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Cow genome map

           
Conread name:
           
rdbla0119_i21.y1
        

               
Conread position:
               
1-162
               

               
Cow position:
               
chr1:33392469-33392305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr1:44078969-44079139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:37420864-37421066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
5, 102
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:88028274-88028054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
5, 123
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr1:71135352-71135128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
2-166
               

               
Cow position:
               
chr1:19056323-19056156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr1:31190975-31191196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 17
               

               
Conread position:
               
3-107
               

               
Cow position:
               
chr1:52508173-52508278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 24
               

               
Conread position:
               
3-118
               

               
Cow position:
               
chr1:63517389-63517507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-122
               

               
Cow position:
               
chr1:3440411-3440290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 51
               

               
Conread position:
               
3-124
               

               
Cow position:
               
chr1:40061671-40061549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
3-125
               

               
Cow position:
               
chr1:52380893-52380768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-127
               

               
Cow position:
               
chr1:3932191-3932318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-127
               

               
Cow position:
               
chr1:32795650-32795523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-127
               

               
Cow position:
               
chr1:66368944-66369071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-133
               

               
Cow position:
               
chr1:24202697-24202831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
3-133
               

               
Cow position:
               
chr1:57636060-57635933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
3-142
               

               
Cow position:
               
chr1:94464561-94464420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
3-145
               

               
Cow position:
               
chr1:97076052-97076197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-148
               

               
Cow position:
               
chr1:10365015-10364869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
36, 135
               

               
Conread position:
               
3-152
               

               
Cow position:
               
chr1:101973958-101974111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
3-156
               

               
Cow position:
               
chr1:4515275-4515431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
3-156
               

               
Cow position:
               
chr1:4646085-4646241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
3-157
               

               
Cow position:
               
chr1:7746379-7746233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chr1:99837902-99838060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr1:4452636-4452797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr1:61282873-61282712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chr1:82860693-82860542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr1:20146861-20146701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr1:23117759-23117923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
3-174
               

               
Cow position:
               
chr1:21507639-21507811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
33, 156
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr1:20849082-20849257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr1:30281375-30281550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr1:74513694-74513869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr1:83060193-83060367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
36, 63
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr1:92196425-92196248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-179
               

               
Cow position:
               
chr1:7415934-7415756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 109
               

               
Conread position:
               
3-179
               

               
Cow position:
               
chr1:16372722-16372543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-179
               

               
Cow position:
               
chr1:31515665-31515844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-179
               

               
Cow position:
               
chr1:48345619-48345440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr1:57678930-57679110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr1:59202778-59202958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr1:84449074-84448893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 63
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr1:98789303-98789123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
36, 109
               

               
Conread position:
               
3-183
               

               
Cow position:
               
chr1:21165218-21165035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-183
               

               
Cow position:
               
chr1:56190970-56191152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 109
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chr1:32563086-32563270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr1:31352184-31352364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
93, 31
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr1:82567861-82567678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
36, 92
               

               
Conread position:
               
3-189
               

               
Cow position:
               
chr1:73870303-73870112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 109
               

               
Conread position:
               
3-191
               

               
Cow position:
               
chr1:66145149-66144958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr1:19441091-19441284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr1:26838404-26838211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 189
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr1:52510669-52510858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 135
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chr1:5013349-5013543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr1:42740145-42739950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr1:57660049-57659866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr1:89112270-89112077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr1:19828535-19828729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr1:3263438-3263235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr1:79590300-79590096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr1:74939181-74938978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr1:67913525-67913324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr1:92279368-92279566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr1:22730123-22730330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr1:77867006-77866797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:4375350-4375546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 31
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr1:13718388-13718599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
36, 107
               

               
Conread position:
               
3-213
               

               
Cow position:
               
chr1:44127393-44127604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr1:31391851-31392059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
116, 30
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr1:13251096-13251312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr1:18196044-18195829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr1:68818460-68818675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 109
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr1:79255434-79255229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr1:40681282-40681498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr1:61203833-61203617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr1:77924930-77924714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr1:82479432-82479216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr1:93111897-93112114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
36, 77
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr1:81308810-81308593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr1:52434475-52434256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr1:42057042-42056829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr1:46694458-46694677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr1:51980424-51980215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr1:53578505-53578286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr1:99572118-99572335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 203
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr1:102431290-102431509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr1:7162359-7162579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr1:21113974-21114192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
36, 181
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr1:53371818-53371587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 200
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr1:102321669-102321886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:8527966-8528186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 135
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:17248214-17248435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:20543677-20543455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:22727750-22727520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:24580855-24580634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 109
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:38545272-38545495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
93, 19
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:39480042-39480256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:43568061-43568282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:52171348-52171567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
30, 160
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:57574138-57574358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:67006327-67006106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:72589915-72590136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr1:98618113-98617900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
11, 16
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:2989932-2989708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:3340117-3339892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 209
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:3382870-3383092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 187
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:3930891-3931115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:4337215-4336988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 121
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:5505387-5505163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
36, 144
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:7324520-7324296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:7406120-7405896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:8470713-8470937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:8517621-8517845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:8557135-8556911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:8602527-8602751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:9261945-9261734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:9595497-9595720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
36, 141
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:11199182-11199405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 87
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:11666092-11666315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
36, 212
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:12374855-12375079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:12872006-12872230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 109
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:13438568-13438346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:13579329-13579548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 65
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:14240618-14240842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:15149194-15149418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:16116950-16117174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:16797653-16797871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:16838766-16838542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:16973667-16973887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:17187791-17188015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:17938305-17938527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 174
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:18087878-18087654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:18698879-18698655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:19158008-19158232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:19236048-19236272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:19775642-19775866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:20001552-20001767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:20527609-20527385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:20832331-20832107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:20846564-20846788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:21258153-21258374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 131
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:21576991-21576767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:21678239-21678026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 87
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:22012514-22012735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:22481209-22481435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:22529362-22529583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 188
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:23861260-23861484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:24440613-24440834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 171
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:24562306-24562523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:24571697-24571910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
190, 36
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:25053138-25053362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:25088221-25088447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:25178576-25178800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:26446604-26446381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 205
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:26536737-26536961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:26588399-26588175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:26722215-26722437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:26811625-26811847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 174
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:28521100-28520876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:28714488-28714264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:28811793-28812017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:28876546-28876322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:29410760-29410985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
36, 167
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:29429053-29428824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:30033715-30033508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
34, 29
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:30079390-30079168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 195
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:30305839-30306065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:30495007-30494793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:30531575-30531795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
36, 77
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:31351320-31351541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
16, 12
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:31414778-31414997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
33, 149
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:31535301-31535077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:31646175-31646399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:32961054-32961278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:33547952-33548176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:33716409-33716185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:33854716-33854492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:34533690-34533466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:35598362-35598585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 141
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:36646006-36646226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:37323835-37324043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:38712161-38711937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:39235054-39235278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:39249989-39250214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 134
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:40088825-40088600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
33, 142
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:40532435-40532645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:40964697-40964921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
33, 109
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:42875213-42875431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
92, 31
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:45021675-45021457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
36, 164
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:47078731-47078955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:47119406-47119182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:47454531-47454752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:48250166-48249940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:48810745-48810969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:49132724-49132948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:50764596-50764383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:51444693-51444468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:52054270-52054045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:52355223-52355447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:52371421-52371197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:52379742-52379518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:53309215-53309432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:54116694-54116473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:54295699-54295918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
36, 69
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:54471965-54472189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:54933377-54933153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:55043815-55044037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 58
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:55158934-55159158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:55327788-55328007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 164
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:55780318-55780096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:56205362-56205585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:56425359-56425138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 145
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:56666549-56666325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:56746333-56746109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:57362884-57363108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:57506240-57506016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:57571281-57571056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:57759362-57759140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:57946379-57946169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:57970153-57970372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 83
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:58192357-58192580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 164
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:58340363-58340147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:58439850-58440072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
35, 109
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:60250977-60251201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:61096949-61096724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:61331514-61331738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:61339871-61340095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:61342257-61342481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:61746733-61746943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:61748003-61748225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:62507793-62508024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:63046334-63046110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:63049027-63048804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 198
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:63240142-63239919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 160
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:63602339-63602564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:64717443-64717667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:65390006-65389784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 174
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:66491030-66490806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:66971711-66971934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:67078378-67078599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
41, 129
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:67831687-67831911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:68145522-68145746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:68602181-68602405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:68610329-68610547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:69503925-69504149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:69671172-69671396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:71559301-71559519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 124
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:72087048-72086824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:72766589-72766811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 153
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:72864394-72864175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
36, 108
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:72986907-72986683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:73010433-73010209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:73063889-73064110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:73404229-73404010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 109
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:73440415-73440191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:73463413-73463191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 131
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:73565029-73565253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:73762096-73762320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:73967961-73967737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:76618026-76618249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:76748943-76749163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
36, 144
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:77748192-77747968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:78921564-78921788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:79113861-79113645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
117, 24
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:79453311-79453535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:79553944-79553721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
20, 126
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:79633106-79633327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:80564628-80564852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:81302563-81302341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:82909386-82909606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
90, 61
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:82920693-82920914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
36, 89
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:83169891-83169667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:84283965-84284189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:84447131-84446904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 14
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:85630785-85630561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:85777012-85777234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:85795395-85795172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 120
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:86496738-86496514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:86544689-86544912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
36, 187
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:86599562-86599790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:86705586-86705377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:88179308-88179083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:88328038-88328255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 109
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:89090088-89090312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:89234583-89234807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:89431852-89431628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:89793402-89793178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:91105487-91105267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:91902468-91902244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:92008712-92008499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 15
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:93850750-93850526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:93857971-93857747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:95456801-95456577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:95474453-95474676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 181
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:97285212-97285430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:99117465-99117240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:99118933-99118709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:99582007-99582232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 162
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:99916888-99916664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:100421045-100420823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:100591324-100591547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:100888059-100888282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 192
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr1:102552452-102552242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
33, 123
               

               
Conread position:
               
3-225
               

               
Cow position:
               
chr1:70535015-70535239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr1:11874194-11874416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr1:51884058-51883838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr1:53520111-53519887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr1:69770267-69770041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 77
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr1:82369865-82369642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
3-231
               

               
Cow position:
               
chr1:71044949-71044726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
123, 77
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chr1:22909315-22908904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
4-107
               

               
Cow position:
               
chr1:98559361-98559255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
4-120
               

               
Cow position:
               
chr1:82163349-82163470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-122
               

               
Cow position:
               
chr1:12057801-12057923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chr1:19884452-19884636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr1:56631826-56631619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
4-216
               

               
Cow position:
               
chr1:7837313-7837527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 202
               

               
Conread position:
               
4-218
               

               
Cow position:
               
chr1:79334539-79334756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr1:2764564-2764345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr1:10726071-10725852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr1:61220878-61220662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
4-223
               

               
Cow position:
               
chr1:24655278-24655058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 191
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:6165424-6165209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:11854502-11854719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:13404939-13405160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:17033147-17033367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 158
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:20378147-20378371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:29461775-29461556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:30440602-30440385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:53311678-53311455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
32, 165
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:56644444-56644653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:76878479-76878257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:82091342-82091119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 161
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr1:101787492-101787709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
35, 131
               

               
Conread position:
               
5-145
               

               
Cow position:
               
chr1:6765656-6765793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
5-178
               

               
Cow position:
               
chr1:61662091-61662266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
5-190
               

               
Cow position:
               
chr1:89767084-89767271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
5-196
               

               
Cow position:
               
chr1:5162892-5163088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chr1:88530530-88530745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
91, 30
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chr1:19483799-19484015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
5-221
               

               
Cow position:
               
chr1:54163640-54163857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr1:29037987-29037765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr1:51967693-51967479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
94, 36
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr1:55145492-55145270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
34, 107
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr1:58419118-58418901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 139
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr1:61563481-61563262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr1:69406605-69406383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr1:70387880-70388093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 107
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr1:90913276-90913052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr1:30035061-30034849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
6-171
               

               
Cow position:
               
chr1:28176199-28176034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
6-219
               

               
Cow position:
               
chr1:71792375-71792160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
6-221
               

               
Cow position:
               
chr1:68846272-68846482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
6-224
               

               
Cow position:
               
chr1:100451228-100451442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
7-224
               

               
Cow position:
               
chr1:25119833-25120052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
32, 178
               

               
Conread position:
               
7-224
               

               
Cow position:
               
chr1:38418266-38418048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
28, 164
               

               
Conread position:
               
8-195
               

               
Cow position:
               
chr1:22389227-22389420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
8-224
               

               
Cow position:
               
chr1:31707926-31707707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
9-224
               

               
Cow position:
               
chr1:56140915-56141128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
13, 139
               

               
Conread position:
               
11-203
               

               
Cow position:
               
chr1:25553245-25553051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
25, 173
               

               
Conread position:
               
21-183
               

               
Cow position:
               
chr1:68281976-68281815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
85, 18
               

               
Conread position:
               
22-224
               

               
Cow position:
               
chr1:101523970-101524166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 146
               

               
Conread position:
               
23-221
               

               
Cow position:
               
chr1:30065806-30065606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
23-224
               

               
Cow position:
               
chr1:34684912-34684711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
24-210
               

               
Cow position:
               
chr1:10468894-10469083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
24-220
               

               
Cow position:
               
chr1:81860087-81860281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
24-221
               

               
Cow position:
               
chr1:100536576-100536378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
15, 88
               

               
Conread position:
               
24-224
               

               
Cow position:
               
chr1:46612869-46613071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
15, 175
               

               
Conread position:
               
24-224
               

               
Cow position:
               
chr1:55493636-55493839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
24-224
               

               
Cow position:
               
chr1:60342483-60342281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 42
               

               
Conread position:
               
24-224
               

               
Cow position:
               
chr1:85807187-85807389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
11, 143
               

               
Conread position:
               
25-171
               

               
Cow position:
               
chr1:90622795-90622946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
25-224
               

               
Cow position:
               
chr1:19162395-19162193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
26-224
               

               
Cow position:
               
chr1:7712206-7712007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
13, 172
               

               
Conread position:
               
26-224
               

               
Cow position:
               
chr1:28677481-28677283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
13, 112
               

               
Conread position:
               
28-216
               

               
Cow position:
               
chr1:72103534-72103349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
10, 67
               

               
Conread position:
               
28-224
               

               
Cow position:
               
chr1:14529042-14529233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
35-216
               

               
Cow position:
               
chr1:82864235-82864050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
37-220
               

               
Cow position:
               
chr1:21352904-21353088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 73
               

               
Conread position:
               
37-224
               

               
Cow position:
               
chr1:8745910-8745722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
37-224
               

               
Cow position:
               
chr1:53397114-53396930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 62
               

               
Conread position:
               
37-226
               

               
Cow position:
               
chr1:101130608-101130785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
61, 29
               

               
Conread position:
               
38-221
               

               
Cow position:
               
chr1:53368620-53368441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
58, 138
               

               
Conread position:
               
40-224
               

               
Cow position:
               
chr1:29365816-29365631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
40-224
               

               
Cow position:
               
chr1:91889979-91890166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
43-224
               

               
Cow position:
               
chr1:9262698-9262880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
43-224
               

               
Cow position:
               
chr1:18486770-18486952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
43-224
               

               
Cow position:
               
chr1:40058512-40058330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
43-224
               

               
Cow position:
               
chr1:64942129-64942311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
43-224
               

               
Cow position:
               
chr1:100709478-100709296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
44-216
               

               
Cow position:
               
chr1:28413818-28413991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
5, 67
               

               
Conread position:
               
45-224
               

               
Cow position:
               
chr1:98535001-98534822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
51, 144
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr1:11771380-11771561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
225-354
               

               
Cow position:
               
chr1:31422996-31423124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
225-535
               

               
Cow position:
               
chr1:99021753-99022065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
225-540
               

               
Cow position:
               
chr1:67285064-67284754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
106, 102
               

               
Conread position:
               
226-506
               

               
Cow position:
               
chr1:18245766-18246050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
240-423
               

               
Cow position:
               
chr1:93223264-93223449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr10:63881714-63881488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr10:56834438-56834229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 67
               

               
Conread position:
               
3-107
               

               
Cow position:
               
chr10:19560150-19560043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-107
               

               
Cow position:
               
chr10:24785255-24785148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-109
               

               
Cow position:
               
chr10:49432583-49432474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-116
               

               
Cow position:
               
chr10:48097776-48097660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-122
               

               
Cow position:
               
chr10:41406135-41406013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-126
               

               
Cow position:
               
chr10:17123966-17124092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-127
               

               
Cow position:
               
chr10:19331348-19331221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-127
               

               
Cow position:
               
chr10:58499416-58499543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-127
               

               
Cow position:
               
chr10:61323169-61323042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-129
               

               
Cow position:
               
chr10:14824821-14824950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-136
               

               
Cow position:
               
chr10:9517093-9516957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-138
               

               
Cow position:
               
chr10:10082608-10082746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-152
               

               
Cow position:
               
chr10:63626612-63626464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
3-156
               

               
Cow position:
               
chr10:28835407-28835243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
3-156
               

               
Cow position:
               
chr10:53963910-53963754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chr10:21461203-21461045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 129
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chr10:14971442-14971280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr10:10023439-10023275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr10:31637133-31636977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 109
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr10:6850691-6850528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
3-174
               

               
Cow position:
               
chr10:14788359-14788531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 30
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr10:28930630-28930805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr10:7825928-7826106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chr10:40148684-40148866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chr10:9799044-9799229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr10:16091556-16091367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
3-191
               

               
Cow position:
               
chr10:15753833-15753642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr10:54072307-54072499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
36, 169
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr10:1662499-1662697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr10:17959832-17959633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr10:38843597-38843399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr10:21889413-21889614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr10:29815756-29815557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr10:39079882-39079681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr10:53081717-53081515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
36, 187
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr10:21414035-21414247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr10:24940-24730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr10:10147795-10147592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr10:25866220-25866431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
36, 109
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr10:51776226-51776446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr10:45769235-45769025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
36, 204
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr10:39875976-39876190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 139
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr10:20871000-20870785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr10:27120438-27120652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 127
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr10:60354612-60354397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 120
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr10:7736963-7736750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
36, 108
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr10:23913381-23913596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr10:31005842-31006060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 160
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr10:34666439-34666654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
38, 108
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr10:42636152-42635949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr10:63938835-63938622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 31
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr10:24757594-24757380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
35, 159
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr10:41623050-41622834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
36, 130
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr10:8219977-8219765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr10:31669741-31669521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr10:21709765-21709980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
35, 186
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr10:31527171-31526957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr10:51779882-51780094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 97
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:130394-130173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:14857751-14857537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
36, 131
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:16929637-16929416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:19141136-19141356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 129
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:22381191-22380969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:23412520-23412299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:31374942-31375163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:32581938-32581718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
36, 198
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:33556189-33556404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:38542248-38542466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 185
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:46226293-46226077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:47910089-47909868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:57553667-57553887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 211
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:62405322-62405542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr10:63954969-63954757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:185535-185311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:277884-278107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:326563-326340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 59
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:1377021-1377244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 87
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:1380969-1380746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:1979508-1979731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:2466431-2466652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
36, 109
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:3494461-3494683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:3506672-3506891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
41, 99
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:4640883-4641107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:5784769-5784987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
36, 109
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:5858296-5858072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:6221719-6221495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:7259796-7260020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:7278630-7278851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:7497661-7497885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:7894975-7895197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 205
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:8459697-8459476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 169
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:8682098-8681874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:9580599-9580824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:9681699-9681918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
38, 146
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:11110743-11110519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:11216720-11216941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 170
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:11623254-11623476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 210
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:12653677-12653453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:14332367-14332591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:14422362-14422138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:14807411-14807187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr10:14908728-14908500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
36, 135
               
3-224UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr10:16646838-16647060 (view  custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 139
               
3-224UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:17222846-17222622 (view  custom track)

               
               
               
Alignm length:
225

               
               
               
Alignm identity:
177

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
38, 0
3-224UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:19843145-19842921 (view  custom track)

               
               
               
Alignm length:
225

               
               
               
Alignm identity:
174

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:19894476-19894260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr10:20372953-20373181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr10:20398379-20398164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):93, 68

               
               
               Conread position:3-224
               
               
               Cow position:chr10:20516388-20516162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:21397747-21397971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:21449721-21449949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:21466295-21466519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:21729229-21729453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:21737203-21737426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:22104954-22104730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:22320693-22320473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr10:22344934-22344713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):99, 41

               
               
               Conread position:3-224
               
               
               Cow position:chr10:22528750-22528972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr10:22579344-22579567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:3-224
               
               
               Cow position:chr10:22978685-22978909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:3-224
               
               
               Cow position:chr10:22984256-22984474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr10:23648819-23649043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:24297023-24297253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:25005738-25005516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 172

               
               
               Conread position:3-224
               
               
               Cow position:chr10:25341580-25341359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:3-224
               
               
               Cow position:chr10:26539437-26539660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-224
               
               
               Cow position:chr10:26766021-26765798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 201

               
               
               Conread position:3-224
               
               
               Cow position:chr10:26922815-26923039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):36, 163

               
               
               Conread position:3-224
               
               
               Cow position:chr10:28030462-28030684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:3-224
               
               
               Cow position:chr10:28775309-28775076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:29174698-29174474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:29628796-29629018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:3-224
               
               
               Cow position:chr10:29777128-29776904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:30689474-30689248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:30720169-30719945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:31655699-31655475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:32282488-32282264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:32365413-32365189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:32700424-32700202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 165

               
               
               Conread position:3-224
               
               
               Cow position:chr10:32704236-32704012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:34664304-34664519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:3-224
               
               
               Cow position:chr10:35353601-35353820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):33, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr10:36878982-36879206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:37138830-37139054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:37773353-37773129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:37908676-37908900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:38154624-38154399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):12, 110

               
               
               Conread position:3-224
               
               
               Cow position:chr10:38397283-38397504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-224
               
               
               Cow position:chr10:39037577-39037801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:39441641-39441419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:3-224
               
               
               Cow position:chr10:39811037-39811261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:39971417-39971192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:40269338-40269117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 134

               
               
               Conread position:3-224
               
               
               Cow position:chr10:40591689-40591465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:40737149-40736932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr10:41139548-41139771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr10:41561002-41561226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:41570574-41570350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:42214349-42214125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:43081233-43081011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr10:44113826-44114050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:44765162-44764938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:3-224
               
               
               Cow position:chr10:45648329-45648107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr10:45670427-45670649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):29, 171

               
               
               Conread position:3-224
               
               
               Cow position:chr10:45730524-45730745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr10:47096558-47096782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:47772888-47772667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:3-224
               
               
               Cow position:chr10:48241083-48241307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:48390294-48390510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-224
               
               
               Cow position:chr10:48909409-48909185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:49145712-49145489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:3-224
               
               
               Cow position:chr10:49504407-49504183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:49914285-49914509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:50016911-50017114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr10:50199449-50199232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr10:50452026-50451807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):41, 133

               
               
               Conread position:3-224
               
               
               Cow position:chr10:51558874-51558650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:53058831-53059060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr10:53828055-53827831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:55036893-55036666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:55096534-55096313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 158

               
               
               Conread position:3-224
               
               
               Cow position:chr10:55930956-55930732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:59173596-59173820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 30

               
               
               Conread position:3-224
               
               
               Cow position:chr10:60206607-60206383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:3-224
               
               
               Cow position:chr10:60960084-60959861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr10:63776302-63776078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:64347438-64347220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:3-224
               
               
               Cow position:chr10:65810695-65810919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:66987467-66987692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr10:69935634-69935853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:3-226
               
               
               Cow position:chr10:2116975-2117194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-226
               
               
               Cow position:chr10:68095596-68095821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr10:34334541-34334768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr10:39775119-39775335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:3-227
               
               
               Cow position:chr10:65790828-65791059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:3-228
               
               
               Cow position:chr10:47084500-47084273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-228
               
               
               Cow position:chr10:60723510-60723733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:4-169
               
               
               Cow position:chr10:43288909-43289073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:4-218
               
               
               Cow position:chr10:1720394-1720611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr10:8293603-8293379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr10:17491934-17492151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 93

               
               
               Conread position:4-224
               
               
               Cow position:chr10:19522681-19522903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr10:29106353-29106573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:4-224
               
               
               Cow position:chr10:37788531-37788755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr10:48171002-48170771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):35, 140

               
               
               Conread position:4-224
               
               
               Cow position:chr10:50110735-50110957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 143

               
               
               Conread position:4-224
               
               
               Cow position:chr10:50315096-50314874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:4-225
               
               
               Cow position:chr10:42644021-42643798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:4-226
               
               
               Cow position:chr10:64301228-64301453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:5-137
               
               
               Cow position:chr10:60232512-60232379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:5-203
               
               
               Cow position:chr10:45484536-45484738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:5-223
               
               
               Cow position:chr10:53157951-53158170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 157

               
               
               Conread position:5-224
               
               
               Cow position:chr10:6539254-6539033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:5-224
               
               
               Cow position:chr10:14904683-14904464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:5-224
               
               
               Cow position:chr10:20380516-20380738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr10:39211244-39211023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:5-224
               
               
               Cow position:chr10:41917468-41917690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:5-224
               
               
               Cow position:chr10:64304560-64304776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 61

               
               
               Conread position:5-227
               
               
               Cow position:chr10:37530352-37530563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:6-224
               
               
               Cow position:chr10:2612558-2612337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:8-224
               
               
               Cow position:chr10:48384759-48384975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):98, 36

               
               
               Conread position:9-226
               
               
               Cow position:chr10:50518671-50518889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 160

               
               
               Conread position:18-219
               
               
               Cow position:chr10:46194933-46194728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:18-224
               
               
               Cow position:chr10:10721792-10722001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:21-224
               
               
               Cow position:chr10:31465737-31465532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:21-224
               
               
               Cow position:chr10:42754508-42754309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):24, 73

               
               
               Conread position:22-210
               
               
               Cow position:chr10:11406731-11406543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:22-216
               
               
               Cow position:chr10:14849003-14849194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):17, 71

               
               
               Conread position:22-224
               
               
               Cow position:chr10:76547-76348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 117

               
               
               Conread position:22-224
               
               
               Cow position:chr10:31734136-31733932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:23-196
               
               
               Cow position:chr10:25259172-25258999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:23-224
               
               
               Cow position:chr10:40376461-40376257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr10:57986245-57986446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr10:38013503-38013307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 161

               
               
               Conread position:37-224
               
               
               Cow position:chr10:12313995-12313812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):89, 56

               
               
               Conread position:38-224
               
               
               Cow position:chr10:38818344-38818157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:40-196
               
               
               Cow position:chr10:38943215-38943061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 119

               
               
               Conread position:41-224
               
               
               Cow position:chr10:46241470-46241285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:43-224
               
               
               Cow position:chr10:30682061-30682243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:44-221
               
               
               Cow position:chr10:46172767-46172938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:47-220
               
               
               Cow position:chr10:13419329-13419499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:143
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:48-221
               
               
               Cow position:chr10:69530880-69530707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 122

               
               
               Conread position:214-540
               
               
               Cow position:chr10:39781211-39781530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):160, 7

               
               
               Conread position:1-221
               
               
               Cow position:chr11:48982405-48982185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):5, 124

               
               
               Conread position:1-224
               
               
               Cow position:chr11:45155634-45155859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:2-216
               
               
               Cow position:chr11:15988401-15988184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:2-217
               
               
               Cow position:chr11:57625078-57625295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:2-221
               
               
               Cow position:chr11:9153789-9154007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:3-107
               
               
               Cow position:chr11:21820289-21820395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:3-117
               
               
               Cow position:chr11:14650124-14650241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-121
               
               
               Cow position:chr11:66664308-66664428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-122
               
               
               Cow position:chr11:51477746-51477626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-125
               
               
               Cow position:chr11:76370728-76370853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr11:33189683-33189556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-135
               
               
               Cow position:chr11:10100160-10100025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr11:50282298-50282437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-143
               
               
               Cow position:chr11:37069140-37069278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:3-146
               
               
               Cow position:chr11:24045648-24045794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr11:46142874-46143020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-152
               
               
               Cow position:chr11:31236291-31236439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:3-152
               
               
               Cow position:chr11:37346055-37345903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-152
               
               
               Cow position:chr11:47845878-47845726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-156
               
               
               Cow position:chr11:48658842-48658687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-163
               
               
               Cow position:chr11:66858876-66859039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr11:38638216-38638391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:3-180
               
               
               Cow position:chr11:63261095-63261275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:2801147-2801330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr11:70602171-70602348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 124

               
               
               Conread position:3-187
               
               
               Cow position:chr11:74389311-74389124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr11:40402661-40402846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:3-192
               
               
               Cow position:chr11:8246295-8246110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:3-196
               
               
               Cow position:chr11:9870612-9870416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:3-197
               
               
               Cow position:chr11:43917546-43917349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-197
               
               
               Cow position:chr11:61131841-61132038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-197
               
               
               Cow position:chr11:82346017-82346210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:3-199
               
               
               Cow position:chr11:67746524-67746326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:3-199
               
               
               Cow position:chr11:75256302-75256103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-202
               
               
               Cow position:chr11:21371969-21372171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr11:32108878-32108679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:163
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:3-209
               
               
               Cow position:chr11:33601527-33601737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-210
               
               
               Cow position:chr11:1626046-1626253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 124

               
               
               Conread position:3-210
               
               
               Cow position:chr11:9432487-9432288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-211
               
               
               Cow position:chr11:10365289-10365495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):93, 20

               
               
               Conread position:3-211
               
               
               Cow position:chr11:44870630-44870427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:3-211
               
               
               Cow position:chr11:47757876-47758087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-211
               
               
               Cow position:chr11:86579037-86578822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):35, 197

               
               
               Conread position:3-213
               
               
               Cow position:chr11:42517451-42517238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:3-216
               
               
               Cow position:chr11:59871922-59871711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:3-217
               
               
               Cow position:chr11:30087988-30087771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr11:52515619-52515420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:3-217
               
               
               Cow position:chr11:66898986-66899202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:3-218
               
               
               Cow position:chr11:3230432-3230218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:3-219
               
               
               Cow position:chr11:34297595-34297381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-220
               
               
               Cow position:chr11:17549270-17549050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr11:38832367-38832585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-221
               
               
               Cow position:chr11:2293948-2294169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr11:7329050-7328831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:3-221
               
               
               Cow position:chr11:7719403-7719624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr11:10093981-10093765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:3-221
               
               
               Cow position:chr11:26121808-26122029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 215

               
               
               Conread position:3-221
               
               
               Cow position:chr11:31865745-31865524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:3-221
               
               
               Cow position:chr11:38641061-38640842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr11:44255185-44254965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:3-221
               
               
               Cow position:chr11:61397509-61397730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr11:67453765-67453546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-222
               
               
               Cow position:chr11:8499178-8498957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr11:260031-260260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 211

               
               
               Conread position:3-224
               
               
               Cow position:chr11:1504884-1505109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:2285825-2285601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:3496155-3495931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:5273462-5273686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:5482334-5482558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:6343571-6343348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr11:7120851-7121075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:7152112-7151888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:7229472-7229248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:7681073-7680851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 161

               
               
               Conread position:3-224
               
               
               Cow position:chr11:8443879-8444099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):93, 25

               
               
               Conread position:3-224
               
               
               Cow position:chr11:9388449-9388225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:10698634-10698858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:10851225-10851002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:3-224
               
               
               Cow position:chr11:10871713-10871937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:10958941-10958717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:11315717-11315941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:11592092-11591865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:11991111-11990885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:12077292-12077518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):33, 178

               
               
               Conread position:3-224
               
               
               Cow position:chr11:12178200-12177976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:12316958-12317182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:12353780-12354004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:13087555-13087779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:14259849-14260069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:3-224
               
               
               Cow position:chr11:15047571-15047347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:15495500-15495276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:16229540-16229759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:3-224
               
               
               Cow position:chr11:16547838-16548062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:17104590-17104802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:3-224
               
               
               Cow position:chr11:17854206-17853982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:17980182-17980404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:17997822-17998045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr11:18146438-18146658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr11:18920485-18920698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr11:19060962-19061186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:19099373-19099597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:20285506-20285730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:20731110-20731334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:21471737-21471515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr11:21728909-21729132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-224
               
               
               Cow position:chr11:22617834-22618058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:23494857-23494640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr11:23883459-23883235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:24333881-24334105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:24493696-24493920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:25336251-25336027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:3-224
               
               
               Cow position:chr11:25808638-25808859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr11:26067998-26068231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:26482682-26482460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 180

               
               
               Conread position:3-224
               
               
               Cow position:chr11:26534944-26534721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr11:26550588-26550365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 168

               
               
               Conread position:3-224
               
               
               Cow position:chr11:27922908-27922682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:28226666-28226890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:28631645-28631421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:28692861-28693082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr11:29662942-29663162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr11:30164682-30164460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr11:30190858-30190642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):93, 125

               
               
               Conread position:3-224
               
               
               Cow position:chr11:30200587-30200805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr11:30255550-30255321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:30700606-30700382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:30777075-30776851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:30929494-30929270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:31834149-31834373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:31836296-31836078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 196

               
               
               Conread position:3-224
               
               
               Cow position:chr11:32077671-32077894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 201

               
               
               Conread position:3-224
               
               
               Cow position:chr11:32455166-32454942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:32762564-32762340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:32875831-32876055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:33000983-33000768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:3-224
               
               
               Cow position:chr11:33733475-33733690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:34638392-34638616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:35142220-35142444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:35541958-35542180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr11:35738232-35738454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:3-224
               
               
               Cow position:chr11:36930422-36930642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr11:37279469-37279686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:3-224
               
               
               Cow position:chr11:38505119-38505343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:38574373-38574597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:38599602-38599826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:38793689-38793475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 50

               
               
               Conread position:3-224
               
               
               Cow position:chr11:40458288-40458063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:40487260-40487044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr11:41093750-41093974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:41167582-41167806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:41260816-41261040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:41314407-41314184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:43510863-43511087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:44153971-44154190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr11:44580122-44580345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:44893763-44893986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr11:46780958-46781180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 211

               
               
               Conread position:3-224
               
               
               Cow position:chr11:47972740-47972964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:48428253-48428031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr11:49171381-49171610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:49411447-49411666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 125

               
               
               Conread position:3-224
               
               
               Cow position:chr11:50510560-50510784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:50833647-50833871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:51034388-51034164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:52846587-52846362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:54302649-54302425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:54728575-54728352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 166

               
               
               Conread position:3-224
               
               
               Cow position:chr11:56463474-56463250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:56652130-56652351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 136

               
               
               Conread position:3-224
               
               
               Cow position:chr11:58136829-58136605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:58139806-58139593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr11:58804710-58804932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr11:59368923-59369147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:59444434-59444658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:59583542-59583318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:62009689-62009913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:63478963-63478739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:65760495-65760718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr11:66389899-66390119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-224
               
               
               Cow position:chr11:66732239-66732018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr11:67744494-67744275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:3-224
               
               
               Cow position:chr11:67863173-67863389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:3-224
               
               
               Cow position:chr11:67920230-67920450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-224
               
               
               Cow position:chr11:69403111-69403333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):36, 145

               
               
               Conread position:3-224
               
               
               Cow position:chr11:71332614-71332389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:74928908-74928691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr11:74990732-74990508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:75354319-75354092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr11:75511076-75511303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr11:75711141-75711365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:76767528-76767305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:77746094-77746318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):36, 210

               
               
               Conread position:3-224
               
               
               Cow position:chr11:80591469-80591251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr11:83001141-83000917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:83284993-83284781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr11:84774277-84774053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr11:84967220-84966996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:87154898-87155115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-225
               
               
               Cow position:chr11:15995606-15995381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-225
               
               
               Cow position:chr11:17279495-17279705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:3-225
               
               
               Cow position:chr11:48411640-48411411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):36, 111

               
               
               Conread position:3-226
               
               
               Cow position:chr11:1667733-1667510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-226
               
               
               Cow position:chr11:3796343-3796121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:3-226
               
               
               Cow position:chr11:21853139-21853365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr11:44106794-44106569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 170

               
               
               Conread position:3-226
               
               
               Cow position:chr11:58049815-58050039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:3-226
               
               
               Cow position:chr11:67848860-67849094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr11:35425723-35425935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):205, 31

               
               
               Conread position:3-227
               
               
               Cow position:chr11:65282122-65281904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-227
               
               
               Cow position:chr11:70030531-70030306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 153

               
               
               Conread position:3-227
               
               
               Cow position:chr11:85390750-85390965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:3-278
               
               
               Cow position:chr11:47573424-47573702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr11:4267044-4267267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr11:21896591-21896807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):34, 40

               
               
               Conread position:4-224
               
               
               Cow position:chr11:22933516-22933735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:4-224
               
               
               Cow position:chr11:25564863-25564641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:4-224
               
               
               Cow position:chr11:27724790-27725013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr11:28125624-28125403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr11:39151708-39151485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:4-224
               
               
               Cow position:chr11:63390371-63390591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):35, 144

               
               
               Conread position:4-224
               
               
               Cow position:chr11:63652566-63652787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:4-224
               
               
               Cow position:chr11:73137702-73137480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:5-179
               
               
               Cow position:chr11:42793826-42794008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:5-197
               
               
               Cow position:chr11:77033982-77034177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-199
               
               
               Cow position:chr11:12112036-12111840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:5-202
               
               
               Cow position:chr11:32956705-32956906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-202
               
               
               Cow position:chr11:32977891-32978092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-216
               
               
               Cow position:chr11:38235660-38235873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:5-220
               
               
               Cow position:chr11:41599578-41599796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):92, 29

               
               
               Conread position:5-220
               
               
               Cow position:chr11:49935638-49935856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:5-222
               
               
               Cow position:chr11:72369164-72368943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr11:53428912-53429134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr11:67295897-67296119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr11:68130512-68130299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):34, 85

               
               
               Conread position:5-224
               
               
               Cow position:chr11:73798591-73798810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):34, 173

               
               
               Conread position:5-225
               
               
               Cow position:chr11:73513262-73513485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):32, 107

               
               
               Conread position:5-227
               
               
               Cow position:chr11:35241759-35241984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:6-218
               
               
               Cow position:chr11:15128889-15128672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:18-224
               
               
               Cow position:chr11:80789293-80789503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:19-215
               
               
               Cow position:chr11:27660323-27660128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:21-224
               
               
               Cow position:chr11:81316786-81316988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:22-202
               
               
               Cow position:chr11:8844272-8844094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):17, 155

               
               
               Conread position:22-224
               
               
               Cow position:chr11:13062314-13062519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:23-221
               
               
               Cow position:chr11:76960547-76960351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:23-224
               
               
               Cow position:chr11:16118850-16119054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:23-224
               
               
               Cow position:chr11:81067828-81067637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:24-177
               
               
               Cow position:chr11:38842718-38842561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr11:29614483-29614280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr11:52128300-52128097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:24-226
               
               
               Cow position:chr11:44915590-44915799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:25-224
               
               
               Cow position:chr11:30057296-30057095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):14, 123

               
               
               Conread position:25-224
               
               
               Cow position:chr11:43361629-43361831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:25-224
               
               
               Cow position:chr11:63167431-63167627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:31-224
               
               
               Cow position:chr11:39599769-39599974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:35-202
               
               
               Cow position:chr11:44875554-44875387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:37-224
               
               
               Cow position:chr11:77749140-77748954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:38-186
               
               
               Cow position:chr11:41164375-41164226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr11:52463362-52463170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:41-224
               
               
               Cow position:chr11:67954057-67954233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:49-224
               
               
               Cow position:chr11:41177980-41177807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:223-540
               
               
               Cow position:chr11:44229978-44229677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):100, 28

               
               
               Conread position:228-540
               
               
               Cow position:chr11:30126371-30126684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 221

               
               
               Conread position:1-113
               
               
               Cow position:chr12:10490245-10490132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:2-223
               
               
               Cow position:chr12:3364283-3364059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:2-224
               
               
               Cow position:chr12:8841662-8841884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 181

               
               
               Conread position:3-99
               
               
               Cow position:chr12:29485265-29485363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-118
               
               
               Cow position:chr12:1855464-1855581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-126
               
               
               Cow position:chr12:21557342-21557216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr12:17787246-17787373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-131
               
               
               Cow position:chr12:10790851-10790982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr12:30016678-30016821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:3-152
               
               
               Cow position:chr12:1345473-1345316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr12:10988750-10988591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-177
               
               
               Cow position:chr12:1885944-1886122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr12:23475146-23474966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:3-184
               
               
               Cow position:chr12:14214456-14214271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr12:21904752-21904563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:3-195
               
               
               Cow position:chr12:5226629-5226434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:156
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr12:31261014-31261213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr12:19852652-19852447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:3-209
               
               
               Cow position:chr12:22202286-22202495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-210
               
               
               Cow position:chr12:3180804-3180594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr12:12177846-12178055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-217
               
               
               Cow position:chr12:32147234-32147451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr12:10931480-10931260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr12:11101643-11101423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr12:27994496-27994275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr12:41337837-41338058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:61812-62036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:259125-258901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:1007412-1007187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:1093295-1093073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr12:1511369-1511592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:3-224
               
               
               Cow position:chr12:2228966-2228742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:3716878-3717102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:5107453-5107229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:5110669-5110889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr12:5713362-5713135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:7674297-7674073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:7885488-7885716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr12:7961351-7961570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr12:8839649-8839425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:9988292-9988515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:3-224
               
               
               Cow position:chr12:10359091-10358867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:11582555-11582341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):16, 153

               
               
               Conread position:3-224
               
               
               Cow position:chr12:12754762-12754985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 57

               
               
               Conread position:3-224
               
               
               Cow position:chr12:12928515-12928735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr12:15720171-15720391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:3-224
               
               
               Cow position:chr12:15760436-15760210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr12:15821117-15820903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr12:16301943-16302167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:19155467-19155688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:3-224
               
               
               Cow position:chr12:19871609-19871383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:20994371-20994593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:3-224
               
               
               Cow position:chr12:21089544-21089768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:21212178-21211955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:3-224
               
               
               Cow position:chr12:21250919-21251142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:3-224
               
               
               Cow position:chr12:21432735-21432511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:21497501-21497722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr12:21610998-21610775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:3-224
               
               
               Cow position:chr12:21665531-21665307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:22517459-22517681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr12:22748611-22748386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:22979498-22979720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr12:23159116-23159330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:3-224
               
               
               Cow position:chr12:23378524-23378303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:3-224
               
               
               Cow position:chr12:24029087-24029307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr12:24447478-24447697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 168

               
               
               Conread position:3-224
               
               
               Cow position:chr12:25265938-25266162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:25313318-25313542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:27506254-27506478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:27958130-27958354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:28012836-28013060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:30687137-30686913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr12:31328934-31329159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:31829054-31829278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:32011382-32011606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:32656944-32656720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:32758092-32757868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:33297025-33296804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:3-224
               
               
               Cow position:chr12:33925302-33925526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:35162017-35161779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:35163173-35162935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:35367795-35367572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr12:35547733-35547957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:36287620-36287841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:3-224
               
               
               Cow position:chr12:36568950-36569173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:3-224
               
               
               Cow position:chr12:38893759-38893535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr12:43681400-43681176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr12:21888647-21888873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr12:25148223-25148448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-267
               
               
               Cow position:chr12:34176950-34176683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:4-178
               
               
               Cow position:chr12:6186755-6186929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:4-199
               
               
               Cow position:chr12:8172299-8172106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:157
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:4-208
               
               
               Cow position:chr12:3070249-3070044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):35, 144

               
               
               Conread position:4-213
               
               
               Cow position:chr12:22480519-22480307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:166
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr12:249926-250147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 173

               
               
               Conread position:4-224
               
               
               Cow position:chr12:15231425-15231206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:4-224
               
               
               Cow position:chr12:21314037-21314258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:4-224
               
               
               Cow position:chr12:21718778-21719006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):31, 87

               
               
               Conread position:5-158
               
               
               Cow position:chr12:23441546-23441702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-201
               
               
               Cow position:chr12:1108505-1108317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:5-209
               
               
               Cow position:chr12:28763621-28763827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:5-220
               
               
               Cow position:chr12:41973379-41973597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr12:8774057-8773838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 133

               
               
               Conread position:5-224
               
               
               Cow position:chr12:20459329-20459548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:5-224
               
               
               Cow position:chr12:23294627-23294406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr12:28571769-28571555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:6-218
               
               
               Cow position:chr12:1408210-1407995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:6-226
               
               
               Cow position:chr12:30502027-30501810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:6-229
               
               
               Cow position:chr12:31217574-31217352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):31, 78

               
               
               Conread position:7-221
               
               
               Cow position:chr12:22594146-22593939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:18-226
               
               
               Cow position:chr12:1774547-1774749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:22-216
               
               
               Cow position:chr12:19496001-19496195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:23-216
               
               
               Cow position:chr12:8136619-8136811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:23-226
               
               
               Cow position:chr12:41595597-41595391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 159

               
               
               Conread position:24-186
               
               
               Cow position:chr12:21672727-21672562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr12:6105980-6106177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:24-224
               
               
               Cow position:chr12:18936203-18936000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:26-221
               
               
               Cow position:chr12:42232680-42232484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:37-220
               
               
               Cow position:chr12:27435799-27435981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):62, 123

               
               
               Conread position:37-223
               
               
               Cow position:chr12:2285630-2285448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:37-224
               
               
               Cow position:chr12:2242628-2242816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:40-220
               
               
               Cow position:chr12:40306655-40306474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:40-227
               
               
               Cow position:chr12:8674710-8674897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):56, 82

               
               
               Conread position:43-228
               
               
               Cow position:chr12:43601903-43602089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:49-224
               
               
               Cow position:chr12:551471-551643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:237-540
               
               
               Cow position:chr12:2281806-2281501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):99, 31

               
               
               Conread position:1-124
               
               
               Cow position:chr13:17456289-17456164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:1-163
               
               
               Cow position:chr13:34113068-34113229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:1-216
               
               
               Cow position:chr13:32152598-32152812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 159

               
               
               Conread position:1-217
               
               
               Cow position:chr13:32659467-32659686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 33

               
               
               Conread position:2-224
               
               
               Cow position:chr13:5717501-5717727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-106
               
               
               Cow position:chr13:2800071-2799965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-107
               
               
               Cow position:chr13:43628482-43628375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-118
               
               
               Cow position:chr13:43892008-43891890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-121
               
               
               Cow position:chr13:34038372-34038492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-125
               
               
               Cow position:chr13:19638626-19638502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-125
               
               
               Cow position:chr13:30505253-30505379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr13:43594017-43593877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:3-154
               
               
               Cow position:chr13:12572257-12572409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:3-161
               
               
               Cow position:chr13:28171832-28171993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-169
               
               
               Cow position:chr13:46737000-46737155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:3-173
               
               
               Cow position:chr13:28449506-28449679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr13:47189203-47189027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:3-179
               
               
               Cow position:chr13:54864131-54863961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-187
               
               
               Cow position:chr13:6343069-6342882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-189
               
               
               Cow position:chr13:34508641-34508827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-191
               
               
               Cow position:chr13:28414102-28414293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:153
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-192
               
               
               Cow position:chr13:7870375-7870567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr13:30241752-30241558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-195
               
               
               Cow position:chr13:15446825-15447013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:3-196
               
               
               Cow position:chr13:15525581-15525777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr13:48627734-48627540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:3-199
               
               
               Cow position:chr13:15429757-15429947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:3-201
               
               
               Cow position:chr13:13312780-13312577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):36, 178

               
               
               Conread position:3-202
               
               
               Cow position:chr13:11822741-11822952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr13:17318191-17318409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-220
               
               
               Cow position:chr13:19393937-19394155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-220
               
               
               Cow position:chr13:28130836-28131056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr13:58718732-58718523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:3-221
               
               
               Cow position:chr13:10733165-10732946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 149

               
               
               Conread position:3-221
               
               
               Cow position:chr13:11795513-11795731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:3-221
               
               
               Cow position:chr13:33907575-33907788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:3-221
               
               
               Cow position:chr13:46488705-46488915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:3-221
               
               
               Cow position:chr13:47357407-47357618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr13:504521-504297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:561201-561423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:3-224
               
               
               Cow position:chr13:681238-681014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:838220-838444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:1442578-1442362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 121

               
               
               Conread position:3-224
               
               
               Cow position:chr13:2137991-2138215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:2725620-2725844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:2805095-2805319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr13:4487040-4486816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:4663808-4663586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr13:5229788-5230002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr13:5331525-5331301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:6718977-6719201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:8782094-8781871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr13:9537428-9537204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:11254475-11254684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr13:11390445-11390221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:12618304-12618086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):123, 138

               
               
               Conread position:3-224
               
               
               Cow position:chr13:13332766-13332991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:13903043-13902819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:14302799-14303023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:3-224
               
               
               Cow position:chr13:15257075-15256843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:15280474-15280250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:15921273-15921494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 144

               
               
               Conread position:3-224
               
               
               Cow position:chr13:16807777-16807560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:3-224
               
               
               Cow position:chr13:18097435-18097659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr13:18329938-18330162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:18761074-18761301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:3-224
               
               
               Cow position:chr13:19102486-19102710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:19843661-19843433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:3-224
               
               
               Cow position:chr13:21837110-21837334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:21905725-21905955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr13:23266645-23266866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr13:26204272-26204496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:28131693-28131469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:28700007-28699783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:29055241-29055465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:30468931-30469155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:30652098-30652321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:3-224
               
               
               Cow position:chr13:31510331-31510107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr13:31730384-31730608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:32081063-32080839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:32734000-32734224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:32774165-32774386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:3-224
               
               
               Cow position:chr13:32955273-32955498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:32982214-32982439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:33162128-33161904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:33333195-33333418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr13:34051806-34051585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:3-224
               
               
               Cow position:chr13:34345489-34345267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 177

               
               
               Conread position:3-224
               
               
               Cow position:chr13:34376342-34376567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:3-224
               
               
               Cow position:chr13:34871147-34870923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:34905393-34905610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:3-224
               
               
               Cow position:chr13:35760729-35760505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:38013470-38013691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):92, 107

               
               
               Conread position:3-224
               
               
               Cow position:chr13:38612405-38612187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr13:41337494-41337706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):192, 82

               
               
               Conread position:3-224
               
               
               Cow position:chr13:42086943-42087165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:3-224
               
               
               Cow position:chr13:43974766-43974988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr13:44323778-44323998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr13:45933938-45933714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:46056129-46055905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:48945758-48945972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr13:49805760-49805979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr13:49976857-49976633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:50079381-50079605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:50189885-50190108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:51298301-51298525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:52085113-52085334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:3-224
               
               
               Cow position:chr13:52251102-52250880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr13:52860049-52860272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:3-224
               
               
               Cow position:chr13:53052023-53051799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:53157202-53157426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:55337924-55337706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr13:56692457-56692233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:58313519-58313295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:60426217-60425991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:3-224
               
               
               Cow position:chr13:60465827-60466051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:60646399-60646623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr13:61954429-61954205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):33, 145

               
               
               Conread position:3-226
               
               
               Cow position:chr13:9570827-9571046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:3-226
               
               
               Cow position:chr13:26822943-26823156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 171

               
               
               Conread position:3-226
               
               
               Cow position:chr13:31608250-31608480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 203

               
               
               Conread position:3-226
               
               
               Cow position:chr13:32794156-32794380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 174

               
               
               Conread position:3-226
               
               
               Cow position:chr13:38897506-38897275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-226
               
               
               Cow position:chr13:50112653-50112427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr13:16248754-16248982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr13:35540591-35540366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 195

               
               
               Conread position:4-138
               
               
               Cow position:chr13:54216067-54215930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:4-196
               
               
               Cow position:chr13:3001165-3001360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:4-215
               
               
               Cow position:chr13:26381902-26381691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:4-221
               
               
               Cow position:chr13:7609330-7609111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:4-224
               
               
               Cow position:chr13:1590968-1591193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr13:3021299-3021522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr13:4944576-4944353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr13:6664942-6665165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr13:20538358-20538581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr13:20778284-20778503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):32, 145

               
               
               Conread position:4-224
               
               
               Cow position:chr13:32922128-32922347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 168

               
               
               Conread position:4-224
               
               
               Cow position:chr13:33522772-33522995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr13:11826578-11826789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):191, 30

               
               
               Conread position:6-224
               
               
               Cow position:chr13:21402016-21401797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:8-226
               
               
               Cow position:chr13:46427901-46427682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:9-224
               
               
               Cow position:chr13:13126534-13126752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:19-221
               
               
               Cow position:chr13:20567379-20567571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:22-224
               
               
               Cow position:chr13:9048763-9048558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):17, 183

               
               
               Conread position:22-224
               
               
               Cow position:chr13:34928324-34928119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:23-224
               
               
               Cow position:chr13:34190410-34190210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:25-221
               
               
               Cow position:chr13:19240062-19239865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 113

               
               
               Conread position:25-224
               
               
               Cow position:chr13:53574914-53575110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:26-219
               
               
               Cow position:chr13:18815539-18815735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 151

               
               
               Conread position:27-224
               
               
               Cow position:chr13:32166515-32166310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:28-224
               
               
               Cow position:chr13:32549915-32549722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:34-224
               
               
               Cow position:chr13:39951766-39951582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:37-227
               
               
               Cow position:chr13:42114842-42115033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:42-221
               
               
               Cow position:chr13:52459023-52459196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:44-224
               
               
               Cow position:chr13:30243471-30243290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:151
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:54-224
               
               
               Cow position:chr13:22715033-22714864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):124, 46

               
               
               Conread position:1-220
               
               
               Cow position:chr14:42626618-42626840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:1-225
               
               
               Cow position:chr14:46752533-46752753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 8

               
               
               Conread position:2-224
               
               
               Cow position:chr14:10310617-10310392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-224
               
               
               Cow position:chr14:35016417-35016192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-105
               
               
               Cow position:chr14:12243535-12243431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:3-106
               
               
               Cow position:chr14:35588740-35588634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-113
               
               
               Cow position:chr14:9538178-9538065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-118
               
               
               Cow position:chr14:20467190-20467074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-121
               
               
               Cow position:chr14:21765256-21765135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-125
               
               
               Cow position:chr14:46125604-46125479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr14:403221-403094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr14:10349804-10349931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-131
               
               
               Cow position:chr14:46375148-46375275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:3-133
               
               
               Cow position:chr14:40346316-40346184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:3-144
               
               
               Cow position:chr14:5113084-5113228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-144
               
               
               Cow position:chr14:5379214-5379072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr14:24973568-24973713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr14:50122082-50121931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:3-156
               
               
               Cow position:chr14:40229774-40229628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:3-167
               
               
               Cow position:chr14:4916730-4916897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr14:37334920-37335086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:3-169
               
               
               Cow position:chr14:38016607-38016438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-170
               
               
               Cow position:chr14:45278246-45278076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr14:41212013-41212183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:3-184
               
               
               Cow position:chr14:18497036-18496859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-187
               
               
               Cow position:chr14:105727-105544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:3-195
               
               
               Cow position:chr14:17651012-17650819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-202
               
               
               Cow position:chr14:12951176-12950976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:3-203
               
               
               Cow position:chr14:23215257-23215058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:3-204
               
               
               Cow position:chr14:24895728-24895524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-210
               
               
               Cow position:chr14:21728080-21727872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:3-213
               
               
               Cow position:chr14:21727014-21726804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:3-214
               
               
               Cow position:chr14:19448499-19448714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:3-216
               
               
               Cow position:chr14:34370589-34370374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:3-216
               
               
               Cow position:chr14:49219389-49219173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:3-217
               
               
               Cow position:chr14:34354606-34354390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr14:38391300-38391084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 129

               
               
               Conread position:3-219
               
               
               Cow position:chr14:42849544-42849764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:3-220
               
               
               Cow position:chr14:17690177-17689965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 28

               
               
               Conread position:3-220
               
               
               Cow position:chr14:19490036-19489818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-220
               
               
               Cow position:chr14:26496714-26496937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:3-220
               
               
               Cow position:chr14:31737036-31736816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr14:5500984-5500770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:3-221
               
               
               Cow position:chr14:9449475-9449696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr14:25683741-25683959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 164

               
               
               Conread position:3-221
               
               
               Cow position:chr14:30738706-30738489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-221
               
               
               Cow position:chr14:35419924-35419707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-221
               
               
               Cow position:chr14:41446067-41445841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:3-221
               
               
               Cow position:chr14:44382335-44382115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr14:46225236-46225016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:3-224
               
               
               Cow position:chr14:193206-192983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 181

               
               
               Conread position:3-224
               
               
               Cow position:chr14:5532396-5532173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:3-224
               
               
               Cow position:chr14:5645465-5645239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:7475913-7475690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:3-224
               
               
               Cow position:chr14:8102621-8102840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:3-224
               
               
               Cow position:chr14:8884825-8885048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 214

               
               
               Conread position:3-224
               
               
               Cow position:chr14:8925153-8924929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:8998675-8998448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 196

               
               
               Conread position:3-224
               
               
               Cow position:chr14:9047889-9047671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:9811737-9811514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:10541832-10542056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:3-224
               
               
               Cow position:chr14:11150859-11151083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:11462023-11462247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:12545725-12545497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:12739992-12740216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:12833907-12833683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:12903389-12903167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:3-224
               
               
               Cow position:chr14:13104998-13104774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:13308787-13308565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 173

               
               
               Conread position:3-224
               
               
               Cow position:chr14:13581926-13581702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:14271414-14271190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:15272208-15272429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr14:15336576-15336800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:16916670-16916894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:16996981-16997205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:17488282-17488506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:19419151-19418927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:19524109-19523885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:20786439-20786217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr14:21200978-21200756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 182

               
               
               Conread position:3-224
               
               
               Cow position:chr14:21540862-21541079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr14:22026718-22026941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:3-224
               
               
               Cow position:chr14:23254281-23254505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:24797633-24797857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:24836868-24836639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:3-224
               
               
               Cow position:chr14:24922839-24922616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:3-224
               
               
               Cow position:chr14:24980604-24980380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:25430707-25430483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 167

               
               
               Conread position:3-224
               
               
               Cow position:chr14:26129123-26129349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:27040329-27040550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr14:28212010-28211793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr14:28350641-28350865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:28796530-28796744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr14:28993291-28993515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:3-224
               
               
               Cow position:chr14:29044616-29044840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:29726928-29726714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr14:30476287-30476508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 152

               
               
               Conread position:3-224
               
               
               Cow position:chr14:30581408-30581633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:3-224
               
               
               Cow position:chr14:30662980-30663207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:3-224
               
               
               Cow position:chr14:31155883-31155658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:31289915-31289692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:31400431-31400650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr14:31881832-31882055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:3-224
               
               
               Cow position:chr14:32450013-32449789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:34168355-34168132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 204

               
               
               Conread position:3-224
               
               
               Cow position:chr14:34394790-34394571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:3-224
               
               
               Cow position:chr14:34629138-34629362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:34763786-34763562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:34906582-34906358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:35497576-35497352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):37, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr14:37444025-37443801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:37883054-37882826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):35, 129

               
               
               Conread position:3-224
               
               
               Cow position:chr14:38047233-38047013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr14:38238039-38238263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:38436088-38435864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:38459098-38459320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:3-224
               
               
               Cow position:chr14:38651968-38651744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:40475665-40475881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:3-224
               
               
               Cow position:chr14:40483405-40483629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:40969212-40968988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:41478801-41478582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr14:42259518-42259303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:3-224
               
               
               Cow position:chr14:43561253-43561036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:3-224
               
               
               Cow position:chr14:44026759-44026982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):33, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr14:44076629-44076852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr14:44293675-44293454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):33, 173

               
               
               Conread position:3-224
               
               
               Cow position:chr14:44367734-44367510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:44692206-44691998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr14:45739268-45739489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:3-224
               
               
               Cow position:chr14:46302962-46302737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:46848989-46849207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):36, 156

               
               
               Conread position:3-224
               
               
               Cow position:chr14:46960444-46960220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:47873067-47873291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:48251397-48251615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr14:48491619-48491402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr14:48495292-48495075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr14:48572297-48572525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:49995488-49995710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr14:50069141-50069365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-225
               
               
               Cow position:chr14:446223-446435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):111, 16

               
               
               Conread position:3-226
               
               
               Cow position:chr14:41219991-41220217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr14:11474265-11474488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:3-524
               
               
               Cow position:chr14:19317897-19317372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:4-221
               
               
               Cow position:chr14:8517566-8517352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:4-224
               
               
               Cow position:chr14:12483455-12483234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 106

               
               
               Conread position:4-224
               
               
               Cow position:chr14:34675154-34674933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:5-205
               
               
               Cow position:chr14:14786262-14786464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:162
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:5-224
               
               
               Cow position:chr14:1727201-1726979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr14:30664879-30665096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):24, 139

               
               
               Conread position:5-224
               
               
               Cow position:chr14:32471855-32472067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):91, 34

               
               
               Conread position:5-224
               
               
               Cow position:chr14:32583975-32584192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:5-226
               
               
               Cow position:chr14:35382444-35382657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:7-192
               
               
               Cow position:chr14:32580330-32580143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:7-224
               
               
               Cow position:chr14:24990226-24990447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):32, 105

               
               
               Conread position:8-224
               
               
               Cow position:chr14:34667799-34668016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 183

               
               
               Conread position:22-224
               
               
               Cow position:chr14:17757015-17757207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:22-224
               
               
               Cow position:chr14:49329006-49328805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:26-224
               
               
               Cow position:chr14:32500206-32500005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:36-224
               
               
               Cow position:chr14:8900252-8900443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):156, 6

               
               
               Conread position:37-121
               
               
               Cow position:chr14:40462640-40462725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:76
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:38-224
               
               
               Cow position:chr14:13683586-13683399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr14:748580-748765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:41-224
               
               
               Cow position:chr14:50145245-50145059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:153
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:44-226
               
               
               Cow position:chr14:26449508-26449689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 92

               
               
               Conread position:50-224
               
               
               Cow position:chr14:46224690-46224865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:53-221
               
               
               Cow position:chr14:44236650-44236483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:54-224
               
               
               Cow position:chr14:46636533-46636702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:225-540
               
               
               Cow position:chr14:45158453-45158139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:226-455
               
               
               Cow position:chr14:39723339-39723566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):101, 82

               
               
               Conread position:1-224
               
               
               Cow position:chr15:4859891-4860112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:1-224
               
               
               Cow position:chr15:33304733-33304949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):7, 76

               
               
               Conread position:1-224
               
               
               Cow position:chr15:39091144-39091361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:2-224
               
               
               Cow position:chr15:29884252-29884474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):34, 110

               
               
               Conread position:3-108
               
               
               Cow position:chr15:33975527-33975418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-116
               
               
               Cow position:chr15:21911240-21911351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-118
               
               
               Cow position:chr15:13072-13190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-126
               
               
               Cow position:chr15:15739020-15738894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-126
               
               
               Cow position:chr15:41793269-41793395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr15:36146219-36146092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr15:33335525-33335386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr15:37980723-37980864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr15:11596321-11596467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr15:44576459-44576313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr15:8576210-8576056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr15:9620340-9620494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr15:20944432-20944274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-160
               
               
               Cow position:chr15:8937471-8937311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:3-161
               
               
               Cow position:chr15:44260605-44260764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:3-163
               
               
               Cow position:chr15:6158245-6158082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-164
               
               
               Cow position:chr15:37744121-37743957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-169
               
               
               Cow position:chr15:17773288-17773458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-171
               
               
               Cow position:chr15:33455422-33455261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):93, 28

               
               
               Conread position:3-179
               
               
               Cow position:chr15:2617015-2617203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr15:20404622-20404801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr15:22096008-22096185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr15:49306855-49306673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr15:45211073-45210888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr15:22533092-22533281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 110

               
               
               Conread position:3-193
               
               
               Cow position:chr15:31768489-31768681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:3-193
               
               
               Cow position:chr15:41029258-41029451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-197
               
               
               Cow position:chr15:7512295-7512492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-205
               
               
               Cow position:chr15:4895327-4895520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-205
               
               
               Cow position:chr15:21453198-21452993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:3-205
               
               
               Cow position:chr15:21916160-21915962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:3-208
               
               
               Cow position:chr15:34140922-34141126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:3-210
               
               
               Cow position:chr15:6488828-6488620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:3-212
               
               
               Cow position:chr15:35416651-35416445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-214
               
               
               Cow position:chr15:4787740-4787952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-214
               
               
               Cow position:chr15:42727438-42727230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr15:442728-442942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:3-215
               
               
               Cow position:chr15:6367429-6367640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:3-215
               
               
               Cow position:chr15:7271400-7271184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr15:1329216-1329001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:3-217
               
               
               Cow position:chr15:18395-18183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):38, 29

               
               
               Conread position:3-217
               
               
               Cow position:chr15:3793147-3792931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:3-217
               
               
               Cow position:chr15:7841380-7841163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-219
               
               
               Cow position:chr15:2928319-2928101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 44

               
               
               Conread position:3-219
               
               
               Cow position:chr15:6588874-6589091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 134

               
               
               Conread position:3-219
               
               
               Cow position:chr15:6648355-6648568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:3-219
               
               
               Cow position:chr15:13286045-13286264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:3-219
               
               
               Cow position:chr15:44364296-44364512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:3-220
               
               
               Cow position:chr15:6464128-6463914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):33, 168

               
               
               Conread position:3-220
               
               
               Cow position:chr15:21662680-21662901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr15:28487068-28487288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr15:50142320-50142100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr15:67505-67719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:3-221
               
               
               Cow position:chr15:4769565-4769344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr15:12439798-12439587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):145, 36

               
               
               Conread position:3-221
               
               
               Cow position:chr15:13076580-13076360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-221
               
               
               Cow position:chr15:17296061-17295840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:3-221
               
               
               Cow position:chr15:18579783-18579566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-221
               
               
               Cow position:chr15:21607835-21607614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr15:32065228-32065448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 205

               
               
               Conread position:3-221
               
               
               Cow position:chr15:32490829-32491048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:3-221
               
               
               Cow position:chr15:35739292-35739080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-221
               
               
               Cow position:chr15:36423555-36423773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-221
               
               
               Cow position:chr15:36940322-36940542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-221
               
               
               Cow position:chr15:44378578-44378361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:3-224
               
               
               Cow position:chr15:29247-29471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:363916-364133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:3-224
               
               
               Cow position:chr15:561787-561566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr15:678122-677898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:1776222-1775998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 182

               
               
               Conread position:3-224
               
               
               Cow position:chr15:1785827-1785603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:2015531-2015311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 166

               
               
               Conread position:3-224
               
               
               Cow position:chr15:2080392-2080168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:2560480-2560256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:2644287-2644509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr15:2664447-2664225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:2899197-2899421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:3007778-3008001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 148

               
               
               Conread position:3-224
               
               
               Cow position:chr15:3892646-3892423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4077072-4077292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4082062-4081838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4122844-4122621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4139847-4140072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4214221-4214006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4218856-4219077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):93, 23

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4388808-4388584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4629185-4629409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4642261-4642040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4674394-4674170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4689094-4688870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 213

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4712968-4712744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4815607-4815396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-224
               
               
               Cow position:chr15:4829395-4829173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):27, 77

               
               
               Conread position:3-224
               
               
               Cow position:chr15:5002394-5002616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr15:5020423-5020209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr15:5197411-5197187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:5198016-5197792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:5498115-5497896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:3-224
               
               
               Cow position:chr15:5640530-5640754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:6120440-6120214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:6152583-6152807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:6164043-6164256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):36, 171

               
               
               Conread position:3-224
               
               
               Cow position:chr15:6550553-6550777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:6616859-6616635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:6658052-6658278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:6758416-6758640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:6805774-6805549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:7267662-7267438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:7319626-7319403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:7962981-7963198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):36, 76

               
               
               Conread position:3-224
               
               
               Cow position:chr15:7985366-7985590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:8028957-8029173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:3-224
               
               
               Cow position:chr15:9522138-9522363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:10736627-10736405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:3-224
               
               
               Cow position:chr15:11574956-11575174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):93, 128

               
               
               Conread position:3-224
               
               
               Cow position:chr15:12442586-12442362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:12859202-12858978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:13388287-13388510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:3-224
               
               
               Cow position:chr15:13430881-13430661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 180

               
               
               Conread position:3-224
               
               
               Cow position:chr15:13683395-13683180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr15:15344047-15344266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:3-224
               
               
               Cow position:chr15:17193502-17193726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:18214623-18214407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:3-224
               
               
               Cow position:chr15:18264700-18264925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:18661547-18661324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:19734738-19734962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:20348207-20348426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:3-224
               
               
               Cow position:chr15:20413635-20413412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 172

               
               
               Conread position:3-224
               
               
               Cow position:chr15:21152760-21152984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:21806910-21806686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:21830999-21830778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 187

               
               
               Conread position:3-224
               
               
               Cow position:chr15:21939962-21940186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:22759943-22760167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:22855496-22855719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr15:23774357-23774140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:3-224
               
               
               Cow position:chr15:25069433-25069657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:25133023-25132794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:25165043-25165267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:25463463-25463687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:26077785-26077571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr15:26158077-26157847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:3-224
               
               
               Cow position:chr15:27747459-27747683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:29273186-29273405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr15:31269813-31270034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr15:31357537-31357761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:32689868-32690089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr15:32714762-32714540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:3-224
               
               
               Cow position:chr15:33527508-33527722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:3-224
               
               
               Cow position:chr15:33753221-33753443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr15:34064015-34063793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr15:35643400-35643614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:35750236-35750459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:3-224
               
               
               Cow position:chr15:36329399-36329623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:36356008-36356232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:3-224
               
               
               Cow position:chr15:36622609-36622825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr15:37382528-37382752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:38684077-38684294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr15:42533111-42532887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:42597191-42597415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:42939972-42939748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:44073506-44073284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-224
               
               
               Cow position:chr15:45944634-45944859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr15:47201514-47201732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr15:50344675-50344893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-225
               
               
               Cow position:chr15:43267163-43266944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:3-225
               
               
               Cow position:chr15:45244657-45244435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-226
               
               
               Cow position:chr15:21825926-21825700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr15:37373066-37373290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:4-216
               
               
               Cow position:chr15:3721080-3721288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:4-220
               
               
               Cow position:chr15:6563952-6563734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:4-224
               
               
               Cow position:chr15:5983688-5983464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr15:7578221-7578003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):32, 121

               
               
               Conread position:4-224
               
               
               Cow position:chr15:9910042-9910264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 128

               
               
               Conread position:4-224
               
               
               Cow position:chr15:17074302-17074526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr15:17399031-17398808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr15:23666434-23666657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr15:26388909-26389126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:4-224
               
               
               Cow position:chr15:26933102-26932879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:5-169
               
               
               Cow position:chr15:28236036-28235871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 10

               
               
               Conread position:5-170
               
               
               Cow position:chr15:7981086-7981256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-194
               
               
               Cow position:chr15:47842146-47841955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:5-218
               
               
               Cow position:chr15:2021391-2021604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:5-221
               
               
               Cow position:chr15:25554198-25553982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:5-224
               
               
               Cow position:chr15:1298597-1298816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:5-224
               
               
               Cow position:chr15:6081752-6081539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:5-224
               
               
               Cow position:chr15:23561090-23560872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:5-224
               
               
               Cow position:chr15:26591288-26591509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:6-167
               
               
               Cow position:chr15:29811687-29811850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:6-210
               
               
               Cow position:chr15:1082496-1082282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:6-210
               
               
               Cow position:chr15:1128932-1129146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:6-218
               
               
               Cow position:chr15:16515265-16515053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:7-224
               
               
               Cow position:chr15:51910479-51910699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:9-224
               
               
               Cow position:chr15:4953376-4953164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:10-224
               
               
               Cow position:chr15:44297811-44298026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 99

               
               
               Conread position:11-224
               
               
               Cow position:chr15:29899383-29899176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):27, 7

               
               
               Conread position:19-204
               
               
               Cow position:chr15:7574844-7574658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:22-216
               
               
               Cow position:chr15:6065690-6065882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):16, 5

               
               
               Conread position:22-224
               
               
               Cow position:chr15:2952112-2952311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:22-224
               
               
               Cow position:chr15:35405012-35404812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:22-224
               
               
               Cow position:chr15:36671209-36671013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:23-199
               
               
               Cow position:chr15:29341079-29341250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:23-224
               
               
               Cow position:chr15:10477088-10477288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 64

               
               
               Conread position:24-224
               
               
               Cow position:chr15:24090868-24090665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr15:31585358-31585561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:25-217
               
               
               Cow position:chr15:3653040-3653232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):53, 136

               
               
               Conread position:35-224
               
               
               Cow position:chr15:2897974-2898160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:35-224
               
               
               Cow position:chr15:14573284-14573470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 75

               
               
               Conread position:35-224
               
               
               Cow position:chr15:17236848-17237036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 50

               
               
               Conread position:38-224
               
               
               Cow position:chr15:7058743-7058564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):58, 72

               
               
               Conread position:40-224
               
               
               Cow position:chr15:4728186-4728001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr15:7547889-7547705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):56, 175

               
               
               Conread position:40-224
               
               
               Cow position:chr15:18230087-18229902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:41-224
               
               
               Cow position:chr15:30984590-30984408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 69

               
               
               Conread position:43-224
               
               
               Cow position:chr15:38983680-38983498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:54-220
               
               
               Cow position:chr15:60633-60473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:234-545
               
               
               Cow position:chr15:4957942-4957629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):102, 92

               
               
               Conread position:2-224
               
               
               Cow position:chr16:46555136-46554911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-122
               
               
               Cow position:chr16:26868043-26868165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-126
               
               
               Cow position:chr16:35342788-35342914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-126
               
               
               Cow position:chr16:44450656-44450529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr16:6389943-6390070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr16:47247785-47247658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-131
               
               
               Cow position:chr16:49096677-49096546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-133
               
               
               Cow position:chr16:23059374-23059507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr16:39457098-39456963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-143
               
               
               Cow position:chr16:20502748-20502605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr16:5352488-5352629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:3-160
               
               
               Cow position:chr16:2224237-2224396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-160
               
               
               Cow position:chr16:19062549-19062389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr16:32118292-32118131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-163
               
               
               Cow position:chr16:26658678-26658515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-166
               
               
               Cow position:chr16:23403527-23403361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-171
               
               
               Cow position:chr16:23772962-23773133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-171
               
               
               Cow position:chr16:45654868-45655039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-174
               
               
               Cow position:chr16:37388085-37388258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-190
               
               
               Cow position:chr16:5350795-5350985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr16:8871730-8871917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:3-196
               
               
               Cow position:chr16:54703209-54703014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:158
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 138

               
               
               Conread position:3-198
               
               
               Cow position:chr16:23563161-23562969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:3-199
               
               
               Cow position:chr16:29539098-29539293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:3-202
               
               
               Cow position:chr16:819678-819482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-202
               
               
               Cow position:chr16:26975489-26975690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-202
               
               
               Cow position:chr16:45754918-45755108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:3-202
               
               
               Cow position:chr16:48371390-48371592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-204
               
               
               Cow position:chr16:44256423-44256622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:3-215
               
               
               Cow position:chr16:49742817-49743027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-216
               
               
               Cow position:chr16:5416563-5416779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:3-216
               
               
               Cow position:chr16:7541195-7540980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-216
               
               
               Cow position:chr16:27593109-27593325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr16:47367699-47367487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 193

               
               
               Conread position:3-216
               
               
               Cow position:chr16:54287254-54287034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:3-217
               
               
               Cow position:chr16:49253539-49253747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:3-219
               
               
               Cow position:chr16:20201786-20201565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:3-220
               
               
               Cow position:chr16:193225-193442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:3-220
               
               
               Cow position:chr16:2408179-2408401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr16:15409372-15409596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:3-220
               
               
               Cow position:chr16:25088324-25088102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr16:25743414-25743198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 121

               
               
               Conread position:3-220
               
               
               Cow position:chr16:41515847-41515625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):13, 87

               
               
               Conread position:3-220
               
               
               Cow position:chr16:47772977-47772753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-221
               
               
               Cow position:chr16:658663-658452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr16:2724511-2724732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr16:4367333-4367117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:3-221
               
               
               Cow position:chr16:7467321-7467104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):93, 69

               
               
               Conread position:3-221
               
               
               Cow position:chr16:25964616-25964403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:3-221
               
               
               Cow position:chr16:40293457-40293678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 148

               
               
               Conread position:3-221
               
               
               Cow position:chr16:43562683-43562903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr16:48411348-48411127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr16:54179651-54179872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-222
               
               
               Cow position:chr16:44049211-44049432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr16:417608-417384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:701972-701750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:1563675-1563899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:1734452-1734227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:2305074-2304849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:2960392-2960168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:3349721-3349499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr16:4398966-4398746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr16:4426803-4426580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:4972814-4973036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:3-224
               
               
               Cow position:chr16:5435538-5435314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:5488584-5488360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:5665814-5665590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:5833511-5833290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 143

               
               
               Conread position:3-224
               
               
               Cow position:chr16:6677434-6677210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:6706002-6706226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:7155313-7155093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):93, 25

               
               
               Conread position:3-224
               
               
               Cow position:chr16:7303469-7303245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:7385478-7385254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:7457273-7457493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr16:7673748-7673972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:8813392-8813614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 134

               
               
               Conread position:3-224
               
               
               Cow position:chr16:10372723-10372945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:3-224
               
               
               Cow position:chr16:10440952-10440728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:10859614-10859838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:11054703-11054480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:3-224
               
               
               Cow position:chr16:11633131-11633355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:12160570-12160791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:3-224
               
               
               Cow position:chr16:12244332-12244552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:3-224
               
               
               Cow position:chr16:12485587-12485811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:12535241-12535459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:3-224
               
               
               Cow position:chr16:12651641-12651417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:13721876-13722100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:14040138-14039914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:14351971-14352193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr16:14569486-14569708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:15187777-15187557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr16:15255769-15255980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr16:15349441-15349658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:3-224
               
               
               Cow position:chr16:15485503-15485280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:15495166-15494947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 168

               
               
               Conread position:3-224
               
               
               Cow position:chr16:15570483-15570258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:15979665-15979889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:16095914-16095688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:16150035-16150259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:16540119-16539898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-224
               
               
               Cow position:chr16:16680882-16681106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:18212482-18212706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:18650871-18651093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr16:18745327-18745541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):35, 8

               
               
               Conread position:3-224
               
               
               Cow position:chr16:18975581-18975357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:20204712-20204493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr16:20278553-20278329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:20378158-20377942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:3-224
               
               
               Cow position:chr16:21018272-21018048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:21189971-21189747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:23249242-23249466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:23533287-23533510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-224
               
               
               Cow position:chr16:23711574-23711798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:23986026-23985802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:24240687-24240911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:24615362-24615576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:3-224
               
               
               Cow position:chr16:24636801-24637025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:24987791-24988015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:25075306-25075082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:25344692-25344467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:25880029-25879805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:26627465-26627241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:26666417-26666193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:26990227-26990451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:27013110-27012891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:3-224
               
               
               Cow position:chr16:27730668-27730892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:28193588-28193811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:3-224
               
               
               Cow position:chr16:28268003-28268226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr16:28468410-28468634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:29050358-29050133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 179

               
               
               Conread position:3-224
               
               
               Cow position:chr16:31585989-31586211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:3-224
               
               
               Cow position:chr16:34482870-34482654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr16:37454771-37454992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr16:37925272-37925496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-224
               
               
               Cow position:chr16:39033632-39033844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):33, 176

               
               
               Conread position:3-224
               
               
               Cow position:chr16:40879305-40879081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:41164061-41164282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr16:41623977-41624191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr16:42074185-42074410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:42211209-42210985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:42733573-42733796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:3-224
               
               
               Cow position:chr16:45465204-45465428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:45534175-45533951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:46101906-46102128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 148

               
               
               Conread position:3-224
               
               
               Cow position:chr16:47404093-47403871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr16:49142360-49142584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr16:49219240-49219460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:3-224
               
               
               Cow position:chr16:49516069-49516295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:3-224
               
               
               Cow position:chr16:49780237-49780461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:50190405-50190625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr16:50712726-50712950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:51087496-51087273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 181

               
               
               Conread position:3-224
               
               
               Cow position:chr16:51400848-51401058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr16:52526944-52526722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr16:54231635-54231853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:3-224
               
               
               Cow position:chr16:54322710-54322929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr16:55682213-55682002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:3-224
               
               
               Cow position:chr16:55868033-55867817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):93, 23

               
               
               Conread position:3-226
               
               
               Cow position:chr16:23810230-23810008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:3-226
               
               
               Cow position:chr16:28206398-28206624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-229
               
               
               Cow position:chr16:29093834-29093605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:4-118
               
               
               Cow position:chr16:22320577-22320694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-189
               
               
               Cow position:chr16:44676066-44675877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:154
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-215
               
               
               Cow position:chr16:25935458-25935244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr16:3148328-3148547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 143

               
               
               Conread position:4-224
               
               
               Cow position:chr16:18694253-18694483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):27, 92

               
               
               Conread position:4-224
               
               
               Cow position:chr16:23065720-23065492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:4-224
               
               
               Cow position:chr16:25444588-25444366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 190

               
               
               Conread position:4-224
               
               
               Cow position:chr16:29036585-29036366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:4-224
               
               
               Cow position:chr16:43770444-43770662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:4-224
               
               
               Cow position:chr16:45704085-45704305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:4-224
               
               
               Cow position:chr16:53509815-53510035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:4-225
               
               
               Cow position:chr16:12736992-12736768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:5-179
               
               
               Cow position:chr16:45560004-45559827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-221
               
               
               Cow position:chr16:37058304-37058517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):91, 155

               
               
               Conread position:5-224
               
               
               Cow position:chr16:41245-41023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr16:5763549-5763335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:5-224
               
               
               Cow position:chr16:13601931-13602148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 67

               
               
               Conread position:5-224
               
               
               Cow position:chr16:32326574-32326353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):39, 170

               
               
               Conread position:5-224
               
               
               Cow position:chr16:36247181-36246962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 170

               
               
               Conread position:6-156
               
               
               Cow position:chr16:51236095-51236244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:6-217
               
               
               Cow position:chr16:46571867-46572080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:6-220
               
               
               Cow position:chr16:34533000-34532787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:6-224
               
               
               Cow position:chr16:37478151-37478371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 209

               
               
               Conread position:7-224
               
               
               Cow position:chr16:37445995-37446209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:7-224
               
               
               Cow position:chr16:47018045-47018260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 80

               
               
               Conread position:19-224
               
               
               Cow position:chr16:26388471-26388676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):20, 134

               
               
               Conread position:19-226
               
               
               Cow position:chr16:37486558-37486770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):21, 94

               
               
               Conread position:21-224
               
               
               Cow position:chr16:3820057-3819853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:22-215
               
               
               Cow position:chr16:42751839-42751648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):17, 52

               
               
               Conread position:22-224
               
               
               Cow position:chr16:17142097-17141894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:22-224
               
               
               Cow position:chr16:52856144-52856346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):17, 141

               
               
               Conread position:24-224
               
               
               Cow position:chr16:43852-43651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 88

               
               
               Conread position:24-224
               
               
               Cow position:chr16:4343214-4343416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):20, 114

               
               
               Conread position:26-224
               
               
               Cow position:chr16:19081742-19081541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:31-224
               
               
               Cow position:chr16:20968269-20968458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):65, 116

               
               
               Conread position:34-228
               
               
               Cow position:chr16:5895124-5894930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):7, 101

               
               
               Conread position:37-226
               
               
               Cow position:chr16:25042730-25042539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:38-221
               
               
               Cow position:chr16:17111994-17111810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:148
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:39-224
               
               
               Cow position:chr16:23875864-23876051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:39-224
               
               
               Cow position:chr16:39475503-39475319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):57, 71

               
               
               Conread position:40-224
               
               
               Cow position:chr16:3769337-3769522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr16:4756697-4756514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:41-221
               
               
               Cow position:chr16:5756601-5756424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:147
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:41-224
               
               
               Cow position:chr16:46365129-46365313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:44-220
               
               
               Cow position:chr16:14662438-14662615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:49-224
               
               
               Cow position:chr16:37146638-37146466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:49-224
               
               
               Cow position:chr16:43802018-43801854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 47

               
               
               Conread position:50-224
               
               
               Cow position:chr16:4461648-4461822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):46, 115

               
               
               Conread position:217-535
               
               
               Cow position:chr16:25292831-25292510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):7, 117

               
               
               Conread position:225-525
               
               
               Cow position:chr16:41759602-41759890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):127, 146

               
               
               Conread position:225-540
               
               
               Cow position:chr16:25083400-25083079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):102, 83

               
               
               Conread position:236-540
               
               
               Cow position:chr16:25083925-25083622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):101, 66

               
               
               Conread position:1-125
               
               
               Cow position:chr17:979908-980037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1-224
               
               
               Cow position:chr17:15351315-15351096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:1-224
               
               
               Cow position:chr17:44482124-44481893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):5, 85

               
               
               Conread position:1-227
               
               
               Cow position:chr17:2698831-2698599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:2-217
               
               
               Cow position:chr17:29212906-29212689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):37, 160

               
               
               Conread position:2-220
               
               
               Cow position:chr17:5380226-5380008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 111

               
               
               Conread position:2-224
               
               
               Cow position:chr17:18123402-18123622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:2-224
               
               
               Cow position:chr17:21770954-21770729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:2-224
               
               
               Cow position:chr17:36266000-36266210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):142, 16

               
               
               Conread position:3-98
               
               
               Cow position:chr17:18721353-18721450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:85
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr17:15094189-15094316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-138
               
               
               Cow position:chr17:13725537-13725399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr17:25834690-25834544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr17:42313157-42313011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-150
               
               
               Cow position:chr17:12290213-12290364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr17:18421658-18421504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-163
               
               
               Cow position:chr17:24876731-24876888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:3-166
               
               
               Cow position:chr17:1877750-1877916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr17:15558845-15558667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-177
               
               
               Cow position:chr17:16505474-16505651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr17:8449984-8449808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-198
               
               
               Cow position:chr17:254366-254173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:3-199
               
               
               Cow position:chr17:2201570-2201371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr17:22774190-22774376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:3-202
               
               
               Cow position:chr17:38829153-38828954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:3-203
               
               
               Cow position:chr17:21716735-21716532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr17:2179115-2178913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:3-210
               
               
               Cow position:chr17:2521167-2521377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr17:11913476-11913691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-216
               
               
               Cow position:chr17:2839295-2839082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-216
               
               
               Cow position:chr17:15118090-15117874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr17:23321147-23321359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):36, 186

               
               
               Conread position:3-217
               
               
               Cow position:chr17:43471318-43471535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-219
               
               
               Cow position:chr17:16447209-16447424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-219
               
               
               Cow position:chr17:21304562-21304342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr17:20225875-20225655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr17:144934-145146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:3-221
               
               
               Cow position:chr17:158559-158339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:3-221
               
               
               Cow position:chr17:4211202-4210981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:3-221
               
               
               Cow position:chr17:4480610-4480830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-221
               
               
               Cow position:chr17:29824687-29824909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 137

               
               
               Conread position:3-221
               
               
               Cow position:chr17:29897912-29897695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-221
               
               
               Cow position:chr17:31426027-31425808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:3-221
               
               
               Cow position:chr17:36284540-36284319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:184420-184196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:1311490-1311713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr17:1457107-1457327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr17:1568947-1569165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):35, 148

               
               
               Conread position:3-224
               
               
               Cow position:chr17:1970424-1970200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:2265461-2265238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:3-224
               
               
               Cow position:chr17:2583660-2583441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr17:4635510-4635726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 28

               
               
               Conread position:3-224
               
               
               Cow position:chr17:5043319-5043544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):24, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr17:5806216-5806440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:6071814-6071584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:6123056-6122832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:6263127-6262905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:6612295-6612071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:8205224-8204995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):36, 145

               
               
               Conread position:3-224
               
               
               Cow position:chr17:8212329-8212110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:3-224
               
               
               Cow position:chr17:8222978-8222754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:11032422-11032200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 134

               
               
               Conread position:3-224
               
               
               Cow position:chr17:11083862-11084086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:14243099-14242878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 184

               
               
               Conread position:3-224
               
               
               Cow position:chr17:14249832-14250059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:14871956-14871732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:15328554-15328330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:15439064-15438840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:15708720-15708944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:15854008-15853783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:16118192-16118410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:3-224
               
               
               Cow position:chr17:16854824-16855048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr17:16903852-16903634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):38, 145

               
               
               Conread position:3-224
               
               
               Cow position:chr17:17128277-17128054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:17221586-17221364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):17, 161

               
               
               Conread position:3-224
               
               
               Cow position:chr17:18099801-18100025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:18198627-18198403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr17:18777556-18777781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:19369716-19369493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 62

               
               
               Conread position:3-224
               
               
               Cow position:chr17:20078402-20078618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:3-224
               
               
               Cow position:chr17:20084538-20084764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr17:20391047-20390823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:21666272-21666053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr17:21767167-21766946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:3-224
               
               
               Cow position:chr17:22248979-22249203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:22563417-22563194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:24785463-24785239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:25739569-25739345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:27978376-27978160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr17:29079630-29079429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:29156646-29156427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr17:29950485-29950264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr17:30182308-30182531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr17:33792344-33792132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:3-224
               
               
               Cow position:chr17:34235978-34236202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr17:38992025-38991802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr17:39823921-39824145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr17:1672571-1672346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-227
               
               
               Cow position:chr17:14232431-14232658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-221
               
               
               Cow position:chr17:18591685-18591474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:4-224
               
               
               Cow position:chr17:1784273-1784492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):106, 31

               
               
               Conread position:4-224
               
               
               Cow position:chr17:17957869-17957646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:5-127
               
               
               Cow position:chr17:25551423-25551548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-179
               
               
               Cow position:chr17:22134466-22134291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:5-215
               
               
               Cow position:chr17:16870026-16870219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:5-221
               
               
               Cow position:chr17:14212748-14212966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-229
               
               
               Cow position:chr17:453117-452896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:6-219
               
               
               Cow position:chr17:29041633-29041845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):91, 104

               
               
               Conread position:6-224
               
               
               Cow position:chr17:4570482-4570262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:6-224
               
               
               Cow position:chr17:40811021-40810800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:14-224
               
               
               Cow position:chr17:28024640-28024853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:18-221
               
               
               Cow position:chr17:29471695-29471491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:22-224
               
               
               Cow position:chr17:37415634-37415839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:23-221
               
               
               Cow position:chr17:1883497-1883313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:25-224
               
               
               Cow position:chr17:148164-147971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:25-224
               
               
               Cow position:chr17:20055369-20055176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):95, 9

               
               
               Conread position:28-157
               
               
               Cow position:chr17:37699465-37699589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:35-224
               
               
               Cow position:chr17:3305815-3305624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):61, 75

               
               
               Conread position:44-224
               
               
               Cow position:chr17:14006654-14006476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:44-227
               
               
               Cow position:chr17:14932637-14932821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1-221
               
               
               Cow position:chr18:26335666-26335882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:1-224
               
               
               Cow position:chr18:52462576-52462804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 193

               
               
               Conread position:3-105
               
               
               Cow position:chr18:7953140-7953035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-113
               
               
               Cow position:chr18:4954646-4954533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-113
               
               
               Cow position:chr18:7951382-7951275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:3-127
               
               
               Cow position:chr18:42628860-42628733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-136
               
               
               Cow position:chr18:24219196-24219332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr18:26305768-26305624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-146
               
               
               Cow position:chr18:7358915-7358769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-151
               
               
               Cow position:chr18:21580058-21580209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-152
               
               
               Cow position:chr18:32122187-32122336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:3-154
               
               
               Cow position:chr18:51580289-51580443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-156
               
               
               Cow position:chr18:35013154-35013308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:3-159
               
               
               Cow position:chr18:36223930-36223780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-162
               
               
               Cow position:chr18:29240815-29240655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:3-163
               
               
               Cow position:chr18:27193999-27193842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:3-167
               
               
               Cow position:chr18:19462966-19463133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-169
               
               
               Cow position:chr18:51272640-51272805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-171
               
               
               Cow position:chr18:55700023-55700194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:3-174
               
               
               Cow position:chr18:55436638-55436812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr18:20151103-20150929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:3-177
               
               
               Cow position:chr18:46869644-46869475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:3-179
               
               
               Cow position:chr18:42609180-42609359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr18:3190240-3190056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-195
               
               
               Cow position:chr18:42242851-42243042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-202
               
               
               Cow position:chr18:2853292-2853501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:3-204
               
               
               Cow position:chr18:45978872-45978674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:3-215
               
               
               Cow position:chr18:45980992-45980784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:3-217
               
               
               Cow position:chr18:30035233-30035450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:3-217
               
               
               Cow position:chr18:51698136-51697925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 157

               
               
               Conread position:3-218
               
               
               Cow position:chr18:37692789-37693009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:3-221
               
               
               Cow position:chr18:8965787-8965586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr18:27990253-27990032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr18:33272130-33271912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:3-221
               
               
               Cow position:chr18:38158046-38158267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr18:47745249-47745028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr18:51485083-51484866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:3-224
               
               
               Cow position:chr18:602968-603192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:1022526-1022747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:3-224
               
               
               Cow position:chr18:4890008-4889789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr18:4949654-4949415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr18:6733469-6733691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr18:10221188-10221412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:10292227-10292003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:14127790-14128014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:16094381-16094157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:16173117-16173341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:16463150-16463374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:17323871-17323652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:3-224
               
               
               Cow position:chr18:17335245-17335468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr18:18215517-18215741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:23659399-23659622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:23688668-23688444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:23802519-23802295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:24037350-24037574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:25355017-25354789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):33, 177

               
               
               Conread position:3-224
               
               
               Cow position:chr18:29071917-29071693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:29863108-29863332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:30607192-30606968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:32164435-32164659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:33406804-33406580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:33522714-33522499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:3-224
               
               
               Cow position:chr18:35057521-35057298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr18:36512130-36511906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:36648890-36648677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:3-224
               
               
               Cow position:chr18:37509458-37509240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr18:39002633-39002838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr18:40484495-40484272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:3-224
               
               
               Cow position:chr18:41837594-41837818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:43464276-43464501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):36, 141

               
               
               Conread position:3-224
               
               
               Cow position:chr18:50092948-50093172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:51459349-51459569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:3-224
               
               
               Cow position:chr18:51602169-51602393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:51654091-51653872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr18:51690293-51690069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:52574597-52574387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:3-224
               
               
               Cow position:chr18:52656290-52656079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:3-224
               
               
               Cow position:chr18:53872388-53872165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr18:54033204-54032990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:3-224
               
               
               Cow position:chr18:54047375-54047151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:54065578-54065800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:3-224
               
               
               Cow position:chr18:55554747-55554523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr18:56483170-56483392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:3-226
               
               
               Cow position:chr18:14419473-14419247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr18:26242963-26243188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr18:36776772-36776546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 181

               
               
               Conread position:3-242
               
               
               Cow position:chr18:16025161-16025404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:4-126
               
               
               Cow position:chr18:32210317-32210445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-186
               
               
               Cow position:chr18:7050080-7049895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-198
               
               
               Cow position:chr18:33498481-33498672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 9

               
               
               Conread position:4-217
               
               
               Cow position:chr18:33851024-33850809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-219
               
               
               Cow position:chr18:21797588-21797369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 121

               
               
               Conread position:4-221
               
               
               Cow position:chr18:10896683-10896469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:4-221
               
               
               Cow position:chr18:36457747-36457533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:4-224
               
               
               Cow position:chr18:13508574-13508789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:4-224
               
               
               Cow position:chr18:16045837-16046052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:4-224
               
               
               Cow position:chr18:16226717-16226504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:4-224
               
               
               Cow position:chr18:17944007-17943784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr18:23701308-23701526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:4-224
               
               
               Cow position:chr18:27539927-27539704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr18:36187898-36188118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:4-224
               
               
               Cow position:chr18:43473092-43472870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:4-224
               
               
               Cow position:chr18:55136981-55137197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:5-113
               
               
               Cow position:chr18:51345782-51345671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-124
               
               
               Cow position:chr18:29059327-29059447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:5-216
               
               
               Cow position:chr18:22412885-22412661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 197

               
               
               Conread position:5-224
               
               
               Cow position:chr18:28968795-28969017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr18:30876779-30876993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr18:33503359-33503573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 121

               
               
               Conread position:5-224
               
               
               Cow position:chr18:37582964-37583185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:6-219
               
               
               Cow position:chr18:43430498-43430283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:6-224
               
               
               Cow position:chr18:52458040-52458262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 125

               
               
               Conread position:6-224
               
               
               Cow position:chr18:55139644-55139858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):160, 94

               
               
               Conread position:7-221
               
               
               Cow position:chr18:47985382-47985172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:19-227
               
               
               Cow position:chr18:52479527-52479328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:22-224
               
               
               Cow position:chr18:52461041-52461238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:25-224
               
               
               Cow position:chr18:14479556-14479356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):21, 10

               
               
               Conread position:25-224
               
               
               Cow position:chr18:50834911-50835113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:26-224
               
               
               Cow position:chr18:32436629-32436829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):15, 165

               
               
               Conread position:27-224
               
               
               Cow position:chr18:30232086-30232286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:28-221
               
               
               Cow position:chr18:14965756-14965560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 84

               
               
               Conread position:43-224
               
               
               Cow position:chr18:21303956-21303773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 67

               
               
               Conread position:200-454
               
               
               Cow position:chr18:52444645-52444898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):204, 21

               
               
               Conread position:212-540
               
               
               Cow position:chr18:16660696-16661020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 9

               
               
               Conread position:225-535
               
               
               Cow position:chr18:52425062-52425370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):138, 16

               
               
               Conread position:226-543
               
               
               Cow position:chr18:33749851-33749533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 120

               
               
               Conread position:1-222
               
               
               Cow position:chr19:55421546-55421326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:1-224
               
               
               Cow position:chr19:50561569-50561344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:3-110
               
               
               Cow position:chr19:20433741-20433846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:3-113
               
               
               Cow position:chr19:19501189-19501303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:3-126
               
               
               Cow position:chr19:20928678-20928552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr19:23463590-23463717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr19:50833401-50833527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-129
               
               
               Cow position:chr19:52147924-52148053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-142
               
               
               Cow position:chr19:54542491-54542631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:3-145
               
               
               Cow position:chr19:15796926-15796781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr19:14180499-14180652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:3-158
               
               
               Cow position:chr19:30237210-30237054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr19:26518829-26518996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr19:50020461-50020639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-201
               
               
               Cow position:chr19:35782895-35783096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:3-202
               
               
               Cow position:chr19:12601202-12601399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):36, 114

               
               
               Conread position:3-202
               
               
               Cow position:chr19:42866967-42866765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:3-205
               
               
               Cow position:chr19:28575896-28576102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-205
               
               
               Cow position:chr19:36395688-36395483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-209
               
               
               Cow position:chr19:45464635-45464427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-210
               
               
               Cow position:chr19:7078758-7078548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-212
               
               
               Cow position:chr19:20672093-20672305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-212
               
               
               Cow position:chr19:36189200-36188997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 149

               
               
               Conread position:3-217
               
               
               Cow position:chr19:3406682-3406465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-219
               
               
               Cow position:chr19:32140499-32140280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:3-220
               
               
               Cow position:chr19:3086294-3086075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-221
               
               
               Cow position:chr19:34905823-34906044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 176

               
               
               Conread position:3-221
               
               
               Cow position:chr19:39339568-39339787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:41835-41611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:208002-207778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:255625-255847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr19:743214-743424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:3-224
               
               
               Cow position:chr19:777014-776791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr19:930321-930097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:1152156-1151940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr19:1293852-1293628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:1581407-1581631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:1663569-1663350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr19:2269799-2270023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:3221613-3221384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr19:4389082-4388861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 144

               
               
               Conread position:3-224
               
               
               Cow position:chr19:4447717-4447492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:5044195-5044404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:3-224
               
               
               Cow position:chr19:5732997-5732773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:5902529-5902305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:7480441-7480656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr19:7491592-7491365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:3-224
               
               
               Cow position:chr19:9118312-9118088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:9704690-9704908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-224
               
               
               Cow position:chr19:10613730-10613506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:12209428-12209656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:12652377-12652148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:14156605-14156825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 145

               
               
               Conread position:3-224
               
               
               Cow position:chr19:14157910-14157692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr19:19389336-19389112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:20403785-20403562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr19:20611836-20611612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:22391719-22391495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:23488261-23488039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:3-224
               
               
               Cow position:chr19:24734639-24734421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:3-224
               
               
               Cow position:chr19:27081913-27082136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 151

               
               
               Conread position:3-224
               
               
               Cow position:chr19:28596878-28596654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:28794829-28795047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):33, 141

               
               
               Conread position:3-224
               
               
               Cow position:chr19:28912031-28911809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-224
               
               
               Cow position:chr19:29367030-29366806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:29624538-29624314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:30037405-30037629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:30515540-30515749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr19:30937718-30937952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:33119222-33119446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:33528349-33528125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:33876918-33876694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:33945068-33944845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 181

               
               
               Conread position:3-224
               
               
               Cow position:chr19:37844286-37844502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:3-224
               
               
               Cow position:chr19:39182038-39182262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:40016090-40016308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:3-224
               
               
               Cow position:chr19:40248279-40248055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 142

               
               
               Conread position:3-224
               
               
               Cow position:chr19:40790853-40791078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:40848987-40849211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:41204725-41204949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:46873523-46873747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr19:48626561-48626337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr19:55378395-55378173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-226
               
               
               Cow position:chr19:21337403-21337630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr19:35781378-35781152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-291
               
               
               Cow position:chr19:36351770-36351477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:4-219
               
               
               Cow position:chr19:33648824-33649041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:4-224
               
               
               Cow position:chr19:2588683-2588467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):92, 30

               
               
               Conread position:4-224
               
               
               Cow position:chr19:28610869-28610655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:4-224
               
               
               Cow position:chr19:48534229-48534006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:5-178
               
               
               Cow position:chr19:6556121-6555945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr19:5026692-5026914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr19:28450315-28450103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:9-224
               
               
               Cow position:chr19:267600-267384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:22-147
               
               
               Cow position:chr19:33616273-33616145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr19:175949-175746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:25-218
               
               
               Cow position:chr19:27613023-27613219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:28-184
               
               
               Cow position:chr19:14528303-14528148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:28-224
               
               
               Cow position:chr19:2019286-2019485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:28-224
               
               
               Cow position:chr19:17883440-17883243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:40-224
               
               
               Cow position:chr19:33573257-33573439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 148

               
               
               Conread position:41-154
               
               
               Cow position:chr19:49360240-49360352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 69

               
               
               Conread position:43-224
               
               
               Cow position:chr19:7472519-7472338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):54, 67

               
               
               Conread position:48-221
               
               
               Cow position:chr19:730539-730710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:220-387
               
               
               Cow position:chr19:20111991-20112156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:253-517
               
               
               Cow position:chr19:76923-77189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):74, 82

               
               
               Conread position:271-540
               
               
               Cow position:chr19:260252-259983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):206, 58

               
               
               Conread position:313-540
               
               
               Cow position:chr19:39685248-39685026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:373-543
               
               
               Cow position:chr19:20112371-20112542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:1-214
               
               
               Cow position:chr2:33869692-33869477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 90

               
               
               Conread position:1-215
               
               
               Cow position:chr2:11689314-11689095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 24

               
               
               Conread position:1-224
               
               
               Cow position:chr2:16319385-16319159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):29, 175

               
               
               Conread position:1-224
               
               
               Cow position:chr2:55876590-55876367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:3-95
               
               
               Cow position:chr2:31124961-31124867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-112
               
               
               Cow position:chr2:76984965-76985077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-113
               
               
               Cow position:chr2:80893126-80893239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-117
               
               
               Cow position:chr2:53485888-53486003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-118
               
               
               Cow position:chr2:67634976-67635094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-122
               
               
               Cow position:chr2:54148233-54148111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr2:60051523-60051650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-128
               
               
               Cow position:chr2:28725423-28725297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:3-130
               
               
               Cow position:chr2:5318090-5317961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr2:10692438-10692577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr2:56365999-56366138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-142
               
               
               Cow position:chr2:18673793-18673651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-143
               
               
               Cow position:chr2:34572279-34572422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr2:56007696-56007550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-150
               
               
               Cow position:chr2:36435206-36435058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 146

               
               
               Conread position:3-150
               
               
               Cow position:chr2:36467354-36467206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 146

               
               
               Conread position:3-153
               
               
               Cow position:chr2:15686345-15686192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr2:78749727-78749574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:3-157
               
               
               Cow position:chr2:6593655-6593498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-163
               
               
               Cow position:chr2:24436144-24436308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:3-163
               
               
               Cow position:chr2:52857367-52857530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr2:12747450-12747279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr2:31501376-31501208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-169
               
               
               Cow position:chr2:16497172-16497336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:3-173
               
               
               Cow position:chr2:37008610-37008438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-175
               
               
               Cow position:chr2:15884928-15885103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr2:30657410-30657585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr2:38512935-38512760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr2:34573673-34573497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:3-179
               
               
               Cow position:chr2:4931216-4931395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr2:33402957-33403130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-182
               
               
               Cow position:chr2:52128388-52128570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr2:48749822-48750011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr2:28611896-28612078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:3-189
               
               
               Cow position:chr2:14825448-14825267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):128, 31

               
               
               Conread position:3-193
               
               
               Cow position:chr2:6883214-6883033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:3-193
               
               
               Cow position:chr2:12694727-12694920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-193
               
               
               Cow position:chr2:32409317-32409499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-196
               
               
               Cow position:chr2:50812293-50812100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:158
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-198
               
               
               Cow position:chr2:5241710-5241908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr2:66218345-66218533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:3-202
               
               
               Cow position:chr2:38207077-38207279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-203
               
               
               Cow position:chr2:42839132-42839333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:3-209
               
               
               Cow position:chr2:19809542-19809333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:3-209
               
               
               Cow position:chr2:41045921-41046126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-209
               
               
               Cow position:chr2:44189375-44189166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-210
               
               
               Cow position:chr2:41300755-41300545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-211
               
               
               Cow position:chr2:21407418-21407208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:3-212
               
               
               Cow position:chr2:31499172-31498963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):93, 107

               
               
               Conread position:3-214
               
               
               Cow position:chr2:11705589-11705375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:3-215
               
               
               Cow position:chr2:68191407-68191618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-215
               
               
               Cow position:chr2:72963414-72963620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 20

               
               
               Conread position:3-216
               
               
               Cow position:chr2:36058499-36058712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 180

               
               
               Conread position:3-217
               
               
               Cow position:chr2:12330870-12330659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:3-219
               
               
               Cow position:chr2:15572122-15572334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:3-219
               
               
               Cow position:chr2:27146163-27146381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:3-219
               
               
               Cow position:chr2:36073907-36074113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:3-219
               
               
               Cow position:chr2:86349234-86349015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr2:6064543-6064760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 158

               
               
               Conread position:3-220
               
               
               Cow position:chr2:11153035-11153255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr2:18520876-18521088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 88

               
               
               Conread position:3-221
               
               
               Cow position:chr2:2590746-2590960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:3-221
               
               
               Cow position:chr2:4795948-4795730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:3-221
               
               
               Cow position:chr2:4923086-4923308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:3-221
               
               
               Cow position:chr2:5867373-5867583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-221
               
               
               Cow position:chr2:7905886-7905670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:3-221
               
               
               Cow position:chr2:9688356-9688576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 172

               
               
               Conread position:3-221
               
               
               Cow position:chr2:9700470-9700249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr2:11961984-11961765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-221
               
               
               Cow position:chr2:13603304-13603086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:3-221
               
               
               Cow position:chr2:20879362-20879562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):94, 30

               
               
               Conread position:3-221
               
               
               Cow position:chr2:20977979-20977764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-221
               
               
               Cow position:chr2:24928329-24928108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr2:32417685-32417896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:3-221
               
               
               Cow position:chr2:33080831-33081052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr2:45917826-45918047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr2:46272276-46272496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 107

               
               
               Conread position:3-221
               
               
               Cow position:chr2:50407048-50406838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 82

               
               
               Conread position:3-221
               
               
               Cow position:chr2:50417953-50417737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:3-221
               
               
               Cow position:chr2:53497716-53497933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-221
               
               
               Cow position:chr2:55481280-55481494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:3-221
               
               
               Cow position:chr2:72692722-72692502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):30, 208

               
               
               Conread position:3-224
               
               
               Cow position:chr2:104798-105021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:209160-209384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:243400-243623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:279303-279522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:3-224
               
               
               Cow position:chr2:981946-981722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:1693854-1693630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:2059404-2059628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 131

               
               
               Conread position:3-224
               
               
               Cow position:chr2:2181327-2181549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:2409900-2410119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:3-224
               
               
               Cow position:chr2:2558380-2558602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr2:3669006-3668782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:4017659-4017870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:4180171-4180395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:4451104-4451328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:4833373-4833596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 148

               
               
               Conread position:3-224
               
               
               Cow position:chr2:5606348-5606124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:5797859-5798082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 155

               
               
               Conread position:3-224
               
               
               Cow position:chr2:5917224-5917011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr2:5997773-5997551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 164

               
               
               Conread position:3-224
               
               
               Cow position:chr2:6528774-6528550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:7370613-7370389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:7506638-7506859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr2:8529617-8529394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr2:9956284-9956508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:9962124-9962348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:10183283-10183506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:10262462-10262686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:10741207-10741418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:10882381-10882157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:11792248-11792026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr2:12595896-12595676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 168

               
               
               Conread position:3-224
               
               
               Cow position:chr2:12752333-12752557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:13067059-13067283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:15060036-15060247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:3-224
               
               
               Cow position:chr2:15241216-15241440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:15569141-15569364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr2:16324618-16324403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr2:16326979-16327202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr2:16717957-16718181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:17119132-17119356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:17807621-17807836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr2:18350452-18350676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:19014298-19014077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 158

               
               
               Conread position:3-224
               
               
               Cow position:chr2:19048924-19049147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:19540485-19540709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:21981810-21982034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:22080849-22080634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:3-224
               
               
               Cow position:chr2:22306332-22306553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr2:24688626-24688402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:25742325-25742549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:25885603-25885827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:25979005-25978782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 205

               
               
               Conread position:3-224
               
               
               Cow position:chr2:26129923-26130147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:26906193-26905969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:28646680-28646904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:28796792-28796568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:28847518-28847296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 195

               
               
               Conread position:3-224
               
               
               Cow position:chr2:29218909-29218687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:3-224
               
               
               Cow position:chr2:29956130-29956348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr2:29967389-29967613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:30815788-30816011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:3-224
               
               
               Cow position:chr2:31047811-31047587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:31409936-31410159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr2:32499695-32499912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):41, 134

               
               
               Conread position:3-224
               
               
               Cow position:chr2:32659388-32659170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr2:34502078-34501854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:35883523-35883747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:36721995-36721771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:36910198-36910422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:36983598-36983374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:37396326-37396102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:38487322-38487098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:38636366-38636590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:39119548-39119324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:39675811-39676024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:3-224
               
               
               Cow position:chr2:41157124-41156901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:3-224
               
               
               Cow position:chr2:42502473-42502250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:3-224
               
               
               Cow position:chr2:42667760-42667984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:43046824-43047048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:44094311-44094089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr2:46182590-46182813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr2:48360893-48360670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr2:48850296-48850520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:49461365-49461141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:49474847-49474623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:49827592-49827816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:50060050-50060274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:50080511-50080286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):36, 178

               
               
               Conread position:3-224
               
               
               Cow position:chr2:50431702-50431922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr2:50565260-50565035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:53003260-53003482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 125

               
               
               Conread position:3-224
               
               
               Cow position:chr2:53182771-53182994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:53204181-53204405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:53332750-53332525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:53542885-53542661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:53557110-53556887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:54699473-54699248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:3-224
               
               
               Cow position:chr2:54716379-54716159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr2:56054688-56054471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr2:56306884-56307108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:57338901-57338677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:58466620-58466396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:58564810-58565036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):11, 111

               
               
               Conread position:3-224
               
               
               Cow position:chr2:59410810-59411031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr2:62683612-62683387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:62731470-62731248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 181

               
               
               Conread position:3-224
               
               
               Cow position:chr2:62735115-62734891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:62819536-62819757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr2:63070343-63070567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:63707204-63707428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:63890294-63890514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):41, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr2:64531236-64531012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:64765971-64766197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:67187899-67188123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:67417824-67418045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:3-224
               
               
               Cow position:chr2:67682730-67682506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:68422498-68422275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr2:68489382-68489606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr2:70498689-70498909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr2:70524702-70524478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:70669653-70669432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr2:72016761-72016537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:73992671-73992447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:3-224
               
               
               Cow position:chr2:74237719-74237941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr2:74469047-74469271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:74761832-74761602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr2:77859266-77859046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr2:78765595-78765372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr2:81147033-81147261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-225
               
               
               Cow position:chr2:41009479-41009705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr2:576502-576277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 7

               
               
               Conread position:3-226
               
               
               Cow position:chr2:1186910-1187138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr2:30380221-30379995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr2:45936786-45937008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:3-226
               
               
               Cow position:chr2:49481410-49481631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-226
               
               
               Cow position:chr2:80840225-80840449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-227
               
               
               Cow position:chr2:10972016-10971790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:4-130
               
               
               Cow position:chr2:15963603-15963731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:4-146
               
               
               Cow position:chr2:1199905-1200049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:4-188
               
               
               Cow position:chr2:31511975-31511788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-209
               
               
               Cow position:chr2:34592603-34592804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 37

               
               
               Conread position:4-219
               
               
               Cow position:chr2:28638082-28638290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:4-221
               
               
               Cow position:chr2:62502077-62502297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:4-224
               
               
               Cow position:chr2:362581-362803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 52

               
               
               Conread position:4-224
               
               
               Cow position:chr2:778507-778728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:4-224
               
               
               Cow position:chr2:2018504-2018287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 167

               
               
               Conread position:4-224
               
               
               Cow position:chr2:2603606-2603388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:4-224
               
               
               Cow position:chr2:17265488-17265711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr2:49630267-49630048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:4-224
               
               
               Cow position:chr2:51480113-51479891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 150

               
               
               Conread position:4-224
               
               
               Cow position:chr2:52621720-52621497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr2:53663457-53663237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:4-224
               
               
               Cow position:chr2:76560534-76560311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr2:79967039-79967254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 98

               
               
               Conread position:5-166
               
               
               Cow position:chr2:6038222-6038380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 93

               
               
               Conread position:5-208
               
               
               Cow position:chr2:47618524-47618318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr2:12184711-12184491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 121

               
               
               Conread position:5-224
               
               
               Cow position:chr2:18020969-18021185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):30, 47

               
               
               Conread position:5-224
               
               
               Cow position:chr2:44476545-44476766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 203

               
               
               Conread position:5-224
               
               
               Cow position:chr2:57587139-57587361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr2:63067938-63068159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:7-224
               
               
               Cow position:chr2:82895172-82895392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):32, 105

               
               
               Conread position:19-224
               
               
               Cow position:chr2:38376102-38375892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):19, 93

               
               
               Conread position:20-224
               
               
               Cow position:chr2:86309486-86309691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):18, 91

               
               
               Conread position:21-216
               
               
               Cow position:chr2:43525926-43526119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):82, 67

               
               
               Conread position:21-218
               
               
               Cow position:chr2:56265878-56265682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:22-183
               
               
               Cow position:chr2:83525372-83525209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 143

               
               
               Conread position:22-183
               
               
               Cow position:chr2:83566045-83566208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 143

               
               
               Conread position:22-224
               
               
               Cow position:chr2:16331121-16330917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:22-226
               
               
               Cow position:chr2:78301468-78301675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:23-187
               
               
               Cow position:chr2:69648172-69648335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:23-205
               
               
               Cow position:chr2:943951-943769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:23-221
               
               
               Cow position:chr2:12199824-12200026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 88

               
               
               Conread position:24-174
               
               
               Cow position:chr2:27330579-27330426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr2:3623446-3623243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr2:4725889-4725687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 64

               
               
               Conread position:24-224
               
               
               Cow position:chr2:41764184-41763981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr2:33263435-33263631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):11, 84

               
               
               Conread position:28-227
               
               
               Cow position:chr2:72931179-72931366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:37-222
               
               
               Cow position:chr2:28655505-28655321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:153
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):59, 123

               
               
               Conread position:37-224
               
               
               Cow position:chr2:40772824-40772636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 76

               
               
               Conread position:40-224
               
               
               Cow position:chr2:39424835-39424650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:150
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr2:46303048-46303231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:152
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:41-217
               
               
               Cow position:chr2:40312432-40312254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):55, 122

               
               
               Conread position:41-220
               
               
               Cow position:chr2:38659620-38659800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:42-224
               
               
               Cow position:chr2:53030997-53030813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):54, 68

               
               
               Conread position:43-224
               
               
               Cow position:chr2:6965824-6965648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:43-224
               
               
               Cow position:chr2:63000829-63000647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:44-224
               
               
               Cow position:chr2:52780173-52779996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:47-224
               
               
               Cow position:chr2:72757447-72757269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 63

               
               
               Conread position:49-224
               
               
               Cow position:chr2:50980257-50980433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:144
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:52-226
               
               
               Cow position:chr2:44987526-44987701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1-136
               
               
               Cow position:chr20:29318685-29318554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:1-224
               
               
               Cow position:chr20:20364276-20364501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):5, 88

               
               
               Conread position:2-224
               
               
               Cow position:chr20:10494658-10494439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:3-115
               
               
               Cow position:chr20:14720891-14721008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-116
               
               
               Cow position:chr20:31000663-31000547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-122
               
               
               Cow position:chr20:10099588-10099466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-129
               
               
               Cow position:chr20:35128428-35128299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr20:32451890-32452036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-147
               
               
               Cow position:chr20:30546812-30546665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-152
               
               
               Cow position:chr20:35036915-35037067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-153
               
               
               Cow position:chr20:18549776-18549624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 144

               
               
               Conread position:3-154
               
               
               Cow position:chr20:22006681-22006535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr20:9700786-9700633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 113

               
               
               Conread position:3-158
               
               
               Cow position:chr20:11454138-11454296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr20:16526762-16526601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-166
               
               
               Cow position:chr20:19146093-19145931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:3-168
               
               
               Cow position:chr20:21338640-21338805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:3-177
               
               
               Cow position:chr20:29285143-29285320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr20:35145264-35145085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:3-189
               
               
               Cow position:chr20:12694768-12694581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:3-194
               
               
               Cow position:chr20:7081351-7081545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr20:34231405-34231604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-203
               
               
               Cow position:chr20:37104035-37104238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 161

               
               
               Conread position:3-209
               
               
               Cow position:chr20:25856633-25856431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:3-210
               
               
               Cow position:chr20:14327151-14327359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-215
               
               
               Cow position:chr20:34597895-34598109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-216
               
               
               Cow position:chr20:12333140-12332932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):97, 31

               
               
               Conread position:3-219
               
               
               Cow position:chr20:27876949-27876732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr20:28294784-28294566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:3-220
               
               
               Cow position:chr20:35159126-35159340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-221
               
               
               Cow position:chr20:11516571-11516797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:3-221
               
               
               Cow position:chr20:17657767-17657988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr20:26076021-26075801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:3-221
               
               
               Cow position:chr20:28956486-28956707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:3-221
               
               
               Cow position:chr20:35020376-35020166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):95, 108

               
               
               Conread position:3-221
               
               
               Cow position:chr20:37154501-37154723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-222
               
               
               Cow position:chr20:36311038-36311261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 203

               
               
               Conread position:3-224
               
               
               Cow position:chr20:753906-753682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:775123-774899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:826245-826021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:4205114-4204895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr20:5085872-5086096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:5269569-5269790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:3-224
               
               
               Cow position:chr20:5503282-5503506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:5958680-5958904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr20:6135526-6135750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:6550533-6550757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:7995078-7995302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:8445877-8445654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 201

               
               
               Conread position:3-224
               
               
               Cow position:chr20:9223317-9223093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:10405159-10404937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 158

               
               
               Conread position:3-224
               
               
               Cow position:chr20:10921461-10921682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:3-224
               
               
               Cow position:chr20:11331209-11331433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:12177025-12177249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:12434935-12435158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr20:12567855-12568075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr20:12827011-12827228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:3-224
               
               
               Cow position:chr20:13050093-13050315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 156

               
               
               Conread position:3-224
               
               
               Cow position:chr20:13303833-13304057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:13766356-13766133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:3-224
               
               
               Cow position:chr20:13955089-13954865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:3-224
               
               
               Cow position:chr20:14877523-14877301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:14925177-14925401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:15089907-15090131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:15527210-15526986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:15780732-15780959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:3-224
               
               
               Cow position:chr20:16106913-16106689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:16515788-16515564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:16559067-16559291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:19845240-19845017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr20:20439504-20439728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:20935672-20935889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):30, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr20:21720021-21719798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr20:22048831-22048607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:22060712-22060936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:23466184-23466409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:23802615-23802391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:24399400-24399624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:24567807-24568028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:3-224
               
               
               Cow position:chr20:24904079-24904303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr20:26052888-26053112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:26738242-26738018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:26999960-26999737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 175

               
               
               Conread position:3-224
               
               
               Cow position:chr20:28165307-28165089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr20:28560429-28560644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr20:29370956-29371180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:30146896-30146676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr20:30479574-30479349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:30579328-30579104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:30689338-30689117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:3-224
               
               
               Cow position:chr20:31846363-31846586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 217

               
               
               Conread position:3-224
               
               
               Cow position:chr20:32352060-32351841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr20:33246846-33247064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr20:33731218-33730997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 179

               
               
               Conread position:3-224
               
               
               Cow position:chr20:34643474-34643258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr20:34968448-34968223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr20:35094002-35093779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:3-224
               
               
               Cow position:chr20:35112494-35112272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:3-224
               
               
               Cow position:chr20:37271735-37271512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 161

               
               
               Conread position:3-224
               
               
               Cow position:chr20:41110957-41111180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr20:42254580-42254792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-225
               
               
               Cow position:chr20:27994060-27994285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:3-226
               
               
               Cow position:chr20:6239676-6239896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-226
               
               
               Cow position:chr20:40256127-40255902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:3-227
               
               
               Cow position:chr20:10686194-10685969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:4-186
               
               
               Cow position:chr20:9339477-9339293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):32, 64

               
               
               Conread position:4-214
               
               
               Cow position:chr20:5795238-5795025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:4-219
               
               
               Cow position:chr20:6055267-6055478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:4-220
               
               
               Cow position:chr20:30384781-30385000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr20:22209085-22208862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:5-220
               
               
               Cow position:chr20:8099239-8099032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:5-221
               
               
               Cow position:chr20:17668208-17667985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 112

               
               
               Conread position:5-224
               
               
               Cow position:chr20:7568510-7568723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 63

               
               
               Conread position:5-224
               
               
               Cow position:chr20:7592996-7593210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):10, 64

               
               
               Conread position:5-224
               
               
               Cow position:chr20:7597394-7597616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr20:28443886-28444106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 157

               
               
               Conread position:5-227
               
               
               Cow position:chr20:15295481-15295258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:6-219
               
               
               Cow position:chr20:20214376-20214160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:7-224
               
               
               Cow position:chr20:18092440-18092660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:21-221
               
               
               Cow position:chr20:15068260-15068058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):81, 142

               
               
               Conread position:21-224
               
               
               Cow position:chr20:19352622-19352829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:21-224
               
               
               Cow position:chr20:28887821-28887613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:22-126
               
               
               Cow position:chr20:13677300-13677407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:22-224
               
               
               Cow position:chr20:9996982-9996775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:23-213
               
               
               Cow position:chr20:14756821-14757014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 116

               
               
               Conread position:23-224
               
               
               Cow position:chr20:6053915-6054114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:24-224
               
               
               Cow position:chr20:8970449-8970652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr20:15117238-15117052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):68, 109

               
               
               Conread position:34-215
               
               
               Cow position:chr20:12155929-12156109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):62, 76

               
               
               Conread position:35-224
               
               
               Cow position:chr20:32085021-32085213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):73, 138

               
               
               Conread position:37-221
               
               
               Cow position:chr20:6476936-6476762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 126

               
               
               Conread position:37-224
               
               
               Cow position:chr20:3468810-3468622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:37-224
               
               
               Cow position:chr20:35843999-35844192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 75

               
               
               Conread position:38-224
               
               
               Cow position:chr20:10790882-10790697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:39-220
               
               
               Cow position:chr20:10035319-10035494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):87, 45

               
               
               Conread position:43-224
               
               
               Cow position:chr20:7810419-7810599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:149
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):57, 146

               
               
               Conread position:43-224
               
               
               Cow position:chr20:38000911-38000731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):53, 117

               
               
               Conread position:44-125
               
               
               Cow position:chr20:26799572-26799654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:83
               
               
               Alignm identity:75
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:225-469
               
               
               Cow position:chr20:19368098-19368328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):178, 129

               
               
               Conread position:1-224
               
               
               Cow position:chr21:17478650-17478427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):11, 176

               
               
               Conread position:1-224
               
               
               Cow position:chr21:17721157-17720934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 18

               
               
               Conread position:1-224
               
               
               Cow position:chr21:34657569-34657345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 117

               
               
               Conread position:1-224
               
               
               Cow position:chr21:36163707-36163938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1-224
               
               
               Cow position:chr21:47360596-47360818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:2-224
               
               
               Cow position:chr21:17413034-17413255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):37, 172

               
               
               Conread position:3-97
               
               
               Cow position:chr21:29213437-29213342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-107
               
               
               Cow position:chr21:3496931-3497038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-108
               
               
               Cow position:chr21:42842714-42842821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-118
               
               
               Cow position:chr21:18574098-18573980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-120
               
               
               Cow position:chr21:30850437-30850317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-125
               
               
               Cow position:chr21:4035705-4035829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-125
               
               
               Cow position:chr21:17207753-17207628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr21:33901129-33901256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr21:44762109-44762232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:3-129
               
               
               Cow position:chr21:16575872-16576001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr21:33245691-33245833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr21:23585667-23585522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr21:42558349-42558191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr21:26628343-26628182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-162
               
               
               Cow position:chr21:28811012-28811170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-166
               
               
               Cow position:chr21:13090215-13090372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:3-176
               
               
               Cow position:chr21:4791690-4791514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:3-176
               
               
               Cow position:chr21:24297499-24297664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:3-186
               
               
               Cow position:chr21:1058037-1057851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:152
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-190
               
               
               Cow position:chr21:31949991-31949801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-192
               
               
               Cow position:chr21:12802539-12802725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:3-197
               
               
               Cow position:chr21:15585150-15585329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:3-200
               
               
               Cow position:chr21:18786938-18787134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):97, 31

               
               
               Conread position:3-200
               
               
               Cow position:chr21:44862022-44862216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:3-201
               
               
               Cow position:chr21:9208884-9208687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:3-205
               
               
               Cow position:chr21:9010532-9010738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-206
               
               
               Cow position:chr21:2503318-2503113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 136

               
               
               Conread position:3-209
               
               
               Cow position:chr21:37298715-37298506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-210
               
               
               Cow position:chr21:1765954-1766148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:3-210
               
               
               Cow position:chr21:23329768-23329978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr21:47168535-47168320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr21:48234745-48234958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 33

               
               
               Conread position:3-216
               
               
               Cow position:chr21:2537584-2537798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:3-216
               
               
               Cow position:chr21:4567527-4567311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-216
               
               
               Cow position:chr21:23501101-23501316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:3-217
               
               
               Cow position:chr21:4079596-4079382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-218
               
               
               Cow position:chr21:3766195-3766413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-218
               
               
               Cow position:chr21:33728682-33728465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:3-220
               
               
               Cow position:chr21:25598248-25598028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr21:31252562-31252345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:3-221
               
               
               Cow position:chr21:5009895-5010115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 200

               
               
               Conread position:3-221
               
               
               Cow position:chr21:9895932-9895716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 114

               
               
               Conread position:3-221
               
               
               Cow position:chr21:13704436-13704656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):29, 185

               
               
               Conread position:3-221
               
               
               Cow position:chr21:16890265-16890488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-221
               
               
               Cow position:chr21:22855473-22855267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:3-221
               
               
               Cow position:chr21:30627508-30627725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 36

               
               
               Conread position:3-221
               
               
               Cow position:chr21:31275917-31275698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-221
               
               
               Cow position:chr21:32773510-32773289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr21:33832401-33832625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 158

               
               
               Conread position:3-221
               
               
               Cow position:chr21:46830990-46831212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-221
               
               
               Cow position:chr21:46974158-46974376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:3-221
               
               
               Cow position:chr21:47648917-47648694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr21:49655608-49655829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-222
               
               
               Cow position:chr21:36977363-36977575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr21:149722-149498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:1196113-1195889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:2293607-2293831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:2514426-2514202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:2905218-2905438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:3-224
               
               
               Cow position:chr21:4098148-4097926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:3-224
               
               
               Cow position:chr21:4559499-4559718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr21:4586103-4586327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 206

               
               
               Conread position:3-224
               
               
               Cow position:chr21:4719245-4719469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:4812769-4812986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr21:4898389-4898613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:5020721-5020497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:6765448-6765674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr21:6965897-6966121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:7047607-7047828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr21:9863371-9863580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr21:10570862-10570638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:10853840-10853616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:11144275-11144499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:11405305-11405529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:13300394-13300180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:3-224
               
               
               Cow position:chr21:14534188-14533964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:17144263-17144039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:18285381-18285157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:19351286-19351510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:19627133-19627357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:20244025-20244249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:22719526-22719746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:3-224
               
               
               Cow position:chr21:23341226-23341002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:24887219-24887001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr21:25986989-25986768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:3-224
               
               
               Cow position:chr21:26633655-26633878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr21:26699093-26699315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr21:26875166-26874943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr21:27066024-27066248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:27125143-27125367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:27287551-27287330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr21:27342827-27343047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr21:27428546-27428765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:3-224
               
               
               Cow position:chr21:27608127-27608349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 195

               
               
               Conread position:3-224
               
               
               Cow position:chr21:28259236-28259021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):32, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr21:28908564-28908789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 194

               
               
               Conread position:3-224
               
               
               Cow position:chr21:28915401-28915624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr21:29423636-29423414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr21:29500113-29499889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:30298054-30297829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:30565320-30565105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):36, 145

               
               
               Conread position:3-224
               
               
               Cow position:chr21:30595515-30595739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:31512696-31512919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:3-224
               
               
               Cow position:chr21:32237914-32237690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:32396451-32396673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 157

               
               
               Conread position:3-224
               
               
               Cow position:chr21:33307541-33307317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr21:33420401-33420617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr21:34823751-34823527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:34900099-34900323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:36376556-36376341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-224
               
               
               Cow position:chr21:36506264-36506487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr21:36534633-36534857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:38866037-38866261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:39059754-39059968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):29, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr21:39428977-39428753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:40267848-40268059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr21:41796150-41796370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr21:42917368-42917144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:43403863-43404086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:3-224
               
               
               Cow position:chr21:45782157-45782374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:3-224
               
               
               Cow position:chr21:47977842-47977618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:48273622-48273846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr21:48291780-48292000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:3-225
               
               
               Cow position:chr21:3253209-3252973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr21:27147977-27148203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr21:33257131-33256904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-228
               
               
               Cow position:chr21:20263101-20263327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:4-173
               
               
               Cow position:chr21:16768549-16768711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:4-187
               
               
               Cow position:chr21:36892658-36892844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr21:2878266-2878486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:4-224
               
               
               Cow position:chr21:3782346-3782124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:4-224
               
               
               Cow position:chr21:4739208-4738990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:4-224
               
               
               Cow position:chr21:6623385-6623165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 180

               
               
               Conread position:4-224
               
               
               Cow position:chr21:16277976-16277753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr21:32573555-32573331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:4-224
               
               
               Cow position:chr21:33709926-33710148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 200

               
               
               Conread position:4-224
               
               
               Cow position:chr21:47428916-47428694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:5-216
               
               
               Cow position:chr21:14727257-14727046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):32, 106

               
               
               Conread position:5-220
               
               
               Cow position:chr21:26400196-26400409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:5-221
               
               
               Cow position:chr21:43275-43070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):24, 133

               
               
               Conread position:5-224
               
               
               Cow position:chr21:8071527-8071746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 156

               
               
               Conread position:5-224
               
               
               Cow position:chr21:19969806-19969585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):27, 124

               
               
               Conread position:6-224
               
               
               Cow position:chr21:33316794-33317015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:7-215
               
               
               Cow position:chr21:25190222-25190011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-224
               
               
               Cow position:chr21:2664595-2664814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:11-224
               
               
               Cow position:chr21:18931742-18931530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):24, 165

               
               
               Conread position:18-224
               
               
               Cow position:chr21:3046895-3046690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):20, 171

               
               
               Conread position:18-227
               
               
               Cow position:chr21:8617648-8617850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 105

               
               
               Conread position:19-224
               
               
               Cow position:chr21:4189096-4188887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 121

               
               
               Conread position:21-224
               
               
               Cow position:chr21:12153381-12153174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):18, 129

               
               
               Conread position:22-224
               
               
               Cow position:chr21:21966730-21966533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:23-224
               
               
               Cow position:chr21:18791887-18792088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:23-224
               
               
               Cow position:chr21:19965155-19964960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:25-222
               
               
               Cow position:chr21:28056854-28056657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:26-224
               
               
               Cow position:chr21:11509493-11509292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:26-224
               
               
               Cow position:chr21:34684597-34684400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):10, 63

               
               
               Conread position:29-224
               
               
               Cow position:chr21:48530711-48530519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):67, 81

               
               
               Conread position:36-224
               
               
               Cow position:chr21:28476841-28476653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 6

               
               
               Conread position:37-216
               
               
               Cow position:chr21:24826605-24826775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:41-224
               
               
               Cow position:chr21:17480836-17480660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:42-217
               
               
               Cow position:chr21:17435466-17435641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):55, 144

               
               
               Conread position:44-224
               
               
               Cow position:chr21:17415305-17415482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):65, 130

               
               
               Conread position:54-224
               
               
               Cow position:chr21:8419573-8419408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 56

               
               
               Conread position:225-371
               
               
               Cow position:chr21:31951950-31951803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:225-426
               
               
               Cow position:chr21:23682819-23682616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:1-216
               
               
               Cow position:chr22:10602256-10602042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):5, 86

               
               
               Conread position:1-221
               
               
               Cow position:chr22:10161137-10160905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 116

               
               
               Conread position:1-224
               
               
               Cow position:chr22:17781545-17781773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:1-224
               
               
               Cow position:chr22:40386039-40385817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):5, 34

               
               
               Conread position:2-224
               
               
               Cow position:chr22:25340555-25340331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:3-104
               
               
               Cow position:chr22:11599664-11599562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-126
               
               
               Cow position:chr22:25765312-25765438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr22:27386154-27386281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr22:33379141-33379280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr22:102324-102178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr22:1591439-1591291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr22:22663676-22663822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-153
               
               
               Cow position:chr22:41494723-41494876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr22:33448901-33449056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:3-158
               
               
               Cow position:chr22:45106725-45106882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-161
               
               
               Cow position:chr22:5929501-5929653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 98

               
               
               Conread position:3-162
               
               
               Cow position:chr22:22285397-22285238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:3-169
               
               
               Cow position:chr22:23582412-23582581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-169
               
               
               Cow position:chr22:36564856-36565013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:3-170
               
               
               Cow position:chr22:29553781-29553951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr22:43280081-43280256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr22:35755290-35755466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-178
               
               
               Cow position:chr22:15497396-15497219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 57

               
               
               Conread position:3-179
               
               
               Cow position:chr22:8417654-8417474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr22:18030625-18030453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr22:9285340-9285526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr22:22048798-22048984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr22:19597561-19597748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-193
               
               
               Cow position:chr22:13552758-13552565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr22:14807656-14807462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-195
               
               
               Cow position:chr22:47957865-47958058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:3-202
               
               
               Cow position:chr22:13017598-13017800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-203
               
               
               Cow position:chr22:15356404-15356210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:3-207
               
               
               Cow position:chr22:8734132-8734341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-209
               
               
               Cow position:chr22:5835948-5835742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:3-210
               
               
               Cow position:chr22:3270433-3270635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-215
               
               
               Cow position:chr22:981724-981509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr22:6924433-6924229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-220
               
               
               Cow position:chr22:10577086-10577306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr22:3065401-3065618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:3-221
               
               
               Cow position:chr22:6340054-6339835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:3-221
               
               
               Cow position:chr22:12625158-12625376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:3-221
               
               
               Cow position:chr22:15055968-15055752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:3-221
               
               
               Cow position:chr22:15057671-15057461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:3-221
               
               
               Cow position:chr22:15920434-15920649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-221
               
               
               Cow position:chr22:21592825-21592604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr22:24817361-24817582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr22:26759362-26759146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:3-221
               
               
               Cow position:chr22:29855251-29855030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr22:31598711-31598487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:3-221
               
               
               Cow position:chr22:39443615-39443824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:3-221
               
               
               Cow position:chr22:44099666-44099888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr22:46578303-46578523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:51912-51690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:3-224
               
               
               Cow position:chr22:533502-533279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:697334-697110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:1036281-1036057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:2561061-2561292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:3012119-3011910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr22:3274955-3275179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:3488934-3489158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:5015491-5015265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:5312345-5312569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:5315643-5315418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:6722168-6722395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr22:8339820-8339595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:8776316-8776540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:8881542-8881324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:3-224
               
               
               Cow position:chr22:9269601-9269376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):36, 164

               
               
               Conread position:3-224
               
               
               Cow position:chr22:9371759-9371536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:9728581-9728795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:10314027-10313805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):92, 107

               
               
               Conread position:3-224
               
               
               Cow position:chr22:10330543-10330338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-224
               
               
               Cow position:chr22:10361325-10361103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr22:11036877-11036665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 154

               
               
               Conread position:3-224
               
               
               Cow position:chr22:11754251-11754464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:3-224
               
               
               Cow position:chr22:11838024-11838241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr22:11988303-11988528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:12225502-12225718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:3-224
               
               
               Cow position:chr22:12728260-12728483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr22:13185206-13184986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-224
               
               
               Cow position:chr22:13696520-13696743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 196

               
               
               Conread position:3-224
               
               
               Cow position:chr22:13897038-13896819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:3-224
               
               
               Cow position:chr22:15174670-15174894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:15308560-15308785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:15858179-15857955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:17325100-17325324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:18233274-18233052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 7

               
               
               Conread position:3-224
               
               
               Cow position:chr22:18603409-18603633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:18807832-18808054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:3-224
               
               
               Cow position:chr22:18811513-18811735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:3-224
               
               
               Cow position:chr22:19140304-19140527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:3-224
               
               
               Cow position:chr22:19600399-19600624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:3-224
               
               
               Cow position:chr22:20237172-20237396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:20569640-20569863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-224
               
               
               Cow position:chr22:22607560-22607336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:23864211-23863992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr22:25336553-25336329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:25968266-25968482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:3-224
               
               
               Cow position:chr22:26089834-26090058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:26104737-26104961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:27306562-27306786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:28130155-28129931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):34, 136

               
               
               Conread position:3-224
               
               
               Cow position:chr22:28178349-28178127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr22:29397486-29397262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:29464293-29464069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:29955789-29956013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr22:30092193-30091981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):53, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr22:30675326-30675549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr22:30963301-30963079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:3-224
               
               
               Cow position:chr22:31315945-31315721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:31331470-31331694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:32210014-32209789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:32660677-32660460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-224
               
               
               Cow position:chr22:32894310-32894086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr22:32943850-32943626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:33093740-33093525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 187

               
               
               Conread position:3-224
               
               
               Cow position:chr22:33901901-33902125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:33951557-33951774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:3-224
               
               
               Cow position:chr22:34171852-34171628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:34607891-34607667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:3-224
               
               
               Cow position:chr22:34758659-34758884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:34931678-34931901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:35910086-35910310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:35934565-35934790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:36503303-36503523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:3-224
               
               
               Cow position:chr22:36785101-36784892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr22:36858144-36858358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:3-224
               
               
               Cow position:chr22:37290452-37290664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr22:38439968-38440190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr22:38553635-38553414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:3-224
               
               
               Cow position:chr22:39473210-39473440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:39902783-39902559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:41271803-41272024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr22:41846167-41846387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr22:42994575-42994351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr22:43261266-43261043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 165

               
               
               Conread position:3-224
               
               
               Cow position:chr22:43789129-43788906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr22:45281349-45281127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr22:2415300-2415073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr22:12869055-12869280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr22:12969004-12969229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 161

               
               
               Conread position:3-227
               
               
               Cow position:chr22:33200681-33200456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-227
               
               
               Cow position:chr22:40589805-40589566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 148

               
               
               Conread position:3-227
               
               
               Cow position:chr22:44462700-44462473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-252
               
               
               Cow position:chr22:8773603-8773856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 229

               
               
               Conread position:4-113
               
               
               Cow position:chr22:15173742-15173630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-119
               
               
               Cow position:chr22:799264-799145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:4-199
               
               
               Cow position:chr22:1080288-1080095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:4-221
               
               
               Cow position:chr22:3807077-3806866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 147

               
               
               Conread position:4-224
               
               
               Cow position:chr22:19048376-19048593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):115, 89

               
               
               Conread position:4-224
               
               
               Cow position:chr22:21364185-21364408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:4-224
               
               
               Cow position:chr22:35903819-35904034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:4-224
               
               
               Cow position:chr22:36357457-36357235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:4-228
               
               
               Cow position:chr22:32951630-32951414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:5-183
               
               
               Cow position:chr22:34901263-34901086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:5-193
               
               
               Cow position:chr22:18191931-18191738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:5-194
               
               
               Cow position:chr22:31645506-31645320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:5-220
               
               
               Cow position:chr22:45543542-45543760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-221
               
               
               Cow position:chr22:36555749-36555967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:5-224
               
               
               Cow position:chr22:13209779-13209560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:5-224
               
               
               Cow position:chr22:39465141-39465363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr22:41387809-41387577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:5-224
               
               
               Cow position:chr22:45845302-45845077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:5-226
               
               
               Cow position:chr22:3433563-3433787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:6-224
               
               
               Cow position:chr22:6202073-6202288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:6-224
               
               
               Cow position:chr22:32019163-32019381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:8-226
               
               
               Cow position:chr22:7156049-7155834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):31, 87

               
               
               Conread position:13-221
               
               
               Cow position:chr22:15049346-15049151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:13-224
               
               
               Cow position:chr22:46568698-46568911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):26, 5

               
               
               Conread position:21-152
               
               
               Cow position:chr22:31871110-31871242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:22-224
               
               
               Cow position:chr22:44924948-44925148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:23-224
               
               
               Cow position:chr22:288258-288454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 87

               
               
               Conread position:25-224
               
               
               Cow position:chr22:43236217-43236015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:26-224
               
               
               Cow position:chr22:557326-557524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):70, 160

               
               
               Conread position:27-224
               
               
               Cow position:chr22:4567474-4567289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:32-224
               
               
               Cow position:chr22:28785490-28785297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:158
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):7, 80

               
               
               Conread position:35-227
               
               
               Cow position:chr22:18195064-18194873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 154

               
               
               Conread position:38-146
               
               
               Cow position:chr22:3977632-3977523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:38-224
               
               
               Cow position:chr22:3714138-3714325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:44-224
               
               
               Cow position:chr22:8480576-8480396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 129

               
               
               Conread position:44-224
               
               
               Cow position:chr22:8504821-8504641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):52, 129

               
               
               Conread position:44-224
               
               
               Cow position:chr22:42500007-42500188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:148
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:45-221
               
               
               Cow position:chr22:40326650-40326476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):140, 48

               
               
               Conread position:45-224
               
               
               Cow position:chr22:37270449-37270274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:49-224
               
               
               Cow position:chr22:11698254-11698430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:224-455
               
               
               Cow position:chr22:8741738-8741965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):177, 57

               
               
               Conread position:293-535
               
               
               Cow position:chr22:1317301-1317066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:3-107
               
               
               Cow position:chr23:4581421-4581314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-136
               
               
               Cow position:chr23:11405290-11405424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-157
               
               
               Cow position:chr23:12978149-12977996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:3-157
               
               
               Cow position:chr23:19056957-19057114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr23:4266831-4266664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-169
               
               
               Cow position:chr23:20541363-20541202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 32

               
               
               Conread position:3-175
               
               
               Cow position:chr23:40553727-40553902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr23:2529001-2529179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr23:29446554-29446734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:3-196
               
               
               Cow position:chr23:17876483-17876679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-197
               
               
               Cow position:chr23:4437013-4436817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-210
               
               
               Cow position:chr23:24098523-24098313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-211
               
               
               Cow position:chr23:8290849-8290645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:3-213
               
               
               Cow position:chr23:29459858-29460067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-215
               
               
               Cow position:chr23:23193036-23193247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-216
               
               
               Cow position:chr23:771096-771312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr23:29447855-29448069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 195

               
               
               Conread position:3-218
               
               
               Cow position:chr23:5624184-5624395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:3-219
               
               
               Cow position:chr23:1535518-1535302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 163

               
               
               Conread position:3-219
               
               
               Cow position:chr23:11814456-11814666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:3-220
               
               
               Cow position:chr23:17846386-17846173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:3-221
               
               
               Cow position:chr23:1311175-1311399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr23:3167446-3167216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr23:11128413-11128193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr23:16999835-16999618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr23:416322-416099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:3-224
               
               
               Cow position:chr23:671567-671343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:1959522-1959298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:2023689-2023913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:2180453-2180675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr23:2320554-2320773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr23:2408817-2409040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr23:2761293-2761070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr23:2791378-2791591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr23:3549799-3550023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:3730190-3730414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:3877748-3877971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 153

               
               
               Conread position:3-224
               
               
               Cow position:chr23:4532302-4532526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:4636960-4637184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:4892091-4891867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:5396185-5396409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:5441312-5441089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:6173625-6173847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr23:8707786-8707562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:10679438-10679662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:10936901-10937131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:11070475-11070248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:11079780-11079555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:11343892-11343668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:11376922-11377146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:11712271-11712496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr23:11782181-11781956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:14265738-14265518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr23:14959562-14959780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-224
               
               
               Cow position:chr23:14970559-14970780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 77

               
               
               Conread position:3-224
               
               
               Cow position:chr23:15180353-15180130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:15215442-15215663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr23:15528982-15528758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:16495881-16496104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:19493244-19493020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:20025329-20025105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:20152825-20153050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:21351556-21351777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:3-224
               
               
               Cow position:chr23:21772514-21772739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:22143915-22144138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):33, 192

               
               
               Conread position:3-224
               
               
               Cow position:chr23:25553987-25553763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):40, 136

               
               
               Conread position:3-224
               
               
               Cow position:chr23:26828644-26828424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr23:27313240-27313016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:27402529-27402308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:3-224
               
               
               Cow position:chr23:28915723-28915504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr23:28987737-28987514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr23:29043179-29042954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:30623106-30623326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:3-224
               
               
               Cow position:chr23:30634199-30634423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:31605823-31605599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:31833608-31833828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr23:33817845-33817616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):36, 179

               
               
               Conread position:3-224
               
               
               Cow position:chr23:34469013-34469235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr23:36027857-36028081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:36308599-36308384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:3-224
               
               
               Cow position:chr23:37199115-37199342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr23:39745255-39745035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr23:41015324-41015100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:4-192
               
               
               Cow position:chr23:1322002-1322191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:4-195
               
               
               Cow position:chr23:12864093-12863905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):92, 166

               
               
               Conread position:4-224
               
               
               Cow position:chr23:954406-954625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):41, 158

               
               
               Conread position:4-224
               
               
               Cow position:chr23:24119949-24119726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr23:25357740-25357517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-226
               
               
               Cow position:chr23:4516927-4516710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:5-131
               
               
               Cow position:chr23:39389462-39389333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-216
               
               
               Cow position:chr23:7359849-7359640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:6-122
               
               
               Cow position:chr23:29471917-29472036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:6-224
               
               
               Cow position:chr23:5882695-5882478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:13-221
               
               
               Cow position:chr23:40890161-40889949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:19-224
               
               
               Cow position:chr23:19637518-19637720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 153

               
               
               Conread position:22-219
               
               
               Cow position:chr23:38584290-38584096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 89

               
               
               Conread position:25-221
               
               
               Cow position:chr23:21277262-21277460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:43-224
               
               
               Cow position:chr23:1048520-1048702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:43-224
               
               
               Cow position:chr23:2720807-2720628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1-224
               
               
               Cow position:chr24:27148593-27148369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 115

               
               
               Conread position:2-205
               
               
               Cow position:chr24:32361367-32361570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:166
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):34, 146

               
               
               Conread position:2-216
               
               
               Cow position:chr24:24249018-24249230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:3-107
               
               
               Cow position:chr24:19466762-19466868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:3-107
               
               
               Cow position:chr24:27345408-27345515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-117
               
               
               Cow position:chr24:17752758-17752874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 111

               
               
               Conread position:3-127
               
               
               Cow position:chr24:15793529-15793656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-135
               
               
               Cow position:chr24:11940249-11940114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-138
               
               
               Cow position:chr24:10035556-10035693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-145
               
               
               Cow position:chr24:11081292-11081437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr24:12446982-12446837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr24:17544456-17544614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr24:18740881-18741048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr24:39067380-39067575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr24:42944179-42944371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:3-209
               
               
               Cow position:chr24:30893380-30893585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 176

               
               
               Conread position:3-216
               
               
               Cow position:chr24:28497647-28497861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:3-216
               
               
               Cow position:chr24:31758804-31759016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:3-216
               
               
               Cow position:chr24:36710326-36710114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):45, 119

               
               
               Conread position:3-217
               
               
               Cow position:chr24:9549750-9549535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-218
               
               
               Cow position:chr24:30870481-30870697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):41, 197

               
               
               Conread position:3-218
               
               
               Cow position:chr24:36028027-36028243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 195

               
               
               Conread position:3-219
               
               
               Cow position:chr24:33122414-33122196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-219
               
               
               Cow position:chr24:40149903-40150118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):97, 31

               
               
               Conread position:3-220
               
               
               Cow position:chr24:6442926-6442706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr24:6412966-6412745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr24:11462518-11462744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr24:12090468-12090247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr24:14250096-14250316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr24:15372263-15372047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-221
               
               
               Cow position:chr24:22975295-22975075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:3-221
               
               
               Cow position:chr24:23052399-23052621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr24:32608799-32608578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:2948047-2947824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 181

               
               
               Conread position:3-224
               
               
               Cow position:chr24:3162958-3162734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:3793970-3793746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:3851083-3850859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:5279700-5279476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:5862866-5863089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:3-224
               
               
               Cow position:chr24:5910306-5910071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 7

               
               
               Conread position:3-224
               
               
               Cow position:chr24:5929267-5929043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:5990699-5990919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr24:6020590-6020814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:6035693-6035917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:6067856-6068074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:3-224
               
               
               Cow position:chr24:6415650-6415427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:3-224
               
               
               Cow position:chr24:6524484-6524261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:7597071-7597295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:7749112-7748890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:7960028-7960252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:8607817-8607593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:9071359-9071577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr24:10244073-10244284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:3-224
               
               
               Cow position:chr24:11208119-11208343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:12119479-12119698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:3-224
               
               
               Cow position:chr24:12203029-12203247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:3-224
               
               
               Cow position:chr24:12332219-12332443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:12347906-12348129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:13496772-13496548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:14515967-14516190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr24:14745848-14745628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr24:14760381-14760156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:15296603-15296379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:15667261-15667482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:3-224
               
               
               Cow position:chr24:16056378-16056594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:3-224
               
               
               Cow position:chr24:16080999-16081223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:16558797-16559015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr24:16646447-16646646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:17105392-17105613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:3-224
               
               
               Cow position:chr24:17161490-17161714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:17566332-17566114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 158

               
               
               Conread position:3-224
               
               
               Cow position:chr24:18112943-18112719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:18267005-18267222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr24:20283724-20283946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 195

               
               
               Conread position:3-224
               
               
               Cow position:chr24:20604237-20604013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:22047581-22047805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:22795046-22794823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:22954050-22953826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:25372590-25372367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:25439693-25439465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr24:29181840-29181622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:3-224
               
               
               Cow position:chr24:29190771-29190552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr24:30681645-30681858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 165

               
               
               Conread position:3-224
               
               
               Cow position:chr24:31357078-31356865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr24:31381875-31381663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:3-224
               
               
               Cow position:chr24:33937416-33937193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:35067294-35067513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr24:35823717-35823941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:36556099-36556315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr24:38296544-38296320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:38588271-38588046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr24:40272335-40272111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:40428206-40428430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:40466925-40467149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:40519115-40519339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:41005958-41005742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-224
               
               
               Cow position:chr24:41062942-41062717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:3-225
               
               
               Cow position:chr24:32823634-32823859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-225
               
               
               Cow position:chr24:32853700-32853475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr24:11104664-11104890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr24:36404806-36404584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 111

               
               
               Conread position:3-240
               
               
               Cow position:chr24:33640010-33640248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:4-124
               
               
               Cow position:chr24:39482653-39482536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:4-126
               
               
               Cow position:chr24:6340190-6340067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:4-221
               
               
               Cow position:chr24:45009670-45009454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):104, 35

               
               
               Conread position:4-224
               
               
               Cow position:chr24:9088633-9088843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 23

               
               
               Conread position:4-224
               
               
               Cow position:chr24:17188787-17189010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr24:17309939-17310170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr24:17406561-17406361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:4-224
               
               
               Cow position:chr24:26412534-26412315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:4-224
               
               
               Cow position:chr24:28601543-28601760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:4-224
               
               
               Cow position:chr24:36721930-36721708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 6

               
               
               Conread position:4-224
               
               
               Cow position:chr24:45087009-45086787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:5-220
               
               
               Cow position:chr24:12147102-12147319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:5-224
               
               
               Cow position:chr24:36036348-36036562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:5-224
               
               
               Cow position:chr24:36779757-36779535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-227
               
               
               Cow position:chr24:28336575-28336796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:7-224
               
               
               Cow position:chr24:18222997-18223216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 168

               
               
               Conread position:22-224
               
               
               Cow position:chr24:6544045-6543849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 90

               
               
               Conread position:23-224
               
               
               Cow position:chr24:40036486-40036690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:24-194
               
               
               Cow position:chr24:45003882-45003714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:24-224
               
               
               Cow position:chr24:9900838-9900635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:40-169
               
               
               Cow position:chr24:14380982-14381112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:44-224
               
               
               Cow position:chr24:26388448-26388629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:147
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:50-224
               
               
               Cow position:chr24:33240412-33240577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:228-461
               
               
               Cow position:chr24:14391429-14391663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):99, 64

               
               
               Conread position:229-354
               
               
               Cow position:chr24:14874227-14874352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:237-540
               
               
               Cow position:chr24:37216074-37215772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):99, 73

               
               
               Conread position:1-224
               
               
               Cow position:chr25:29313134-29313358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:2-224
               
               
               Cow position:chr25:23325839-23326065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-118
               
               
               Cow position:chr25:9413532-9413414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-125
               
               
               Cow position:chr25:19913055-19912930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-126
               
               
               Cow position:chr25:17210949-17211075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-126
               
               
               Cow position:chr25:17808594-17808719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-126
               
               
               Cow position:chr25:27145610-27145484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr25:3688320-3688193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr25:15429495-15429622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr25:34013569-34013726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr25:16801625-16801449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr25:9395594-9395401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:3-208
               
               
               Cow position:chr25:34673401-34673609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-209
               
               
               Cow position:chr25:25039435-25039240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-210
               
               
               Cow position:chr25:24228153-24228360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:3-216
               
               
               Cow position:chr25:4522626-4522842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr25:23366852-23366636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):32, 179

               
               
               Conread position:3-216
               
               
               Cow position:chr25:26923023-26922810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 145

               
               
               Conread position:3-216
               
               
               Cow position:chr25:35446130-35445920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-217
               
               
               Cow position:chr25:8655476-8655258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:3-217
               
               
               Cow position:chr25:18190193-18190406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):93, 157

               
               
               Conread position:3-220
               
               
               Cow position:chr25:2594947-2594737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-220
               
               
               Cow position:chr25:37593587-37593367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:3-220
               
               
               Cow position:chr25:41356612-41356832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 161

               
               
               Conread position:3-221
               
               
               Cow position:chr25:11929375-11929584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):25, 73

               
               
               Conread position:3-221
               
               
               Cow position:chr25:20075662-20075444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:3-221
               
               
               Cow position:chr25:35567701-35567919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-221
               
               
               Cow position:chr25:40322105-40322326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:2516183-2515969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr25:7223247-7223471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:10012877-10013100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:3-224
               
               
               Cow position:chr25:10136998-10136785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-224
               
               
               Cow position:chr25:10633824-10634045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:3-224
               
               
               Cow position:chr25:11043804-11043582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr25:11124951-11124727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:11956016-11955792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:12082166-12082385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr25:12756235-12756463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):36, 142

               
               
               Conread position:3-224
               
               
               Cow position:chr25:12939022-12939246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:13787159-13786935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:13941549-13941777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:3-224
               
               
               Cow position:chr25:14756226-14756448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr25:16922606-16922828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:3-224
               
               
               Cow position:chr25:17554076-17554297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 13

               
               
               Conread position:3-224
               
               
               Cow position:chr25:17585837-17586059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr25:17904825-17904601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:17995105-17995331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:18072410-18072186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 171

               
               
               Conread position:3-224
               
               
               Cow position:chr25:18265372-18265158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:3-224
               
               
               Cow position:chr25:18330590-18330815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:18486644-18486427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:3-224
               
               
               Cow position:chr25:18886296-18886520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr25:19139387-19139611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:19367513-19367734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):107, 30

               
               
               Conread position:3-224
               
               
               Cow position:chr25:20633945-20633722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:3-224
               
               
               Cow position:chr25:22151290-22151066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:23361670-23361451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:3-224
               
               
               Cow position:chr25:23394050-23393833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):214, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr25:23913853-23913633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):93, 107

               
               
               Conread position:3-224
               
               
               Cow position:chr25:24636958-24637183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr25:24654989-24655208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr25:25510074-25509834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:25826635-25826409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:3-224
               
               
               Cow position:chr25:26282209-26281986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr25:26705697-26705921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:26914415-26914195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:3-224
               
               
               Cow position:chr25:27019053-27019276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr25:27231544-27231320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:28275483-28275705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr25:28863057-28862833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:29357827-29358051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:29525682-29525906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:29802560-29802784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:31073411-31073635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:32577477-32577701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:34164377-34164600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:3-224
               
               
               Cow position:chr25:34343723-34343945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:3-224
               
               
               Cow position:chr25:34503037-34503261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:35372428-35372652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:35589262-35589039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:35755059-35755282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr25:39386644-39386868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr25:41098013-41098230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:3-224
               
               
               Cow position:chr25:41121189-41120970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 167

               
               
               Conread position:3-225
               
               
               Cow position:chr25:40389549-40389773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:3-226
               
               
               Cow position:chr25:15367922-15367697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:3-226
               
               
               Cow position:chr25:18474383-18474166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:3-226
               
               
               Cow position:chr25:19337142-19337366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:3-227
               
               
               Cow position:chr25:23999004-23999225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):36, 125

               
               
               Conread position:4-146
               
               
               Cow position:chr25:612713-612571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:4-199
               
               
               Cow position:chr25:24204952-24205144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):92, 14

               
               
               Conread position:4-217
               
               
               Cow position:chr25:41364784-41364991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:4-221
               
               
               Cow position:chr25:26931280-26931060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr25:2497918-2497704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr25:26353601-26353823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr25:37648602-37648393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:5-224
               
               
               Cow position:chr25:4372511-4372729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr25:13429929-13430148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 169

               
               
               Conread position:5-224
               
               
               Cow position:chr25:18208503-18208724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:18-214
               
               
               Cow position:chr25:28420533-28420734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:22-194
               
               
               Cow position:chr25:449633-449807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:23-196
               
               
               Cow position:chr25:393431-393252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):16, 158

               
               
               Conread position:23-221
               
               
               Cow position:chr25:41353250-41353449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):20, 112

               
               
               Conread position:23-224
               
               
               Cow position:chr25:33838547-33838344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:23-224
               
               
               Cow position:chr25:35626072-35626270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:30-224
               
               
               Cow position:chr25:3172243-3172438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):9, 97

               
               
               Conread position:38-224
               
               
               Cow position:chr25:35571967-35571780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:152
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:43-224
               
               
               Cow position:chr25:34509036-34509218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:53-224
               
               
               Cow position:chr25:30340225-30340399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 165

               
               
               Conread position:3-121
               
               
               Cow position:chr26:16864715-16864594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-129
               
               
               Cow position:chr26:20299560-20299678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-143
               
               
               Cow position:chr26:11537266-11537122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr26:6870837-6870692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-156
               
               
               Cow position:chr26:6476236-6476392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-156
               
               
               Cow position:chr26:7677175-7677019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-162
               
               
               Cow position:chr26:30752898-30753060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-172
               
               
               Cow position:chr26:2670379-2670548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-178
               
               
               Cow position:chr26:3026999-3027176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:3-179
               
               
               Cow position:chr26:17169271-17169092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr26:30786368-30786184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-187
               
               
               Cow position:chr26:4440325-4440511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 143

               
               
               Conread position:3-199
               
               
               Cow position:chr26:11269662-11269464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-199
               
               
               Cow position:chr26:14173504-14173305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr26:29433673-29433469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-209
               
               
               Cow position:chr26:35393656-35393865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-215
               
               
               Cow position:chr26:20019542-20019327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr26:26611897-26611682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr26:13183751-13183535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-219
               
               
               Cow position:chr26:23809985-23810202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-220
               
               
               Cow position:chr26:34265405-34265185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr26:11370134-11369917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):36, 42

               
               
               Conread position:3-221
               
               
               Cow position:chr26:20186752-20186542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:3-221
               
               
               Cow position:chr26:20256064-20255849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):93, 164

               
               
               Conread position:3-221
               
               
               Cow position:chr26:21350942-21350726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 163

               
               
               Conread position:3-221
               
               
               Cow position:chr26:28706621-28706838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:3-221
               
               
               Cow position:chr26:30585916-30586125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:3-222
               
               
               Cow position:chr26:17288251-17288029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:387121-386897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:1342854-1343078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:1390423-1390199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:1621088-1620872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:3-224
               
               
               Cow position:chr26:1915781-1915559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 172

               
               
               Conread position:3-224
               
               
               Cow position:chr26:2201969-2201747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:3-224
               
               
               Cow position:chr26:3157556-3157332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:3187198-3186976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 111

               
               
               Conread position:3-224
               
               
               Cow position:chr26:3199812-3199588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:3230907-3230685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:3537563-3537339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:3556676-3556882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:3-224
               
               
               Cow position:chr26:3564598-3564822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:3833475-3833251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:4549051-4548826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr26:5679973-5679747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:6430024-6429802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:6843779-6844003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:8084267-8084043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:8738976-8739200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:8885284-8885061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr26:9115479-9115256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr26:9694355-9694579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:9835912-9835685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr26:10490680-10490461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:3-224
               
               
               Cow position:chr26:12585097-12585321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:13773492-13773270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 207

               
               
               Conread position:3-224
               
               
               Cow position:chr26:14487820-14488038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr26:15145935-15145711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:17393458-17393678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:3-224
               
               
               Cow position:chr26:17429034-17429258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:18803928-18804153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:19795494-19795270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:22831597-22831819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):36, 153

               
               
               Conread position:3-224
               
               
               Cow position:chr26:23591136-23590912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:23889851-23889629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:26286301-26286076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:30594188-30594412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:30625173-30625396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:3-224
               
               
               Cow position:chr26:31138510-31138729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:3-224
               
               
               Cow position:chr26:34015278-34015059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:3-224
               
               
               Cow position:chr26:35121801-35122025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr26:35191107-35191330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):37, 192

               
               
               Conread position:3-224
               
               
               Cow position:chr26:35423938-35423716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:3-224
               
               
               Cow position:chr26:35560620-35560844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr26:1346553-1346779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr26:3924041-3924263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:4-217
               
               
               Cow position:chr26:800118-799905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):35, 150

               
               
               Conread position:4-224
               
               
               Cow position:chr26:9558440-9558663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr26:18928715-18928499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:4-224
               
               
               Cow position:chr26:22691828-22691607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:5-184
               
               
               Cow position:chr26:30725478-30725661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr26:614757-614987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):111, 30

               
               
               Conread position:12-221
               
               
               Cow position:chr26:10011553-10011342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:23-224
               
               
               Cow position:chr26:3689918-3689709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):69, 175

               
               
               Conread position:23-224
               
               
               Cow position:chr26:3722865-3722667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 66

               
               
               Conread position:24-221
               
               
               Cow position:chr26:1012991-1012795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:35-225
               
               
               Cow position:chr26:4324307-4324498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:36-224
               
               
               Cow position:chr26:17182477-17182300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):92, 61

               
               
               Conread position:40-224
               
               
               Cow position:chr26:1088586-1088401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:43-221
               
               
               Cow position:chr26:8308366-8308544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:1-221
               
               
               Cow position:chr27:31249633-31249417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:1-224
               
               
               Cow position:chr27:4828897-4828672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:3-126
               
               
               Cow position:chr27:791650-791776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr27:16332083-16332243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-164
               
               
               Cow position:chr27:15100038-15099874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr27:3649877-3649710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr27:1501909-1501732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:3-186
               
               
               Cow position:chr27:12239463-12239278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:153
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:3-196
               
               
               Cow position:chr27:344534-344730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr27:25112557-25112354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 15

               
               
               Conread position:3-216
               
               
               Cow position:chr27:29467324-29467110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:3-218
               
               
               Cow position:chr27:30783299-30783082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):36, 167

               
               
               Conread position:3-220
               
               
               Cow position:chr27:18954439-18954219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr27:2001241-2001020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr27:3653304-3653525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr27:9262881-9263103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr27:22797263-22797482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 151

               
               
               Conread position:3-221
               
               
               Cow position:chr27:27557198-27556981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:3-224
               
               
               Cow position:chr27:165523-165747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:1536565-1536342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr27:2331899-2331675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:2681916-2681695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr27:3990404-3990628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 215

               
               
               Conread position:3-224
               
               
               Cow position:chr27:4982768-4982544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:8201331-8201110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr27:9333063-9332850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr27:9970567-9970343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:11481327-11481103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:12006544-12006320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:13309040-13308816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:13316955-13316735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr27:13353702-13353478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:13901520-13901296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:14297603-14297379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:14669586-14669369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 175

               
               
               Conread position:3-224
               
               
               Cow position:chr27:15033495-15033719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:15272680-15272896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:3-224
               
               
               Cow position:chr27:15406018-15405800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:3-224
               
               
               Cow position:chr27:15633947-15634170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:3-224
               
               
               Cow position:chr27:15871932-15872147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:3-224
               
               
               Cow position:chr27:16031001-16031225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:16787902-16788124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:3-224
               
               
               Cow position:chr27:19423981-19424205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:19523313-19523536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr27:20810812-20810593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 144

               
               
               Conread position:3-224
               
               
               Cow position:chr27:21392406-21392184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr27:21451839-21451616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr27:22647236-22647460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:24295864-24296097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:25784366-25784581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:3-224
               
               
               Cow position:chr27:25800815-25801033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr27:26330328-26330104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:27279110-27278883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr27:27291789-27291561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr27:29035986-29036208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:3-224
               
               
               Cow position:chr27:30306873-30307097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr27:3232138-3232364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr27:8972840-8972614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr27:14380699-14380474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr27:15870624-15870840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:3-227
               
               
               Cow position:chr27:8291237-8291012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:3-233
               
               
               Cow position:chr27:25971204-25971438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:4-206
               
               
               Cow position:chr27:26644868-26645064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:4-224
               
               
               Cow position:chr27:5983635-5983858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-226
               
               
               Cow position:chr27:2557598-2557821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 86

               
               
               Conread position:4-226
               
               
               Cow position:chr27:15866908-15867125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:5-133
               
               
               Cow position:chr27:28984163-28984032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr27:526329-526155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-179
               
               
               Cow position:chr27:11256292-11256462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 129

               
               
               Conread position:5-217
               
               
               Cow position:chr27:30036265-30036048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr27:26785211-26784994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):34, 111

               
               
               Conread position:6-177
               
               
               Cow position:chr27:30677693-30677860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:7-215
               
               
               Cow position:chr27:21350239-21350029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 131

               
               
               Conread position:7-220
               
               
               Cow position:chr27:12282082-12281866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 170

               
               
               Conread position:22-224
               
               
               Cow position:chr27:6523902-6524106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 159

               
               
               Conread position:24-224
               
               
               Cow position:chr27:20001780-20001588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:40-224
               
               
               Cow position:chr27:9989845-9990031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:41-221
               
               
               Cow position:chr27:28051429-28051609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 69

               
               
               Conread position:43-154
               
               
               Cow position:chr27:556115-556227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:44-215
               
               
               Cow position:chr27:24055059-24054889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):7, 98

               
               
               Conread position:46-216
               
               
               Cow position:chr27:27469183-27469352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 54

               
               
               Conread position:1-221
               
               
               Cow position:chr28:25701502-25701716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:1-224
               
               
               Cow position:chr28:17209534-17209748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):5, 35

               
               
               Conread position:2-224
               
               
               Cow position:chr28:6478661-6478437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):37, 152

               
               
               Conread position:2-224
               
               
               Cow position:chr28:6535355-6535580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-124
               
               
               Cow position:chr28:4069395-4069273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:3-128
               
               
               Cow position:chr28:30249568-30249440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-144
               
               
               Cow position:chr28:30031784-30031640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-147
               
               
               Cow position:chr28:15032659-15032807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-156
               
               
               Cow position:chr28:19193961-19193806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-158
               
               
               Cow position:chr28:1214339-1214497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr28:24588804-24588965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-163
               
               
               Cow position:chr28:9710712-9710875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-163
               
               
               Cow position:chr28:12701309-12701146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-170
               
               
               Cow position:chr28:7981520-7981687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:3-179
               
               
               Cow position:chr28:23800704-23800529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:3-183
               
               
               Cow position:chr28:25762259-25762093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:3-192
               
               
               Cow position:chr28:16211893-16212079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-199
               
               
               Cow position:chr28:12406722-12406919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-214
               
               
               Cow position:chr28:3653045-3652839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:3-215
               
               
               Cow position:chr28:10870531-10870317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-215
               
               
               Cow position:chr28:12429647-12429433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-215
               
               
               Cow position:chr28:26923187-26923402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr28:1811542-1811747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:3-216
               
               
               Cow position:chr28:4958064-4958274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-217
               
               
               Cow position:chr28:30870516-30870297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-219
               
               
               Cow position:chr28:34082828-34083049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr28:3627455-3627235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr28:20310377-20310157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:3-220
               
               
               Cow position:chr28:20967227-20967447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr28:1384011-1384234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr28:5940928-5940707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr28:6776561-6776782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr28:14492754-14492541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:3-221
               
               
               Cow position:chr28:21379935-21379716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-221
               
               
               Cow position:chr28:23868680-23868459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr28:25409072-25408857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-221
               
               
               Cow position:chr28:34879008-34879219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:482267-482490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr28:600741-600966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:1198637-1198413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:1508321-1508094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):36, 176

               
               
               Conread position:3-224
               
               
               Cow position:chr28:1943854-1944077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr28:2222922-2223148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr28:3001417-3001638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr28:3745398-3745181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:3-224
               
               
               Cow position:chr28:4214332-4214110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr28:5111281-5111503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr28:5211563-5211340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr28:5312416-5312192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:5637492-5637268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:5748264-5748488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:5804708-5804487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 113

               
               
               Conread position:3-224
               
               
               Cow position:chr28:6471998-6472221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:6473814-6474034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:3-224
               
               
               Cow position:chr28:7005469-7005245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:7059672-7059448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:7336425-7336201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:7744540-7744315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:7907104-7907327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 199

               
               
               Conread position:3-224
               
               
               Cow position:chr28:8717511-8717735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:9182311-9182087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:9287951-9288175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:10162667-10162448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:3-224
               
               
               Cow position:chr28:10303279-10303056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:10473400-10473185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr28:10578654-10578880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:10772518-10772301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 30

               
               
               Conread position:3-224
               
               
               Cow position:chr28:11501780-11502004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:12935832-12936056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr28:12998119-12997895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:13323575-13323351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:13463405-13463181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:14150430-14150206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:14666587-14666364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 214

               
               
               Conread position:3-224
               
               
               Cow position:chr28:15054598-15054374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:15687733-15687516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr28:16597589-16597368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):36, 144

               
               
               Conread position:3-224
               
               
               Cow position:chr28:17030656-17030877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr28:17391875-17391651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:17599543-17599775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:17602599-17602825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:17663507-17663731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:20934970-20935194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:21104537-21104751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr28:21362950-21362730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:3-224
               
               
               Cow position:chr28:21896724-21896500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:22254758-22254980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr28:23309894-23310118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:23544064-23543844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr28:23615586-23615361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:23675255-23675032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr28:24487945-24488167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr28:24886302-24886078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:24992929-24992705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:25828837-25828613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:25850003-25849779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:26419559-26419783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:28357342-28357566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:28934521-28934745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:29036210-29036434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:29222843-29223067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:29435365-29435583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr28:29806999-29807221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr28:29823627-29823404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr28:30098318-30098096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):36, 187

               
               
               Conread position:3-224
               
               
               Cow position:chr28:32589141-32588917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:32785985-32786209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:33255763-33255539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr28:33640010-33639788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:3-224
               
               
               Cow position:chr28:34597686-34597462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-225
               
               
               Cow position:chr28:1024891-1025116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-225
               
               
               Cow position:chr28:5336363-5336588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr28:13523125-13522901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 30

               
               
               Conread position:3-227
               
               
               Cow position:chr28:3004076-3004304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr28:32301145-32301366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:3-274
               
               
               Cow position:chr28:18140272-18140540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:4-213
               
               
               Cow position:chr28:12650659-12650448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:4-214
               
               
               Cow position:chr28:5768391-5768179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 140

               
               
               Conread position:4-224
               
               
               Cow position:chr28:10479456-10479672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:4-224
               
               
               Cow position:chr28:18516705-18516928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr28:25070287-25070065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:5-161
               
               
               Cow position:chr28:6319710-6319866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:5-216
               
               
               Cow position:chr28:34731172-34730958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr28:6959669-6959447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr28:7784783-7785008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:5-224
               
               
               Cow position:chr28:28723663-28723446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:6-219
               
               
               Cow position:chr28:24499493-24499278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):33, 128

               
               
               Conread position:9-221
               
               
               Cow position:chr28:16543267-16543478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:14-224
               
               
               Cow position:chr28:12166072-12166281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:19-193
               
               
               Cow position:chr28:15677056-15676884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:19-224
               
               
               Cow position:chr28:7685514-7685718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):20, 143

               
               
               Conread position:21-146
               
               
               Cow position:chr28:17131715-17131840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:22-179
               
               
               Cow position:chr28:12081504-12081658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:23-213
               
               
               Cow position:chr28:14511848-14511659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:23-216
               
               
               Cow position:chr28:24997492-24997686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:24-210
               
               
               Cow position:chr28:34200623-34200814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 115

               
               
               Conread position:24-224
               
               
               Cow position:chr28:4929029-4929232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr28:7443048-7443251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:37-199
               
               
               Cow position:chr28:26718367-26718195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:37-224
               
               
               Cow position:chr28:13373133-13373320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:152
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:39-224
               
               
               Cow position:chr28:30533656-30533839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:44-221
               
               
               Cow position:chr28:28340255-28340077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):5, 109

               
               
               Conread position:49-221
               
               
               Cow position:chr28:22229939-22230111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:225-540
               
               
               Cow position:chr28:5796062-5795767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):183, 77

               
               
               Conread position:1-129
               
               
               Cow position:chr29:27814204-27814076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 95

               
               
               Conread position:1-221
               
               
               Cow position:chr29:45651128-45651349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:1-224
               
               
               Cow position:chr29:21255366-21255146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):38, 177

               
               
               Conread position:1-224
               
               
               Cow position:chr29:29505962-29506185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):37, 174

               
               
               Conread position:3-107
               
               
               Cow position:chr29:40095944-40095838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-113
               
               
               Cow position:chr29:32942058-32941945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-122
               
               
               Cow position:chr29:87803-87924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:3-122
               
               
               Cow position:chr29:2694114-2693992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-124
               
               
               Cow position:chr29:18365210-18365333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:3-127
               
               
               Cow position:chr29:19398073-19397946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-138
               
               
               Cow position:chr29:12852757-12852619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr29:2461569-2461430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr29:13923492-13923345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr29:14116227-14116084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:3-152
               
               
               Cow position:chr29:8589329-8589475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:3-162
               
               
               Cow position:chr29:19761471-19761311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:3-167
               
               
               Cow position:chr29:10297451-10297616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):93, 107

               
               
               Conread position:3-182
               
               
               Cow position:chr29:21445925-21446107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:3-183
               
               
               Cow position:chr29:32329847-32330029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-183
               
               
               Cow position:chr29:35736235-35736052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-193
               
               
               Cow position:chr29:35076537-35076344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-196
               
               
               Cow position:chr29:4366572-4366377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-199
               
               
               Cow position:chr29:607235-607432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-202
               
               
               Cow position:chr29:1742916-1742716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:3-203
               
               
               Cow position:chr29:32807773-32807585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:3-208
               
               
               Cow position:chr29:10032241-10032449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-209
               
               
               Cow position:chr29:8623795-8624005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-212
               
               
               Cow position:chr29:6934896-6934686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-213
               
               
               Cow position:chr29:20999624-20999415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-213
               
               
               Cow position:chr29:43692153-43691944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:3-216
               
               
               Cow position:chr29:960614-960398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr29:5785907-5785690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr29:19524726-19524943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr29:40618442-40618657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-220
               
               
               Cow position:chr29:7604815-7604584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 172

               
               
               Conread position:3-221
               
               
               Cow position:chr29:16170133-16170355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:3-221
               
               
               Cow position:chr29:24806868-24806647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr29:26161422-26161641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:3-221
               
               
               Cow position:chr29:27259470-27259693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr29:35739288-35739506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:3-224
               
               
               Cow position:chr29:727142-726918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:2103255-2103036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr29:2307414-2307191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 149

               
               
               Conread position:3-224
               
               
               Cow position:chr29:2837923-2838147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:3330005-3329781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:3584805-3585023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:3-224
               
               
               Cow position:chr29:5240808-5240583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:3-224
               
               
               Cow position:chr29:5961416-5961194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr29:6871871-6872088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr29:7811783-7812008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:7847805-7847581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:9639116-9639341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:10644002-10644223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr29:10820302-10820526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:11119299-11119523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:11365429-11365208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:3-224
               
               
               Cow position:chr29:11786415-11786192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr29:13027630-13027411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):93, 39

               
               
               Conread position:3-224
               
               
               Cow position:chr29:13623961-13624185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:13849533-13849758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr29:14313737-14313960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:3-224
               
               
               Cow position:chr29:15072068-15072292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:16065123-16064899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:16097225-16097001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:16185366-16185590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:17408539-17408321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:3-224
               
               
               Cow position:chr29:18010988-18010764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:19514932-19515157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:19619856-19620080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:19890978-19890757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:3-224
               
               
               Cow position:chr29:20254577-20254355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:3-224
               
               
               Cow position:chr29:21429447-21429671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:21474562-21474338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:22279785-22279563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 150

               
               
               Conread position:3-224
               
               
               Cow position:chr29:22746313-22746089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:23980123-23979900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:3-224
               
               
               Cow position:chr29:24578065-24577842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr29:24951882-24951659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr29:24983158-24983378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):36, 78

               
               
               Conread position:3-224
               
               
               Cow position:chr29:25929095-25929318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:3-224
               
               
               Cow position:chr29:26263036-26262811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr29:27702490-27702266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:27976592-27976816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:28696966-28697190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:31765453-31765229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:32289797-32289580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):27, 143

               
               
               Conread position:3-224
               
               
               Cow position:chr29:32292007-32291783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:32316482-32316259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:3-224
               
               
               Cow position:chr29:32353008-32352786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr29:32543550-32543327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr29:32556331-32556555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:34794446-34794674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:35002261-35002485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:35273626-35273850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:36633946-36634160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr29:38229420-38229196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:38349949-38350165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:3-224
               
               
               Cow position:chr29:39076306-39076530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:40157157-40156933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:40294720-40294496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:40954482-40954706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:42255565-42255789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:43326927-43326703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:45462644-45462422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr29:45626749-45626529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:3-227
               
               
               Cow position:chr29:45207921-45207696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:4-202
               
               
               Cow position:chr29:4864731-4864530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:4-211
               
               
               Cow position:chr29:42940390-42940183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 180

               
               
               Conread position:4-216
               
               
               Cow position:chr29:12797994-12797779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:4-224
               
               
               Cow position:chr29:5977908-5978129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:4-224
               
               
               Cow position:chr29:6218401-6218617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr29:14208156-14208378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:4-224
               
               
               Cow position:chr29:16101706-16101929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr29:27857968-27857761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:4-224
               
               
               Cow position:chr29:40498464-40498687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-232
               
               
               Cow position:chr29:3106708-3106487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:5-193
               
               
               Cow position:chr29:7700980-7701170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:5-224
               
               
               Cow position:chr29:45053-45273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):36, 193

               
               
               Conread position:5-224
               
               
               Cow position:chr29:7427731-7427953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr29:34331017-34331239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:5-224
               
               
               Cow position:chr29:42807395-42807180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 197

               
               
               Conread position:7-224
               
               
               Cow position:chr29:13099581-13099362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):29, 210

               
               
               Conread position:10-216
               
               
               Cow position:chr29:18879506-18879701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 77

               
               
               Conread position:11-224
               
               
               Cow position:chr29:27007290-27007084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 123

               
               
               Conread position:12-224
               
               
               Cow position:chr29:9079393-9079608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:18-149
               
               
               Cow position:chr29:13640134-13640268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:18-224
               
               
               Cow position:chr29:32732504-32732289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:23-183
               
               
               Cow position:chr29:43517586-43517751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:26-146
               
               
               Cow position:chr29:20014817-20014694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:26-227
               
               
               Cow position:chr29:2184789-2184601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:29-224
               
               
               Cow position:chr29:4200763-4200567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:35-224
               
               
               Cow position:chr29:26289927-26290111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:35-224
               
               
               Cow position:chr29:29589616-29589807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:40-217
               
               
               Cow position:chr29:5787118-5787296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:149
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:42-224
               
               
               Cow position:chr29:407902-408075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:43-224
               
               
               Cow position:chr29:21325789-21325953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):53, 93

               
               
               Conread position:49-224
               
               
               Cow position:chr29:16347564-16347390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):47, 147

               
               
               Conread position:1-167
               
               
               Cow position:chr3:74391580-74391746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 80

               
               
               Conread position:1-179
               
               
               Cow position:chr3:49541880-49542067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:1-193
               
               
               Cow position:chr3:51235173-51235358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:1-197
               
               
               Cow position:chr3:4017830-4017636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:1-199
               
               
               Cow position:chr3:19108887-19108685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 148

               
               
               Conread position:2-225
               
               
               Cow position:chr3:22352940-22352719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:3-112
               
               
               Cow position:chr3:65178697-65178586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:3-125
               
               
               Cow position:chr3:29282086-29281961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr3:13291431-13291305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr3:13360774-13360647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr3:16156849-16156723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-128
               
               
               Cow position:chr3:58336633-58336505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-130
               
               
               Cow position:chr3:22918849-22918720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:3-133
               
               
               Cow position:chr3:39878852-39878984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-133
               
               
               Cow position:chr3:54876990-54876857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr3:20074414-20074275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr3:73763305-73763449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr3:4135655-4135801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr3:6024532-6024678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr3:30752910-30752764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr3:36595025-36594879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chr3:49976200-49976346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-153
               
               
               Cow position:chr3:28765085-28765238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-153
               
               
               Cow position:chr3:39232038-39231885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr3:61199999-61199844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr3:77272502-77272662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:3-163
               
               
               Cow position:chr3:12932093-12931930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr3:12797735-12797902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr3:76136648-76136478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:143
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-169
               
               
               Cow position:chr3:77472662-77472826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-170
               
               
               Cow position:chr3:14613354-14613189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-170
               
               
               Cow position:chr3:68500786-68500616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-173
               
               
               Cow position:chr3:22220467-22220296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-175
               
               
               Cow position:chr3:40205730-40205555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr3:68043179-68043353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:3-178
               
               
               Cow position:chr3:25753579-25753403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 108

               
               
               Conread position:3-183
               
               
               Cow position:chr3:39921619-39921801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-188
               
               
               Cow position:chr3:46006418-46006241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-189
               
               
               Cow position:chr3:29391795-29391984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 95

               
               
               Conread position:3-190
               
               
               Cow position:chr3:24432708-24432518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-193
               
               
               Cow position:chr3:19753408-19753601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-193
               
               
               Cow position:chr3:83767572-83767379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr3:14922979-14922785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr3:20999745-20999939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-195
               
               
               Cow position:chr3:11784686-11784495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-196
               
               
               Cow position:chr3:70215498-70215302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:156
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr3:4031069-4030871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-199
               
               
               Cow position:chr3:62793755-62793945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:3-200
               
               
               Cow position:chr3:33254535-33254732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-200
               
               
               Cow position:chr3:49429442-49429627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr3:15988266-15988065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-201
               
               
               Cow position:chr3:58766470-58766269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-202
               
               
               Cow position:chr3:7677816-7677618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:3-202
               
               
               Cow position:chr3:37600057-37599861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-202
               
               
               Cow position:chr3:42424174-42424369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 46

               
               
               Conread position:3-204
               
               
               Cow position:chr3:14028312-14028107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-205
               
               
               Cow position:chr3:69271928-69271723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr3:64655535-64655329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:3-209
               
               
               Cow position:chr3:19947531-19947326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:3-209
               
               
               Cow position:chr3:26891817-26891608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-212
               
               
               Cow position:chr3:14280006-14279801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:3-215
               
               
               Cow position:chr3:16657548-16657757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:3-215
               
               
               Cow position:chr3:29582435-29582221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):37, 122

               
               
               Conread position:3-215
               
               
               Cow position:chr3:74847854-74848059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr3:14680414-14680197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr3:23010682-23010463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 193

               
               
               Conread position:3-217
               
               
               Cow position:chr3:28435372-28435589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr3:36861777-36861990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:3-217
               
               
               Cow position:chr3:49134210-49134427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr3:64281994-64282207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:3-217
               
               
               Cow position:chr3:79595959-79595744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:3-218
               
               
               Cow position:chr3:26920046-26919831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:3-218
               
               
               Cow position:chr3:66829619-66829830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-219
               
               
               Cow position:chr3:26596356-26596148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:3-219
               
               
               Cow position:chr3:33326716-33326489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:3-220
               
               
               Cow position:chr3:21779451-21779671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr3:34557051-34557263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:3-221
               
               
               Cow position:chr3:2851919-2852131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:3-221
               
               
               Cow position:chr3:2904131-2904337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr3:18353042-18353265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:3-221
               
               
               Cow position:chr3:24572840-24573061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr3:26993451-26993232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-221
               
               
               Cow position:chr3:27866989-27866762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:3-221
               
               
               Cow position:chr3:30615614-30615831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-221
               
               
               Cow position:chr3:31224602-31224384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:3-221
               
               
               Cow position:chr3:37628212-37627997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):42, 119

               
               
               Conread position:3-221
               
               
               Cow position:chr3:44927144-44926919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr3:64653995-64653774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr3:65473756-65473536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-221
               
               
               Cow position:chr3:66968553-66968773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-222
               
               
               Cow position:chr3:46506095-46505873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-222
               
               
               Cow position:chr3:55374402-55374190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):37, 99

               
               
               Conread position:3-223
               
               
               Cow position:chr3:22724444-22724666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:3-224
               
               
               Cow position:chr3:173831-173609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 125

               
               
               Conread position:3-224
               
               
               Cow position:chr3:302548-302334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:3-224
               
               
               Cow position:chr3:597434-597212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:3-224
               
               
               Cow position:chr3:2075107-2074885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr3:2432328-2432550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:3-224
               
               
               Cow position:chr3:2707547-2707766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr3:2791078-2790854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:2834212-2834436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:2866328-2866552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:3031558-3031342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:3-224
               
               
               Cow position:chr3:3552643-3552425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr3:4039607-4039829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:3-224
               
               
               Cow position:chr3:4191610-4191834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:5474866-5474642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:6442395-6442171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:6529319-6529095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:6689155-6688930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:6838356-6838132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:6864985-6864763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr3:6897153-6896929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:3-224
               
               
               Cow position:chr3:7245779-7246001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr3:8605587-8605802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr3:10243986-10243762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:10412573-10412349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr3:11417873-11417649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:12665464-12665240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:12676312-12676539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr3:12750224-12750003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr3:13035169-13035393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:13117735-13117950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr3:13248697-13248917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr3:13311677-13311903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:13723385-13723609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:14285060-14284838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:3-224
               
               
               Cow position:chr3:15663122-15663341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):31, 96

               
               
               Conread position:3-224
               
               
               Cow position:chr3:18814832-18814609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:18862767-18862543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:18886784-18886562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr3:19717942-19718164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr3:19794765-19794989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:19881376-19881152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:19942217-19941995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:3-224
               
               
               Cow position:chr3:20379392-20379614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:3-224
               
               
               Cow position:chr3:20475834-20475617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:3-224
               
               
               Cow position:chr3:23204351-23204571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr3:24265525-24265301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:24442776-24443000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:24585904-24586133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:25057008-25056795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr3:26567103-26566877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 144

               
               
               Conread position:3-224
               
               
               Cow position:chr3:26742546-26742770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr3:27245368-27245587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr3:27454610-27454830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr3:27782996-27783203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr3:29573799-29574023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:30321583-30321360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr3:30351602-30351378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:30623201-30622976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:31120810-31121034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:31396698-31396476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:3-224
               
               
               Cow position:chr3:32490386-32490610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:33124928-33125152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:33269553-33269334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr3:35043486-35043262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:35109553-35109329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:35342977-35342753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:35612473-35612257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:3-224
               
               
               Cow position:chr3:35619879-35619660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr3:36121502-36121278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:36417066-36416842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:36671291-36671517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:36874734-36874958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:37894158-37893934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:38096227-38096002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:38252157-38251947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:3-224
               
               
               Cow position:chr3:38869893-38869670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 151

               
               
               Conread position:3-224
               
               
               Cow position:chr3:39214700-39214475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:3-224
               
               
               Cow position:chr3:39327872-39327651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr3:40049215-40048992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:40101532-40101749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:3-224
               
               
               Cow position:chr3:40520613-40520837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:40826723-40826501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr3:42846671-42846449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 195

               
               
               Conread position:3-224
               
               
               Cow position:chr3:43084566-43084345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr3:45184660-45184882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr3:45675451-45675675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:45977826-45977605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr3:46683160-46682936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:46857957-46858181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:47078286-47078510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:47272552-47272777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:47986766-47986542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:48273105-48272884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:3-224
               
               
               Cow position:chr3:49387975-49387755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:3-224
               
               
               Cow position:chr3:49564343-49564119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:49605115-49605339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:49610880-49611105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:49907706-49907930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:49931162-49930938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:49999462-49999239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:50204891-50204668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:50921364-50921142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:3-224
               
               
               Cow position:chr3:52149959-52150183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:52257199-52257412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:3-224
               
               
               Cow position:chr3:55245870-55245646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:56103066-56102843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:3-224
               
               
               Cow position:chr3:56160499-56160712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr3:56297711-56297487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:56484933-56485157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:56645004-56645228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:56697164-56696951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:3-224
               
               
               Cow position:chr3:57742839-57742616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 173

               
               
               Conread position:3-224
               
               
               Cow position:chr3:59603128-59602904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:63688585-63688807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:3-224
               
               
               Cow position:chr3:65085260-65085037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:3-224
               
               
               Cow position:chr3:66736246-66736469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr3:66887871-66888093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr3:68274167-68273943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:68510012-68510233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr3:72174979-72175203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:72633399-72633176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:72669233-72669459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:73416325-73416100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr3:73450987-73451211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:73637206-73636983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr3:74849820-74850044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:3-224
               
               
               Cow position:chr3:75771808-75772032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:75997562-75997786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:76000636-76000858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr3:76864758-76864534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:77226058-77225836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:3-224
               
               
               Cow position:chr3:78520374-78520150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:81101405-81101181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-225
               
               
               Cow position:chr3:53519130-53518904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr3:5951297-5951515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-226
               
               
               Cow position:chr3:6785643-6785418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr3:35884794-35885020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr3:26660639-26660860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:4-170
               
               
               Cow position:chr3:60932591-60932426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 134

               
               
               Conread position:4-171
               
               
               Cow position:chr3:18575298-18575459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):92, 29

               
               
               Conread position:4-200
               
               
               Cow position:chr3:22235176-22235372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):32, 148

               
               
               Conread position:4-221
               
               
               Cow position:chr3:56148621-56148398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr3:2117771-2117549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:4-224
               
               
               Cow position:chr3:3300967-3300745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:4-224
               
               
               Cow position:chr3:7476595-7476817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:4-224
               
               
               Cow position:chr3:11384638-11384421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:4-224
               
               
               Cow position:chr3:14438662-14438881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):32, 122

               
               
               Conread position:4-224
               
               
               Cow position:chr3:14864208-14863987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 158

               
               
               Conread position:4-224
               
               
               Cow position:chr3:18759100-18759319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):92, 29

               
               
               Conread position:4-224
               
               
               Cow position:chr3:31418859-31418639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:4-224
               
               
               Cow position:chr3:31934012-31934235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 200

               
               
               Conread position:4-224
               
               
               Cow position:chr3:54653849-54654072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr3:63736712-63736491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:4-224
               
               
               Cow position:chr3:68696640-68696862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 150

               
               
               Conread position:4-224
               
               
               Cow position:chr3:68717384-68717607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr3:68870424-68870647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr3:79668436-79668213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-226
               
               
               Cow position:chr3:43189944-43190169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-227
               
               
               Cow position:chr3:59864805-59864582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:5-134
               
               
               Cow position:chr3:2507317-2507448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:5-174
               
               
               Cow position:chr3:72390242-72390071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):25, 61

               
               
               Conread position:5-202
               
               
               Cow position:chr3:23169901-23170084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:5-209
               
               
               Cow position:chr3:17059143-17059334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 28

               
               
               Conread position:5-217
               
               
               Cow position:chr3:61677859-61677647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 183

               
               
               Conread position:5-220
               
               
               Cow position:chr3:63238711-63238923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:5-221
               
               
               Cow position:chr3:75038517-75038736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr3:5887209-5886989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:5-224
               
               
               Cow position:chr3:12673054-12673272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:5-224
               
               
               Cow position:chr3:14466536-14466759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):34, 160

               
               
               Conread position:5-224
               
               
               Cow position:chr3:16226199-16225980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 189

               
               
               Conread position:5-224
               
               
               Cow position:chr3:23497434-23497655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:5-224
               
               
               Cow position:chr3:37983041-37983263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):10, 14

               
               
               Conread position:5-224
               
               
               Cow position:chr3:42186794-42186572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr3:42977267-42977487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):39, 157

               
               
               Conread position:5-224
               
               
               Cow position:chr3:46753171-46752949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr3:69962521-69962744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 160

               
               
               Conread position:5-224
               
               
               Cow position:chr3:76187863-76187642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):34, 167

               
               
               Conread position:6-219
               
               
               Cow position:chr3:64376387-64376603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:6-224
               
               
               Cow position:chr3:1034186-1033965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:6-224
               
               
               Cow position:chr3:54788407-54788180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:6-224
               
               
               Cow position:chr3:63202561-63202345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):21, 109

               
               
               Conread position:6-224
               
               
               Cow position:chr3:64024708-64024929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:7-221
               
               
               Cow position:chr3:58129414-58129196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 105

               
               
               Conread position:7-224
               
               
               Cow position:chr3:49416524-49416744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:9-218
               
               
               Cow position:chr3:48603573-48603361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:12-186
               
               
               Cow position:chr3:14724436-14724260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:149
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):24, 50

               
               
               Conread position:18-224
               
               
               Cow position:chr3:44101363-44101155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:19-218
               
               
               Cow position:chr3:44536677-44536879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:159
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:21-224
               
               
               Cow position:chr3:42602966-42602759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:22-221
               
               
               Cow position:chr3:30938807-30938602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:22-221
               
               
               Cow position:chr3:60177793-60177995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):17, 103

               
               
               Conread position:22-224
               
               
               Cow position:chr3:3837289-3837490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):14, 94

               
               
               Conread position:22-224
               
               
               Cow position:chr3:39856771-39856566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:22-224
               
               
               Cow position:chr3:58950768-58950564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:23-218
               
               
               Cow position:chr3:40285014-40285207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:23-224
               
               
               Cow position:chr3:48362243-48362040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):6, 52

               
               
               Conread position:23-224
               
               
               Cow position:chr3:57996865-57996661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr3:32412180-32412383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr3:42500373-42500173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):150, 17

               
               
               Conread position:24-224
               
               
               Cow position:chr3:51548065-51547862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:26-213
               
               
               Cow position:chr3:7481203-7481388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:26-224
               
               
               Cow position:chr3:37280699-37280498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:26-224
               
               
               Cow position:chr3:63000078-63000266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 54

               
               
               Conread position:28-224
               
               
               Cow position:chr3:39555285-39555485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 84

               
               
               Conread position:33-224
               
               
               Cow position:chr3:21005106-21004915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 138

               
               
               Conread position:37-224
               
               
               Cow position:chr3:33691759-33691947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):62, 100

               
               
               Conread position:40-192
               
               
               Cow position:chr3:5972253-5972406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:40-221
               
               
               Cow position:chr3:6854339-6854521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:152
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr3:34027587-34027772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr3:49463272-49463452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):56, 162

               
               
               Conread position:41-224
               
               
               Cow position:chr3:30909088-30908906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:44-188
               
               
               Cow position:chr3:7772734-7772878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:47-224
               
               
               Cow position:chr3:36571418-36571244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:53-220
               
               
               Cow position:chr3:65989195-65989028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:59-221
               
               
               Cow position:chr3:19797884-19798046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:225-540
               
               
               Cow position:chr3:58946183-58945862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:1-112
               
               
               Cow position:chr4:46526209-46526094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1-179
               
               
               Cow position:chr4:34223082-34222904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 109

               
               
               Conread position:1-224
               
               
               Cow position:chr4:36754920-36754693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 112

               
               
               Conread position:2-221
               
               
               Cow position:chr4:1047131-1047353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-106
               
               
               Cow position:chr4:21045029-21045135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-122
               
               
               Cow position:chr4:30474511-30474389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-122
               
               
               Cow position:chr4:31135906-31135786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-125
               
               
               Cow position:chr4:24179346-24179471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr4:8700271-8700144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr4:59452386-59452512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-127
               
               
               Cow position:chr4:64155860-64155733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-129
               
               
               Cow position:chr4:54170557-54170425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-139
               
               
               Cow position:chr4:5882607-5882468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr4:59889443-59889589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr4:6445893-6445732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-163
               
               
               Cow position:chr4:3128987-3128825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr4:11918820-11918998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:3-187
               
               
               Cow position:chr4:1007024-1006838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:3-187
               
               
               Cow position:chr4:33069708-33069891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:3-194
               
               
               Cow position:chr4:54758123-54758317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr4:25192752-25192943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:3-199
               
               
               Cow position:chr4:16606043-16606242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:3-201
               
               
               Cow position:chr4:11201000-11200799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-202
               
               
               Cow position:chr4:2191162-2191365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-205
               
               
               Cow position:chr4:652159-651954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-205
               
               
               Cow position:chr4:39457801-39457587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr4:54161931-54162140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-211
               
               
               Cow position:chr4:22024958-22025169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-213
               
               
               Cow position:chr4:12751496-12751283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-213
               
               
               Cow position:chr4:15055935-15055722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-213
               
               
               Cow position:chr4:61192113-61191907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 84

               
               
               Conread position:3-215
               
               
               Cow position:chr4:1239299-1239505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):41, 79

               
               
               Conread position:3-215
               
               
               Cow position:chr4:5578690-5578905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr4:19141134-19140919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr4:25578733-25578518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:3-215
               
               
               Cow position:chr4:49744803-49744588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-219
               
               
               Cow position:chr4:5610879-5611087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:3-219
               
               
               Cow position:chr4:12605748-12605958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-219
               
               
               Cow position:chr4:65431402-65431194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr4:17751802-17752022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr4:27882024-27881804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr4:67767551-67767331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr4:2263571-2263798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr4:17473213-17472998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:3-221
               
               
               Cow position:chr4:19957159-19956936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr4:22904813-22904595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-221
               
               
               Cow position:chr4:27996905-27996687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-221
               
               
               Cow position:chr4:37786433-37786213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr4:41097103-41096890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr4:46711472-46711695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr4:54931480-54931695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-221
               
               
               Cow position:chr4:61449645-61449424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr4:65842766-65842982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:3-224
               
               
               Cow position:chr4:162212-161990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:3-224
               
               
               Cow position:chr4:359014-358793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):30, 171

               
               
               Conread position:3-224
               
               
               Cow position:chr4:606737-606513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:1368934-1369151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:3-224
               
               
               Cow position:chr4:1499959-1500181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 165

               
               
               Conread position:3-224
               
               
               Cow position:chr4:1927503-1927727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:2140190-2139969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:3-224
               
               
               Cow position:chr4:2349587-2349805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 180

               
               
               Conread position:3-224
               
               
               Cow position:chr4:3070041-3069825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr4:3252420-3252636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:3-224
               
               
               Cow position:chr4:3284226-3284450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:3354810-3355029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr4:3449934-3449704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:3474803-3474584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr4:4185307-4185086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 106

               
               
               Conread position:3-224
               
               
               Cow position:chr4:4379505-4379292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr4:4419182-4418954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:4850473-4850249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:6000302-6000525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr4:6034895-6035119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:6266084-6266306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr4:6487236-6487459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr4:6806439-6806215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:7779532-7779308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:8559874-8560091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:3-224
               
               
               Cow position:chr4:8649205-8648985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):36, 143

               
               
               Conread position:3-224
               
               
               Cow position:chr4:8677933-8677709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:9041078-9040854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:9357370-9357146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:10044635-10044859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:10122538-10122314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:10403583-10403807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:10424624-10424400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:10553374-10553156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr4:10884770-10884548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:3-224
               
               
               Cow position:chr4:11100465-11100687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:3-224
               
               
               Cow position:chr4:11217886-11217671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr4:12238102-12238326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:15617826-15617602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:15802707-15802931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:15814164-15814386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:3-224
               
               
               Cow position:chr4:15873507-15873726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:3-224
               
               
               Cow position:chr4:16363332-16363108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:16641950-16641726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:17067981-17068200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:3-224
               
               
               Cow position:chr4:17235153-17234929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:17821662-17821438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:17877089-17876865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:18004846-18004622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:18331218-18330994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:18813078-18813302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:19237199-19236977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr4:19264800-19264588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:20243288-20243064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:20616586-20616810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:21342205-21341981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:21364201-21363988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr4:21843388-21843612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:22316856-22316633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr4:22850543-22850763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr4:23304209-23304433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:23437351-23437572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 151

               
               
               Conread position:3-224
               
               
               Cow position:chr4:23451888-23452104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr4:23525711-23525489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:3-224
               
               
               Cow position:chr4:24140005-24139781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:25596353-25596577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:25878551-25878331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):93, 157

               
               
               Conread position:3-224
               
               
               Cow position:chr4:25983417-25983197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:3-224
               
               
               Cow position:chr4:26399919-26399698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:3-224
               
               
               Cow position:chr4:26745647-26745426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr4:26885791-26886015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:26911913-26911689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 137

               
               
               Conread position:3-224
               
               
               Cow position:chr4:27337347-27337120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:27539794-27539574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:3-224
               
               
               Cow position:chr4:28739698-28739475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr4:28835690-28835470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):36, 141

               
               
               Conread position:3-224
               
               
               Cow position:chr4:29530325-29530549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:30508330-30508107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr4:31484850-31485074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:31562099-31562323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:33020500-33020724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:33171288-33171064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:33496691-33496470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:3-224
               
               
               Cow position:chr4:33628900-33629124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:33831298-33831522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:34175850-34176076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:34181615-34181828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):128, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr4:34700425-34700643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr4:34712949-34712725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:35868326-35868102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr4:35929615-35929390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr4:36026139-36026362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:3-224
               
               
               Cow position:chr4:36074152-36073929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-224
               
               
               Cow position:chr4:38564562-38564786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:39645884-39645660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:3-224
               
               
               Cow position:chr4:40697335-40697559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:41037958-41037736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr4:41131015-41131239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:41472698-41472922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:41957893-41957669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:41962028-41961804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:43316517-43316741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:43884225-43884001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:44593270-44593484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 141

               
               
               Conread position:3-224
               
               
               Cow position:chr4:44778060-44778285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:47115968-47115743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:47263909-47263685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:47949207-47949431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:48029990-48029766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:52086288-52086064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr4:54695900-54696123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:54810715-54810939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:55670376-55670157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:3-224
               
               
               Cow position:chr4:58291871-58291649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:3-224
               
               
               Cow position:chr4:59783808-59783584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:60224743-60224964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr4:60579998-60580222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:60855892-60855668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:61242411-61242191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr4:62453856-62454079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr4:62906890-62907113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:3-224
               
               
               Cow position:chr4:62962228-62962452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:65198669-65198893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:65581651-65581423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:65816527-65816749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr4:65890913-65890701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):127, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr4:65918812-65918597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr4:67383409-67383189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr4:67394359-67394135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr4:68795836-68795620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr4:68880649-68880421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:3-226
               
               
               Cow position:chr4:9796221-9796444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-226
               
               
               Cow position:chr4:27287975-27288199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:3-226
               
               
               Cow position:chr4:64874895-64875120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 211

               
               
               Conread position:3-227
               
               
               Cow position:chr4:26874776-26875003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-229
               
               
               Cow position:chr4:34166904-34167130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:3-266
               
               
               Cow position:chr4:5441529-5441795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:4-215
               
               
               Cow position:chr4:55509724-55509940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-219
               
               
               Cow position:chr4:61724369-61724154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:4-224
               
               
               Cow position:chr4:6863102-6863323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:4-224
               
               
               Cow position:chr4:10135071-10135294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr4:12841076-12840849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):31, 114

               
               
               Conread position:4-224
               
               
               Cow position:chr4:44733750-44733530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:4-224
               
               
               Cow position:chr4:46530122-46530337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:4-224
               
               
               Cow position:chr4:47752455-47752239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):56, 90

               
               
               Conread position:4-224
               
               
               Cow position:chr4:57987874-57987652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:4-227
               
               
               Cow position:chr4:3961765-3961983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:4-227
               
               
               Cow position:chr4:27177957-27177733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 173

               
               
               Conread position:5-136
               
               
               Cow position:chr4:48798529-48798663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-198
               
               
               Cow position:chr4:22724067-22723878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:5-214
               
               
               Cow position:chr4:2601336-2601130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:5-224
               
               
               Cow position:chr4:3170410-3170190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:5-224
               
               
               Cow position:chr4:11107954-11108166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:5-224
               
               
               Cow position:chr4:16832420-16832642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):34, 140

               
               
               Conread position:5-224
               
               
               Cow position:chr4:38180884-38180668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:5-224
               
               
               Cow position:chr4:60651724-60651501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:5-224
               
               
               Cow position:chr4:66174191-66174415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:6-196
               
               
               Cow position:chr4:9168965-9169157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:6-221
               
               
               Cow position:chr4:38909629-38909411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:7-224
               
               
               Cow position:chr4:36812147-36811929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):8, 12

               
               
               Conread position:8-119
               
               
               Cow position:chr4:6457921-6458035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:14-202
               
               
               Cow position:chr4:11026097-11026285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:14-215
               
               
               Cow position:chr4:8703913-8703721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:18-221
               
               
               Cow position:chr4:14142422-14142218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:164
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:19-224
               
               
               Cow position:chr4:28173759-28173964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:165
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):19, 9

               
               
               Conread position:22-224
               
               
               Cow position:chr4:27293976-27294180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):7, 44

               
               
               Conread position:23-127
               
               
               Cow position:chr4:43867358-43867465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:23-183
               
               
               Cow position:chr4:61651454-61651606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 75

               
               
               Conread position:23-215
               
               
               Cow position:chr4:8935998-8935802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 5

               
               
               Conread position:23-220
               
               
               Cow position:chr4:59333795-59333991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:23-224
               
               
               Cow position:chr4:27292783-27292982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 50

               
               
               Conread position:24-173
               
               
               Cow position:chr4:5485999-5486149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:24-221
               
               
               Cow position:chr4:7048952-7049152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr4:4086259-4086455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:24-224
               
               
               Cow position:chr4:15463319-15463518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:26-224
               
               
               Cow position:chr4:27518263-27518464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:34-224
               
               
               Cow position:chr4:11193048-11192863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr4:32215246-32215062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):56, 45

               
               
               Conread position:40-224
               
               
               Cow position:chr4:50019400-50019585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:150
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:42-224
               
               
               Cow position:chr4:5874182-5874010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:44-217
               
               
               Cow position:chr4:45499271-45499099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 131

               
               
               Conread position:47-224
               
               
               Cow position:chr4:20606720-20606535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 63

               
               
               Conread position:226-511
               
               
               Cow position:chr4:1497857-1498140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 201

               
               
               Conread position:249-444
               
               
               Cow position:chr4:11111452-11111645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):157, 9

               
               
               Conread position:1-118
               
               
               Cow position:chr5:50599293-50599173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1-124
               
               
               Cow position:chr5:40828145-40828270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:1-170
               
               
               Cow position:chr5:41951830-41951996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:1-192
               
               
               Cow position:chr5:54088949-54088761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):5, 23

               
               
               Conread position:1-220
               
               
               Cow position:chr5:6180775-6180548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1-221
               
               
               Cow position:chr5:9091190-9091410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:1-224
               
               
               Cow position:chr5:33536847-33536625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):5, 34

               
               
               Conread position:1-224
               
               
               Cow position:chr5:62159691-62159916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:2-219
               
               
               Cow position:chr5:7552999-7552789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:2-224
               
               
               Cow position:chr5:18404825-18405046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):94, 152

               
               
               Conread position:3-105
               
               
               Cow position:chr5:5787098-5787203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-107
               
               
               Cow position:chr5:12872678-12872572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-118
               
               
               Cow position:chr5:52041257-52041370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-125
               
               
               Cow position:chr5:6060399-6060524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr5:14558226-14558353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr5:58900812-58900939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-130
               
               
               Cow position:chr5:39749210-39749340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr5:43984316-43984171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr5:53185271-53185414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-150
               
               
               Cow position:chr5:7042473-7042324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:3-153
               
               
               Cow position:chr5:2395076-2395229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr5:59915-60076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:3-163
               
               
               Cow position:chr5:39174011-39174174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-166
               
               
               Cow position:chr5:279948-280113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr5:27178867-27178703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:3-169
               
               
               Cow position:chr5:35180361-35180192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr5:7498753-7498929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr5:58353438-58353274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:3-178
               
               
               Cow position:chr5:15362276-15362098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-178
               
               
               Cow position:chr5:28013089-28012911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr5:28026626-28026453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:3-178
               
               
               Cow position:chr5:55088086-55087907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:3-183
               
               
               Cow position:chr5:43437710-43437893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr5:60446664-60446479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-189
               
               
               Cow position:chr5:2704319-2704509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:3-191
               
               
               Cow position:chr5:45705243-45705053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:3-194
               
               
               Cow position:chr5:34527798-34527615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-196
               
               
               Cow position:chr5:7175530-7175334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:157
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr5:4963154-4963354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr5:47855059-47854860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr5:59782530-59782729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-203
               
               
               Cow position:chr5:41548318-41548514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):119, 31

               
               
               Conread position:3-209
               
               
               Cow position:chr5:25912950-25912743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):30, 123

               
               
               Conread position:3-209
               
               
               Cow position:chr5:68337284-68337481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-210
               
               
               Cow position:chr5:16894918-16895126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:3-214
               
               
               Cow position:chr5:21524285-21524071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr5:40270612-40270823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-216
               
               
               Cow position:chr5:62377597-62377382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:3-217
               
               
               Cow position:chr5:9002878-9003095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr5:34192152-34191938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:3-217
               
               
               Cow position:chr5:44709140-44709355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:3-219
               
               
               Cow position:chr5:29558824-29558610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:3-219
               
               
               Cow position:chr5:46671835-46671624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr5:3500896-3501116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr5:15723083-15723304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:3-220
               
               
               Cow position:chr5:59064675-59064456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:3-221
               
               
               Cow position:chr5:4629992-4629779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:3-221
               
               
               Cow position:chr5:7140868-7141089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-221
               
               
               Cow position:chr5:10853602-10853821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-221
               
               
               Cow position:chr5:16085578-16085798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 158

               
               
               Conread position:3-221
               
               
               Cow position:chr5:24101882-24101661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr5:34709001-34708780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr5:41228817-41229036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):41, 31

               
               
               Conread position:3-221
               
               
               Cow position:chr5:41523763-41523988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:3-221
               
               
               Cow position:chr5:41586506-41586285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr5:50899865-50899645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:3-223
               
               
               Cow position:chr5:22857401-22857625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-223
               
               
               Cow position:chr5:26096503-26096294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr5:443077-443301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:1059335-1059559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:1338689-1338913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:1383209-1382989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:3-224
               
               
               Cow position:chr5:2917693-2917470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:3-224
               
               
               Cow position:chr5:3970756-3970533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-224
               
               
               Cow position:chr5:4015640-4015864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:4165859-4165639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr5:4683269-4683492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:4753901-4754125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:5106455-5106232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:3-224
               
               
               Cow position:chr5:5715858-5716067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):93, 39

               
               
               Conread position:3-224
               
               
               Cow position:chr5:6124930-6125154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:6151600-6151824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:6455431-6455655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:6585222-6585445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:6694766-6694542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:7396475-7396256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:3-224
               
               
               Cow position:chr5:8178366-8178147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:3-224
               
               
               Cow position:chr5:10066318-10066542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:10262044-10262267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):36, 175

               
               
               Conread position:3-224
               
               
               Cow position:chr5:10542444-10542662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr5:10840232-10840461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:12133825-12133602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:3-224
               
               
               Cow position:chr5:12212765-12212541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:12337506-12337282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:12921629-12921406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:3-224
               
               
               Cow position:chr5:14543069-14543293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:14636347-14636570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr5:15677292-15677069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr5:15761138-15761362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:17387185-17387409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:17645850-17646077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:18118743-18118967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:18558177-18558396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:3-224
               
               
               Cow position:chr5:18667539-18667315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:18703199-18703417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr5:18901551-18901342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:3-224
               
               
               Cow position:chr5:19978682-19978906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:20107795-20108019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:21188166-21187942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:21189450-21189229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:3-224
               
               
               Cow position:chr5:24087818-24088044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:24159167-24158943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:24299245-24299021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:24577668-24577444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:26052963-26052739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:26135036-26135259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:3-224
               
               
               Cow position:chr5:28947179-28947396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 134

               
               
               Conread position:3-224
               
               
               Cow position:chr5:29223033-29223257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:29255982-29256204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr5:29634661-29634437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:29769292-29769067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:30582558-30582334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:31709532-31709308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:32755219-32755436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-224
               
               
               Cow position:chr5:32964828-32965057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:3-224
               
               
               Cow position:chr5:34300112-34299900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:3-224
               
               
               Cow position:chr5:34524008-34524228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:3-224
               
               
               Cow position:chr5:34683130-34683352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:3-224
               
               
               Cow position:chr5:35207474-35207250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:36906830-36907054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:37380318-37380095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:3-224
               
               
               Cow position:chr5:37735608-37735384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:38848353-38848577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:40792065-40791844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:3-224
               
               
               Cow position:chr5:41411207-41411430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 38

               
               
               Conread position:3-224
               
               
               Cow position:chr5:41488902-41488678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:45179615-45179838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:46626045-46626268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:46650329-46650100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:3-224
               
               
               Cow position:chr5:46667306-46667082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:46676845-46676621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:46707869-46707648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr5:46735045-46735268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr5:47343105-47342882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 181

               
               
               Conread position:3-224
               
               
               Cow position:chr5:47471628-47471401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 182

               
               
               Conread position:3-224
               
               
               Cow position:chr5:48026500-48026277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr5:48574595-48574811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr5:49117119-49117343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:49521931-49521712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr5:51502116-51501892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:3-224
               
               
               Cow position:chr5:51684385-51684613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):89, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr5:51746450-51746232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr5:52605392-52605617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 137

               
               
               Conread position:3-224
               
               
               Cow position:chr5:52829554-52829776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr5:53075638-53075862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:54337134-54336910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:54785876-54786100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:54927687-54927911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:54930015-54930239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:54951890-54952114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:55631296-55631072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr5:55722761-55722537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:58245564-58245340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:3-224
               
               
               Cow position:chr5:58770640-58770862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:3-224
               
               
               Cow position:chr5:59146609-59146385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:62436355-62436131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:64845036-64845257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr5:71456814-71457038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr5:73485654-73485891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr5:76098798-76099022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr5:10772598-10772820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:3-226
               
               
               Cow position:chr5:10922077-10921851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr5:41603514-41603288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 218

               
               
               Conread position:3-227
               
               
               Cow position:chr5:32810793-32811021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr5:44275827-44275606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 154

               
               
               Conread position:3-273
               
               
               Cow position:chr5:39363104-39362831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:4-139
               
               
               Cow position:chr5:6219174-6219037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:4-180
               
               
               Cow position:chr5:42676474-42676299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:4-198
               
               
               Cow position:chr5:8529877-8529685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:4-209
               
               
               Cow position:chr5:34559376-34559172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 107

               
               
               Conread position:4-216
               
               
               Cow position:chr5:24643644-24643854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 30

               
               
               Conread position:4-224
               
               
               Cow position:chr5:1395231-1395450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 158

               
               
               Conread position:4-224
               
               
               Cow position:chr5:4434273-4434496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr5:27195831-27196052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:4-224
               
               
               Cow position:chr5:29742330-29742549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:4-224
               
               
               Cow position:chr5:46779746-46779524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr5:46816872-46817094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr5:47560330-47560553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr5:51293730-51293953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 108

               
               
               Conread position:4-224
               
               
               Cow position:chr5:72857105-72856882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:5-123
               
               
               Cow position:chr5:37384305-37384426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-125
               
               
               Cow position:chr5:29968838-29968715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-191
               
               
               Cow position:chr5:40357713-40357903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-215
               
               
               Cow position:chr5:32697563-32697785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:5-216
               
               
               Cow position:chr5:34669859-34670072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 167

               
               
               Conread position:5-224
               
               
               Cow position:chr5:6772796-6772576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 172

               
               
               Conread position:5-224
               
               
               Cow position:chr5:56442488-56442267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:6-197
               
               
               Cow position:chr5:41356614-41356802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:6-224
               
               
               Cow position:chr5:18250281-18250061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:7-224
               
               
               Cow position:chr5:24221223-24221005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):31, 105

               
               
               Conread position:7-224
               
               
               Cow position:chr5:28016284-28016056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:8-221
               
               
               Cow position:chr5:25901252-25901463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):88, 25

               
               
               Conread position:8-224
               
               
               Cow position:chr5:17027295-17027085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:14-221
               
               
               Cow position:chr5:59071822-59072033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:21-224
               
               
               Cow position:chr5:47696990-47697198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:22-224
               
               
               Cow position:chr5:31634646-31634446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:22-224
               
               
               Cow position:chr5:48805248-48805443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 137

               
               
               Conread position:22-226
               
               
               Cow position:chr5:45999963-46000166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):14, 65

               
               
               Conread position:23-215
               
               
               Cow position:chr5:21828029-21827837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:23-224
               
               
               Cow position:chr5:42744002-42743801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:23-224
               
               
               Cow position:chr5:43991494-43991290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:23-224
               
               
               Cow position:chr5:58004441-58004244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):16, 72

               
               
               Conread position:24-163
               
               
               Cow position:chr5:12325523-12325381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-210
               
               
               Cow position:chr5:1230017-1229828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 118

               
               
               Conread position:24-221
               
               
               Cow position:chr5:42283381-42283181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr5:2203180-2203383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr5:5924766-5924961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 157

               
               
               Conread position:24-224
               
               
               Cow position:chr5:37626070-37625867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr5:72046453-72046655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:25-183
               
               
               Cow position:chr5:23828982-23829137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:28-224
               
               
               Cow position:chr5:27691194-27690997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):10, 83

               
               
               Conread position:28-224
               
               
               Cow position:chr5:38738236-38738036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:34-221
               
               
               Cow position:chr5:35446417-35446607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):62, 76

               
               
               Conread position:35-224
               
               
               Cow position:chr5:18491601-18491414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:35-224
               
               
               Cow position:chr5:28571742-28571556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:37-224
               
               
               Cow position:chr5:48225380-48225570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 73

               
               
               Conread position:38-224
               
               
               Cow position:chr5:10299663-10299476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:38-224
               
               
               Cow position:chr5:13630299-13630486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr5:59083016-59083201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):67, 81

               
               
               Conread position:41-199
               
               
               Cow position:chr5:48056244-48056095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:44-204
               
               
               Cow position:chr5:69771252-69771089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:44-224
               
               
               Cow position:chr5:4388365-4388187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:44-224
               
               
               Cow position:chr5:65597614-65597439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:149
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):86, 49

               
               
               Conread position:45-224
               
               
               Cow position:chr5:41547818-41547999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):52, 117

               
               
               Conread position:48-224
               
               
               Cow position:chr5:12728975-12729152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:49-224
               
               
               Cow position:chr5:3544492-3544316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:53-224
               
               
               Cow position:chr5:23642038-23642204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:1-220
               
               
               Cow position:chr6:33508621-33508401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):5, 105

               
               
               Conread position:1-221
               
               
               Cow position:chr6:12388089-12388304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:1-224
               
               
               Cow position:chr6:10695094-10694869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:1-224
               
               
               Cow position:chr6:39957439-39957216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:2-224
               
               
               Cow position:chr6:20552871-20553094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:3-98
               
               
               Cow position:chr6:39092988-39092891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-113
               
               
               Cow position:chr6:61632504-61632391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-122
               
               
               Cow position:chr6:10266756-10266878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-122
               
               
               Cow position:chr6:42897558-42897436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-122
               
               
               Cow position:chr6:58036652-58036531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-123
               
               
               Cow position:chr6:39080288-39080165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-125
               
               
               Cow position:chr6:39897692-39897817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr6:1245550-1245677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr6:48872953-48873080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr6:52696955-52696810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-152
               
               
               Cow position:chr6:34017351-34017503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr6:8382310-8382156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:3-156
               
               
               Cow position:chr6:63714905-63715061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-157
               
               
               Cow position:chr6:57329649-57329492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr6:63040962-63041119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):93, 39

               
               
               Conread position:3-162
               
               
               Cow position:chr6:53461808-53461970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-166
               
               
               Cow position:chr6:17773357-17773191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr6:653426-653602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr6:45736497-45736670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:3-189
               
               
               Cow position:chr6:1109379-1109189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-195
               
               
               Cow position:chr6:5096437-5096630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-195
               
               
               Cow position:chr6:52557280-52557469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:3-199
               
               
               Cow position:chr6:3987685-3987884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-200
               
               
               Cow position:chr6:48882118-48881918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr6:11638835-11639036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:3-201
               
               
               Cow position:chr6:35704146-35704344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):33, 149

               
               
               Conread position:3-202
               
               
               Cow position:chr6:20267945-20268143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):93, 149

               
               
               Conread position:3-204
               
               
               Cow position:chr6:2618195-2618399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr6:7448866-7448658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-209
               
               
               Cow position:chr6:42267099-42266895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:3-210
               
               
               Cow position:chr6:55361424-55361634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-214
               
               
               Cow position:chr6:30316574-30316784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-214
               
               
               Cow position:chr6:45901621-45901835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr6:42988434-42988646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:3-216
               
               
               Cow position:chr6:10612201-10611982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:3-216
               
               
               Cow position:chr6:25374737-25374953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr6:40251428-40251642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-216
               
               
               Cow position:chr6:45666559-45666772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):33, 129

               
               
               Conread position:3-217
               
               
               Cow position:chr6:28102499-28102714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):38, 180

               
               
               Conread position:3-217
               
               
               Cow position:chr6:46225591-46225808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-218
               
               
               Cow position:chr6:1834366-1834148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-219
               
               
               Cow position:chr6:2366896-2367109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:3-219
               
               
               Cow position:chr6:10570518-10570735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:3-219
               
               
               Cow position:chr6:65874913-65875130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):42, 188

               
               
               Conread position:3-220
               
               
               Cow position:chr6:2111029-2111248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr6:18987501-18987291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:3-220
               
               
               Cow position:chr6:43779063-43778857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:3-220
               
               
               Cow position:chr6:44146577-44146796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-220
               
               
               Cow position:chr6:64719687-64719469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr6:4467994-4467787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 138

               
               
               Conread position:3-221
               
               
               Cow position:chr6:6182349-6182558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:3-221
               
               
               Cow position:chr6:12099875-12099668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-221
               
               
               Cow position:chr6:15137802-15138023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr6:16418311-16418532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr6:16593319-16593110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):93, 173

               
               
               Conread position:3-221
               
               
               Cow position:chr6:27173212-27172979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr6:28065361-28065141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr6:28184948-28185169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr6:39136869-39136654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:3-221
               
               
               Cow position:chr6:39331162-39331381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 186

               
               
               Conread position:3-221
               
               
               Cow position:chr6:39999088-39999307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-221
               
               
               Cow position:chr6:44510457-44510240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):23, 134

               
               
               Conread position:3-221
               
               
               Cow position:chr6:47149601-47149820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:3-221
               
               
               Cow position:chr6:52977797-52978008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:3-221
               
               
               Cow position:chr6:53537447-53537226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr6:53935267-53935483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-221
               
               
               Cow position:chr6:67553603-67553382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:126764-126985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:3-224
               
               
               Cow position:chr6:327991-328216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:451892-452116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:478921-478697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:508150-508375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:529522-529742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:3-224
               
               
               Cow position:chr6:706369-706145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:888928-888704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:1402188-1402410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr6:1406776-1406998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):32, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr6:1537076-1536852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:1796996-1796774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr6:2089646-2089423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):31, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr6:2186411-2186635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:2875663-2875884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:3-224
               
               
               Cow position:chr6:3152586-3152365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:3-224
               
               
               Cow position:chr6:3272111-3272334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 181

               
               
               Conread position:3-224
               
               
               Cow position:chr6:3485048-3485272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:3886134-3886358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:4274440-4274217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:5946404-5946628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:6034427-6034650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:6119623-6119839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:3-224
               
               
               Cow position:chr6:6459482-6459261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr6:6471565-6471786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):33, 69

               
               
               Conread position:3-224
               
               
               Cow position:chr6:6557332-6557108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:6944576-6944794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:3-224
               
               
               Cow position:chr6:7105163-7105381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:3-224
               
               
               Cow position:chr6:7467280-7467503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:3-224
               
               
               Cow position:chr6:8205558-8205335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr6:8754084-8754307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 178

               
               
               Conread position:3-224
               
               
               Cow position:chr6:9234882-9234659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):36, 212

               
               
               Conread position:3-224
               
               
               Cow position:chr6:9737887-9738107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-224
               
               
               Cow position:chr6:10044586-10044362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:10236562-10236343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:3-224
               
               
               Cow position:chr6:10598372-10598150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:3-224
               
               
               Cow position:chr6:10681355-10681143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr6:11289096-11289319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 145

               
               
               Conread position:3-224
               
               
               Cow position:chr6:11353802-11354031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):29, 166

               
               
               Conread position:3-224
               
               
               Cow position:chr6:11401691-11401467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:11453496-11453721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:11721837-11722061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:12971767-12971543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:12997790-12997568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:3-224
               
               
               Cow position:chr6:13308027-13308249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 153

               
               
               Conread position:3-224
               
               
               Cow position:chr6:15181528-15181302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:15275869-15276093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:15783621-15783833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):37, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr6:16049922-16050145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:3-224
               
               
               Cow position:chr6:16410426-16410205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:3-224
               
               
               Cow position:chr6:16766471-16766693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:3-224
               
               
               Cow position:chr6:17049744-17049520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:17111795-17112018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-224
               
               
               Cow position:chr6:17149796-17150027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:17386894-17386670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:17556302-17556523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr6:18803688-18803912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:19044577-19044361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr6:19103537-19103761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:21163674-21163450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:21588355-21588131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:21712077-21711853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:21857001-21857218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-224
               
               
               Cow position:chr6:22043638-22043861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:22737335-22737559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:24242658-24242436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr6:24623772-24623991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr6:25179814-25180035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 134

               
               
               Conread position:3-224
               
               
               Cow position:chr6:26324829-26325052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr6:27094216-27094439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:3-224
               
               
               Cow position:chr6:27475777-27475558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:3-224
               
               
               Cow position:chr6:28001025-28001244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 178

               
               
               Conread position:3-224
               
               
               Cow position:chr6:28481699-28481478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 134

               
               
               Conread position:3-224
               
               
               Cow position:chr6:29484348-29484129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr6:29689229-29689012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:3-224
               
               
               Cow position:chr6:30269531-30269756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:31912804-31913028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:31941238-31941014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:32420318-32420097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr6:33809063-33809287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:33949789-33950013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):35, 182

               
               
               Conread position:3-224
               
               
               Cow position:chr6:34494046-34493822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:34504150-34504374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:34843342-34843566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:35416602-35416825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr6:35873361-35873582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:3-224
               
               
               Cow position:chr6:36230155-36230379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:36531645-36531420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:40550329-40550553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:41231858-41231635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:43621102-43620878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:43797527-43797754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:44017457-44017681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:45479717-45479941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:45937650-45937438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:3-224
               
               
               Cow position:chr6:45975870-45975646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:46283728-46283949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr6:46633489-46633266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:3-224
               
               
               Cow position:chr6:46948187-46947965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:3-224
               
               
               Cow position:chr6:47039840-47040062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:3-224
               
               
               Cow position:chr6:48947286-48947509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:3-224
               
               
               Cow position:chr6:50485413-50485637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:51150313-51150089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:51717925-51717702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:51868358-51868136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr6:52065750-52065974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:52900317-52900093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:3-224
               
               
               Cow position:chr6:53543112-53543336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:53672704-53672482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr6:55593441-55593217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:55903460-55903236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:56451724-56451948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:56926104-56925880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:57521546-57521322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:57857141-57856917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:58031148-58030924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:58595038-58595259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 78

               
               
               Conread position:3-224
               
               
               Cow position:chr6:60332715-60332490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:60379534-60379310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:61829600-61829376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:62665146-62664922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:63177414-63177190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr6:65819211-65819433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr6:65868155-65867931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr6:67448555-67448779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr6:51733452-51733227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 204

               
               
               Conread position:3-253
               
               
               Cow position:chr6:18912363-18912616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:4-203
               
               
               Cow position:chr6:27887281-27887080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 134

               
               
               Conread position:4-215
               
               
               Cow position:chr6:54472276-54472489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:4-219
               
               
               Cow position:chr6:50637638-50637433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:4-224
               
               
               Cow position:chr6:9839767-9839988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:4-224
               
               
               Cow position:chr6:20451329-20451107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:4-224
               
               
               Cow position:chr6:21832291-21832513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 184

               
               
               Conread position:4-224
               
               
               Cow position:chr6:27526593-27526816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr6:28172277-28172058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:4-224
               
               
               Cow position:chr6:34405671-34405448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr6:38438976-38438753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:4-224
               
               
               Cow position:chr6:41677298-41677081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:4-224
               
               
               Cow position:chr6:59619446-59619223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr6:60876666-60876443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-226
               
               
               Cow position:chr6:68030549-68030324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:5-113
               
               
               Cow position:chr6:48825860-48825971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-195
               
               
               Cow position:chr6:20581407-20581600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-213
               
               
               Cow position:chr6:53742289-53742085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:5-215
               
               
               Cow position:chr6:7216164-7215951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:5-218
               
               
               Cow position:chr6:33466326-33466111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:5-220
               
               
               Cow position:chr6:12926942-12926724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:5-220
               
               
               Cow position:chr6:50571560-50571342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:5-223
               
               
               Cow position:chr6:7176199-7176416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:5-224
               
               
               Cow position:chr6:11869566-11869787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr6:14897549-14897327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr6:23568224-23568446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr6:27939403-27939181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr6:49761833-49761617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:5-224
               
               
               Cow position:chr6:55474675-55474453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:5-224
               
               
               Cow position:chr6:55538902-55539124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr6:65848000-65848223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:5-224
               
               
               Cow position:chr6:65909696-65909471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):34, 152

               
               
               Conread position:5-226
               
               
               Cow position:chr6:51674135-51673919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:6-218
               
               
               Cow position:chr6:57383784-57383569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:6-224
               
               
               Cow position:chr6:53810949-53810737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:7-221
               
               
               Cow position:chr6:3574153-3573943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:8-221
               
               
               Cow position:chr6:27151075-27151291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:9-204
               
               
               Cow position:chr6:24631886-24632078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):87, 24

               
               
               Conread position:10-224
               
               
               Cow position:chr6:25357503-25357714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:11-224
               
               
               Cow position:chr6:24126232-24126445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):25, 153

               
               
               Conread position:14-215
               
               
               Cow position:chr6:32018757-32018959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:18-179
               
               
               Cow position:chr6:65860730-65860568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):21, 121

               
               
               Conread position:18-221
               
               
               Cow position:chr6:34075221-34075018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 158

               
               
               Conread position:22-224
               
               
               Cow position:chr6:18962993-18963195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 149

               
               
               Conread position:22-224
               
               
               Cow position:chr6:41192677-41192473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:23-224
               
               
               Cow position:chr6:1498549-1498345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:23-226
               
               
               Cow position:chr6:6595773-6595568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:24-224
               
               
               Cow position:chr6:1507160-1507363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr6:66188450-66188653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:26-198
               
               
               Cow position:chr6:47171408-47171241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:37-227
               
               
               Cow position:chr6:33984150-33983960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 73

               
               
               Conread position:38-167
               
               
               Cow position:chr6:8950926-8951056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:41-221
               
               
               Cow position:chr6:58016680-58016498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:152
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:44-168
               
               
               Cow position:chr6:3445713-3445838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:53-224
               
               
               Cow position:chr6:25790382-25790552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:225-511
               
               
               Cow position:chr6:6541939-6541661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:226-354
               
               
               Cow position:chr6:59479104-59479232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):108, 100

               
               
               Conread position:1-151
               
               
               Cow position:chr7:6267645-6267493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:1-176
               
               
               Cow position:chr7:61126502-61126324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1-196
               
               
               Cow position:chr7:51873013-51873214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1-202
               
               
               Cow position:chr7:60757748-60757951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):5, 177

               
               
               Conread position:1-216
               
               
               Cow position:chr7:63947651-63947869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):5, 184

               
               
               Conread position:1-224
               
               
               Cow position:chr7:18304774-18304989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):38, 144

               
               
               Conread position:1-224
               
               
               Cow position:chr7:19467031-19467258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-224
               
               
               Cow position:chr7:40709218-40708991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):5, 164

               
               
               Conread position:1-224
               
               
               Cow position:chr7:49647575-49647349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 139

               
               
               Conread position:2-219
               
               
               Cow position:chr7:29363542-29363748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:2-224
               
               
               Cow position:chr7:27992574-27992792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 172

               
               
               Conread position:3-114
               
               
               Cow position:chr7:48548687-48548800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-122
               
               
               Cow position:chr7:68314405-68314284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:3-127
               
               
               Cow position:chr7:62766399-62766272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-129
               
               
               Cow position:chr7:42334589-42334461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:3-144
               
               
               Cow position:chr7:25101063-25100924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:3-145
               
               
               Cow position:chr7:54547900-54547756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 131

               
               
               Conread position:3-153
               
               
               Cow position:chr7:1861409-1861256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr7:12773370-12773216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr7:27456350-27456503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-163
               
               
               Cow position:chr7:13039144-13039307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-163
               
               
               Cow position:chr7:41405297-41405460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-169
               
               
               Cow position:chr7:16845561-16845394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 31

               
               
               Conread position:3-178
               
               
               Cow position:chr7:18865455-18865277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr7:20536542-20536365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:3-179
               
               
               Cow position:chr7:32283144-32282974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):36, 114

               
               
               Conread position:3-182
               
               
               Cow position:chr7:259325-259503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-187
               
               
               Cow position:chr7:61762549-61762363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:3-189
               
               
               Cow position:chr7:23554426-23554240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr7:23277034-23277225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:3-194
               
               
               Cow position:chr7:58718578-58718379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr7:52044904-52044711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 159

               
               
               Conread position:3-200
               
               
               Cow position:chr7:39850609-39850409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr7:28621721-28621520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-202
               
               
               Cow position:chr7:51194157-51193951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:3-203
               
               
               Cow position:chr7:10450802-10451002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:3-203
               
               
               Cow position:chr7:41872863-41873065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:3-209
               
               
               Cow position:chr7:46898914-46899123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-210
               
               
               Cow position:chr7:34973791-34973584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 48

               
               
               Conread position:3-210
               
               
               Cow position:chr7:57666884-57667092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-211
               
               
               Cow position:chr7:67432305-67432098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):38, 7

               
               
               Conread position:3-213
               
               
               Cow position:chr7:69018710-69018502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-215
               
               
               Cow position:chr7:41727101-41726886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-216
               
               
               Cow position:chr7:27516307-27516102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 136

               
               
               Conread position:3-216
               
               
               Cow position:chr7:38061240-38061446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 156

               
               
               Conread position:3-216
               
               
               Cow position:chr7:55688518-55688731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-217
               
               
               Cow position:chr7:24873833-24874053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr7:39095061-39095265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:3-217
               
               
               Cow position:chr7:59659958-59659741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 197

               
               
               Conread position:3-219
               
               
               Cow position:chr7:194452-194660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-219
               
               
               Cow position:chr7:18499534-18499753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-219
               
               
               Cow position:chr7:19043758-19043977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-219
               
               
               Cow position:chr7:29473896-29473687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:3-219
               
               
               Cow position:chr7:48242661-48242444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-220
               
               
               Cow position:chr7:20779361-20779146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:3-220
               
               
               Cow position:chr7:35743018-35742801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:3-220
               
               
               Cow position:chr7:39401193-39400973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-220
               
               
               Cow position:chr7:67872222-67872005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 139

               
               
               Conread position:3-221
               
               
               Cow position:chr7:12483662-12483445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-221
               
               
               Cow position:chr7:19799000-19799221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr7:26455781-26456001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:3-221
               
               
               Cow position:chr7:28162536-28162317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 172

               
               
               Conread position:3-221
               
               
               Cow position:chr7:30664484-30664265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:3-221
               
               
               Cow position:chr7:34152401-34152182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr7:46187483-46187263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-221
               
               
               Cow position:chr7:52801146-52801367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr7:54509748-54509970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):39, 110

               
               
               Conread position:3-221
               
               
               Cow position:chr7:57538598-57538813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:3-221
               
               
               Cow position:chr7:58196703-58196924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr7:69065723-69065502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr7:12449-12673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:54687-54911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:442800-443021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):93, 212

               
               
               Conread position:3-224
               
               
               Cow position:chr7:548237-548013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:759395-759621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:845384-845160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:899793-900015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr7:982133-982356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:1330955-1331175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr7:1367232-1367456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:1441373-1441597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:3128766-3128543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:3-224
               
               
               Cow position:chr7:3297217-3297441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:3634283-3634507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:5258720-5258943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):37, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr7:5304523-5304747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:5404319-5404538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr7:5849848-5850072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:7249303-7249527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:7261977-7261757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr7:7278019-7277793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:10070476-10070698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr7:11440368-11440591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr7:11460674-11460898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:13238143-13238368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:13530443-13530667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:13806185-13806409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:13854679-13854458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:3-224
               
               
               Cow position:chr7:14081733-14081955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-224
               
               
               Cow position:chr7:14131571-14131347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:14135352-14135575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:14211963-14212191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 153

               
               
               Conread position:3-224
               
               
               Cow position:chr7:14539091-14538868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:3-224
               
               
               Cow position:chr7:16934767-16934542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:18256475-18256699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:18444320-18444543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr7:18871544-18871769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:3-224
               
               
               Cow position:chr7:19096834-19097057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:19926399-19926624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr7:21124207-21124431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:21323724-21323500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:22598478-22598254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:23130264-23130040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):37, 136

               
               
               Conread position:3-224
               
               
               Cow position:chr7:23457553-23457774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr7:24423101-24422878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 144

               
               
               Conread position:3-224
               
               
               Cow position:chr7:24741649-24741875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr7:24797920-24798144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:24805030-24805254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:3-224
               
               
               Cow position:chr7:24827290-24827065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:25230492-25230270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr7:25443229-25443011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr7:26884912-26884699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:3-224
               
               
               Cow position:chr7:27098808-27099032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:27142455-27142233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-224
               
               
               Cow position:chr7:27394588-27394368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:3-224
               
               
               Cow position:chr7:27572705-27572484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr7:27573280-27573059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr7:27713045-27712825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr7:27790745-27790535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:3-224
               
               
               Cow position:chr7:29382372-29382148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:30172786-30173001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:3-224
               
               
               Cow position:chr7:31877932-31877714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:3-224
               
               
               Cow position:chr7:33308781-33309005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr7:33334911-33334687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:34082892-34082667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 203

               
               
               Conread position:3-224
               
               
               Cow position:chr7:34229269-34229493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:34489369-34489145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:34819520-34819297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-224
               
               
               Cow position:chr7:35428318-35428535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr7:37190129-37189905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:39795329-39795105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:39902805-39902584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr7:40318162-40317938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:41474820-41474591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:42431094-42430875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:3-224
               
               
               Cow position:chr7:42594086-42594304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr7:42873598-42873383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:43110308-43110529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-224
               
               
               Cow position:chr7:44745388-44745612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:45765863-45766087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:45928708-45928932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:3-224
               
               
               Cow position:chr7:45945393-45945616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:46195376-46195151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:46749444-46749224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 144

               
               
               Conread position:3-224
               
               
               Cow position:chr7:47190278-47190504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:48011558-48011336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr7:48814581-48814357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr7:48860275-48860499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:3-224
               
               
               Cow position:chr7:49070170-49070394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 206

               
               
               Conread position:3-224
               
               
               Cow position:chr7:49603109-49603332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr7:49784264-49784478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:50535824-50536048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:50961540-50961315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:51019045-51018823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr7:51675394-51675173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:3-224
               
               
               Cow position:chr7:53037815-53038038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 136

               
               
               Conread position:3-224
               
               
               Cow position:chr7:53362734-53362954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr7:54186946-54187171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 214

               
               
               Conread position:3-224
               
               
               Cow position:chr7:54482814-54483036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr7:54807887-54808110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:54822959-54823183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:55041974-55041751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 181

               
               
               Conread position:3-224
               
               
               Cow position:chr7:55534457-55534681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:56887548-56887772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:57161271-57161491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:3-224
               
               
               Cow position:chr7:57910828-57910604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:58302712-58302935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:3-224
               
               
               Cow position:chr7:58335560-58335780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chr7:59437228-59437010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr7:60279455-60279681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:60726991-60727215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:3-224
               
               
               Cow position:chr7:60741479-60741701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr7:61576672-61576888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 181

               
               
               Conread position:3-224
               
               
               Cow position:chr7:61824592-61824815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):30, 106

               
               
               Conread position:3-224
               
               
               Cow position:chr7:62394243-62394023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:63389455-63389231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:64012888-64012664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:64238598-64238821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:3-224
               
               
               Cow position:chr7:64355480-64355253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):74, 15

               
               
               Conread position:3-224
               
               
               Cow position:chr7:65326292-65326498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:3-224
               
               
               Cow position:chr7:65712109-65711885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:65819256-65819476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 156

               
               
               Conread position:3-224
               
               
               Cow position:chr7:65870038-65870258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:3-224
               
               
               Cow position:chr7:66908705-66908482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:67802791-67802567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr7:42296840-42297061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-226
               
               
               Cow position:chr7:49743582-49743360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:3-226
               
               
               Cow position:chr7:66224217-66224440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:3-227
               
               
               Cow position:chr7:8140620-8140847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr7:59774772-59774547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 153

               
               
               Conread position:3-227
               
               
               Cow position:chr7:61832032-61832258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 176

               
               
               Conread position:4-120
               
               
               Cow position:chr7:48274763-48274882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-139
               
               
               Cow position:chr7:57209382-57209521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-210
               
               
               Cow position:chr7:12659755-12659960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:4-217
               
               
               Cow position:chr7:64237072-64237287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:4-221
               
               
               Cow position:chr7:65556956-65557176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr7:536395-536616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:4-224
               
               
               Cow position:chr7:10604632-10604859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr7:20150267-20150490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr7:21231558-21231778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 146

               
               
               Conread position:4-224
               
               
               Cow position:chr7:21990104-21989873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr7:22792321-22792099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:4-224
               
               
               Cow position:chr7:27552468-27552688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:4-224
               
               
               Cow position:chr7:36128227-36128005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 180

               
               
               Conread position:4-224
               
               
               Cow position:chr7:36343322-36343544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 180

               
               
               Conread position:4-224
               
               
               Cow position:chr7:40203456-40203233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr7:41463495-41463272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr7:52762070-52762293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr7:53070582-53070366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:4-224
               
               
               Cow position:chr7:62991178-62990956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 161

               
               
               Conread position:4-224
               
               
               Cow position:chr7:64353427-64353207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 161

               
               
               Conread position:5-193
               
               
               Cow position:chr7:19882039-19882230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:5-203
               
               
               Cow position:chr7:58614029-58613831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:5-224
               
               
               Cow position:chr7:11420119-11420341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr7:19398738-19398957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 61

               
               
               Conread position:5-224
               
               
               Cow position:chr7:21147892-21147674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):33, 185

               
               
               Conread position:5-224
               
               
               Cow position:chr7:34548052-34547831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 210

               
               
               Conread position:5-224
               
               
               Cow position:chr7:65496260-65496479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:5-226
               
               
               Cow position:chr7:3158749-3158529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 66

               
               
               Conread position:6-224
               
               
               Cow position:chr7:47909861-47910081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:7-224
               
               
               Cow position:chr7:62952784-62952569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 48

               
               
               Conread position:8-224
               
               
               Cow position:chr7:8741825-8742038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 54

               
               
               Conread position:9-219
               
               
               Cow position:chr7:59687439-59687238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:10-224
               
               
               Cow position:chr7:1600282-1600513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:11-158
               
               
               Cow position:chr7:41255805-41255955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:18-218
               
               
               Cow position:chr7:998638-998438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:18-222
               
               
               Cow position:chr7:22879479-22879273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):21, 84

               
               
               Conread position:19-199
               
               
               Cow position:chr7:41444462-41444286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:19-220
               
               
               Cow position:chr7:20167872-20167673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:19-221
               
               
               Cow position:chr7:59712686-59712483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:21-224
               
               
               Cow position:chr7:59141657-59141453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:22-199
               
               
               Cow position:chr7:59986028-59985848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:22-209
               
               
               Cow position:chr7:30415234-30415046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:22-221
               
               
               Cow position:chr7:34413089-34413293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:22-224
               
               
               Cow position:chr7:43281707-43281508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):16, 161

               
               
               Conread position:22-224
               
               
               Cow position:chr7:44590627-44590832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:23-221
               
               
               Cow position:chr7:18308238-18308435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):12, 153

               
               
               Conread position:23-221
               
               
               Cow position:chr7:62732417-62732216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:23-224
               
               
               Cow position:chr7:27995136-27995335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:24-224
               
               
               Cow position:chr7:26837851-26837658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:24-224
               
               
               Cow position:chr7:31259516-31259719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:26-224
               
               
               Cow position:chr7:60356688-60356887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:28-189
               
               
               Cow position:chr7:19457186-19457348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):68, 82

               
               
               Conread position:35-221
               
               
               Cow position:chr7:64330100-64329915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):61, 38

               
               
               Conread position:35-224
               
               
               Cow position:chr7:58921576-58921391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:37-221
               
               
               Cow position:chr7:24955651-24955470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:39-224
               
               
               Cow position:chr7:19949451-19949636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):57, 71

               
               
               Conread position:39-224
               
               
               Cow position:chr7:63135268-63135084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 71

               
               
               Conread position:40-224
               
               
               Cow position:chr7:26196613-26196793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):146, 60

               
               
               Conread position:41-224
               
               
               Cow position:chr7:29011403-29011584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 69

               
               
               Conread position:41-224
               
               
               Cow position:chr7:33392306-33392120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 69

               
               
               Conread position:43-224
               
               
               Cow position:chr7:38400268-38400089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:225-534
               
               
               Cow position:chr7:48632635-48632326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 54

               
               
               Conread position:225-535
               
               
               Cow position:chr7:27538094-27538409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:226-535
               
               
               Cow position:chr7:41486566-41486259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 274

               
               
               Conread position:245-393
               
               
               Cow position:chr7:3152708-3152560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr8:53252495-53252702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:1-221
               
               
               Cow position:chr8:12661530-12661752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:1-224
               
               
               Cow position:chr8:615812-616031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):5, 19

               
               
               Conread position:1-224
               
               
               Cow position:chr8:44703461-44703240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:2-145
               
               
               Cow position:chr8:17315242-17315096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 136

               
               
               Conread position:2-224
               
               
               Cow position:chr8:1500304-1500528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):37, 121

               
               
               Conread position:2-224
               
               
               Cow position:chr8:51446509-51446734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-107
               
               
               Cow position:chr8:48198588-48198481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-114
               
               
               Cow position:chr8:41267359-41267246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:3-120
               
               
               Cow position:chr8:45246185-45246303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:3-122
               
               
               Cow position:chr8:1508687-1508809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-125
               
               
               Cow position:chr8:16732959-16733084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-126
               
               
               Cow position:chr8:7682381-7682507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr8:38394092-38393965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr8:53120491-53120618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-136
               
               
               Cow position:chr8:7276363-7276227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-142
               
               
               Cow position:chr8:25065567-25065425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-143
               
               
               Cow position:chr8:46480680-46480823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-148
               
               
               Cow position:chr8:52862625-52862482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:3-152
               
               
               Cow position:chr8:820980-821130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 144

               
               
               Conread position:3-154
               
               
               Cow position:chr8:12452726-12452573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:3-154
               
               
               Cow position:chr8:36333002-36333156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr8:7051202-7051357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr8:55358584-55358429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-161
               
               
               Cow position:chr8:46645274-46645435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-167
               
               
               Cow position:chr8:8667178-8667342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:3-167
               
               
               Cow position:chr8:51219524-51219353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-174
               
               
               Cow position:chr8:22997562-22997390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:3-174
               
               
               Cow position:chr8:28880046-28879872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr8:11836158-11835980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-178
               
               
               Cow position:chr8:17912775-17912953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-179
               
               
               Cow position:chr8:47751497-47751676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-183
               
               
               Cow position:chr8:7598144-7597959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr8:4038724-4038538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr8:42159274-42159087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-187
               
               
               Cow position:chr8:9131758-9131942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-189
               
               
               Cow position:chr8:9963411-9963597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:3-197
               
               
               Cow position:chr8:12539428-12539620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-199
               
               
               Cow position:chr8:4310012-4309809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):33, 121

               
               
               Conread position:3-202
               
               
               Cow position:chr8:2889345-2889143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr8:42009589-42009385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-205
               
               
               Cow position:chr8:50800176-50800381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-207
               
               
               Cow position:chr8:32607737-32607945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr8:50682711-50682919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-209
               
               
               Cow position:chr8:36632802-36633009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:3-210
               
               
               Cow position:chr8:46961666-46961456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-214
               
               
               Cow position:chr8:12795034-12794821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:3-216
               
               
               Cow position:chr8:795560-795772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-216
               
               
               Cow position:chr8:6725306-6725520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:3-216
               
               
               Cow position:chr8:36309389-36309605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:3-216
               
               
               Cow position:chr8:49284426-49284642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr8:18991651-18991868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr8:49600677-49600893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 111

               
               
               Conread position:3-217
               
               
               Cow position:chr8:49620085-49619870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:3-218
               
               
               Cow position:chr8:38561798-38562016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-219
               
               
               Cow position:chr8:25342838-25342625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:3-220
               
               
               Cow position:chr8:4727982-4728202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr8:7101698-7101904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr8:8918071-8918294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):19, 66

               
               
               Conread position:3-220
               
               
               Cow position:chr8:20891495-20891284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:3-220
               
               
               Cow position:chr8:31886126-31885906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:3-220
               
               
               Cow position:chr8:51360615-51360401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:3-221
               
               
               Cow position:chr8:3788067-3787851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:3-221
               
               
               Cow position:chr8:4923549-4923327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:3-221
               
               
               Cow position:chr8:11226605-11226823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):93, 107

               
               
               Conread position:3-221
               
               
               Cow position:chr8:11373011-11373224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 184

               
               
               Conread position:3-221
               
               
               Cow position:chr8:11768335-11768112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr8:14588225-14588446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr8:21090684-21090905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr8:24868573-24868785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-221
               
               
               Cow position:chr8:26625062-26624839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr8:37534665-37534444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):37, 29

               
               
               Conread position:3-221
               
               
               Cow position:chr8:53429037-53428818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 187

               
               
               Conread position:3-224
               
               
               Cow position:chr8:45801-45577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:982908-982684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr8:1111105-1110883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr8:1150646-1150870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:1322666-1322442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:3-224
               
               
               Cow position:chr8:1345325-1345548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:3-224
               
               
               Cow position:chr8:1583121-1582897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:2166878-2167102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:2748619-2748409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr8:2823512-2823734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:3-224
               
               
               Cow position:chr8:3853249-3853467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr8:4614984-4615208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:4690047-4689823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:5020653-5020429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:5195759-5195535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:5243797-5244019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:3-224
               
               
               Cow position:chr8:6061832-6062055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:3-224
               
               
               Cow position:chr8:6202641-6202864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr8:6330339-6330114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 69

               
               
               Conread position:3-224
               
               
               Cow position:chr8:6464502-6464726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:7167604-7167380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:8016425-8016643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr8:8382045-8381821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:9687971-9687748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:9739168-9738944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:10739929-10740153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:10751995-10751771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:11118311-11118528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:3-224
               
               
               Cow position:chr8:11240958-11240734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:11805423-11805202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr8:12057216-12056989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:3-224
               
               
               Cow position:chr8:12287582-12287358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:12445752-12445975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 212

               
               
               Conread position:3-224
               
               
               Cow position:chr8:13373766-13373543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-224
               
               
               Cow position:chr8:13931294-13931514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr8:15224445-15224225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr8:16940329-16940546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:3-224
               
               
               Cow position:chr8:17200368-17200590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:3-224
               
               
               Cow position:chr8:18056928-18056704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr8:18402674-18402905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:18568255-18568478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr8:18657089-18657311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr8:19052931-19052707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:19334235-19334010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:19545989-19545767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:3-224
               
               
               Cow position:chr8:19893665-19893440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:21043239-21043015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:21118131-21118351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr8:21219361-21219147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:21225088-21224871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr8:21252885-21252663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:3-224
               
               
               Cow position:chr8:21789182-21789406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:22030761-22030537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:22376542-22376765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:3-224
               
               
               Cow position:chr8:22531579-22531803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:25414259-25414034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:25534775-25534560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:3-224
               
               
               Cow position:chr8:25613919-25613695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:25671938-25671715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr8:25772995-25773218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr8:26013915-26013695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr8:26039263-26039038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:26394278-26394054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:26607125-26606904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr8:27942523-27942747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:28230276-28230501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:3-224
               
               
               Cow position:chr8:29031043-29031258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr8:31253011-31252777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:31976760-31976984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:32314981-32315205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:33045356-33045580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:33585385-33585164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 170

               
               
               Conread position:3-224
               
               
               Cow position:chr8:33592009-33591782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:3-224
               
               
               Cow position:chr8:33898273-33898496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 167

               
               
               Conread position:3-224
               
               
               Cow position:chr8:34400181-34399965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr8:35128148-35128372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:35211954-35212178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):36, 178

               
               
               Conread position:3-224
               
               
               Cow position:chr8:37933958-37933736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr8:38043495-38043707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:3-224
               
               
               Cow position:chr8:38089615-38089395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-224
               
               
               Cow position:chr8:39141291-39141067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:39165757-39165980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-224
               
               
               Cow position:chr8:39192263-39192487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:39740043-39740267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:41641596-41641814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 129

               
               
               Conread position:3-224
               
               
               Cow position:chr8:41659165-41659387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chr8:42317622-42317845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 211

               
               
               Conread position:3-224
               
               
               Cow position:chr8:42427946-42428170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:42748694-42748470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:44113726-44113502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:45070576-45070353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr8:45141802-45142022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:3-224
               
               
               Cow position:chr8:46058127-46058342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr8:46951316-46951100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:3-224
               
               
               Cow position:chr8:47466731-47466958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:47666915-47667139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:47889455-47889231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):28, 120

               
               
               Conread position:3-224
               
               
               Cow position:chr8:47996072-47996289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:3-224
               
               
               Cow position:chr8:49964276-49964500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:50283571-50283795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:50430496-50430719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr8:50927458-50927681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:3-224
               
               
               Cow position:chr8:51603239-51603462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr8:53004246-53004472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:3-224
               
               
               Cow position:chr8:53320165-53319947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 141

               
               
               Conread position:3-224
               
               
               Cow position:chr8:53821720-53821496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:53838578-53838355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:3-224
               
               
               Cow position:chr8:54015462-54015238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:54479169-54478945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:55270881-55271105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:60064743-60064523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chr8:60067524-60067301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chr8:60267014-60266806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 157

               
               
               Conread position:3-224
               
               
               Cow position:chr8:60769756-60769980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr8:61197624-61197848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-225
               
               
               Cow position:chr8:20674931-20675153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-225
               
               
               Cow position:chr8:49415892-49415669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:3-226
               
               
               Cow position:chr8:43902811-43902588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 136

               
               
               Conread position:3-227
               
               
               Cow position:chr8:49220827-49220606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:3-228
               
               
               Cow position:chr8:1935956-1935733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-469
               
               
               Cow position:chr8:30489252-30489720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 155

               
               
               Conread position:4-178
               
               
               Cow position:chr8:15687404-15687579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 134

               
               
               Conread position:4-189
               
               
               Cow position:chr8:21212024-21211838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):32, 126

               
               
               Conread position:4-200
               
               
               Cow position:chr8:24872626-24872809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:4-221
               
               
               Cow position:chr8:1998823-1998609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:4-224
               
               
               Cow position:chr8:3333016-3333239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr8:8387186-8386963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:4-224
               
               
               Cow position:chr8:8652710-8652933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr8:35472948-35472725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr8:35529325-35529102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr8:38597005-38597229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:4-224
               
               
               Cow position:chr8:40584714-40584491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr8:45688197-45688417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:5-127
               
               
               Cow position:chr8:29011846-29011721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-221
               
               
               Cow position:chr8:4273915-4273700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):31, 97

               
               
               Conread position:5-224
               
               
               Cow position:chr8:23119837-23119611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr8:24193182-24192961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:5-224
               
               
               Cow position:chr8:45131091-45131312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr8:49841669-49841447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr8:51674792-51674570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:6-221
               
               
               Cow position:chr8:49361370-49361163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:6-224
               
               
               Cow position:chr8:50315903-50316123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:8-224
               
               
               Cow position:chr8:44856157-44855940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 130

               
               
               Conread position:18-224
               
               
               Cow position:chr8:29920325-29920531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):21, 157

               
               
               Conread position:22-224
               
               
               Cow position:chr8:41650358-41650155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):14, 194

               
               
               Conread position:23-216
               
               
               Cow position:chr8:21728380-21728185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 65

               
               
               Conread position:23-226
               
               
               Cow position:chr8:51702188-51701984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:24-224
               
               
               Cow position:chr8:8398517-8398720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr8:30158309-30158105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr8:45792103-45792306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr8:49720296-49720094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:27-214
               
               
               Cow position:chr8:8319461-8319273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:33-224
               
               
               Cow position:chr8:216552-216745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):118, 60

               
               
               Conread position:40-224
               
               
               Cow position:chr8:1108034-1108210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr8:47658722-47658908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr8:59258393-59258578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:152
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:41-179
               
               
               Cow position:chr8:4745701-4745841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:41-194
               
               
               Cow position:chr8:45354891-45355038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:43-222
               
               
               Cow position:chr8:8160665-8160489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 137

               
               
               Conread position:43-224
               
               
               Cow position:chr8:12311282-12311461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):6, 133

               
               
               Conread position:43-224
               
               
               Cow position:chr8:41950784-41950604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):53, 35

               
               
               Conread position:44-224
               
               
               Cow position:chr8:27288132-27288309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):5, 21

               
               
               Conread position:44-224
               
               
               Cow position:chr8:50936278-50936098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:3-106
               
               
               Cow position:chr9:39591202-39591096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-107
               
               
               Cow position:chr9:9817953-9818060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-118
               
               
               Cow position:chr9:9611587-9611705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-118
               
               
               Cow position:chr9:30187005-30186888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:3-119
               
               
               Cow position:chr9:43670154-43670035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-123
               
               
               Cow position:chr9:27443178-27443300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-127
               
               
               Cow position:chr9:5414751-5414879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-127
               
               
               Cow position:chr9:17993054-17993177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-127
               
               
               Cow position:chr9:56177174-56177047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-129
               
               
               Cow position:chr9:53603405-53603534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:3-145
               
               
               Cow position:chr9:8387120-8386975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-155
               
               
               Cow position:chr9:42053230-42053385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr9:50900336-50900494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr9:55758742-55758584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-160
               
               
               Cow position:chr9:36622021-36621861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-162
               
               
               Cow position:chr9:62401022-62401183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-163
               
               
               Cow position:chr9:16639574-16639412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 156

               
               
               Conread position:3-167
               
               
               Cow position:chr9:13620697-13620864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-169
               
               
               Cow position:chr9:3388526-3388693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:3-171
               
               
               Cow position:chr9:12378748-12378577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-172
               
               
               Cow position:chr9:216711-216883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr9:43302301-43302480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-179
               
               
               Cow position:chr9:58674609-58674787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:3-189
               
               
               Cow position:chr9:59540733-59540554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 60

               
               
               Conread position:3-194
               
               
               Cow position:chr9:18243683-18243877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-194
               
               
               Cow position:chr9:24423822-24423628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-196
               
               
               Cow position:chr9:37908147-37907951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-202
               
               
               Cow position:chr9:46670227-46670029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:3-205
               
               
               Cow position:chr9:40316434-40316231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-209
               
               
               Cow position:chr9:6329109-6329316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-209
               
               
               Cow position:chr9:17302680-17302887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-210
               
               
               Cow position:chr9:23028730-23028940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-211
               
               
               Cow position:chr9:59539209-59539001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 188

               
               
               Conread position:3-216
               
               
               Cow position:chr9:55796806-55797020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 108

               
               
               Conread position:3-217
               
               
               Cow position:chr9:1405107-1404892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 138

               
               
               Conread position:3-217
               
               
               Cow position:chr9:3932814-3933030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-218
               
               
               Cow position:chr9:38634079-38633861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-218
               
               
               Cow position:chr9:44821184-44820968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:3-219
               
               
               Cow position:chr9:5058780-5059001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:3-219
               
               
               Cow position:chr9:13181209-13181000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr9:25547854-25548074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr9:58747522-58747738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:3-221
               
               
               Cow position:chr9:3756539-3756751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:3-221
               
               
               Cow position:chr9:15987305-15987084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:3-221
               
               
               Cow position:chr9:31810877-31810656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr9:37158312-37158531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-221
               
               
               Cow position:chr9:42902136-42902356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-221
               
               
               Cow position:chr9:47171353-47171132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr9:51692320-51692541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-221
               
               
               Cow position:chr9:54997173-54996952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:3-224
               
               
               Cow position:chr9:174473-174697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:388706-388481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 29

               
               
               Conread position:3-224
               
               
               Cow position:chr9:777511-777737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:873952-873732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:3-224
               
               
               Cow position:chr9:1062396-1062619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):36, 213

               
               
               Conread position:3-224
               
               
               Cow position:chr9:1070984-1071208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:1838250-1838031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:3-224
               
               
               Cow position:chr9:1938740-1938957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr9:1983671-1983451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:3-224
               
               
               Cow position:chr9:1991254-1991476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):38, 136

               
               
               Conread position:3-224
               
               
               Cow position:chr9:1998001-1998220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:3-224
               
               
               Cow position:chr9:2495441-2495665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr9:2548395-2548619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:3052565-3052341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:3411595-3411818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:3-224
               
               
               Cow position:chr9:3806894-3806672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 181

               
               
               Conread position:3-224
               
               
               Cow position:chr9:4127656-4127866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:3-224
               
               
               Cow position:chr9:4940199-4940423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:5328067-5328276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 29

               
               
               Conread position:3-224
               
               
               Cow position:chr9:5452340-5452564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:5628119-5627895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:6365676-6365453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr9:6707618-6707842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:7006040-7005817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:3-224
               
               
               Cow position:chr9:7103931-7104155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:8281970-8282192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chr9:9016374-9016150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:9210443-9210219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:9491656-9491866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):156, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr9:9872239-9872015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:10678630-10678852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr9:12161897-12161671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:3-224
               
               
               Cow position:chr9:12285408-12285631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 201

               
               
               Conread position:3-224
               
               
               Cow position:chr9:13187504-13187280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:13472277-13472487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 52

               
               
               Conread position:3-224
               
               
               Cow position:chr9:15052589-15052813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:16178884-16178663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr9:17061058-17061281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:3-224
               
               
               Cow position:chr9:17633787-17633563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 142

               
               
               Conread position:3-224
               
               
               Cow position:chr9:18071781-18071559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr9:18506524-18506748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:18539957-18539738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-224
               
               
               Cow position:chr9:18710792-18710569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr9:19079164-19078941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:3-224
               
               
               Cow position:chr9:20409668-20409460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):28, 141

               
               
               Conread position:3-224
               
               
               Cow position:chr9:20941778-20941548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:20988595-20988375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:3-224
               
               
               Cow position:chr9:22803351-22803576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:23421883-23421662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:3-224
               
               
               Cow position:chr9:24873657-24873874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):93, 122

               
               
               Conread position:3-224
               
               
               Cow position:chr9:26087705-26087926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):97, 107

               
               
               Conread position:3-224
               
               
               Cow position:chr9:27038413-27038183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):33, 128

               
               
               Conread position:3-224
               
               
               Cow position:chr9:27781612-27781836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:28657757-28657976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-224
               
               
               Cow position:chr9:28702749-28702526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 218

               
               
               Conread position:3-224
               
               
               Cow position:chr9:29338207-29337981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr9:30139318-30139532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:3-224
               
               
               Cow position:chr9:30401582-30401358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:30675374-30675151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:3-224
               
               
               Cow position:chr9:31417216-31417440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:32972666-32972443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:3-224
               
               
               Cow position:chr9:33057082-33056859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 197

               
               
               Conread position:3-224
               
               
               Cow position:chr9:33843623-33843399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:34059334-34059557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:34238459-34238683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:34690230-34690454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:35565239-35565463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:35624614-35624390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:36829752-36829976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:36844640-36844853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-224
               
               
               Cow position:chr9:37168766-37168548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:3-224
               
               
               Cow position:chr9:37174105-37174329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:37253704-37253480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:39303253-39303477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:41312741-41312965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:42570515-42570290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:42868572-42868797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:43494348-43494124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:43496434-43496210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:44168891-44168665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-224
               
               
               Cow position:chr9:44202780-44203004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:45792148-45791924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:46627611-46627387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:46667498-46667722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:48794992-48795216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:49981796-49981580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-224
               
               
               Cow position:chr9:50326996-50326773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 201

               
               
               Conread position:3-224
               
               
               Cow position:chr9:51178369-51178593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:52001810-52002035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:52526451-52526227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:53776992-53776769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:3-224
               
               
               Cow position:chr9:54413310-54413533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:3-224
               
               
               Cow position:chr9:54459202-54459426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:55031804-55031581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:3-224
               
               
               Cow position:chr9:59479557-59479772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:3-224
               
               
               Cow position:chr9:59495883-59496107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:60409702-60409478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:62669254-62669474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:3-224
               
               
               Cow position:chr9:62817921-62818145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:63563720-63563490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr9:64011929-64012153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr9:6252864-6252642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:3-226
               
               
               Cow position:chr9:12260065-12260291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr9:8601591-8601816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):93, 107

               
               
               Conread position:4-173
               
               
               Cow position:chr9:29106174-29106002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-194
               
               
               Cow position:chr9:15982001-15981809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:155
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:4-221
               
               
               Cow position:chr9:62443684-62443898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:4-221
               
               
               Cow position:chr9:62764009-62764228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:4-224
               
               
               Cow position:chr9:2173832-2173608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):192, 92

               
               
               Conread position:4-224
               
               
               Cow position:chr9:5887090-5887315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:4-224
               
               
               Cow position:chr9:19545809-19545587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 150

               
               
               Conread position:4-224
               
               
               Cow position:chr9:22319117-22319339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:4-224
               
               
               Cow position:chr9:22442779-22442567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:4-224
               
               
               Cow position:chr9:24917989-24918212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr9:37097902-37097683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:4-225
               
               
               Cow position:chr9:13220836-13220615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 169

               
               
               Conread position:4-226
               
               
               Cow position:chr9:1850353-1850569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:5-127
               
               
               Cow position:chr9:10326531-10326406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-216
               
               
               Cow position:chr9:9623232-9623022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:5-221
               
               
               Cow position:chr9:21461758-21461545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):91, 165

               
               
               Conread position:5-224
               
               
               Cow position:chr9:9957888-9958108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):91, 105

               
               
               Conread position:5-224
               
               
               Cow position:chr9:14045963-14045749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:5-224
               
               
               Cow position:chr9:18109997-18109778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:5-224
               
               
               Cow position:chr9:19155994-19156216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr9:29193272-29193492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 157

               
               
               Conread position:5-224
               
               
               Cow position:chr9:30281723-30281940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:5-224
               
               
               Cow position:chr9:30439693-30439474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):35, 128

               
               
               Conread position:5-224
               
               
               Cow position:chr9:33845316-33845094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr9:46524921-46525130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:5-224
               
               
               Cow position:chr9:56861872-56862089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:7-201
               
               
               Cow position:chr9:8738349-8738545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 105

               
               
               Conread position:7-224
               
               
               Cow position:chr9:4647347-4647565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 154

               
               
               Conread position:8-224
               
               
               Cow position:chr9:13493040-13492832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:9-199
               
               
               Cow position:chr9:25974692-25974882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):87, 130

               
               
               Conread position:18-221
               
               
               Cow position:chr9:64049553-64049353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 157

               
               
               Conread position:20-224
               
               
               Cow position:chr9:26077596-26077790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):76, 65

               
               
               Conread position:21-224
               
               
               Cow position:chr9:7058769-7058974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:21-224
               
               
               Cow position:chr9:10567089-10567289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:22-221
               
               
               Cow position:chr9:42216633-42216434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:22-224
               
               
               Cow position:chr9:5007254-5007049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:22-224
               
               
               Cow position:chr9:10939995-10939800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 68

               
               
               Conread position:23-193
               
               
               Cow position:chr9:22755647-22755817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):73, 21

               
               
               Conread position:23-196
               
               
               Cow position:chr9:33068223-33068396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:23-210
               
               
               Cow position:chr9:2222943-2222753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:23-224
               
               
               Cow position:chr9:2864287-2864489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 110

               
               
               Conread position:23-224
               
               
               Cow position:chr9:34900756-34900543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:24-209
               
               
               Cow position:chr9:3075417-3075232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 129

               
               
               Conread position:24-224
               
               
               Cow position:chr9:4191560-4191357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:24-224
               
               
               Cow position:chr9:34460324-34460527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:26-224
               
               
               Cow position:chr9:9021328-9021529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:26-224
               
               
               Cow position:chr9:14003306-14003113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):10, 65

               
               
               Conread position:28-221
               
               
               Cow position:chr9:1519859-1519670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):168, 68

               
               
               Conread position:37-224
               
               
               Cow position:chr9:59431763-59431578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 73

               
               
               Conread position:40-224
               
               
               Cow position:chr9:3959922-3960107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:40-224
               
               
               Cow position:chr9:17588398-17588213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:151
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr9:51010814-51010637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:43-167
               
               
               Cow position:chr9:14386835-14386710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:43-224
               
               
               Cow position:chr9:2676973-2677148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:43-224
               
               
               Cow position:chr9:17300872-17301051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):53, 42

               
               
               Conread position:43-229
               
               
               Cow position:chr9:24725852-24725671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:154
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:44-224
               
               
               Cow position:chr9:9261628-9261450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):52, 44

               
               
               Conread position:48-219
               
               
               Cow position:chr9:59167469-59167642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):51, 103

               
               
               Conread position:54-218
               
               
               Cow position:chr9:23527005-23526838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):42, 57

               
               
               Conread position:225-436
               
               
               Cow position:chr9:3725323-3725110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:225-547
               
               
               Cow position:chr9:922002-921680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 73

               
               
               Conread position:1-220
               
               
               Cow position:chrX:2649139-2649362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:2-224
               
               
               Cow position:chrX:2813273-2813499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:2-224
               
               
               Cow position:chrX:16711165-16710940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:2-224
               
               
               Cow position:chrX:21793799-21793574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:2-224
               
               
               Cow position:chrX:30165453-30165678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-107
               
               
               Cow position:chrX:28313633-28313526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-116
               
               
               Cow position:chrX:40580955-40581070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-118
               
               
               Cow position:chrX:15091556-15091675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-122
               
               
               Cow position:chrX:11819464-11819585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-125
               
               
               Cow position:chrX:19109833-19109958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-125
               
               
               Cow position:chrX:24442031-24442156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chrX:865604-865477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chrX:2159973-2159846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-127
               
               
               Cow position:chrX:11950278-11950405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-127
               
               
               Cow position:chrX:45236674-45236547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-138
               
               
               Cow position:chrX:36479427-36479565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-141
               
               
               Cow position:chrX:11855373-11855232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-142
               
               
               Cow position:chrX:18898441-18898583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-145
               
               
               Cow position:chrX:13031003-13031148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-145
               
               
               Cow position:chrX:27704807-27704662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-146
               
               
               Cow position:chrX:27750456-27750310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-149
               
               
               Cow position:chrX:8144673-8144818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:3-157
               
               
               Cow position:chrX:11566122-11565965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-158
               
               
               Cow position:chrX:3406134-3406291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:3-158
               
               
               Cow position:chrX:5124151-5124309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-160
               
               
               Cow position:chrX:45042638-45042476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-161
               
               
               Cow position:chrX:15113880-15113719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-167
               
               
               Cow position:chrX:17794059-17793896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):18, 104

               
               
               Conread position:3-168
               
               
               Cow position:chrX:35240080-35239912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-168
               
               
               Cow position:chrX:40365537-40365706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-174
               
               
               Cow position:chrX:23415487-23415661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:3-175
               
               
               Cow position:chrX:35937868-35938042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-176
               
               
               Cow position:chrX:42466786-42466958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:3-179
               
               
               Cow position:chrX:22601202-22601381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-182
               
               
               Cow position:chrX:3827875-3827693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-186
               
               
               Cow position:chrX:37134425-37134611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-190
               
               
               Cow position:chrX:21662244-21662060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:154
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:3-191
               
               
               Cow position:chrX:6766527-6766717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:3-194
               
               
               Cow position:chrX:5392367-5392561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-194
               
               
               Cow position:chrX:21063680-21063489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:3-194
               
               
               Cow position:chrX:30196506-30196312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-194
               
               
               Cow position:chrX:34993384-34993193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:3-194
               
               
               Cow position:chrX:44874295-44874486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:3-195
               
               
               Cow position:chrX:24317030-24316835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:3-198
               
               
               Cow position:chrX:38330590-38330394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-200
               
               
               Cow position:chrX:3211328-3211528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:3-200
               
               
               Cow position:chrX:39939545-39939745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:3-203
               
               
               Cow position:chrX:1947742-1947936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:3-203
               
               
               Cow position:chrX:40560333-40560535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:3-204
               
               
               Cow position:chrX:10301339-10301135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 138

               
               
               Conread position:3-206
               
               
               Cow position:chrX:21254987-21254781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-209
               
               
               Cow position:chrX:2293392-2293601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-209
               
               
               Cow position:chrX:4482166-4481966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:3-211
               
               
               Cow position:chrX:37118118-37117906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:3-212
               
               
               Cow position:chrX:620056-620268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-213
               
               
               Cow position:chrX:26447287-26447087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-214
               
               
               Cow position:chrX:10866661-10866867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:3-215
               
               
               Cow position:chrX:2008495-2008705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:3-215
               
               
               Cow position:chrX:28624553-28624767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:3-216
               
               
               Cow position:chrX:3649615-3649827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:3-216
               
               
               Cow position:chrX:43075091-43074875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chrX:3081923-3082143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:3-217
               
               
               Cow position:chrX:5365386-5365606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-217
               
               
               Cow position:chrX:6406562-6406346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:3-217
               
               
               Cow position:chrX:6453905-6453688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chrX:6581143-6580926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chrX:28518512-28518729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-217
               
               
               Cow position:chrX:29700735-29700950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):36, 187

               
               
               Conread position:3-217
               
               
               Cow position:chrX:30681296-30681509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:3-217
               
               
               Cow position:chrX:46296869-46296653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:3-219
               
               
               Cow position:chrX:13178400-13178618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:3-219
               
               
               Cow position:chrX:17889652-17889864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-219
               
               
               Cow position:chrX:30180716-30180935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-219
               
               
               Cow position:chrX:39702062-39701859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:3-220
               
               
               Cow position:chrX:5354095-5354312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:3-220
               
               
               Cow position:chrX:21226685-21226467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-220
               
               
               Cow position:chrX:23022521-23022306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 86

               
               
               Conread position:3-220
               
               
               Cow position:chrX:30053260-30053480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-220
               
               
               Cow position:chrX:39185381-39185161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chrX:2559752-2559973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chrX:2579627-2579406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chrX:4767898-4767683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:3-221
               
               
               Cow position:chrX:20503848-20503630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:3-221
               
               
               Cow position:chrX:23221835-23222045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):35, 172

               
               
               Conread position:3-221
               
               
               Cow position:chrX:23387330-23387546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:3-221
               
               
               Cow position:chrX:23395815-23395594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chrX:24413238-24413014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chrX:24483159-24483375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:3-221
               
               
               Cow position:chrX:25573560-25573339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-221
               
               
               Cow position:chrX:27616020-27615801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 158

               
               
               Conread position:3-221
               
               
               Cow position:chrX:29880072-29880291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:3-221
               
               
               Cow position:chrX:35287633-35287412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:3-221
               
               
               Cow position:chrX:40225032-40225247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:3-221
               
               
               Cow position:chrX:41847322-41847541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:3-221
               
               
               Cow position:chrX:42222565-42222782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:3-221
               
               
               Cow position:chrX:45373900-45374120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):33, 135

               
               
               Conread position:3-224
               
               
               Cow position:chrX:671785-672009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:1550173-1549949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:2048320-2048096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:2479416-2479644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:2486424-2486648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:3144837-3144613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:3-224
               
               
               Cow position:chrX:3155377-3155597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:3-224
               
               
               Cow position:chrX:3361029-3360805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:3372645-3372868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:3417928-3418152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:3464869-3465090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):42, 158

               
               
               Conread position:3-224
               
               
               Cow position:chrX:4342959-4342735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:4407091-4406867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chrX:4622745-4622969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:5248595-5248374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):33, 148

               
               
               Conread position:3-224
               
               
               Cow position:chrX:5280646-5280868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:5289478-5289700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:5361218-5360994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:5375069-5375293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:5646896-5647120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:6201734-6201517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:3-224
               
               
               Cow position:chrX:6235648-6235863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:3-224
               
               
               Cow position:chrX:6279395-6279621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:3-224
               
               
               Cow position:chrX:6372388-6372164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:7096666-7096443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:7120815-7120591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:7485015-7484791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:7551593-7551817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:8590790-8590564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:8640996-8640772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:9011539-9011315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:9095850-9095627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chrX:9763863-9764087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:10059673-10059450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 201

               
               
               Conread position:3-224
               
               
               Cow position:chrX:10445207-10445431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:11409126-11409350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:11461788-11462009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 150

               
               
               Conread position:3-224
               
               
               Cow position:chrX:11976238-11976461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 162

               
               
               Conread position:3-224
               
               
               Cow position:chrX:12310181-12310401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 135

               
               
               Conread position:3-224
               
               
               Cow position:chrX:12360096-12359872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:12651612-12651833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 180

               
               
               Conread position:3-224
               
               
               Cow position:chrX:13406078-13406302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:14125036-14125260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:14458959-14459197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:14598054-14597830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:14801611-14801834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:3-224
               
               
               Cow position:chrX:15039861-15040078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:3-224
               
               
               Cow position:chrX:15140328-15140547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-224
               
               
               Cow position:chrX:15175344-15175565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:3-224
               
               
               Cow position:chrX:15260411-15260631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 195

               
               
               Conread position:3-224
               
               
               Cow position:chrX:15621324-15621547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chrX:16040471-16040695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:16085450-16085674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:16086915-16087139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:16278860-16278640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-224
               
               
               Cow position:chrX:16359799-16360023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:16525998-16525774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:16702879-16702655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:16782488-16782266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 188

               
               
               Conread position:3-224
               
               
               Cow position:chrX:16803659-16803883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:16808606-16808830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:17290388-17290167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):36, 141

               
               
               Conread position:3-224
               
               
               Cow position:chrX:17663708-17663930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chrX:17782708-17782484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:17891754-17891530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:17994667-17994446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 180

               
               
               Conread position:3-224
               
               
               Cow position:chrX:18023784-18024008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:18193898-18193674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:18244193-18243977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:3-224
               
               
               Cow position:chrX:18455562-18455786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:3-224
               
               
               Cow position:chrX:18488506-18488730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:18656597-18656821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:19398986-19398762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:19608884-19608660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 214

               
               
               Conread position:3-224
               
               
               Cow position:chrX:20020787-20020565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chrX:20356787-20357015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:20675076-20674852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:20792344-20792123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:3-224
               
               
               Cow position:chrX:21343603-21343379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:21582651-21582427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:21685827-21685603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:21768012-21767784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:21818262-21818471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):127, 29

               
               
               Conread position:3-224
               
               
               Cow position:chrX:21833092-21832870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:3-224
               
               
               Cow position:chrX:22077134-22077356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chrX:22493239-22493018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 159

               
               
               Conread position:3-224
               
               
               Cow position:chrX:22538825-22539049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:22564479-22564699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):92, 57

               
               
               Conread position:3-224
               
               
               Cow position:chrX:22811098-22810873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:22819286-22819062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:23280232-23280011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:3-224
               
               
               Cow position:chrX:23341783-23342007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:23572608-23572833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:23986458-23986234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:24109396-24109620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chrX:24309892-24310115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):36, 132

               
               
               Conread position:3-224
               
               
               Cow position:chrX:24588528-24588750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:25289471-25289695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:25451544-25451320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:3-224
               
               
               Cow position:chrX:26230550-26230774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:26275346-26275123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:3-224
               
               
               Cow position:chrX:26508435-26508217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:3-224
               
               
               Cow position:chrX:26531181-26530957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:26618332-26618108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:26755434-26755655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:3-224
               
               
               Cow position:chrX:27095337-27095121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:3-224
               
               
               Cow position:chrX:27305137-27304913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:27318439-27318215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:27450841-27451061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chrX:27590822-27591039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:3-224
               
               
               Cow position:chrX:27758916-27758693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:3-224
               
               
               Cow position:chrX:28058530-28058306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:28133305-28133084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:3-224
               
               
               Cow position:chrX:28503544-28503320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:28588179-28587956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 175

               
               
               Conread position:3-224
               
               
               Cow position:chrX:28647062-28647286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 21

               
               
               Conread position:3-224
               
               
               Cow position:chrX:28866804-28867031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):38, 109

               
               
               Conread position:3-224
               
               
               Cow position:chrX:29083275-29083051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:29288201-29287982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 31

               
               
               Conread position:3-224
               
               
               Cow position:chrX:29892295-29892071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:29916137-29916362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:29942364-29942143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:3-224
               
               
               Cow position:chrX:30159782-30160005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 173

               
               
               Conread position:3-224
               
               
               Cow position:chrX:30199784-30200008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:30228905-30229128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 207

               
               
               Conread position:3-224
               
               
               Cow position:chrX:30455413-30455632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 168

               
               
               Conread position:3-224
               
               
               Cow position:chrX:30836595-30836371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:30964778-30965002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:31202049-31201825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:3-224
               
               
               Cow position:chrX:31261424-31261649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:3-224
               
               
               Cow position:chrX:31495944-31495721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:3-224
               
               
               Cow position:chrX:31728671-31728451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:3-224
               
               
               Cow position:chrX:31978633-31978856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:3-224
               
               
               Cow position:chrX:32329416-32329193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:3-224
               
               
               Cow position:chrX:32584723-32584946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chrX:32643694-32643470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:33685339-33685115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:33763353-33763129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:33803787-33804002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chrX:34094914-34094690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:34221973-34221742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 197

               
               
               Conread position:3-224
               
               
               Cow position:chrX:34761274-34761050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:36535523-36535745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chrX:36729592-36729368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:36839914-36839697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:3-224
               
               
               Cow position:chrX:37080310-37080531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:3-224
               
               
               Cow position:chrX:37852344-37852122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):42, 174

               
               
               Conread position:3-224
               
               
               Cow position:chrX:38150896-38150673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 181

               
               
               Conread position:3-224
               
               
               Cow position:chrX:38218185-38217964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 160

               
               
               Conread position:3-224
               
               
               Cow position:chrX:38231059-38231283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:38852369-38852147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:3-224
               
               
               Cow position:chrX:38999039-38998825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:3-224
               
               
               Cow position:chrX:39548607-39548383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:39560451-39560675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:39730931-39731153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:40070403-40070619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):24, 91

               
               
               Conread position:3-224
               
               
               Cow position:chrX:40184281-40184057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:3-224
               
               
               Cow position:chrX:41791507-41791735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:41884970-41885193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:3-224
               
               
               Cow position:chrX:42733080-42732856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-224
               
               
               Cow position:chrX:44193232-44193452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:3-225
               
               
               Cow position:chrX:24280128-24279900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-226
               
               
               Cow position:chrX:21389786-21389560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:3-226
               
               
               Cow position:chrX:24467916-24468141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:3-226
               
               
               Cow position:chrX:27498037-27497813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):33, 172

               
               
               Conread position:3-226
               
               
               Cow position:chrX:32063959-32064185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 208

               
               
               Conread position:3-226
               
               
               Cow position:chrX:41156519-41156294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 167

               
               
               Conread position:3-227
               
               
               Cow position:chrX:2103613-2103386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-227
               
               
               Cow position:chrX:22838480-22838253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-227
               
               
               Cow position:chrX:23038777-23039003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:3-227
               
               
               Cow position:chrX:27977626-27977851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:4-178
               
               
               Cow position:chrX:45400813-45400988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:4-202
               
               
               Cow position:chrX:2300089-2299892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:4-209
               
               
               Cow position:chrX:17158603-17158808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 147

               
               
               Conread position:4-220
               
               
               Cow position:chrX:21626493-21626710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):11, 15

               
               
               Conread position:4-221
               
               
               Cow position:chrX:23452238-23452460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chrX:323121-322898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-224
               
               
               Cow position:chrX:8482654-8482432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:4-224
               
               
               Cow position:chrX:15121954-15122176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 200

               
               
               Conread position:4-224
               
               
               Cow position:chrX:20953740-20953517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:4-224
               
               
               Cow position:chrX:21592498-21592277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 158

               
               
               Conread position:4-224
               
               
               Cow position:chrX:22118287-22118510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-224
               
               
               Cow position:chrX:25282288-25282509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:4-224
               
               
               Cow position:chrX:27983146-27983367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:4-224
               
               
               Cow position:chrX:28879388-28879597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:4-224
               
               
               Cow position:chrX:29099624-29099403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:4-224
               
               
               Cow position:chrX:30060094-30059871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:4-225
               
               
               Cow position:chrX:11744473-11744253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:5-139
               
               
               Cow position:chrX:20580499-20580362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chrX:14462521-14462304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:5-224
               
               
               Cow position:chrX:24292457-24292679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 203

               
               
               Conread position:5-224
               
               
               Cow position:chrX:28753130-28753352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:5-224
               
               
               Cow position:chrX:32145057-32145271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:5-224
               
               
               Cow position:chrX:39556589-39556803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:5-224
               
               
               Cow position:chrX:39697969-39697750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:5-227
               
               
               Cow position:chrX:30164032-30164255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):31, 193

               
               
               Conread position:6-215
               
               
               Cow position:chrX:30135137-30135349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:6-224
               
               
               Cow position:chrX:7572596-7572375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:6-224
               
               
               Cow position:chrX:22870024-22869803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:7-199
               
               
               Cow position:chrX:158814-158619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:7-224
               
               
               Cow position:chrX:2500426-2500646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:9-224
               
               
               Cow position:chrX:15977751-15977969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:18-193
               
               
               Cow position:chrX:17229157-17228974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 120

               
               
               Conread position:19-224
               
               
               Cow position:chrX:40827919-40828122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):20, 79

               
               
               Conread position:22-202
               
               
               Cow position:chrX:6044271-6044451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:23-224
               
               
               Cow position:chrX:4905799-4906003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:23-224
               
               
               Cow position:chrX:33537767-33537568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:24-224
               
               
               Cow position:chrX:23134777-23134575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):15, 139

               
               
               Conread position:24-224
               
               
               Cow position:chrX:24321440-24321644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:28-210
               
               
               Cow position:chrX:41879748-41879921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:28-224
               
               
               Cow position:chrX:29930209-29930408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:35-214
               
               
               Cow position:chrX:8400377-8400555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:38-224
               
               
               Cow position:chrX:30435446-30435634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:151
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:40-224
               
               
               Cow position:chrX:19473979-19474164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:40-224
               
               
               Cow position:chrX:20742022-20741837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:150
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:43-202
               
               
               Cow position:chrX:11074019-11074177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:43-212
               
               
               Cow position:chrX:44053983-44053812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:142
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:44-224
               
               
               Cow position:chrX:2185390-2185210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 66

               
               
               Conread position:44-224
               
               
               Cow position:chrX:24447119-24446938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:45-224
               
               
               Cow position:chrX:21750081-21750258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:49-224
               
               
               Cow position:chrX:6655860-6656034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):47, 75

               
               
               Conread position:220-514
               
               
               Cow position:chrX:29283750-29283454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:224-540
               
               
               Cow position:chrX:16236039-16235721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:236-531
               
               
               Cow position:chrX:28552351-28552058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):158, 90

               
               
               Conread position:333-540
               
               
               Cow position:chrX:22809060-22808856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:364-540
               
               
               Cow position:chrX:21585279-21585101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):42, 0