
               
               Conread position:13-261
               
               
               Cow position:chr6:3487011-3486760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:13-261
               
               
               Cow position:chr6:8759888-8759633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:13-261
               
               
               Cow position:chr6:36528620-36528862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:14-255
               
               
               Cow position:chr6:27375511-27375266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:14-261
               
               
               Cow position:chr6:1821216-1820964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:15-261
               
               
               Cow position:chr6:35875301-35875046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:15-264
               
               
               Cow position:chr6:184131-183875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:16-228
               
               
               Cow position:chr6:1381925-1381710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:16-261
               
               
               Cow position:chr6:703621-703876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):16, 208

               
               
               Conread position:19-242
               
               
               Cow position:chr6:10679832-10680060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:19-245
               
               
               Cow position:chr6:21835774-21835550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:19-261
               
               
               Cow position:chr6:11723783-11723534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:20-252
               
               
               Cow position:chr6:58601893-58602133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 198

               
               
               Conread position:21-239
               
               
               Cow position:chr6:58066139-58066355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:21-262
               
               
               Cow position:chr6:35418891-35418640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):18, 198

               
               
               Conread position:23-261
               
               
               Cow position:chr6:43619143-43619388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:24-255
               
               
               Cow position:chr6:16591379-16591613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):14, 119

               
               
               Conread position:36-255
               
               
               Cow position:chr6:58460886-58460665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:36-259
               
               
               Cow position:chr6:17596864-17596633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):24, 161

               
               
               Conread position:36-300
               
               
               Cow position:chr6:10339206-10338931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:41-259
               
               
               Cow position:chr6:18973017-18972801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:43-255
               
               
               Cow position:chr6:3572039-3572251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):67, 167

               
               
               Conread position:43-255
               
               
               Cow position:chr6:57471113-57471324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:43-261
               
               
               Cow position:chr6:51731526-51731745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:56-233
               
               
               Cow position:chr6:14080757-14080936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 163

               
               
               Conread position:56-261
               
               
               Cow position:chr6:26777709-26777505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:61-192
               
               
               Cow position:chr6:34196808-34196942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:71-256
               
               
               Cow position:chr6:11269963-11269787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:77-260
               
               
               Cow position:chr6:18985569-18985742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:78-255
               
               
               Cow position:chr6:14390408-14390585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):30, 132

               
               
               Conread position:106-259
               
               
               Cow position:chr6:50111325-50111481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:110-261
               
               
               Cow position:chr6:17047853-17048005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):133, 105

               
               
               Conread position:110-272
               
               
               Cow position:chr6:3275631-3275470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1-238
               
               
               Cow position:chr7:45952123-45952360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:1-258
               
               
               Cow position:chr7:29368538-29368290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):152, 30

               
               
               Conread position:1-261
               
               
               Cow position:chr7:46747477-46747744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:2-261
               
               
               Cow position:chr7:55536438-55536170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:3-217
               
               
               Cow position:chr7:6647175-6646962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):105, 36

               
               
               Conread position:3-252
               
               
               Cow position:chr7:58337541-58337303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):31, 5

               
               
               Conread position:4-252
               
               
               Cow position:chr7:49730969-49731219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:4-257
               
               
               Cow position:chr7:65872119-65871859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:4-261
               
               
               Cow position:chr7:24806993-24806731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:6-261
               
               
               Cow position:chr7:8143483-8143222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:7-240
               
               
               Cow position:chr7:39132972-39133212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:7-243
               
               
               Cow position:chr7:14409-14176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr7:20514289-20514053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr7:43396917-43396678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr7:66070629-66070395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:7-252
               
               
               Cow position:chr7:1609139-1608892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-252
               
               
               Cow position:chr7:62445655-62445408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr7:7260018-7260265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr7:23250117-23250367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr7:52763783-52764032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):15, 204

               
               
               Conread position:7-255
               
               
               Cow position:chr7:55040989-55040739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-258
               
               
               Cow position:chr7:6627907-6627654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-258
               
               
               Cow position:chr7:6629802-6629549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-258
               
               
               Cow position:chr7:27100792-27100539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-258
               
               
               Cow position:chr7:33070913-33070660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-259
               
               
               Cow position:chr7:33311446-33311195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:7-259
               
               
               Cow position:chr7:51015756-51015992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):236, 14

               
               
               Conread position:7-261
               
               
               Cow position:chr7:61578995-61579256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:7-261
               
               
               Cow position:chr7:61809502-61809763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:8-255
               
               
               Cow position:chr7:49828834-49828589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:8-255
               
               
               Cow position:chr7:54581353-54581604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):20, 205

               
               
               Conread position:8-260
               
               
               Cow position:chr7:59685312-59685566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):102, 34

               
               
               Conread position:9-242
               
               
               Cow position:chr7:64239491-64239258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):100, 207

               
               
               Conread position:9-252
               
               
               Cow position:chr7:27788453-27788698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:9-252
               
               
               Cow position:chr7:37021541-37021791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:9-256
               
               
               Cow position:chr7:21311949-21312193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 129

               
               
               Conread position:9-257
               
               
               Cow position:chr7:24934056-24933808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 32

               
               
               Conread position:9-261
               
               
               Cow position:chr7:10429929-10429670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:10-243
               
               
               Cow position:chr7:48804936-48804701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:10-255
               
               
               Cow position:chr7:546340-546583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):12, 96

               
               
               Conread position:10-255
               
               
               Cow position:chr7:5261415-5261175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 26

               
               
               Conread position:11-213
               
               
               Cow position:chr7:1371148-1370940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-243
               
               
               Cow position:chr7:20557244-20557478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:11-252
               
               
               Cow position:chr7:13532415-13532169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-255
               
               
               Cow position:chr7:25441002-25441244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:11-259
               
               
               Cow position:chr7:11462641-11462386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:11-259
               
               
               Cow position:chr7:64350991-64351240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:11-261
               
               
               Cow position:chr7:444761-444504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr7:3126187-3126444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr7:14138096-14137839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr7:34487411-34487668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr7:45947655-45947397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr7:67800321-67800578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-179
               
               
               Cow position:chr7:3299670-3299495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:12-243
               
               
               Cow position:chr7:6721639-6721875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:12-243
               
               
               Cow position:chr7:20060985-20061221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 144

               
               
               Conread position:12-243
               
               
               Cow position:chr7:54649398-54649635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):15, 20

               
               
               Conread position:12-262
               
               
               Cow position:chr7:20773839-20773587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:12-295
               
               
               Cow position:chr7:996244-996524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:14-261
               
               
               Cow position:chr7:21986904-21987159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:16-261
               
               
               Cow position:chr7:18445255-18445001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):42, 199

               
               
               Conread position:16-261
               
               
               Cow position:chr7:21126175-21125924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:19-257
               
               
               Cow position:chr7:21233498-21233255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:20-238
               
               
               Cow position:chr7:67430072-67430295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:20-253
               
               
               Cow position:chr7:34416842-34416602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):42, 197

               
               
               Conread position:20-259
               
               
               Cow position:chr7:59680354-59680600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 196

               
               
               Conread position:21-261
               
               
               Cow position:chr7:39793369-39793611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):23, 40

               
               
               Conread position:23-243
               
               
               Cow position:chr7:8336873-8337098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:24-239
               
               
               Cow position:chr7:58995078-58995284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:25-261
               
               
               Cow position:chr7:39097033-39096787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):75, 194

               
               
               Conread position:29-255
               
               
               Cow position:chr7:60728939-60728710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):33, 152

               
               
               Conread position:36-252
               
               
               Cow position:chr7:63387253-63387476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 183

               
               
               Conread position:36-259
               
               
               Cow position:chr7:29471991-29472210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:36-262
               
               
               Cow position:chr7:3156995-3157230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):19, 182

               
               
               Conread position:36-264
               
               
               Cow position:chr7:33785786-33786022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):27, 180

               
               
               Conread position:41-259
               
               
               Cow position:chr7:33333096-33333316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):69, 170

               
               
               Conread position:41-259
               
               
               Cow position:chr7:42871675-42871895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 170

               
               
               Conread position:42-204
               
               
               Cow position:chr7:59875968-59876133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:46-258
               
               
               Cow position:chr7:40320824-40321018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):195, 14

               
               
               Conread position:50-207
               
               
               Cow position:chr7:66573453-66573294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:50-259
               
               
               Cow position:chr7:67676613-67676824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):34, 162

               
               
               Conread position:52-210
               
               
               Cow position:chr7:2966062-2966219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 44

               
               
               Conread position:67-230
               
               
               Cow position:chr7:28664208-28664046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:92-255
               
               
               Cow position:chr7:526530-526693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:108-256
               
               
               Cow position:chr7:33067126-33066977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 47

               
               
               Conread position:108-260
               
               
               Cow position:chr7:949141-949296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:109-243
               
               
               Cow position:chr7:40201554-40201687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:109-259
               
               
               Cow position:chr7:3121599-3121750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):134, 101

               
               
               Conread position:110-261
               
               
               Cow position:chr7:27711034-27711186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):133, 100

               
               
               Conread position:125-259
               
               
               Cow position:chr7:541411-541276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 91

               
               
               Conread position:1-259
               
               
               Cow position:chr8:48103522-48103781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:1-261
               
               
               Cow position:chr8:8400420-8400163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:1-261
               
               
               Cow position:chr8:60062083-60062350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:2-261
               
               
               Cow position:chr8:11834205-11834467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):18, 215

               
               
               Conread position:3-243
               
               
               Cow position:chr8:1320689-1320938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):18, 216

               
               
               Conread position:3-243
               
               
               Cow position:chr8:32436398-32436158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):19, 5

               
               
               Conread position:3-250
               
               
               Cow position:chr8:23134926-23134673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 5

               
               
               Conread position:3-261
               
               
               Cow position:chr8:50929430-50929164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:3-262
               
               
               Cow position:chr8:46218070-46217812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):110, 56

               
               
               Conread position:4-252
               
               
               Cow position:chr8:49218401-49218670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:4-260
               
               
               Cow position:chr8:23772317-23772573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:4-261
               
               
               Cow position:chr8:24914644-24914379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:4-261
               
               
               Cow position:chr8:38392304-38392568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:4-261
               
               
               Cow position:chr8:42485586-42485851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:4-261
               
               
               Cow position:chr8:59261268-59261007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:6-261
               
               
               Cow position:chr8:29008308-29008559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):103, 27

               
               
               Conread position:7-213
               
               
               Cow position:chr8:6764602-6764397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:7-242
               
               
               Cow position:chr8:14630980-14630743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr8:9736926-9737167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):17, 27

               
               
               Conread position:7-243
               
               
               Cow position:chr8:14256763-14257001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr8:21250909-21251147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr8:25377662-25377898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:7-243
               
               
               Cow position:chr8:34349354-34349592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr8:37655872-37655634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-252
               
               
               Cow position:chr8:12804465-12804707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:7-252
               
               
               Cow position:chr8:30155785-30156031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-253
               
               
               Cow position:chr8:1347567-1347319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):15, 205

               
               
               Conread position:7-255
               
               
               Cow position:chr8:2887436-2887685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chr8:8516914-8516665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):15, 204

               
               
               Conread position:7-255
               
               
               Cow position:chr8:37932779-37933029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr8:39820135-39820385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr8:51068314-51068064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr8:56884213-56884460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:7-258
               
               
               Cow position:chr8:50959926-50959675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:7-261
               
               
               Cow position:chr8:11824579-11824832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-261
               
               
               Cow position:chr8:12313723-12313462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:9-252
               
               
               Cow position:chr8:10741961-10741715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-252
               
               
               Cow position:chr8:36634825-36634579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-257
               
               
               Cow position:chr8:3748516-3748262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:10-258
               
               
               Cow position:chr8:32041079-32040826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:10-259
               
               
               Cow position:chr8:21157106-21156852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:10-259
               
               
               Cow position:chr8:58184907-58184676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):141, 11

               
               
               Conread position:10-261
               
               
               Cow position:chr8:45794068-45793814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:11-210
               
               
               Cow position:chr8:25438230-25438437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:11-211
               
               
               Cow position:chr8:17312740-17312944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:11-222
               
               
               Cow position:chr8:8912168-8912382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-252
               
               
               Cow position:chr8:30486717-30486483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:11-255
               
               
               Cow position:chr8:10750038-10750280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):29, 12

               
               
               Conread position:11-255
               
               
               Cow position:chr8:14927200-14926951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:11-259
               
               
               Cow position:chr8:2386872-2387128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):46, 205

               
               
               Conread position:11-259
               
               
               Cow position:chr8:41644004-41643747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 207

               
               
               Conread position:11-261
               
               
               Cow position:chr8:14590194-14589936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr8:33590067-33590324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr8:39194529-39194272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr8:50995471-50995728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-206
               
               
               Cow position:chr8:47490168-47490368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:12-233
               
               
               Cow position:chr8:42656301-42656081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:12-255
               
               
               Cow position:chr8:4688086-4688333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:12-256
               
               
               Cow position:chr8:33325736-33325988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:12-259
               
               
               Cow position:chr8:45691330-45691083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):97, 46

               
               
               Conread position:12-261
               
               
               Cow position:chr8:5017865-5018119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:12-261
               
               
               Cow position:chr8:7162582-7162838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:13-255
               
               
               Cow position:chr8:19332262-19332506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:13-258
               
               
               Cow position:chr8:24871098-24870858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:14-243
               
               
               Cow position:chr8:47068129-47067895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:14-261
               
               
               Cow position:chr8:3786317-3786571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:14-261
               
               
               Cow position:chr8:47660634-47660380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:15-225
               
               
               Cow position:chr8:9539019-9538806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):47, 199

               
               
               Conread position:16-259
               
               
               Cow position:chr8:2235292-2235046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 19

               
               
               Conread position:20-210
               
               
               Cow position:chr8:35543392-35543586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:20-240
               
               
               Cow position:chr8:8309913-8310129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:20-255
               
               
               Cow position:chr8:3855333-3855091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 203

               
               
               Conread position:21-255
               
               
               Cow position:chr8:25524086-25524325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:23-168
               
               
               Cow position:chr8:44846-44695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:23-243
               
               
               Cow position:chr8:14255879-14256104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:23-259
               
               
               Cow position:chr8:45145608-45145365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:36-240
               
               
               Cow position:chr8:34525520-34525314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:36-252
               
               
               Cow position:chr8:9639585-9639807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):26, 100

               
               
               Conread position:36-259
               
               
               Cow position:chr8:42158309-42158079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:36-259
               
               
               Cow position:chr8:47674553-47674775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:37-259
               
               
               Cow position:chr8:47887556-47887783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 177

               
               
               Conread position:38-252
               
               
               Cow position:chr8:44700695-44700912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:38-259
               
               
               Cow position:chr8:53428197-53428427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):24, 77

               
               
               Conread position:39-243
               
               
               Cow position:chr8:19052169-19052373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):70, 177

               
               
               Conread position:41-207
               
               
               Cow position:chr8:51666097-51665927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:41-259
               
               
               Cow position:chr8:38605460-38605238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):21, 173

               
               
               Conread position:48-255
               
               
               Cow position:chr8:1121101-1121310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):14, 166

               
               
               Conread position:67-261
               
               
               Cow position:chr8:29923606-29923409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:75-255
               
               
               Cow position:chr8:1152515-1152335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):33, 135

               
               
               Conread position:80-256
               
               
               Cow position:chr8:8904313-8904139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):161, 28

               
               
               Conread position:83-243
               
               
               Cow position:chr8:24190727-24190887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):25, 127

               
               
               Conread position:85-240
               
               
               Cow position:chr8:49856566-49856411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:108-255
               
               
               Cow position:chr8:40891510-40891364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:108-259
               
               
               Cow position:chr8:49295262-49295113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:121-259
               
               
               Cow position:chr8:45158726-45158587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):124, 41

               
               
               Conread position:1-259
               
               
               Cow position:chr9:44819469-44819728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 157

               
               
               Conread position:4-259
               
               
               Cow position:chr9:17063056-17062794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:4-259
               
               
               Cow position:chr9:54925867-54926127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 149

               
               
               Conread position:4-261
               
               
               Cow position:chr9:7060748-7060472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:4-262
               
               
               Cow position:chr9:28679299-28679557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):18, 207

               
               
               Conread position:6-261
               
               
               Cow position:chr9:28023132-28023394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 30

               
               
               Conread position:7-242
               
               
               Cow position:chr9:2871665-2871905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 25

               
               
               Conread position:7-242
               
               
               Cow position:chr9:50792049-50792288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr9:10976451-10976689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr9:25034225-25033987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chr9:27935716-27935954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chr9:30828077-30828315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-252
               
               
               Cow position:chr9:12913114-12913359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:7-255
               
               
               Cow position:chr9:44384599-44384849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:7-255
               
               
               Cow position:chr9:50093901-50093651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-261
               
               
               Cow position:chr9:37969873-37969615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:8-230
               
               
               Cow position:chr9:7158598-7158380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):197, 34

               
               
               Conread position:8-264
               
               
               Cow position:chr9:21410641-21410902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:9-213
               
               
               Cow position:chr9:10937935-10938137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):100, 63

               
               
               Conread position:9-243
               
               
               Cow position:chr9:59537435-59537675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:9-255
               
               
               Cow position:chr9:3309956-3310200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:9-255
               
               
               Cow position:chr9:30673717-30673965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-257
               
               
               Cow position:chr9:7004068-7004321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:9-261
               
               
               Cow position:chr9:5005325-5005579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):100, 207

               
               
               Conread position:10-243
               
               
               Cow position:chr9:25903865-25904095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):98, 117

               
               
               Conread position:10-252
               
               
               Cow position:chr9:32970281-32970524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:10-255
               
               
               Cow position:chr9:4942469-4942222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:10-255
               
               
               Cow position:chr9:45874857-45875103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:10-259
               
               
               Cow position:chr9:47043300-47043552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:11-207
               
               
               Cow position:chr9:22654916-22655117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:11-243
               
               
               Cow position:chr9:2212477-2212714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:11-260
               
               
               Cow position:chr9:6250638-6250877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):98, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr9:4533831-4534087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr9:17304638-17304382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr9:18508486-18508232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr9:19158196-19157938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chr9:51180842-51180586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-243
               
               
               Cow position:chr9:1074839-1074602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):48, 201

               
               
               Conread position:12-243
               
               
               Cow position:chr9:1250660-1250424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:12-243
               
               
               Cow position:chr9:64015333-64015098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:12-252
               
               
               Cow position:chr9:13474436-13474193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:12-255
               
               
               Cow position:chr9:26567943-26568181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:15-243
               
               
               Cow position:chr9:779479-779248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:16-222
               
               
               Cow position:chr9:29627411-29627197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:16-261
               
               
               Cow position:chr9:37161473-37161220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:17-228
               
               
               Cow position:chr9:1981601-1981819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:20-253
               
               
               Cow position:chr9:64026778-64027017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:20-255
               
               
               Cow position:chr9:38677490-38677730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:21-251
               
               
               Cow position:chr9:26101921-26101697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 90

               
               
               Conread position:21-255
               
               
               Cow position:chr9:2172286-2172528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):41, 203

               
               
               Conread position:21-261
               
               
               Cow position:chr9:27783527-27783779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):17, 205

               
               
               Conread position:21-261
               
               
               Cow position:chr9:31808921-31809169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 201

               
               
               Conread position:23-243
               
               
               Cow position:chr9:31066067-31066292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:23-253
               
               
               Cow position:chr9:22436306-22436536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):27, 162

               
               
               Conread position:24-261
               
               
               Cow position:chr9:17901226-17900983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):14, 150

               
               
               Conread position:36-252
               
               
               Cow position:chr9:827744-827527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:36-255
               
               
               Cow position:chr9:20939672-20939896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 165

               
               
               Conread position:36-258
               
               
               Cow position:chr9:28000882-28001115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):26, 183

               
               
               Conread position:38-252
               
               
               Cow position:chr9:29789325-29789106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):30, 179

               
               
               Conread position:43-244
               
               
               Cow position:chr9:1638229-1638425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:43-259
               
               
               Cow position:chr9:650652-650433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:50-261
               
               
               Cow position:chr9:1995027-1994813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):8, 167

               
               
               Conread position:58-259
               
               
               Cow position:chr9:30300840-30300637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):53, 158

               
               
               Conread position:77-256
               
               
               Cow position:chr9:54681338-54681158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:89-255
               
               
               Cow position:chr9:56303032-56302866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):19, 121

               
               
               Conread position:101-243
               
               
               Cow position:chr9:6709390-6709532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 109

               
               
               Conread position:108-259
               
               
               Cow position:chr9:3804793-3804941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):135, 74

               
               
               Conread position:108-261
               
               
               Cow position:chr9:29026483-29026331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):133, 85

               
               
               Conread position:114-259
               
               
               Cow position:chr9:2000703-2000557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):129, 94

               
               
               Conread position:114-259
               
               
               Cow position:chr9:43665112-43665259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):6, 97

               
               
               Conread position:126-264
               
               
               Cow position:chr9:47004189-47004328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):117, 89

               
               
               Conread position:3-255
               
               
               Cow position:chrX:30068605-30068349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):62, 97

               
               
               Conread position:3-261
               
               
               Cow position:chrX:23020533-23020796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):57, 210

               
               
               Conread position:4-227
               
               
               Cow position:chrX:21590218-21590445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 211

               
               
               Conread position:4-243
               
               
               Cow position:chrX:16811210-16810966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:4-252
               
               
               Cow position:chrX:27986594-27986341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:4-257
               
               
               Cow position:chrX:26757393-26757136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:4-261
               
               
               Cow position:chrX:9093880-9094144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:6-255
               
               
               Cow position:chrX:16780525-16780775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:7-216
               
               
               Cow position:chrX:23039884-23039670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:7-239
               
               
               Cow position:chrX:13396974-13396742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-239
               
               
               Cow position:chrX:17477179-17476948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):67, 16

               
               
               Conread position:7-241
               
               
               Cow position:chrX:3083894-3083659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-242
               
               
               Cow position:chrX:24324322-24324085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chrX:2561615-2561375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chrX:7753151-7753385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chrX:8589406-8589660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chrX:11423114-11423352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chrX:11463804-11463566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chrX:12653263-12653024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chrX:12667359-12667597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chrX:12702461-12702221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chrX:14460759-14460989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:7-243
               
               
               Cow position:chrX:14784229-14783993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chrX:18658565-18658327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chrX:20035157-20034920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:7-243
               
               
               Cow position:chrX:22567011-22566774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chrX:28506026-28505788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chrX:28664639-28664876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chrX:29172517-29172286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:7-243
               
               
               Cow position:chrX:30201494-30201256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-243
               
               
               Cow position:chrX:32065925-32065687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chrX:35531098-35531336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chrX:37015359-37015597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-243
               
               
               Cow position:chrX:37850374-37850612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-255
               
               
               Cow position:chrX:2977849-2977599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chrX:3374666-3374416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chrX:6241191-6240941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-255
               
               
               Cow position:chrX:13447583-13447333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chrX:14596090-14596340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):16, 205

               
               
               Conread position:7-255
               
               
               Cow position:chrX:17052788-17053044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-255
               
               
               Cow position:chrX:18452224-18452474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chrX:21580728-21580978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:7-255
               
               
               Cow position:chrX:29935842-29936091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chrX:30436087-30436337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chrX:37957812-37957562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-255
               
               
               Cow position:chrX:39562710-39562459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:7-258
               
               
               Cow position:chrX:2815241-2814985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-258
               
               
               Cow position:chrX:2858135-2857879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-258
               
               
               Cow position:chrX:29096083-29095828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-259
               
               
               Cow position:chrX:673961-673708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:7-259
               
               
               Cow position:chrX:17666551-17666299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:7-259
               
               
               Cow position:chrX:24771618-24771363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):15, 45

               
               
               Conread position:7-259
               
               
               Cow position:chrX:26398883-26398627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:7-259
               
               
               Cow position:chrX:27962097-27962329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):235, 16

               
               
               Conread position:7-261
               
               
               Cow position:chrX:5282537-5282283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:7-261
               
               
               Cow position:chrX:15125983-15125729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 31

               
               
               Conread position:7-264
               
               
               Cow position:chrX:13075452-13075199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-264
               
               
               Cow position:chrX:13096015-13095760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:7-264
               
               
               Cow position:chrX:30012242-30012503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:8-242
               
               
               Cow position:chrX:18220668-18220904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:8-243
               
               
               Cow position:chrX:5393603-5393366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:8-255
               
               
               Cow position:chrX:29097446-29097689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):101, 23

               
               
               Conread position:8-261
               
               
               Cow position:chrX:5296312-5296057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:9-181
               
               
               Cow position:chrX:21060013-21060186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:9-243
               
               
               Cow position:chrX:29792784-29792553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:9-255
               
               
               Cow position:chrX:16700945-16701184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):100, 33

               
               
               Conread position:9-258
               
               
               Cow position:chrX:2534826-2534585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):101, 62

               
               
               Conread position:9-258
               
               
               Cow position:chrX:16037198-16036949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:9-261
               
               
               Cow position:chrX:13411890-13411628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-261
               
               
               Cow position:chrX:18952430-18952176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:9-261
               
               
               Cow position:chrX:21830756-21831015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-261
               
               
               Cow position:chrX:23278265-23278524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:9-261
               
               
               Cow position:chrX:23389275-23389034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:9-261
               
               
               Cow position:chrX:27495958-27496211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-261
               
               
               Cow position:chrX:27592742-27592489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-261
               
               
               Cow position:chrX:30230853-30230604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):236, 92

               
               
               Conread position:9-261
               
               
               Cow position:chrX:39694892-39695145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:9-262
               
               
               Cow position:chrX:30182684-30182426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:9-262
               
               
               Cow position:chrX:36136322-36136072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:10-243
               
               
               Cow position:chrX:3419964-3419734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 204

               
               
               Conread position:10-243
               
               
               Cow position:chrX:3467397-3467166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:10-243
               
               
               Cow position:chrX:5322480-5322247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):34, 200

               
               
               Conread position:10-243
               
               
               Cow position:chrX:7094715-7094949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:10-243
               
               
               Cow position:chrX:9009582-9009817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:10-243
               
               
               Cow position:chrX:11148087-11147852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:10-243
               
               
               Cow position:chrX:15623257-15623023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:10-243
               
               
               Cow position:chrX:28757397-28757163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:10-255
               
               
               Cow position:chrX:16276896-16277142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):27, 201

               
               
               Conread position:10-255
               
               
               Cow position:chrX:29949352-29949118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:10-259
               
               
               Cow position:chrX:6281537-6281284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:10-259
               
               
               Cow position:chrX:16361873-16361621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):27, 207

               
               
               Conread position:10-259
               
               
               Cow position:chrX:41849965-41849725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 84

               
               
               Conread position:10-259
               
               
               Cow position:chrX:45418996-45418749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 26

               
               
               Conread position:10-261
               
               
               Cow position:chrX:15600391-15600646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:10-261
               
               
               Cow position:chrX:16684591-16684335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:10-261
               
               
               Cow position:chrX:26765955-26765697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):52, 180

               
               
               Conread position:10-264
               
               
               Cow position:chrX:31199801-31200060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:11-201
               
               
               Cow position:chrX:7031709-7031906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:11-252
               
               
               Cow position:chrX:972012-972263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:11-252
               
               
               Cow position:chrX:27084212-27084462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:11-261
               
               
               Cow position:chrX:321709-321966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chrX:1548223-1548481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:11-261
               
               
               Cow position:chrX:12481245-12481496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):26, 174

               
               
               Conread position:11-261
               
               
               Cow position:chrX:23454775-23454518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:12-242
               
               
               Cow position:chrX:27618887-27618652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:12-243
               
               
               Cow position:chrX:15979710-15979477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:12-252
               
               
               Cow position:chrX:28626386-28626156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):23, 17

               
               
               Conread position:12-260
               
               
               Cow position:chrX:28554880-28555133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:12-261
               
               
               Cow position:chrX:5356580-5356323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:12-264
               
               
               Cow position:chrX:12314514-12314261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:13-233
               
               
               Cow position:chrX:20695581-20695359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:13-261
               
               
               Cow position:chrX:12668496-12668245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:14-228
               
               
               Cow position:chrX:504963-504745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:14-239
               
               
               Cow position:chrX:30365554-30365329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:16-243
               
               
               Cow position:chrX:29886236-29886465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:16-255
               
               
               Cow position:chrX:28521356-28521112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:16-259
               
               
               Cow position:chrX:13055073-13055319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 53

               
               
               Conread position:16-261
               
               
               Cow position:chrX:26529212-26529465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:20-255
               
               
               Cow position:chrX:21224725-21224965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:20-259
               
               
               Cow position:chrX:12344191-12344440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:23-255
               
               
               Cow position:chrX:21753179-21752949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:23-256
               
               
               Cow position:chrX:27425066-27424828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):37, 8

               
               
               Conread position:23-259
               
               
               Cow position:chrX:42477559-42477316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:24-170
               
               
               Cow position:chrX:5335177-5335033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:25-255
               
               
               Cow position:chrX:21316708-21316943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):9, 123

               
               
               Conread position:26-252
               
               
               Cow position:chrX:21491416-21491648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 192

               
               
               Conread position:36-237
               
               
               Cow position:chrX:34219566-34219769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):25, 102

               
               
               Conread position:36-239
               
               
               Cow position:chrX:22127871-22127668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):27, 77

               
               
               Conread position:36-250
               
               
               Cow position:chrX:30138309-30138087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:36-261
               
               
               Cow position:chrX:21643634-21643412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 70

               
               
               Conread position:36-261
               
               
               Cow position:chrX:29910159-29909926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):24, 171

               
               
               Conread position:36-264
               
               
               Cow position:chrX:12184211-12184444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):26, 153

               
               
               Conread position:36-264
               
               
               Cow position:chrX:28586249-28586485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 178

               
               
               Conread position:43-218
               
               
               Cow position:chrX:36837984-36838158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:43-240
               
               
               Cow position:chrX:12836036-12835840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:43-255
               
               
               Cow position:chrX:21341684-21341896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:51-255
               
               
               Cow position:chrX:21791902-21792107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 160

               
               
               Conread position:63-255
               
               
               Cow position:chrX:27979517-27979325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):46, 153

               
               
               Conread position:69-252
               
               
               Cow position:chrX:5367843-5367660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 142

               
               
               Conread position:70-259
               
               
               Cow position:chrX:1942058-1941867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:79-264
               
               
               Cow position:chrX:47385300-47385114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):32, 133

               
               
               Conread position:81-262
               
               
               Cow position:chrX:16463624-16463805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 74

               
               
               Conread position:83-259
               
               
               Cow position:chrX:22817384-22817556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 133

               
               
               Conread position:93-252
               
               
               Cow position:chrX:11459508-11459350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:95-258
               
               
               Cow position:chrX:12354856-12355020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):13, 115

               
               
               Conread position:101-259
               
               
               Cow position:chrX:45376654-45376489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):9, 114