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Cow genome map

           
Conread name:
           
rdbla0119_m12.y1
        

               
Conread position:
               
36-272
               

               
Cow position:
               
chr1:525048-524817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 8
               

               
Conread position:
               
39-396
               

               
Cow position:
               
chr1:42482442-42482087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
39-432
               

               
Cow position:
               
chr1:101835061-101834673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
39-440
               

               
Cow position:
               
chr1:88913564-88913158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 133
               

               
Conread position:
               
40-299
               

               
Cow position:
               
chr1:4444598-4444859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
65, 39
               

               
Conread position:
               
41-374
               

               
Cow position:
               
chr1:90904516-90904847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 105
               

               
Conread position:
               
42-433
               

               
Cow position:
               
chr1:64572755-64572361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
48-304
               

               
Cow position:
               
chr1:95156730-95156987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
5, 117
               

               
Conread position:
               
48-347
               

               
Cow position:
               
chr1:71770070-71770383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 146
               

               
Conread position:
               
48-430
               

               
Cow position:
               
chr1:65318812-65318426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 140
               

               
Conread position:
               
48-535
               

               
Cow position:
               
chr1:33720339-33719864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
48-535
               

               
Cow position:
               
chr1:40600260-40599802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
49-440
               

               
Cow position:
               
chr1:42175961-42175565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 120
               

               
Conread position:
               
50-327
               

               
Cow position:
               
chr1:3757410-3757687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 130
               

               
Conread position:
               
50-360
               

               
Cow position:
               
chr1:48213914-48214241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
50-535
               

               
Cow position:
               
chr1:196776-197252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 31
               

               
Conread position:
               
51-432
               

               
Cow position:
               
chr1:35555148-35554753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
10, 143
               

               
Conread position:
               
51-440
               

               
Cow position:
               
chr1:90975843-90976246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 160
               

               
Conread position:
               
51-463
               

               
Cow position:
               
chr1:20667520-20667924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
52-250
               

               
Cow position:
               
chr1:72069876-72070083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 20
               

               
Conread position:
               
52-418
               

               
Cow position:
               
chr1:92996660-92997036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
52-534
               

               
Cow position:
               
chr1:11853459-11853939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
53-299
               

               
Cow position:
               
chr1:53452750-53452519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
53-321
               

               
Cow position:
               
chr1:95835562-95835836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 145
               

               
Conread position:
               
53-393
               

               
Cow position:
               
chr1:23998693-23999033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 50
               

               
Conread position:
               
53-521
               

               
Cow position:
               
chr1:4539190-4539675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
12, 30
               

               
Conread position:
               
53-535
               

               
Cow position:
               
chr1:53374656-53374185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 98
               

               
Conread position:
               
53-535
               

               
Cow position:
               
chr1:72034698-72035179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 78
               

               
Conread position:
               
54-308
               

               
Cow position:
               
chr1:77739950-77739695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
54-343
               

               
Cow position:
               
chr1:50432251-50432548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
14, 143
               

               
Conread position:
               
54-514
               

               
Cow position:
               
chr1:4691815-4691364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
54-514
               

               
Cow position:
               
chr1:88926158-88926608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
55-253
               

               
Cow position:
               
chr1:99637024-99637226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 28
               

               
Conread position:
               
55-262
               

               
Cow position:
               
chr1:102523413-102523622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
58, 69
               

               
Conread position:
               
55-266
               

               
Cow position:
               
chr1:69378369-69378584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 117
               

               
Conread position:
               
55-266
               

               
Cow position:
               
chr1:102730527-102730747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
19, 91
               

               
Conread position:
               
55-275
               

               
Cow position:
               
chr1:70483110-70483328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
55-297
               

               
Cow position:
               
chr1:40212124-40212348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
55-304
               

               
Cow position:
               
chr1:38706627-38706877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
55-319
               

               
Cow position:
               
chr1:72422179-72422444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
55-379
               

               
Cow position:
               
chr1:102305923-102306243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
55-382
               

               
Cow position:
               
chr1:22824133-22823804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
55-400
               

               
Cow position:
               
chr1:84103834-84104173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
56, 18
               

               
Conread position:
               
55-437
               

               
Cow position:
               
chr1:97232198-97231799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 148
               

               
Conread position:
               
55-481
               

               
Cow position:
               
chr1:70344275-70343844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
20, 145
               

               
Conread position:
               
55-508
               

               
Cow position:
               
chr1:85867825-85867371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
55-514
               

               
Cow position:
               
chr1:64803867-64804336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 145
               

               
Conread position:
               
55-520
               

               
Cow position:
               
chr1:55230197-55229749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
55-533
               

               
Cow position:
               
chr1:63595826-63596308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
56-256
               

               
Cow position:
               
chr1:11708801-11708993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
56-257
               

               
Cow position:
               
chr1:91743234-91743435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 91
               

               
Conread position:
               
56-312
               

               
Cow position:
               
chr1:98912234-98911978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 194
               

               
Conread position:
               
56-347
               

               
Cow position:
               
chr1:51609604-51609309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
56, 136
               

               
Conread position:
               
56-413
               

               
Cow position:
               
chr1:95638060-95637697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
56-445
               

               
Cow position:
               
chr1:86110520-86110896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 15
               

               
Conread position:
               
56-535
               

               
Cow position:
               
chr1:56225696-56225227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 91
               

               
Conread position:
               
57-294
               

               
Cow position:
               
chr1:95153102-95152857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
57-302
               

               
Cow position:
               
chr1:20871330-20871580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
57-317
               

               
Cow position:
               
chr1:1496302-1496564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 140
               

               
Conread position:
               
57-382
               

               
Cow position:
               
chr1:648554-648223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 137
               

               
Conread position:
               
57-418
               

               
Cow position:
               
chr1:29452147-29451781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
54, 8
               

               
Conread position:
               
57-444
               

               
Cow position:
               
chr1:96081702-96081320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
156, 22
               

               
Conread position:
               
57-445
               

               
Cow position:
               
chr1:49077100-49077507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
57-514
               

               
Cow position:
               
chr1:55705023-55705482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 25
               

               
Conread position:
               
57-535
               

               
Cow position:
               
chr1:1980885-1981360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 320
               

               
Conread position:
               
58-428
               

               
Cow position:
               
chr1:91023242-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
58-472
               

               
Cow position:
               
chr1:25735090-25734667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
58-535
               

               
Cow position:
               
chr1:53623179-53622715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
58-535
               

               
Cow position:
               
chr1:81290731-81290268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 84
               

               
Conread position:
               
59-288
               

               
Cow position:
               
chr1:97540861-97540628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
60-273
               

               
Cow position:
               
chr1:55685756-55685970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
60-307
               

               
Cow position:
               
chr1:36080054-36079798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 138
               

               
Conread position:
               
60-327
               

               
Cow position:
               
chr1:73020442-73020707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
113, 21
               

               
Conread position:
               
60-363
               

               
Cow position:
               
chr1:6394779-6394478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
60-443
               

               
Cow position:
               
chr1:71665712-71666107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
17, 5
               

               
Conread position:
               
60-445
               

               
Cow position:
               
chr1:89388565-89388171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
60-534
               

               
Cow position:
               
chr1:82936384-82936831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 5
               

               
Conread position:
               
60-534
               

               
Cow position:
               
chr1:100449971-100450439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 22
               

               
Conread position:
               
61-328
               

               
Cow position:
               
chr1:102529634-102529902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
61-348
               

               
Cow position:
               
chr1:54267714-54267999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
61-445
               

               
Cow position:
               
chr1:24777763-24778148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 193
               

               
Conread position:
               
61-453
               

               
Cow position:
               
chr1:57297727-57297306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
61-515
               

               
Cow position:
               
chr1:3429291-3429738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
62-299
               

               
Cow position:
               
chr1:49334168-49334410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 117
               

               
Conread position:
               
62-299
               

               
Cow position:
               
chr1:83093081-83092857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
62-306
               

               
Cow position:
               
chr1:21561238-21560987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
62-327
               

               
Cow position:
               
chr1:81391144-81390872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 101
               

               
Conread position:
               
62-344
               

               
Cow position:
               
chr1:80584648-80584369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
53, 81
               

               
Conread position:
               
62-359
               

               
Cow position:
               
chr1:101159147-101158838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
46, 139
               

               
Conread position:
               
62-402
               

               
Cow position:
               
chr1:5010612-5010961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 134
               

               
Conread position:
               
62-419
               

               
Cow position:
               
chr1:4243108-4243481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
13, 135
               

               
Conread position:
               
62-425
               

               
Cow position:
               
chr1:8128759-8129111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
62-454
               

               
Cow position:
               
chr1:85688402-85688016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
62-461
               

               
Cow position:
               
chr1:28563339-28563749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 182
               

               
Conread position:
               
62-514
               

               
Cow position:
               
chr1:89381496-89381050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
62-521
               

               
Cow position:
               
chr1:102785164-102784724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
62-527
               

               
Cow position:
               
chr1:61005336-61005808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 172
               

               
Conread position:
               
62-530
               

               
Cow position:
               
chr1:42887062-42887508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
62-530
               

               
Cow position:
               
chr1:48581345-48580885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 18
               

               
Conread position:
               
62-531
               

               
Cow position:
               
chr1:71119743-71119265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 84
               

               
Conread position:
               
62-533
               

               
Cow position:
               
chr1:29935173-29935629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
62-533
               

               
Cow position:
               
chr1:72068609-72069075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 117
               

               
Conread position:
               
62-533
               

               
Cow position:
               
chr1:78857106-78857570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 239
               

               
Conread position:
               
62-534
               

               
Cow position:
               
chr1:73545691-73546164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr1:97820902-97820435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
63-219
               

               
Cow position:
               
chr1:44814444-44814608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
63-311
               

               
Cow position:
               
chr1:17056209-17055962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
63-333
               

               
Cow position:
               
chr1:70175321-70175592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 84
               

               
Conread position:
               
63-347
               

               
Cow position:
               
chr1:3966048-3965775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
107, 47
               

               
Conread position:
               
63-370
               

               
Cow position:
               
chr1:96558627-96558924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 107
               

               
Conread position:
               
63-533
               

               
Cow position:
               
chr1:61885132-61884667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 109
               

               
Conread position:
               
63-535
               

               
Cow position:
               
chr1:96964540-96964069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 136
               

               
Conread position:
               
64-308
               

               
Cow position:
               
chr1:27959329-27959577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 185
               

               
Conread position:
               
64-345
               

               
Cow position:
               
chr1:100852920-100852656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
151, 44
               

               
Conread position:
               
64-393
               

               
Cow position:
               
chr1:68844936-68845269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
64-534
               

               
Cow position:
               
chr1:21578028-21577556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 108
               

               
Conread position:
               
64-534
               

               
Cow position:
               
chr1:89509712-89510181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
64-535
               

               
Cow position:
               
chr1:21787542-21787076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 58
               

               
Conread position:
               
64-535
               

               
Cow position:
               
chr1:68817585-68818046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
64-535
               

               
Cow position:
               
chr1:69539902-69539449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
64-535
               

               
Cow position:
               
chr1:81568810-81569286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
65-290
               

               
Cow position:
               
chr1:36688162-36688387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
65-290
               

               
Cow position:
               
chr1:68688797-68688574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
65-339
               

               
Cow position:
               
chr1:3942004-3942267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
152, 35
               

               
Conread position:
               
65-363
               

               
Cow position:
               
chr1:73457878-73458176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
65-377
               

               
Cow position:
               
chr1:77425329-77425006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 243
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chr1:77232357-77232668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
65-398
               

               
Cow position:
               
chr1:56618439-56618768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 103
               

               
Conread position:
               
65-445
               

               
Cow position:
               
chr1:95558257-95557872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
65-453
               

               
Cow position:
               
chr1:484245-484638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
65-533
               

               
Cow position:
               
chr1:61741749-61742216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr1:43505740-43505273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr1:54258786-54258317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 120
               

               
Conread position:
               
66-240
               

               
Cow position:
               
chr1:79169937-79170112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
77, 104
               

               
Conread position:
               
66-286
               

               
Cow position:
               
chr1:100573412-100573633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 77
               

               
Conread position:
               
66-530
               

               
Cow position:
               
chr1:44507185-44506722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 105
               

               
Conread position:
               
66-533
               

               
Cow position:
               
chr1:79844693-79844221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
66-535
               

               
Cow position:
               
chr1:8834-8372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
66-535
               

               
Cow position:
               
chr1:22729269-22728797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
66-535
               

               
Cow position:
               
chr1:48105208-48105684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 163
               

               
Conread position:
               
66-535
               

               
Cow position:
               
chr1:74083972-74084439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 129
               

               
Conread position:
               
67-262
               

               
Cow position:
               
chr1:4329694-4329881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
44, 77
               

               
Conread position:
               
67-304
               

               
Cow position:
               
chr1:93590376-93590607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
144, 15
               

               
Conread position:
               
67-344
               

               
Cow position:
               
chr1:48618032-48618301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
67-346
               

               
Cow position:
               
chr1:46143249-46143526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
67-409
               

               
Cow position:
               
chr1:11172583-11172246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
42, 87
               

               
Conread position:
               
67-453
               

               
Cow position:
               
chr1:49317289-49317669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
67-493
               

               
Cow position:
               
chr1:12464452-12464871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
67-503
               

               
Cow position:
               
chr1:8287414-8287831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 105
               

               
Conread position:
               
67-535
               

               
Cow position:
               
chr1:46693437-46693906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
68-322
               

               
Cow position:
               
chr1:102468408-102468655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 52
               

               
Conread position:
               
68-535
               

               
Cow position:
               
chr1:24132849-24133305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 76
               

               
Conread position:
               
69-312
               

               
Cow position:
               
chr1:102768386-102768149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
143, 13
               

               
Conread position:
               
69-393
               

               
Cow position:
               
chr1:41137935-41138244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
42, 75
               

               
Conread position:
               
69-402
               

               
Cow position:
               
chr1:4701457-4701794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
8, 126
               

               
Conread position:
               
69-528
               

               
Cow position:
               
chr1:25383883-25383419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 78
               

               
Conread position:
               
69-535
               

               
Cow position:
               
chr1:6166444-6166001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
69-535
               

               
Cow position:
               
chr1:29626697-29627165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
70-402
               

               
Cow position:
               
chr1:43311554-43311897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
70-441
               

               
Cow position:
               
chr1:14205954-14206316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
145, 11
               

               
Conread position:
               
70-534
               

               
Cow position:
               
chr1:3324086-3323609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
70-535
               

               
Cow position:
               
chr1:99609579-99609116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 93
               

               
Conread position:
               
71-268
               

               
Cow position:
               
chr1:42775115-42774924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
71-275
               

               
Cow position:
               
chr1:71945869-71946078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
71-296
               

               
Cow position:
               
chr1:45315421-45315651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
71-304
               

               
Cow position:
               
chr1:55753009-55753236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
71-317
               

               
Cow position:
               
chr1:67654114-67654356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
146, 65
               

               
Conread position:
               
71-391
               

               
Cow position:
               
chr1:72356580-72356248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
8, 277
               

               
Conread position:
               
71-460
               

               
Cow position:
               
chr1:76612923-76613305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
71-497
               

               
Cow position:
               
chr1:26178597-26179026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
40, 102
               

               
Conread position:
               
71-535
               

               
Cow position:
               
chr1:84811730-84812186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr1:82513142-82513456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
72-434
               

               
Cow position:
               
chr1:62519576-62519204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
72-462
               

               
Cow position:
               
chr1:24542360-24542763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
72-496
               

               
Cow position:
               
chr1:43872099-43872542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
42, 166
               

               
Conread position:
               
73-191
               

               
Cow position:
               
chr1:93959953-93960069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
73-271
               

               
Cow position:
               
chr1:50585667-50585868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
73-299
               

               
Cow position:
               
chr1:66752424-66752647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
73-315
               

               
Cow position:
               
chr1:41027281-41027042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
36, 73
               

               
Conread position:
               
73-318
               

               
Cow position:
               
chr1:89158499-89158731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
142, 87
               

               
Conread position:
               
73-328
               

               
Cow position:
               
chr1:43286538-43286298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
143, 36
               

               
Conread position:
               
73-346
               

               
Cow position:
               
chr1:78066334-78066602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
73-375
               

               
Cow position:
               
chr1:628177-627867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
73-393
               

               
Cow position:
               
chr1:78794027-78794337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
73-400
               

               
Cow position:
               
chr1:261255-261598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
73-400
               

               
Cow position:
               
chr1:69551268-69551603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
73-402
               

               
Cow position:
               
chr1:20104475-20104147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 73
               

               
Conread position:
               
73-417
               

               
Cow position:
               
chr1:101860278-101860625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
73-496
               

               
Cow position:
               
chr1:34771290-34771714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 378
               

               
Conread position:
               
73-505
               

               
Cow position:
               
chr1:49433052-49433484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 228
               

               
Conread position:
               
73-520
               

               
Cow position:
               
chr1:57575555-57576002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
73-533
               

               
Cow position:
               
chr1:3923595-3924042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
73-534
               

               
Cow position:
               
chr1:53521114-53520657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
73-534
               

               
Cow position:
               
chr1:92197663-92197211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 54
               

               
Conread position:
               
73-535
               

               
Cow position:
               
chr1:37321801-37322255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
73-535
               

               
Cow position:
               
chr1:70829106-70828664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 64
               

               
Conread position:
               
73-535
               

               
Cow position:
               
chr1:78811247-78810786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
74-461
               

               
Cow position:
               
chr1:83072648-83072263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
74-530
               

               
Cow position:
               
chr1:71295096-71295553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 36
               

               
Conread position:
               
74-535
               

               
Cow position:
               
chr1:75745068-75744610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 30
               

               
Conread position:
               
75-337
               

               
Cow position:
               
chr1:81481176-81481439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
75-436
               

               
Cow position:
               
chr1:22192977-22192608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
75-462
               

               
Cow position:
               
chr1:42397989-42398378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 110
               

               
Conread position:
               
75-535
               

               
Cow position:
               
chr1:37706762-37707219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 175
               

               
Conread position:
               
75-535
               

               
Cow position:
               
chr1:38277819-38278295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 86
               

               
Conread position:
               
75-535
               

               
Cow position:
               
chr1:41056886-41056434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
75-535
               

               
Cow position:
               
chr1:52496975-52496526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 36
               

               
Conread position:
               
75-535
               

               
Cow position:
               
chr1:81228129-81228581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
75-535
               

               
Cow position:
               
chr1:92370161-92370609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 82
               

               
Conread position:
               
76-286
               

               
Cow position:
               
chr1:99604986-99605192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
140, 67
               

               
Conread position:
               
76-339
               

               
Cow position:
               
chr1:52912686-52912954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
38, 222
               

               
Conread position:
               
76-340
               

               
Cow position:
               
chr1:88360091-88359823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
32, 233
               

               
Conread position:
               
78-479
               

               
Cow position:
               
chr1:58754594-58754978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
79-268
               

               
Cow position:
               
chr1:95049662-95049853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
79-295
               

               
Cow position:
               
chr1:759209-759432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
79-317
               

               
Cow position:
               
chr1:83606253-83606485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
91, 30
               

               
Conread position:
               
79-343
               

               
Cow position:
               
chr1:79004179-79003913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 129
               

               
Conread position:
               
79-535
               

               
Cow position:
               
chr1:86113193-86113663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 116
               

               
Conread position:
               
81-240
               

               
Cow position:
               
chr1:19384256-19384415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
81-242
               

               
Cow position:
               
chr1:10470623-10470465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
81-283
               

               
Cow position:
               
chr1:7966048-7965851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
81-351
               

               
Cow position:
               
chr1:48206339-48206604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
136, 75
               

               
Conread position:
               
81-367
               

               
Cow position:
               
chr1:100474440-100474145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
81-397
               

               
Cow position:
               
chr1:26934067-26934377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
31, 193
               

               
Conread position:
               
82-339
               

               
Cow position:
               
chr1:79146614-79146878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
82-402
               

               
Cow position:
               
chr1:79640089-79640411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
84-395
               

               
Cow position:
               
chr1:98512135-98511813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
85-267
               

               
Cow position:
               
chr1:29671023-29671210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
85-348
               

               
Cow position:
               
chr1:95072540-95072264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
85-511
               

               
Cow position:
               
chr1:679410-679834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
7, 68
               

               
Conread position:
               
85-535
               

               
Cow position:
               
chr1:62964465-62964029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 85
               

               
Conread position:
               
86-438
               

               
Cow position:
               
chr1:97090513-97090167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
87-323
               

               
Cow position:
               
chr1:85772201-85771968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
87-519
               

               
Cow position:
               
chr1:70227496-70227936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
24, 108
               

               
Conread position:
               
87-535
               

               
Cow position:
               
chr1:35491379-35491829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
83, 107
               

               
Conread position:
               
88-301
               

               
Cow position:
               
chr1:61011369-61011161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 57
               

               
Conread position:
               
88-391
               

               
Cow position:
               
chr1:635490-635795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
88-413
               

               
Cow position:
               
chr1:6294300-6294630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
88-441
               

               
Cow position:
               
chr1:14308835-14309198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
89-290
               

               
Cow position:
               
chr1:62034642-62034837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
89-307
               

               
Cow position:
               
chr1:31855036-31855273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
89-339
               

               
Cow position:
               
chr1:64113607-64113851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
89-348
               

               
Cow position:
               
chr1:45223769-45223514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
16, 57
               

               
Conread position:
               
89-400
               

               
Cow position:
               
chr1:47288437-47288120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
89-535
               

               
Cow position:
               
chr1:34856432-34856879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 99
               

               
Conread position:
               
90-307
               

               
Cow position:
               
chr1:83024973-83025188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 54
               

               
Conread position:
               
90-525
               

               
Cow position:
               
chr1:71078770-71079193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 54
               

               
Conread position:
               
91-402
               

               
Cow position:
               
chr1:17196434-17196751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 52
               

               
Conread position:
               
91-496
               

               
Cow position:
               
chr1:99512072-99512463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
17, 77
               

               
Conread position:
               
91-517
               

               
Cow position:
               
chr1:43388863-43389280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 49
               

               
Conread position:
               
92-504
               

               
Cow position:
               
chr1:98031105-98030696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
94-348
               

               
Cow position:
               
chr1:92032411-92032667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 205
               

               
Conread position:
               
97-535
               

               
Cow position:
               
chr1:1053764-1053338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
264, 120
               

               
Conread position:
               
98-361
               

               
Cow position:
               
chr1:37124308-37124045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
98, 43
               

               
Conread position:
               
100-392
               

               
Cow position:
               
chr1:31794827-31795114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
80, 92
               

               
Conread position:
               
100-523
               

               
Cow position:
               
chr1:70297464-70297033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
102-502
               

               
Cow position:
               
chr1:63139021-63138622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 88
               

               
Conread position:
               
104-371
               

               
Cow position:
               
chr1:89157955-89158218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
113, 33
               

               
Conread position:
               
104-382
               

               
Cow position:
               
chr1:88397667-88397941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
78, 87
               

               
Conread position:
               
104-434
               

               
Cow position:
               
chr1:87197995-87197674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 39
               

               
Conread position:
               
104-464
               

               
Cow position:
               
chr1:92580934-92580580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
111, 82
               

               
Conread position:
               
104-505
               

               
Cow position:
               
chr1:11729346-11728958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 33
               

               
Conread position:
               
104-514
               

               
Cow position:
               
chr1:53398148-53397759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 39
               

               
Conread position:
               
104-514
               

               
Cow position:
               
chr1:72104029-72103617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
109-535
               

               
Cow position:
               
chr1:91816598-91817024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 81
               

               
Conread position:
               
112-534
               

               
Cow position:
               
chr1:635364-634942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 78
               

               
Conread position:
               
112-535
               

               
Cow position:
               
chr1:53458865-53458455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
114-457
               

               
Cow position:
               
chr1:96276888-96277231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 28
               

               
Conread position:
               
119-306
               

               
Cow position:
               
chr1:19962209-19962029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
137-363
               

               
Cow position:
               
chr1:80841793-80841570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 156
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chr1:7023264-7023003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
141-525
               

               
Cow position:
               
chr1:52995167-52994784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 214
               

               
Conread position:
               
143-321
               

               
Cow position:
               
chr1:8670911-8670733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 24
               

               
Conread position:
               
143-371
               

               
Cow position:
               
chr1:50992071-50991844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
74, 24
               

               
Conread position:
               
143-443
               

               
Cow position:
               
chr1:45553102-45553393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
143-530
               

               
Cow position:
               
chr1:71253415-71253800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 97
               

               
Conread position:
               
148-443
               

               
Cow position:
               
chr1:85647648-85647944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 42
               

               
Conread position:
               
152-371
               

               
Cow position:
               
chr1:4581199-4581417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
16, 193
               

               
Conread position:
               
153-387
               

               
Cow position:
               
chr1:37886683-37886916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
64, 99
               

               
Conread position:
               
153-535
               

               
Cow position:
               
chr1:39068827-39069201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 145
               

               
Conread position:
               
153-535
               

               
Cow position:
               
chr1:81913026-81913402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 83
               

               
Conread position:
               
156-364
               

               
Cow position:
               
chr1:5155093-5155297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
157-535
               

               
Cow position:
               
chr1:52039761-52039387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 79
               

               
Conread position:
               
161-346
               

               
Cow position:
               
chr1:67646360-67646165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
163-535
               

               
Cow position:
               
chr1:82884276-82884635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
166-529
               

               
Cow position:
               
chr1:39509942-39510286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 132
               

               
Conread position:
               
166-535
               

               
Cow position:
               
chr1:80900235-80899858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
166-535
               

               
Cow position:
               
chr1:89350081-89349727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 249
               

               
Conread position:
               
167-305
               

               
Cow position:
               
chr1:808703-808846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
167-533
               

               
Cow position:
               
chr1:51968576-51968222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
141, 102
               

               
Conread position:
               
168-290
               

               
Cow position:
               
chr1:52429546-52429669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
168-348
               

               
Cow position:
               
chr1:86912554-86912373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
168-383
               

               
Cow position:
               
chr1:19226943-19227157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 129
               

               
Conread position:
               
168-534
               

               
Cow position:
               
chr1:31499739-31499378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
168-535
               

               
Cow position:
               
chr1:19481968-19482324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
168-535
               

               
Cow position:
               
chr1:64678808-64678447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 9
               

               
Conread position:
               
168-535
               

               
Cow position:
               
chr1:101634826-101634451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 112
               

               
Conread position:
               
169-334
               

               
Cow position:
               
chr1:92590304-92590143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
169-391
               

               
Cow position:
               
chr1:67688470-67688691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
46, 52
               

               
Conread position:
               
169-442
               

               
Cow position:
               
chr1:38401912-38401631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 76
               

               
Conread position:
               
169-443
               

               
Cow position:
               
chr1:3882346-3882627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
169-445
               

               
Cow position:
               
chr1:91874804-91875071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 48
               

               
Conread position:
               
169-493
               

               
Cow position:
               
chr1:62036915-62036593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 124
               

               
Conread position:
               
169-504
               

               
Cow position:
               
chr1:93044130-93043807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 87
               

               
Conread position:
               
169-533
               

               
Cow position:
               
chr1:41252297-41252651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 79
               

               
Conread position:
               
169-533
               

               
Cow position:
               
chr1:47233365-47233723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 146
               

               
Conread position:
               
169-533
               

               
Cow position:
               
chr1:85029067-85028713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 123
               

               
Conread position:
               
169-534
               

               
Cow position:
               
chr1:84255880-84255505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 305
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr1:74822564-74822201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 124
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr1:85162434-85162797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 180
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr1:98360291-98360664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
134, 49
               

               
Conread position:
               
171-349
               

               
Cow position:
               
chr1:98576158-98575979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 124
               

               
Conread position:
               
171-379
               

               
Cow position:
               
chr1:26427750-26427960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
46, 187
               

               
Conread position:
               
171-381
               

               
Cow position:
               
chr1:51044198-51044406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
171-430
               

               
Cow position:
               
chr1:30047492-30047740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
177, 76
               

               
Conread position:
               
171-445
               

               
Cow position:
               
chr1:75347735-75347456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
171-535
               

               
Cow position:
               
chr1:5135599-5135941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
171-535
               

               
Cow position:
               
chr1:81613500-81613135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 156
               

               
Conread position:
               
172-418
               

               
Cow position:
               
chr1:89230121-89230365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
172-533
               

               
Cow position:
               
chr1:22777434-22777799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
172-535
               

               
Cow position:
               
chr1:70380033-70380396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 101
               

               
Conread position:
               
172-535
               

               
Cow position:
               
chr1:88652746-88652381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 164
               

               
Conread position:
               
174-311
               

               
Cow position:
               
chr1:82556304-82556437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 64
               

               
Conread position:
               
175-392
               

               
Cow position:
               
chr1:65028641-65028418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
175-535
               

               
Cow position:
               
chr1:3720337-3720676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
176-408
               

               
Cow position:
               
chr1:5539171-5539404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
177-535
               

               
Cow position:
               
chr1:85774562-85774209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
179-425
               

               
Cow position:
               
chr1:71305783-71305547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
179-534
               

               
Cow position:
               
chr1:7350650-7350289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 5
               

               
Conread position:
               
179-534
               

               
Cow position:
               
chr1:96478802-96478446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
181-535
               

               
Cow position:
               
chr1:39426904-39427231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
36, 117
               

               
Conread position:
               
184-535
               

               
Cow position:
               
chr1:20205125-20204776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
190-415
               

               
Cow position:
               
chr1:5023670-5023890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 101
               

               
Conread position:
               
190-534
               

               
Cow position:
               
chr1:92963487-92963149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
194-524
               

               
Cow position:
               
chr1:26729801-26729489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
196-481
               

               
Cow position:
               
chr1:6788197-6788485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 272
               

               
Conread position:
               
196-523
               

               
Cow position:
               
chr1:76096524-76096201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
96, 107
               

               
Conread position:
               
196-535
               

               
Cow position:
               
chr1:74947032-74947367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
112, 91
               

               
Conread position:
               
201-361
               

               
Cow position:
               
chr1:61560642-61560807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
201-481
               

               
Cow position:
               
chr1:89498034-89497770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
206-340
               

               
Cow position:
               
chr1:80904843-80904709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 19
               

               
Conread position:
               
206-424
               

               
Cow position:
               
chr1:87440543-87440325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 139
               

               
Conread position:
               
206-535
               

               
Cow position:
               
chr1:4374261-4374588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 125
               

               
Conread position:
               
207-535
               

               
Cow position:
               
chr1:102647198-102647519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
9, 91
               

               
Conread position:
               
208-393
               

               
Cow position:
               
chr1:91369935-91370121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 61
               

               
Conread position:
               
209-418
               

               
Cow position:
               
chr1:40069311-40069105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
210-418
               

               
Cow position:
               
chr1:85301488-85301281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
100, 62
               

               
Conread position:
               
210-450
               

               
Cow position:
               
chr1:95179026-95178786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
7, 88
               

               
Conread position:
               
210-465
               

               
Cow position:
               
chr1:57420659-57420911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
7, 81
               

               
Conread position:
               
211-362
               

               
Cow position:
               
chr1:41695671-41695518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
214-535
               

               
Cow position:
               
chr1:1991351-1991678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
214-535
               

               
Cow position:
               
chr1:33996857-33997162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
297, 83
               

               
Conread position:
               
214-535
               

               
Cow position:
               
chr1:56229305-56229004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
27, 32
               

               
Conread position:
               
216-408
               

               
Cow position:
               
chr1:100569221-100569024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
92, 81
               

               
Conread position:
               
218-401
               

               
Cow position:
               
chr1:8984619-8984805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
47, 112
               

               
Conread position:
               
218-445
               

               
Cow position:
               
chr1:69127103-69127327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
130, 101
               

               
Conread position:
               
219-535
               

               
Cow position:
               
chr1:60907439-60907111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
223-525
               

               
Cow position:
               
chr1:83083066-83082762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
75, 103
               

               
Conread position:
               
224-445
               

               
Cow position:
               
chr1:89508606-89508392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
238-457
               

               
Cow position:
               
chr1:99039312-99039529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
259-393
               

               
Cow position:
               
chr1:22466486-22466623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
52, 107
               

               
Conread position:
               
260-533
               

               
Cow position:
               
chr1:29671500-29671772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 63
               

               
Conread position:
               
260-535
               

               
Cow position:
               
chr1:1403460-1403720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
88, 34
               

               
Conread position:
               
20-235
               

               
Cow position:
               
chr10:58065960-58066173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
26-340
               

               
Cow position:
               
chr10:23390093-23390404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
32-451
               

               
Cow position:
               
chr10:12486468-12486066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
27, 103
               

               
Conread position:
               
37-337
               

               
Cow position:
               
chr10:31803262-31803567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
38-533
               

               
Cow position:
               
chr10:49146719-49146254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 11
               

               
Conread position:
               
39-339
               

               
Cow position:
               
chr10:30746892-30746595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
41-504
               

               
Cow position:
               
chr10:35867803-35868250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 108
               

               
Conread position:
               
41-535
               

               
Cow position:
               
chr10:55123019-55122513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
42-521
               

               
Cow position:
               
chr10:40147418-40147902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
42-535
               

               
Cow position:
               
chr10:15868470-15867955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 136
               

               
Conread position:
               
42-535
               

               
Cow position:
               
chr10:62316784-62316287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
30, 291
               

               
Conread position:
               
43-535
               

               
Cow position:
               
chr10:63940977-63940497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
44-286
               

               
Cow position:
               
chr10:37174248-37174487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
158, 8
               

               
Conread position:
               
44-295
               

               
Cow position:
               
chr10:7835392-7835630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 16
               

               
Conread position:
               
44-535
               

               
Cow position:
               
chr10:35731318-35731806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 121
               

               
Conread position:
               
45-382
               

               
Cow position:
               
chr10:10750048-10750384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
47-434
               

               
Cow position:
               
chr10:4109783-4109409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
47-535
               

               
Cow position:
               
chr10:22616436-22616924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 64
               

               
Conread position:
               
48-387
               

               
Cow position:
               
chr10:64092555-64092881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
48-429
               

               
Cow position:
               
chr10:9656321-9656716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
66, 96
               

               
Conread position:
               
48-442
               

               
Cow position:
               
chr10:2613567-2613175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
50-274
               

               
Cow position:
               
chr10:59417038-59417258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
50-490
               

               
Cow position:
               
chr10:28841152-28840718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 14
               

               
Conread position:
               
50-535
               

               
Cow position:
               
chr10:13368557-13368070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 24
               

               
Conread position:
               
51-277
               

               
Cow position:
               
chr10:14188415-14188637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
52-339
               

               
Cow position:
               
chr10:11059957-11059671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 123
               

               
Conread position:
               
52-445
               

               
Cow position:
               
chr10:8161702-8161313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
59, 26
               

               
Conread position:
               
52-535
               

               
Cow position:
               
chr10:16644989-16645475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 22
               

               
Conread position:
               
53-535
               

               
Cow position:
               
chr10:16598886-16598408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
54-244
               

               
Cow position:
               
chr10:21348797-21348980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
161, 62
               

               
Conread position:
               
54-272
               

               
Cow position:
               
chr10:24971131-24971347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 94
               

               
Conread position:
               
54-299
               

               
Cow position:
               
chr10:47159404-47159167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
54-332
               

               
Cow position:
               
chr10:41676218-41676492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
54-360
               

               
Cow position:
               
chr10:66320882-66321192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 29
               

               
Conread position:
               
54-398
               

               
Cow position:
               
chr10:2899875-2899534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
54-533
               

               
Cow position:
               
chr10:52296694-52296219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 101
               

               
Conread position:
               
54-535
               

               
Cow position:
               
chr10:7366590-7367064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 89
               

               
Conread position:
               
54-535
               

               
Cow position:
               
chr10:27716641-27717119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
55-228
               

               
Cow position:
               
chr10:10104979-10104804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 87
               

               
Conread position:
               
55-228
               

               
Cow position:
               
chr10:31202571-31202399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 90
               

               
Conread position:
               
55-246
               

               
Cow position:
               
chr10:32829428-32829233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
55-249
               

               
Cow position:
               
chr10:61171454-61171260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
160, 106
               

               
Conread position:
               
55-265
               

               
Cow position:
               
chr10:55069404-55069195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
27, 92
               

               
Conread position:
               
55-307
               

               
Cow position:
               
chr10:30888671-30888928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 123
               

               
Conread position:
               
55-345
               

               
Cow position:
               
chr10:23346111-23346396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
55-345
               

               
Cow position:
               
chr10:60491066-60491351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
85, 56
               

               
Conread position:
               
55-359
               

               
Cow position:
               
chr10:46934584-46934893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
55-381
               

               
Cow position:
               
chr10:52881415-52881750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
32, 119
               

               
Conread position:
               
55-383
               

               
Cow position:
               
chr10:39124333-39123997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
34, 114
               

               
Conread position:
               
55-388
               

               
Cow position:
               
chr10:45294945-45295277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
46, 26
               

               
Conread position:
               
55-392
               

               
Cow position:
               
chr10:41132460-41132131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
55-402
               

               
Cow position:
               
chr10:42123392-42123746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
23, 140
               

               
Conread position:
               
55-445
               

               
Cow position:
               
chr10:66199509-66199896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 149
               

               
Conread position:
               
55-533
               

               
Cow position:
               
chr10:67442924-67443384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 91
               

               
Conread position:
               
55-534
               

               
Cow position:
               
chr10:24753334-24752878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 78
               

               
Conread position:
               
55-535
               

               
Cow position:
               
chr10:11966651-11967127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
55-535
               

               
Cow position:
               
chr10:46195976-46195513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
55-535
               

               
Cow position:
               
chr10:49846974-49846495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
56-311
               

               
Cow position:
               
chr10:43272846-43273105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
53, 26
               

               
Conread position:
               
56-392
               

               
Cow position:
               
chr10:27118767-27119108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 87
               

               
Conread position:
               
56-440
               

               
Cow position:
               
chr10:19191948-19191588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
56-448
               

               
Cow position:
               
chr10:21923322-21923717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
56-460
               

               
Cow position:
               
chr10:4184399-4183982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 246
               

               
Conread position:
               
56-461
               

               
Cow position:
               
chr10:7817318-7816897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 47
               

               
Conread position:
               
56-522
               

               
Cow position:
               
chr10:59572085-59571629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
56-535
               

               
Cow position:
               
chr10:6720094-6719621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
56-535
               

               
Cow position:
               
chr10:33666036-33665559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
56-535
               

               
Cow position:
               
chr10:34661134-34661596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 96
               

               
Conread position:
               
57-262
               

               
Cow position:
               
chr10:2984872-2985085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
57-308
               

               
Cow position:
               
chr10:23341083-23340849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
57-378
               

               
Cow position:
               
chr10:55577524-55577191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
57-427
               

               
Cow position:
               
chr10:69587488-69587856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 72
               

               
Conread position:
               
57-529
               

               
Cow position:
               
chr10:41268976-41268512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
57-534
               

               
Cow position:
               
chr10:31027447-31027920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
58-267
               

               
Cow position:
               
chr10:58650995-58651202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 97
               

               
Conread position:
               
58-315
               

               
Cow position:
               
chr10:1054583-1054346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 85
               

               
Conread position:
               
58-514
               

               
Cow position:
               
chr10:24312693-24313148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 91
               

               
Conread position:
               
58-535
               

               
Cow position:
               
chr10:5599805-5600275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 236
               

               
Conread position:
               
59-340
               

               
Cow position:
               
chr10:58043938-58044218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
59-533
               

               
Cow position:
               
chr10:34654920-34655390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
59-535
               

               
Cow position:
               
chr10:6490070-6489585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 6
               

               
Conread position:
               
60-319
               

               
Cow position:
               
chr10:60697439-60697691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
60-382
               

               
Cow position:
               
chr10:60446922-60446601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
60-393
               

               
Cow position:
               
chr10:763096-762777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
148, 5
               

               
Conread position:
               
60-533
               

               
Cow position:
               
chr10:6852454-6851993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 84
               

               
Conread position:
               
60-533
               

               
Cow position:
               
chr10:15817607-15818075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 5
               

               
Conread position:
               
61-235
               

               
Cow position:
               
chr10:47430016-47429842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
61-288
               

               
Cow position:
               
chr10:20485369-20485596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 81
               

               
Conread position:
               
62-228
               

               
Cow position:
               
chr10:13350019-13350186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
62-235
               

               
Cow position:
               
chr10:14668587-14668414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
62-240
               

               
Cow position:
               
chr10:61039309-61039130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
62-250
               

               
Cow position:
               
chr10:16641740-16641930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
62-252
               

               
Cow position:
               
chr10:57095014-57095201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
16, 105
               

               
Conread position:
               
62-268
               

               
Cow position:
               
chr10:37507960-37508164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
62-273
               

               
Cow position:
               
chr10:40999047-40998834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
49, 84
               

               
Conread position:
               
62-288
               

               
Cow position:
               
chr10:6516893-6516661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 183
               

               
Conread position:
               
62-311
               

               
Cow position:
               
chr10:35605230-35604991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
154, 16
               

               
Conread position:
               
62-347
               

               
Cow position:
               
chr10:1079549-1079262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 131
               

               
Conread position:
               
62-354
               

               
Cow position:
               
chr10:34646265-34646550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
62-453
               

               
Cow position:
               
chr10:35653858-35653460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
62-512
               

               
Cow position:
               
chr10:50182865-50183304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
62-522
               

               
Cow position:
               
chr10:56733215-56732779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
153, 17
               

               
Conread position:
               
62-533
               

               
Cow position:
               
chr10:13311934-13311453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 181
               

               
Conread position:
               
62-533
               

               
Cow position:
               
chr10:37235361-37235830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
62-533
               

               
Cow position:
               
chr10:49923176-49923632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 244
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr10:14947445-14946986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr10:34607752-34607277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr10:40107293-40106836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 137
               

               
Conread position:
               
62-535
               

               
Cow position:
               
chr10:51944548-51944082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
63-275
               

               
Cow position:
               
chr10:43459865-43460076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 100
               

               
Conread position:
               
63-304
               

               
Cow position:
               
chr10:38995426-38995176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
63-306
               

               
Cow position:
               
chr10:23310838-23311082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
63-312
               

               
Cow position:
               
chr10:37425949-37426194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
63-392
               

               
Cow position:
               
chr10:48679076-48679405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
48, 129
               

               
Conread position:
               
63-401
               

               
Cow position:
               
chr10:61921952-61922289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 85
               

               
Conread position:
               
63-457
               

               
Cow position:
               
chr10:10148839-10148443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 108
               

               
Conread position:
               
63-514
               

               
Cow position:
               
chr10:46151059-46150626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
63-528
               

               
Cow position:
               
chr10:18042375-18041911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 241
               

               
Conread position:
               
63-535
               

               
Cow position:
               
chr10:13586892-13586433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 52
               

               
Conread position:
               
63-535
               

               
Cow position:
               
chr10:23055904-23056359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 46
               

               
Conread position:
               
64-267
               

               
Cow position:
               
chr10:58148981-58149185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 110
               

               
Conread position:
               
64-282
               

               
Cow position:
               
chr10:27178672-27178465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
151, 15
               

               
Conread position:
               
64-294
               

               
Cow position:
               
chr10:5784064-5784291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
47, 133
               

               
Conread position:
               
64-383
               

               
Cow position:
               
chr10:4151745-4151414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
23, 246
               

               
Conread position:
               
64-437
               

               
Cow position:
               
chr10:63884133-63883766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
47, 201
               

               
Conread position:
               
64-535
               

               
Cow position:
               
chr10:25342772-25342306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
65-256
               

               
Cow position:
               
chr10:27136498-27136693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
65-274
               

               
Cow position:
               
chr10:28223404-28223191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 131
               

               
Conread position:
               
65-311
               

               
Cow position:
               
chr10:6242336-6242569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
153, 44
               

               
Conread position:
               
65-320
               

               
Cow position:
               
chr10:25822070-25822312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
65-357
               

               
Cow position:
               
chr10:55395792-55396084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
65-402
               

               
Cow position:
               
chr10:30369640-30369962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 78
               

               
Conread position:
               
65-454
               

               
Cow position:
               
chr10:45871705-45871313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
46, 105
               

               
Conread position:
               
65-495
               

               
Cow position:
               
chr10:64042271-64041842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
65-514
               

               
Cow position:
               
chr10:35792115-35791674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
65-529
               

               
Cow position:
               
chr10:59009952-59010414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
44, 64
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr10:39228350-39227876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 381
               

               
Conread position:
               
65-535
               

               
Cow position:
               
chr10:62353644-62353185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
66-248
               

               
Cow position:
               
chr10:48347890-48347709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
147, 99
               

               
Conread position:
               
66-267
               

               
Cow position:
               
chr10:25968350-25968152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
149, 15
               
66-290UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr10:38205531-38205749 (view  custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
39, 80
               
66-293UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:10634395-10634177 (view  custom track)

               
               
               
Alignm length:
230

               
               
               
Alignm identity:
165

               
               
               
Alignm E-value:
9e-30

               
               
               
Alignm gaps (pig, cow):
32, 13
66-330UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:5465618-5465884 (view  custom track)

               
               
               
Alignm length:
273

               
               
               
Alignm identity:
187

               
               
               
Alignm E-value:
6e-27

               
               
               
Alignm gaps (pig, cow):
45, 16

               
               
               Conread position:66-380
               
               
               Cow position:chr10:31004828-31005148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 135

               
               
               Conread position:66-407
               
               
               Cow position:chr10:6384711-6384379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:66-434
               
               
               Cow position:chr10:47690583-47690210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 238

               
               
               Conread position:66-451
               
               
               Cow position:chr10:10120374-10119998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 44

               
               
               Conread position:66-514
               
               
               Cow position:chr10:65071508-65071052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:66-518
               
               
               Cow position:chr10:12392422-12392867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:306
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:66-530
               
               
               Cow position:chr10:37529088-37529545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 78

               
               
               Conread position:66-533
               
               
               Cow position:chr10:31528154-31527715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:66-535
               
               
               Cow position:chr10:26209048-26209542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:67-382
               
               
               Cow position:chr10:46850050-46849737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-386
               
               
               Cow position:chr10:3276154-3275858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:67-427
               
               
               Cow position:chr10:37295490-37295839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 34

               
               
               Conread position:67-530
               
               
               Cow position:chr10:45337866-45337390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:320
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:68-333
               
               
               Cow position:chr10:43586102-43586368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:68-403
               
               
               Cow position:chr10:64227573-64227254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:68-494
               
               
               Cow position:chr10:50558748-50559166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 13

               
               
               Conread position:68-535
               
               
               Cow position:chr10:20553363-20552906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 79

               
               
               Conread position:68-535
               
               
               Cow position:chr10:31362032-31362490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:68-535
               
               
               Cow position:chr10:56079976-56080454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 141

               
               
               Conread position:68-535
               
               
               Cow position:chr10:60236916-60237394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:69-233
               
               
               Cow position:chr10:38329828-38329661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:70-340
               
               
               Cow position:chr10:24448041-24447775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):146, 39

               
               
               Conread position:70-529
               
               
               Cow position:chr10:47543251-47542816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:306
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):145, 12

               
               
               Conread position:71-332
               
               
               Cow position:chr10:2535743-2535487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):145, 38

               
               
               Conread position:71-366
               
               
               Cow position:chr10:61509766-61510056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:71-392
               
               
               Cow position:chr10:58451200-58451513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 67

               
               
               Conread position:71-530
               
               
               Cow position:chr10:37512059-37512524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 86

               
               
               Conread position:72-358
               
               
               Cow position:chr10:30216537-30216815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:72-519
               
               
               Cow position:chr10:60961126-60960676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 240

               
               
               Conread position:72-534
               
               
               Cow position:chr10:54504783-54504322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:73-256
               
               
               Cow position:chr10:37375566-37375753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:73-272
               
               
               Cow position:chr10:10829220-10829022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-311
               
               
               Cow position:chr10:23127807-23128045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:73-312
               
               
               Cow position:chr10:39622187-39622414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:73-320
               
               
               Cow position:chr10:11047026-11047268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:73-360
               
               
               Cow position:chr10:42230984-42230680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:73-383
               
               
               Cow position:chr10:46327869-46327556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:73-391
               
               
               Cow position:chr10:6664209-6663886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):144, 70

               
               
               Conread position:73-435
               
               
               Cow position:chr10:24756587-24756232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 70

               
               
               Conread position:73-494
               
               
               Cow position:chr10:37415962-37415546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:73-514
               
               
               Cow position:chr10:23576719-23576284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:73-514
               
               
               Cow position:chr10:48257097-48257538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:73-528
               
               
               Cow position:chr10:19372155-19372602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 72

               
               
               Conread position:73-533
               
               
               Cow position:chr10:37989469-37989030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):277, 116

               
               
               Conread position:73-533
               
               
               Cow position:chr10:38133302-38133762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:315
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:73-533
               
               
               Cow position:chr10:50109719-50110182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:73-535
               
               
               Cow position:chr10:2185535-2185051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:73-535
               
               
               Cow position:chr10:9575870-9576319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-535
               
               
               Cow position:chr10:14816982-14817444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:73-535
               
               
               Cow position:chr10:20095946-20095475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:73-535
               
               
               Cow position:chr10:31400720-31401179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 88

               
               
               Conread position:73-535
               
               
               Cow position:chr10:67626822-67627266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 80

               
               
               Conread position:74-445
               
               
               Cow position:chr10:35245775-35246134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:74-491
               
               
               Cow position:chr10:40163756-40164165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:74-514
               
               
               Cow position:chr10:39874963-39875404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 218

               
               
               Conread position:74-535
               
               
               Cow position:chr10:1424011-1423551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:75-274
               
               
               Cow position:chr10:19679282-19679075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:75-348
               
               
               Cow position:chr10:65582624-65582353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:75-382
               
               
               Cow position:chr10:24004286-24004601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:75-434
               
               
               Cow position:chr10:28395129-28395483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:75-455
               
               
               Cow position:chr10:45476043-45476419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:75-520
               
               
               Cow position:chr10:22390773-22390327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:75-529
               
               
               Cow position:chr10:37014813-37014364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 45

               
               
               Conread position:75-535
               
               
               Cow position:chr10:38421461-38421930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:318
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):26, 241

               
               
               Conread position:75-535
               
               
               Cow position:chr10:62286742-62286271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 358

               
               
               Conread position:76-528
               
               
               Cow position:chr10:1978496-1978937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:77-307
               
               
               Cow position:chr10:23071567-23071800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 121

               
               
               Conread position:77-386
               
               
               Cow position:chr10:37068246-37068548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:77-535
               
               
               Cow position:chr10:52569770-52569314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 116

               
               
               Conread position:79-296
               
               
               Cow position:chr10:49634238-49634022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:79-535
               
               
               Cow position:chr10:54731197-54730731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:81-290
               
               
               Cow position:chr10:16830213-16830425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 84

               
               
               Conread position:81-294
               
               
               Cow position:chr10:2857218-2857006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:81-310
               
               
               Cow position:chr10:55599983-55600215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:81-317
               
               
               Cow position:chr10:54776717-54776481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:81-361
               
               
               Cow position:chr10:22888647-22888926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):232, 79

               
               
               Conread position:81-505
               
               
               Cow position:chr10:47773891-47773484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 62

               
               
               Conread position:81-534
               
               
               Cow position:chr10:23506318-23506767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:81-535
               
               
               Cow position:chr10:57786507-57786056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:82-302
               
               
               Cow position:chr10:17150042-17149829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:82-344
               
               
               Cow position:chr10:59462298-59462042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:82-436
               
               
               Cow position:chr10:52695557-52695914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:82-530
               
               
               Cow position:chr10:24763667-24763203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 156

               
               
               Conread position:85-473
               
               
               Cow position:chr10:17022402-17022773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:85-529
               
               
               Cow position:chr10:30522897-30523331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:85-530
               
               
               Cow position:chr10:35802198-35802645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 7

               
               
               Conread position:87-535
               
               
               Cow position:chr10:17844930-17844488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:88-344
               
               
               Cow position:chr10:31366203-31366435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):214, 53

               
               
               Conread position:88-383
               
               
               Cow position:chr10:3364021-3364309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:88-535
               
               
               Cow position:chr10:21422001-21422435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 55

               
               
               Conread position:88-535
               
               
               Cow position:chr10:53674991-53674542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:89-533
               
               
               Cow position:chr10:57142041-57142498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 264

               
               
               Conread position:89-535
               
               
               Cow position:chr10:42746073-42745632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:89-535
               
               
               Cow position:chr10:56828157-56828601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:94-338
               
               
               Cow position:chr10:61426306-61426538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:98-535
               
               
               Cow position:chr10:52278875-52278440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 43

               
               
               Conread position:103-535
               
               
               Cow position:chr10:6505496-6505080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 6

               
               
               Conread position:104-345
               
               
               Cow position:chr10:53429026-53428783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:104-379
               
               
               Cow position:chr10:49942617-49942344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):113, 194

               
               
               Conread position:104-535
               
               
               Cow position:chr10:24096224-24096660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 66

               
               
               Conread position:104-535
               
               
               Cow position:chr10:29188207-29188641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:290
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:104-535
               
               
               Cow position:chr10:64876668-64876236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 86

               
               
               Conread position:110-442
               
               
               Cow position:chr10:48512939-48513275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):72, 80

               
               
               Conread position:112-294
               
               
               Cow position:chr10:32503568-32503384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:112-299
               
               
               Cow position:chr10:46886287-46886109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):105, 54

               
               
               Conread position:112-530
               
               
               Cow position:chr10:5151489-5151070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:121-535
               
               
               Cow position:chr10:53973973-53973568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 116

               
               
               Conread position:126-535
               
               
               Cow position:chr10:66211166-66211578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):90, 63

               
               
               Conread position:127-535
               
               
               Cow position:chr10:23886334-23886726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:133-354
               
               
               Cow position:chr10:41760200-41760426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:142-533
               
               
               Cow position:chr10:45770156-45769762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:143-535
               
               
               Cow position:chr10:28776462-28776092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 145

               
               
               Conread position:145-377
               
               
               Cow position:chr10:49947772-49948005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):26, 177

               
               
               Conread position:152-529
               
               
               Cow position:chr10:53336303-53336678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):56, 281

               
               
               Conread position:153-334
               
               
               Cow position:chr10:42451159-42451334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:153-432
               
               
               Cow position:chr10:19549387-19549670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 146

               
               
               Conread position:154-350
               
               
               Cow position:chr10:54819366-54819168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):26, 86

               
               
               Conread position:155-312
               
               
               Cow position:chr10:49253461-49253307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:157-535
               
               
               Cow position:chr10:77467-77109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:157-535
               
               
               Cow position:chr10:10135083-10134698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 166

               
               
               Conread position:159-534
               
               
               Cow position:chr10:51861985-51862343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 139

               
               
               Conread position:160-445
               
               
               Cow position:chr10:35778811-35779096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:162-339
               
               
               Cow position:chr10:37768395-37768215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:163-535
               
               
               Cow position:chr10:54477190-54476831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 38

               
               
               Conread position:167-320
               
               
               Cow position:chr10:49060632-49060783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:167-535
               
               
               Cow position:chr10:34174892-34175277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 288

               
               
               Conread position:168-383
               
               
               Cow position:chr10:45624072-45624282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):47, 83

               
               
               Conread position:168-397
               
               
               Cow position:chr10:25260332-25260107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):147, 37

               
               
               Conread position:168-397
               
               
               Cow position:chr10:31116758-31116539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:168-460
               
               
               Cow position:chr10:46492909-46493213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:168-520
               
               
               Cow position:chr10:11221787-11221444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 102

               
               
               Conread position:168-530
               
               
               Cow position:chr10:15318970-15318610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 144

               
               
               Conread position:168-535
               
               
               Cow position:chr10:13390963-13391334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:169-340
               
               
               Cow position:chr10:52827515-52827677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:169-341
               
               
               Cow position:chr10:17293348-17293523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-344
               
               
               Cow position:chr10:53405556-53405384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):48, 129

               
               
               Conread position:169-366
               
               
               Cow position:chr10:6199103-6198908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:169-393
               
               
               Cow position:chr10:33116868-33117093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):48, 62

               
               
               Conread position:169-395
               
               
               Cow position:chr10:22633542-22633769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):47, 124

               
               
               Conread position:169-398
               
               
               Cow position:chr10:69997717-69997950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:169-410
               
               
               Cow position:chr10:6543809-6543563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:169-416
               
               
               Cow position:chr10:30613910-30613673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:169-418
               
               
               Cow position:chr10:67288374-67288128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):46, 61

               
               
               Conread position:169-510
               
               
               Cow position:chr10:29252247-29251907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:169-520
               
               
               Cow position:chr10:37668073-37668425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:169-535
               
               
               Cow position:chr10:22527818-22528182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 120

               
               
               Conread position:169-535
               
               
               Cow position:chr10:24022200-24022559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):142, 15

               
               
               Conread position:169-535
               
               
               Cow position:chr10:41802809-41803176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 136

               
               
               Conread position:171-387
               
               
               Cow position:chr10:13316020-13315805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 174

               
               
               Conread position:171-415
               
               
               Cow position:chr10:16683725-16683978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 130

               
               
               Conread position:171-524
               
               
               Cow position:chr10:17863667-17863314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 182

               
               
               Conread position:171-533
               
               
               Cow position:chr10:20132447-20132806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:171-535
               
               
               Cow position:chr10:1488913-1488569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:171-535
               
               
               Cow position:chr10:3998991-3998628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 251

               
               
               Conread position:171-535
               
               
               Cow position:chr10:15462574-15462217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 263

               
               
               Conread position:171-535
               
               
               Cow position:chr10:53357977-53357616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 51

               
               
               Conread position:172-385
               
               
               Cow position:chr10:29379878-29380096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:172-520
               
               
               Cow position:chr10:27828402-27828075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:177-371
               
               
               Cow position:chr10:58935094-58935289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):129, 54

               
               
               Conread position:177-512
               
               
               Cow position:chr10:8923355-8923017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 282

               
               
               Conread position:177-530
               
               
               Cow position:chr10:2449426-2449076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 176

               
               
               Conread position:177-530
               
               
               Cow position:chr10:41941489-41941856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 284

               
               
               Conread position:177-535
               
               
               Cow position:chr10:38014441-38014092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:178-339
               
               
               Cow position:chr10:48282477-48282641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:187-527
               
               
               Cow position:chr10:805255-804922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:190-533
               
               
               Cow position:chr10:6252434-6252763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):27, 153

               
               
               Conread position:193-535
               
               
               Cow position:chr10:59588116-59588446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):22, 97

               
               
               Conread position:197-495
               
               
               Cow position:chr10:13163392-13163687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):5, 97

               
               
               Conread position:198-535
               
               
               Cow position:chr10:24744600-24744277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 145

               
               
               Conread position:207-501
               
               
               Cow position:chr10:32029789-32030070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):141, 9

               
               
               Conread position:207-535
               
               
               Cow position:chr10:1428085-1427762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 145

               
               
               Conread position:209-534
               
               
               Cow position:chr10:58399238-58399555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):86, 79

               
               
               Conread position:209-535
               
               
               Cow position:chr10:65072073-65072391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):58, 97

               
               
               Conread position:210-454
               
               
               Cow position:chr10:45679060-45678813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):7, 93

               
               
               Conread position:212-523
               
               
               Cow position:chr10:29816642-29816321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 150

               
               
               Conread position:212-535
               
               
               Cow position:chr10:29070196-29069875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):134, 82

               
               
               Conread position:214-535
               
               
               Cow position:chr10:34430188-34430495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):169, 83

               
               
               Conread position:220-525
               
               
               Cow position:chr10:19655937-19655638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):81, 100

               
               
               Conread position:238-395
               
               
               Cow position:chr10:59159082-59159242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 65

               
               
               Conread position:244-535
               
               
               Cow position:chr10:55580266-55580543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 93

               
               
               Conread position:245-514
               
               
               Cow position:chr10:17584030-17584288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 142

               
               
               Conread position:260-402
               
               
               Cow position:chr10:17602590-17602727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 83

               
               
               Conread position:261-534
               
               
               Cow position:chr10:19678864-19678588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 195

               
               
               Conread position:27-529
               
               
               Cow position:chr11:31413689-31413181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:31-528
               
               
               Cow position:chr11:30192406-30191901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:32-250
               
               
               Cow position:chr11:5264322-5264104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:38-533
               
               
               Cow position:chr11:1848941-1849437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:39-349
               
               
               Cow position:chr11:3715456-3715145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):118, 7

               
               
               Conread position:39-520
               
               
               Cow position:chr11:2917372-2917837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:41-535
               
               
               Cow position:chr11:33293562-33294067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:43-533
               
               
               Cow position:chr11:33349487-33349975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 38

               
               
               Conread position:43-534
               
               
               Cow position:chr11:67804956-67804478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:333
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:43-535
               
               
               Cow position:chr11:15632345-15632831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:44-267
               
               
               Cow position:chr11:41979985-41980214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:46-396
               
               
               Cow position:chr11:69978178-69977838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:47-350
               
               
               Cow position:chr11:35665347-35665654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:47-361
               
               
               Cow position:chr11:31228169-31227864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:47-412
               
               
               Cow position:chr11:3175880-3175535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:47-424
               
               
               Cow position:chr11:80556430-80556053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:48-535
               
               
               Cow position:chr11:46747650-46748144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 17

               
               
               Conread position:49-310
               
               
               Cow position:chr11:68883933-68883664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):29, 148

               
               
               Conread position:49-313
               
               
               Cow position:chr11:67312994-67312725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):94, 11

               
               
               Conread position:50-452
               
               
               Cow position:chr11:13592951-13592541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 151

               
               
               Conread position:50-495
               
               
               Cow position:chr11:27404861-27405303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:51-379
               
               
               Cow position:chr11:3740173-3739831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):60, 153

               
               
               Conread position:51-401
               
               
               Cow position:chr11:40794135-40794498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 129

               
               
               Conread position:51-472
               
               
               Cow position:chr11:15772506-15772934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:51-509
               
               
               Cow position:chr11:2084352-2083899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 30

               
               
               Conread position:51-535
               
               
               Cow position:chr11:27248697-27248217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:52-493
               
               
               Cow position:chr11:33347991-33348417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 59

               
               
               Conread position:52-534
               
               
               Cow position:chr11:15504314-15503826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:52-535
               
               
               Cow position:chr11:15285412-15285893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 74

               
               
               Conread position:54-283
               
               
               Cow position:chr11:32782666-32782909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:54-412
               
               
               Cow position:chr11:63435734-63435362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 158

               
               
               Conread position:54-535
               
               
               Cow position:chr11:8496237-8495762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:325
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:55-304
               
               
               Cow position:chr11:30172503-30172263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:55-360
               
               
               Cow position:chr11:16315076-16314769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:55-392
               
               
               Cow position:chr11:13863897-13864234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):14, 7

               
               
               Conread position:55-395
               
               
               Cow position:chr11:70206519-70206184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:55-408
               
               
               Cow position:chr11:5602661-5602298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 139

               
               
               Conread position:55-448
               
               
               Cow position:chr11:32254012-32254414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):56, 7

               
               
               Conread position:55-482
               
               
               Cow position:chr11:14470566-14470145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:55-494
               
               
               Cow position:chr11:25620183-25620629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 97

               
               
               Conread position:55-511
               
               
               Cow position:chr11:2907327-2907776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:55-533
               
               
               Cow position:chr11:1625015-1625488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 141

               
               
               Conread position:55-533
               
               
               Cow position:chr11:10301998-10302462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:315
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 136

               
               
               Conread position:55-533
               
               
               Cow position:chr11:76369323-76369795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:324
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:55-534
               
               
               Cow position:chr11:84385436-84385918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 10

               
               
               Conread position:55-535
               
               
               Cow position:chr11:48672918-48672433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:56-295
               
               
               Cow position:chr11:30894800-30895040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:56-346
               
               
               Cow position:chr11:8437484-8437777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 240

               
               
               Conread position:56-352
               
               
               Cow position:chr11:36914363-36914661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:56-390
               
               
               Cow position:chr11:62742446-62742766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 6

               
               
               Conread position:56-396
               
               
               Cow position:chr11:67615050-67615382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 25

               
               
               Conread position:56-416
               
               
               Cow position:chr11:2575705-2576063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:56-438
               
               
               Cow position:chr11:7874344-7873966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:56-534
               
               
               Cow position:chr11:81300419-81300887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:56-535
               
               
               Cow position:chr11:36182895-36182413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 65

               
               
               Conread position:57-277
               
               
               Cow position:chr11:56115141-56114919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 100

               
               
               Conread position:57-324
               
               
               Cow position:chr11:68554890-68555160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:57-354
               
               
               Cow position:chr11:55911444-55911732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:57-402
               
               
               Cow position:chr11:32126816-32126465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:57-445
               
               
               Cow position:chr11:48383730-48383341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:57-495
               
               
               Cow position:chr11:5961510-5961078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:57-506
               
               
               Cow position:chr11:62239944-62239504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:57-530
               
               
               Cow position:chr11:62663042-62663503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:57-534
               
               
               Cow position:chr11:17889523-17889997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 149

               
               
               Conread position:57-535
               
               
               Cow position:chr11:14649109-14649588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:57-535
               
               
               Cow position:chr11:46329703-46329224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:333
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:58-314
               
               
               Cow position:chr11:20205656-20205906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 100

               
               
               Conread position:58-495
               
               
               Cow position:chr11:62620584-62620150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 119

               
               
               Conread position:59-299
               
               
               Cow position:chr11:897865-897632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):158, 82

               
               
               Conread position:59-345
               
               
               Cow position:chr11:48086119-48085829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:59-422
               
               
               Cow position:chr11:48296228-48295867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 84

               
               
               Conread position:59-535
               
               
               Cow position:chr11:64044418-64043973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 85

               
               
               Conread position:60-261
               
               
               Cow position:chr11:42206617-42206418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:60-371
               
               
               Cow position:chr11:39060404-39060715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 103

               
               
               Conread position:60-528
               
               
               Cow position:chr11:19487277-19487744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:313
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):17, 140

               
               
               Conread position:60-533
               
               
               Cow position:chr11:53773885-53773399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 113

               
               
               Conread position:60-535
               
               
               Cow position:chr11:44032206-44031724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:61-524
               
               
               Cow position:chr11:27747117-27746653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 85

               
               
               Conread position:62-245
               
               
               Cow position:chr11:23278765-23278952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 71

               
               
               Conread position:62-256
               
               
               Cow position:chr11:80007864-80008066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 131

               
               
               Conread position:62-315
               
               
               Cow position:chr11:62230384-62230124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:62-392
               
               
               Cow position:chr11:76653220-76652887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 132

               
               
               Conread position:62-396
               
               
               Cow position:chr11:40395638-40395298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):20, 94

               
               
               Conread position:62-406
               
               
               Cow position:chr11:261062-261407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:62-430
               
               
               Cow position:chr11:76890239-76889875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:62-444
               
               
               Cow position:chr11:64077302-64077687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:62-521
               
               
               Cow position:chr11:83398104-83397643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:62-529
               
               
               Cow position:chr11:55334117-55333639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 247

               
               
               Conread position:62-535
               
               
               Cow position:chr11:10992453-10992004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 18

               
               
               Conread position:62-535
               
               
               Cow position:chr11:18699068-18698599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:62-535
               
               
               Cow position:chr11:62490619-62490158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 106

               
               
               Conread position:63-334
               
               
               Cow position:chr11:30867374-30867105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:63-379
               
               
               Cow position:chr11:42067064-42066738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):11, 105

               
               
               Conread position:63-386
               
               
               Cow position:chr11:41293607-41293948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):48, 250

               
               
               Conread position:63-401
               
               
               Cow position:chr11:63998892-63999234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 209

               
               
               Conread position:63-453
               
               
               Cow position:chr11:15339250-15338877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 18

               
               
               Conread position:63-504
               
               
               Cow position:chr11:15017254-15016802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:63-533
               
               
               Cow position:chr11:41367-40908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 48

               
               
               Conread position:63-535
               
               
               Cow position:chr11:38236440-38235968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 18

               
               
               Conread position:63-535
               
               
               Cow position:chr11:52297026-52297499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:63-535
               
               
               Cow position:chr11:64029071-64029531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:64-245
               
               
               Cow position:chr11:74839799-74839623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):149, 77

               
               
               Conread position:64-286
               
               
               Cow position:chr11:2900522-2900749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 46

               
               
               Conread position:64-456
               
               
               Cow position:chr11:35724166-35723780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):45, 131

               
               
               Conread position:64-504
               
               
               Cow position:chr11:42884587-42885014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:298
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:64-512
               
               
               Cow position:chr11:40792501-40792945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:64-516
               
               
               Cow position:chr11:75479827-75480283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:310
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:64-535
               
               
               Cow position:chr11:258982-259454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:65-288
               
               
               Cow position:chr11:71022197-71021970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:65-290
               
               
               Cow position:chr11:3896503-3896731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 198

               
               
               Conread position:65-305
               
               
               Cow position:chr11:56311404-56311643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 121

               
               
               Conread position:65-387
               
               
               Cow position:chr11:67614732-67615059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:65-392
               
               
               Cow position:chr11:7460430-7460750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:65-454
               
               
               Cow position:chr11:19591800-19592192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 121

               
               
               Conread position:65-529
               
               
               Cow position:chr11:29916741-29916269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:328
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):40, 131

               
               
               Conread position:65-529
               
               
               Cow position:chr11:85723889-85723432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 132

               
               
               Conread position:65-533
               
               
               Cow position:chr11:74316901-74316433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:65-535
               
               
               Cow position:chr11:66734025-66733560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:66-275
               
               
               Cow position:chr11:48315205-48315414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):42, 88

               
               
               Conread position:66-284
               
               
               Cow position:chr11:63165456-63165673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:66-362
               
               
               Cow position:chr11:30494182-30493893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):149, 74

               
               
               Conread position:66-392
               
               
               Cow position:chr11:62789321-62788993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 78

               
               
               Conread position:66-445
               
               
               Cow position:chr11:34646789-34646403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 284

               
               
               Conread position:66-482
               
               
               Cow position:chr11:2925112-2925512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:66-513
               
               
               Cow position:chr11:35153627-35154080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:66-533
               
               
               Cow position:chr11:80564493-80564031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 126

               
               
               Conread position:66-534
               
               
               Cow position:chr11:6399872-6400346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:67-227
               
               
               Cow position:chr11:65431709-65431549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:67-359
               
               
               Cow position:chr11:46922694-46922999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:67-409
               
               
               Cow position:chr11:18852097-18851766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:67-413
               
               
               Cow position:chr11:5201454-5201806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:67-429
               
               
               Cow position:chr11:59862401-59862040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-432
               
               
               Cow position:chr11:30830430-30830791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 42

               
               
               Conread position:67-494
               
               
               Cow position:chr11:36112602-36112184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):148, 37

               
               
               Conread position:67-535
               
               
               Cow position:chr11:1380868-1380419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:67-535
               
               
               Cow position:chr11:3720446-3719976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:68-348
               
               
               Cow position:chr11:58594196-58594477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:68-376
               
               
               Cow position:chr11:375651-375335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:68-453
               
               
               Cow position:chr11:6245512-6245116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:68-534
               
               
               Cow position:chr11:4207503-4207024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 32

               
               
               Conread position:69-348
               
               
               Cow position:chr11:17676184-17676460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:69-535
               
               
               Cow position:chr11:80923136-80923611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 13

               
               
               Conread position:70-535
               
               
               Cow position:chr11:44223071-44222624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 95

               
               
               Conread position:71-240
               
               
               Cow position:chr11:54872572-54872742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:71-247
               
               
               Cow position:chr11:30485847-30485662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:71-367
               
               
               Cow position:chr11:29659748-29659452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:71-492
               
               
               Cow position:chr11:21728100-21728499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:71-529
               
               
               Cow position:chr11:17859965-17860423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:71-535
               
               
               Cow position:chr11:50152624-50153093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:73-249
               
               
               Cow position:chr11:80296672-80296844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 68

               
               
               Conread position:73-306
               
               
               Cow position:chr11:18924934-18924697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:73-318
               
               
               Cow position:chr11:41437998-41438246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 120

               
               
               Conread position:73-328
               
               
               Cow position:chr11:48248012-48248286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:73-336
               
               
               Cow position:chr11:29699500-29699779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 201

               
               
               Conread position:73-348
               
               
               Cow position:chr11:19946608-19946346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:73-382
               
               
               Cow position:chr11:49872700-49873013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-398
               
               
               Cow position:chr11:70978548-70978868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:73-412
               
               
               Cow position:chr11:51729461-51729133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:73-461
               
               
               Cow position:chr11:11558355-11557963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 86

               
               
               Conread position:73-495
               
               
               Cow position:chr11:11469472-11469868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 10

               
               
               Conread position:73-512
               
               
               Cow position:chr11:20238863-20238421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-533
               
               
               Cow position:chr11:11125852-11125389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:73-535
               
               
               Cow position:chr11:13042961-13043412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-535
               
               
               Cow position:chr11:20762039-20761570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 155

               
               
               Conread position:73-535
               
               
               Cow position:chr11:40818446-40818920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:73-535
               
               
               Cow position:chr11:83043180-83043636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 80

               
               
               Conread position:74-339
               
               
               Cow position:chr11:17721615-17721885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:75-334
               
               
               Cow position:chr11:4636990-4637249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:75-367
               
               
               Cow position:chr11:3908429-3908718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:75-382
               
               
               Cow position:chr11:83032862-83032558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:75-533
               
               
               Cow position:chr11:83323762-83323303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:75-535
               
               
               Cow position:chr11:4732529-4732063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 232

               
               
               Conread position:76-357
               
               
               Cow position:chr11:82740676-82740408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):141, 60

               
               
               Conread position:76-535
               
               
               Cow position:chr11:6233694-6234154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 225

               
               
               Conread position:76-535
               
               
               Cow position:chr11:35580445-35579978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:77-360
               
               
               Cow position:chr11:73573830-73573543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:77-525
               
               
               Cow position:chr11:24602141-24601704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 67

               
               
               Conread position:78-417
               
               
               Cow position:chr11:45435257-45434926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:78-418
               
               
               Cow position:chr11:42296445-42296779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 55

               
               
               Conread position:79-355
               
               
               Cow position:chr11:42159881-42160159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:79-535
               
               
               Cow position:chr11:17036351-17036827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:80-340
               
               
               Cow position:chr11:72292741-72292461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:80-535
               
               
               Cow position:chr11:45646418-45646866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:81-306
               
               
               Cow position:chr11:21886009-21885784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 88

               
               
               Conread position:81-315
               
               
               Cow position:chr11:18447322-18447548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:81-352
               
               
               Cow position:chr11:62812773-62813045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):19, 65

               
               
               Conread position:81-354
               
               
               Cow position:chr11:33409087-33409355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):136, 86

               
               
               Conread position:81-459
               
               
               Cow position:chr11:5486195-5485804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:81-535
               
               
               Cow position:chr11:6594050-6594523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:328
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):30, 123

               
               
               Conread position:82-262
               
               
               Cow position:chr11:6255831-6256007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:82-286
               
               
               Cow position:chr11:30842847-30843047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:82-382
               
               
               Cow position:chr11:40608415-40608722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 71

               
               
               Conread position:82-501
               
               
               Cow position:chr11:29960470-29960063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:84-402
               
               
               Cow position:chr11:47755204-47755530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 179

               
               
               Conread position:85-397
               
               
               Cow position:chr11:53463117-53462802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):24, 83

               
               
               Conread position:85-423
               
               
               Cow position:chr11:81134994-81135328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:86-334
               
               
               Cow position:chr11:36920404-36920655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):120, 25

               
               
               Conread position:87-400
               
               
               Cow position:chr11:64009899-64009575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:88-250
               
               
               Cow position:chr11:15278846-15279005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):127, 53

               
               
               Conread position:89-379
               
               
               Cow position:chr11:8462176-8461893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 103

               
               
               Conread position:89-432
               
               
               Cow position:chr11:28993577-28993904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:89-515
               
               
               Cow position:chr11:45872139-45872573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 103

               
               
               Conread position:89-517
               
               
               Cow position:chr11:77319583-77319167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:89-535
               
               
               Cow position:chr11:8524947-8525381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 57

               
               
               Conread position:90-396
               
               
               Cow position:chr11:47772212-47772531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 285

               
               
               Conread position:91-535
               
               
               Cow position:chr11:4674275-4674726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:93-436
               
               
               Cow position:chr11:38670857-38670503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:93-524
               
               
               Cow position:chr11:34121362-34120929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 59

               
               
               Conread position:94-348
               
               
               Cow position:chr11:24599232-24599479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):204, 43

               
               
               Conread position:97-316
               
               
               Cow position:chr11:75090056-75090276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:97-412
               
               
               Cow position:chr11:56187765-56187464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 11

               
               
               Conread position:100-332
               
               
               Cow position:chr11:953515-953282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 90

               
               
               Conread position:104-382
               
               
               Cow position:chr11:35791667-35791937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 60

               
               
               Conread position:104-454
               
               
               Cow position:chr11:5075077-5075417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):113, 36

               
               
               Conread position:104-503
               
               
               Cow position:chr11:57724670-57725071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:104-530
               
               
               Cow position:chr11:287181-287604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:285
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:104-534
               
               
               Cow position:chr11:3780262-3780699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:104-535
               
               
               Cow position:chr11:13191389-13190944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:104-535
               
               
               Cow position:chr11:39499508-39499101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 48

               
               
               Conread position:109-338
               
               
               Cow position:chr11:31410732-31410963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):107, 43

               
               
               Conread position:109-398
               
               
               Cow position:chr11:19232802-19233086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 225

               
               
               Conread position:133-522
               
               
               Cow position:chr11:70836252-70836630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:133-533
               
               
               Cow position:chr11:44234483-44234085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 249

               
               
               Conread position:133-535
               
               
               Cow position:chr11:377517-377926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:140-328
               
               
               Cow position:chr11:10363268-10363458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 50

               
               
               Conread position:140-339
               
               
               Cow position:chr11:28168304-28168505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:140-339
               
               
               Cow position:chr11:79018938-79019140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 166

               
               
               Conread position:140-438
               
               
               Cow position:chr11:26845474-26845762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:141-489
               
               
               Cow position:chr11:66424762-66425119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:143-535
               
               
               Cow position:chr11:35684384-35684774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 155

               
               
               Conread position:146-348
               
               
               Cow position:chr11:35803251-35803044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:152-437
               
               
               Cow position:chr11:5570-5286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 146

               
               
               Conread position:155-516
               
               
               Cow position:chr11:16342125-16342497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 249

               
               
               Conread position:155-535
               
               
               Cow position:chr11:62150790-62151157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 83

               
               
               Conread position:156-461
               
               
               Cow position:chr11:17661186-17660889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 82

               
               
               Conread position:158-535
               
               
               Cow position:chr11:18588485-18588856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:162-535
               
               
               Cow position:chr11:8428608-8428219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 275

               
               
               Conread position:163-402
               
               
               Cow position:chr11:63917381-63917612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):93, 135

               
               
               Conread position:166-305
               
               
               Cow position:chr11:47882896-47882756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:166-380
               
               
               Cow position:chr11:33345538-33345320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:167-316
               
               
               Cow position:chr11:34413248-34413397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 131

               
               
               Conread position:167-381
               
               
               Cow position:chr11:6194296-6194081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:167-397
               
               
               Cow position:chr11:65767291-65767057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:167-529
               
               
               Cow position:chr11:20602318-20601970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 132

               
               
               Conread position:167-530
               
               
               Cow position:chr11:50778459-50778099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 113

               
               
               Conread position:167-530
               
               
               Cow position:chr11:83230309-83230655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:167-533
               
               
               Cow position:chr11:11232364-11232728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 70

               
               
               Conread position:167-535
               
               
               Cow position:chr11:44636662-44637036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 302

               
               
               Conread position:168-299
               
               
               Cow position:chr11:18915117-18914984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:168-426
               
               
               Cow position:chr11:75874665-75874921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:168-504
               
               
               Cow position:chr11:47899359-47899033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 129

               
               
               Conread position:168-528
               
               
               Cow position:chr11:62573917-62574267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 121

               
               
               Conread position:168-530
               
               
               Cow position:chr11:13061144-13061494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:168-533
               
               
               Cow position:chr11:80819914-80820272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 65

               
               
               Conread position:168-534
               
               
               Cow position:chr11:63469966-63469609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 212

               
               
               Conread position:168-535
               
               
               Cow position:chr11:61427683-61427339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:169-412
               
               
               Cow position:chr11:13075722-13075946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:169-425
               
               
               Cow position:chr11:55494769-55494514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 247

               
               
               Conread position:169-440
               
               
               Cow position:chr11:30955090-30954815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:169-461
               
               
               Cow position:chr11:23586728-23586429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-533
               
               
               Cow position:chr11:53553305-53552983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:169-534
               
               
               Cow position:chr11:30355148-30354793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 120

               
               
               Conread position:169-535
               
               
               Cow position:chr11:28644177-28643806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 264

               
               
               Conread position:169-535
               
               
               Cow position:chr11:48272290-48271920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 283

               
               
               Conread position:169-535
               
               
               Cow position:chr11:59702580-59702209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 298

               
               
               Conread position:169-535
               
               
               Cow position:chr11:64090008-64090362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:169-535
               
               
               Cow position:chr11:76114732-76114379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 36

               
               
               Conread position:170-299
               
               
               Cow position:chr11:16801868-16801993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 86

               
               
               Conread position:170-329
               
               
               Cow position:chr11:3790931-3790764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:170-535
               
               
               Cow position:chr11:69119382-69119024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 174

               
               
               Conread position:171-392
               
               
               Cow position:chr11:46953035-46952814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 122

               
               
               Conread position:171-392
               
               
               Cow position:chr11:80537574-80537351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:171-444
               
               
               Cow position:chr11:61958657-61958934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:171-535
               
               
               Cow position:chr11:36987037-36986686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):46, 115

               
               
               Conread position:172-330
               
               
               Cow position:chr11:30484006-30483845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:172-377
               
               
               Cow position:chr11:84490412-84490610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:172-523
               
               
               Cow position:chr11:23128453-23128803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 247

               
               
               Conread position:176-535
               
               
               Cow position:chr11:439581-439934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:177-316
               
               
               Cow position:chr11:36328953-36329091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 121

               
               
               Conread position:177-454
               
               
               Cow position:chr11:71501050-71501326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 127

               
               
               Conread position:177-524
               
               
               Cow position:chr11:47545213-47544863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:183-436
               
               
               Cow position:chr11:47004424-47004171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 123

               
               
               Conread position:184-520
               
               
               Cow position:chr11:81162358-81162691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 192

               
               
               Conread position:187-441
               
               
               Cow position:chr11:82796217-82796470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):30, 139

               
               
               Conread position:189-530
               
               
               Cow position:chr11:24937735-24937392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 203

               
               
               Conread position:190-364
               
               
               Cow position:chr11:75965583-75965757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:190-401
               
               
               Cow position:chr11:69392631-69392412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:190-457
               
               
               Cow position:chr11:67550309-67550566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 99

               
               
               Conread position:190-535
               
               
               Cow position:chr11:10620259-10620601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 153

               
               
               Conread position:195-340
               
               
               Cow position:chr11:54218778-54218635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:197-535
               
               
               Cow position:chr11:54334390-54334059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:198-314
               
               
               Cow position:chr11:16842923-16843040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:198-366
               
               
               Cow position:chr11:46592526-46592357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:201-504
               
               
               Cow position:chr11:30925214-30924909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):17, 161

               
               
               Conread position:201-535
               
               
               Cow position:chr11:4323416-4323091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 223

               
               
               Conread position:202-535
               
               
               Cow position:chr11:44575688-44576012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 100

               
               
               Conread position:203-461
               
               
               Cow position:chr11:38874346-38874608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:207-525
               
               
               Cow position:chr11:30911952-30912257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:210-456
               
               
               Cow position:chr11:79960736-79960988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:212-535
               
               
               Cow position:chr11:16910313-16910644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:214-535
               
               
               Cow position:chr11:63156874-63157190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):134, 55

               
               
               Conread position:216-382
               
               
               Cow position:chr11:485587-485756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 114

               
               
               Conread position:219-522
               
               
               Cow position:chr11:14094381-14094685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):82, 176

               
               
               Conread position:223-489
               
               
               Cow position:chr11:18591399-18591662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 74

               
               
               Conread position:223-535
               
               
               Cow position:chr11:8339371-8339680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 243

               
               
               Conread position:223-535
               
               
               Cow position:chr11:62155673-62155355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):78, 244

               
               
               Conread position:223-535
               
               
               Cow position:chr11:65431089-65430789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:226-535
               
               
               Cow position:chr11:6154440-6154137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:229-535
               
               
               Cow position:chr11:42792944-42793246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 67

               
               
               Conread position:237-525
               
               
               Cow position:chr11:16251223-16251515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 187

               
               
               Conread position:239-402
               
               
               Cow position:chr11:33824869-33825036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):61, 72

               
               
               Conread position:246-535
               
               
               Cow position:chr11:4412010-4412295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 47

               
               
               Conread position:32-394
               
               
               Cow position:chr12:24032692-24032343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:34-262
               
               
               Cow position:chr12:25814359-25814128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:37-535
               
               
               Cow position:chr12:6241525-6241014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 360

               
               
               Conread position:40-535
               
               
               Cow position:chr12:6410539-6411023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:42-228
               
               
               Cow position:chr12:27663792-27663985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):10, 130

               
               
               Conread position:42-310
               
               
               Cow position:chr12:12233079-12232810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:43-247
               
               
               Cow position:chr12:4014228-4014443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:45-249
               
               
               Cow position:chr12:583309-583522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:45-533
               
               
               Cow position:chr12:39486620-39486137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:45-535
               
               
               Cow position:chr12:35310489-35310968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 150

               
               
               Conread position:46-378
               
               
               Cow position:chr12:29674945-29675279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 136

               
               
               Conread position:47-465
               
               
               Cow position:chr12:33129444-33129035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:47-535
               
               
               Cow position:chr12:30745906-30745418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:49-456
               
               
               Cow position:chr12:25027567-25028002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):60, 111

               
               
               Conread position:49-535
               
               
               Cow position:chr12:6468885-6469338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:322
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):60, 39

               
               
               Conread position:50-302
               
               
               Cow position:chr12:36261882-36261624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:50-317
               
               
               Cow position:chr12:5839475-5839738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):153, 37

               
               
               Conread position:50-528
               
               
               Cow position:chr12:15089699-15089204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:51-215
               
               
               Cow position:chr12:15151688-15151846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:51-256
               
               
               Cow position:chr12:38009897-38010106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:51-391
               
               
               Cow position:chr12:13988562-13988216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):25, 94

               
               
               Conread position:54-228
               
               
               Cow position:chr12:18978866-18978696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):159, 8

               
               
               Conread position:54-283
               
               
               Cow position:chr12:23714856-23714628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):57, 84

               
               
               Conread position:54-348
               
               
               Cow position:chr12:18582816-18583103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 28

               
               
               Conread position:54-530
               
               
               Cow position:chr12:15938087-15938557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 25

               
               
               Conread position:55-226
               
               
               Cow position:chr12:8711166-8710994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:55-278
               
               
               Cow position:chr12:29731492-29731273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-304
               
               
               Cow position:chr12:6206514-6206266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:55-318
               
               
               Cow position:chr12:5135414-5135152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:55-350
               
               
               Cow position:chr12:39746592-39746294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:55-354
               
               
               Cow position:chr12:21780351-21780046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:55-419
               
               
               Cow position:chr12:40360872-40360502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:55-434
               
               
               Cow position:chr12:7299280-7299666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 40

               
               
               Conread position:55-515
               
               
               Cow position:chr12:15784105-15783659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:301
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-533
               
               
               Cow position:chr12:18123849-18123394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 7

               
               
               Conread position:56-242
               
               
               Cow position:chr12:17254326-17254136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:56-253
               
               
               Cow position:chr12:38679230-38679033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 88

               
               
               Conread position:56-382
               
               
               Cow position:chr12:19258456-19258133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:56-533
               
               
               Cow position:chr12:11057048-11056583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 52

               
               
               Conread position:56-533
               
               
               Cow position:chr12:30590951-30590484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 80

               
               
               Conread position:56-535
               
               
               Cow position:chr12:19508384-19508867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:57-327
               
               
               Cow position:chr12:27176818-27176545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):125, 25

               
               
               Conread position:58-347
               
               
               Cow position:chr12:11660108-11659816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 163

               
               
               Conread position:58-354
               
               
               Cow position:chr12:26749769-26750077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):20, 136

               
               
               Conread position:58-535
               
               
               Cow position:chr12:18420741-18421221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 143

               
               
               Conread position:60-233
               
               
               Cow position:chr12:2835584-2835407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):8, 109

               
               
               Conread position:60-276
               
               
               Cow position:chr12:2964224-2964011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 96

               
               
               Conread position:60-294
               
               
               Cow position:chr12:43974471-43974236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 138

               
               
               Conread position:60-367
               
               
               Cow position:chr12:10942473-10942154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):17, 141

               
               
               Conread position:60-402
               
               
               Cow position:chr12:15050448-15050784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:60-445
               
               
               Cow position:chr12:33851537-33851150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:60-534
               
               
               Cow position:chr12:25804967-25805404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 86

               
               
               Conread position:61-253
               
               
               Cow position:chr12:25528385-25528576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:61-528
               
               
               Cow position:chr12:34473432-34473902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:331
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:62-235
               
               
               Cow position:chr12:46106967-46106792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 146

               
               
               Conread position:62-287
               
               
               Cow position:chr12:2734738-2734958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:62-301
               
               
               Cow position:chr12:45001895-45002131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 49

               
               
               Conread position:62-328
               
               
               Cow position:chr12:5554162-5554426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:62-382
               
               
               Cow position:chr12:9766704-9767020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:62-382
               
               
               Cow position:chr12:16670441-16670119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 26

               
               
               Conread position:62-525
               
               
               Cow position:chr12:25561542-25561085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:62-530
               
               
               Cow position:chr12:9143561-9143102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:62-534
               
               
               Cow position:chr12:31530475-31529998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:325
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):15, 93

               
               
               Conread position:62-535
               
               
               Cow position:chr12:42602059-42602531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:64-418
               
               
               Cow position:chr12:42684764-42685129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:64-535
               
               
               Cow position:chr12:35770849-35771328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 48

               
               
               Conread position:65-273
               
               
               Cow position:chr12:6480815-6480604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:65-318
               
               
               Cow position:chr12:9130074-9129829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:65-390
               
               
               Cow position:chr12:7539613-7539945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):44, 103

               
               
               Conread position:65-391
               
               
               Cow position:chr12:7902632-7902955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:65-398
               
               
               Cow position:chr12:37169775-37170105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:65-402
               
               
               Cow position:chr12:42784482-42784141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:65-472
               
               
               Cow position:chr12:4162200-4162602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:66-424
               
               
               Cow position:chr12:8759504-8759132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):45, 130

               
               
               Conread position:66-439
               
               
               Cow position:chr12:17879133-17879505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:66-500
               
               
               Cow position:chr12:44602679-44602244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:282
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):13, 109

               
               
               Conread position:66-526
               
               
               Cow position:chr12:22284952-22285386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:67-288
               
               
               Cow position:chr12:42630866-42631089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:67-360
               
               
               Cow position:chr12:19261364-19261074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:67-371
               
               
               Cow position:chr12:38215854-38216174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:67-380
               
               
               Cow position:chr12:7110379-7110056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 239

               
               
               Conread position:67-392
               
               
               Cow position:chr12:4194004-4193678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:67-530
               
               
               Cow position:chr12:36119137-36118681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:68-306
               
               
               Cow position:chr12:29966273-29966038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:69-245
               
               
               Cow position:chr12:1952637-1952810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:69-535
               
               
               Cow position:chr12:15429429-15429895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 13

               
               
               Conread position:69-535
               
               
               Cow position:chr12:30806020-30805560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 13

               
               
               Conread position:70-267
               
               
               Cow position:chr12:31841738-31841539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:70-456
               
               
               Cow position:chr12:36544477-36544869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:70-528
               
               
               Cow position:chr12:19502247-19502708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:71-282
               
               
               Cow position:chr12:48579002-48578798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:71-284
               
               
               Cow position:chr12:24437464-24437682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:71-535
               
               
               Cow position:chr12:41159747-41159302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 11

               
               
               Conread position:73-215
               
               
               Cow position:chr12:38165376-38165518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-282
               
               
               Cow position:chr12:14986912-14986704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-311
               
               
               Cow position:chr12:40157863-40158096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:73-365
               
               
               Cow position:chr12:37008545-37008833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:73-371
               
               
               Cow position:chr12:38851858-38852165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:73-397
               
               
               Cow position:chr12:41658556-41658884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:73-445
               
               
               Cow position:chr12:30210635-30210273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:73-480
               
               
               Cow position:chr12:24663287-24662876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 138

               
               
               Conread position:73-520
               
               
               Cow position:chr12:30919599-30919152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 330

               
               
               Conread position:73-531
               
               
               Cow position:chr12:42879864-42879416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 347

               
               
               Conread position:73-534
               
               
               Cow position:chr12:18021043-18020558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 183

               
               
               Conread position:73-535
               
               
               Cow position:chr12:18518837-18518376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:73-535
               
               
               Cow position:chr12:20776764-20777224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-535
               
               
               Cow position:chr12:30578292-30578754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:313
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:74-333
               
               
               Cow position:chr12:39591466-39591740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):62, 218

               
               
               Conread position:75-259
               
               
               Cow position:chr12:45152455-45152270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 117

               
               
               Conread position:75-403
               
               
               Cow position:chr12:22485976-22485646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):36, 191

               
               
               Conread position:75-418
               
               
               Cow position:chr12:12637022-12637370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:75-535
               
               
               Cow position:chr12:43789189-43788735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:309
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:76-427
               
               
               Cow position:chr12:11587931-11587576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:76-535
               
               
               Cow position:chr12:17882017-17881577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:80-383
               
               
               Cow position:chr12:26576050-26575738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:81-299
               
               
               Cow position:chr12:45039264-45039045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:81-311
               
               
               Cow position:chr12:29057547-29057316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 83

               
               
               Conread position:81-316
               
               
               Cow position:chr12:33949057-33948828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 64

               
               
               Conread position:81-424
               
               
               Cow position:chr12:15414714-15415062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:81-530
               
               
               Cow position:chr12:32169703-32169246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:81-535
               
               
               Cow position:chr12:10895397-10895843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:83-324
               
               
               Cow position:chr12:45092595-45092361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:86-535
               
               
               Cow position:chr12:27563227-27563672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:88-319
               
               
               Cow position:chr12:18513776-18514010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:88-348
               
               
               Cow position:chr12:3371398-3371654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):17, 57

               
               
               Conread position:88-397
               
               
               Cow position:chr12:36790663-36790972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 85

               
               
               Conread position:88-535
               
               
               Cow position:chr12:17080416-17079963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:88-535
               
               
               Cow position:chr12:41217218-41216764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 104

               
               
               Conread position:89-348
               
               
               Cow position:chr12:29357916-29358167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:89-392
               
               
               Cow position:chr12:25809583-25809267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:89-535
               
               
               Cow position:chr12:15122474-15122047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:89-535
               
               
               Cow position:chr12:31532260-31532696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 52

               
               
               Conread position:89-535
               
               
               Cow position:chr12:37993573-37994020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 214

               
               
               Conread position:91-496
               
               
               Cow position:chr12:45363509-45363102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:97-457
               
               
               Cow position:chr12:15762775-15763131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:104-389
               
               
               Cow position:chr12:17269932-17269646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 39

               
               
               Conread position:104-410
               
               
               Cow position:chr12:20636019-20636333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):113, 85

               
               
               Conread position:104-535
               
               
               Cow position:chr12:12198778-12199200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:291
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:105-334
               
               
               Cow position:chr12:24043026-24043264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:107-329
               
               
               Cow position:chr12:26777067-26777283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):111, 5

               
               
               Conread position:109-514
               
               
               Cow position:chr12:43942598-43942207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 43

               
               
               Conread position:109-533
               
               
               Cow position:chr12:4866940-4866523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 30

               
               
               Conread position:133-474
               
               
               Cow position:chr12:27037343-27037681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 220

               
               
               Conread position:133-496
               
               
               Cow position:chr12:17774897-17774550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):84, 39

               
               
               Conread position:143-347
               
               
               Cow position:chr12:30819340-30819130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:147-424
               
               
               Cow position:chr12:6485121-6485395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 99

               
               
               Conread position:153-307
               
               
               Cow position:chr12:46463983-46464136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 39

               
               
               Conread position:155-299
               
               
               Cow position:chr12:15260844-15260701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:155-535
               
               
               Cow position:chr12:30605083-30605451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 133

               
               
               Conread position:157-382
               
               
               Cow position:chr12:24116281-24116510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):13, 122

               
               
               Conread position:157-461
               
               
               Cow position:chr12:29770498-29770798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 78

               
               
               Conread position:157-520
               
               
               Cow position:chr12:2813306-2812943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:157-535
               
               
               Cow position:chr12:19691153-19691530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 78

               
               
               Conread position:158-533
               
               
               Cow position:chr12:17001338-17000965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 135

               
               
               Conread position:162-344
               
               
               Cow position:chr12:33319592-33319774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 131

               
               
               Conread position:166-305
               
               
               Cow position:chr12:27357459-27357320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:167-319
               
               
               Cow position:chr12:23644732-23644887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:167-535
               
               
               Cow position:chr12:6210087-6210452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 24

               
               
               Conread position:168-529
               
               
               Cow position:chr12:32715114-32714752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 64

               
               
               Conread position:168-535
               
               
               Cow position:chr12:18577910-18577555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 179

               
               
               Conread position:168-535
               
               
               Cow position:chr12:30170738-30170372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:169-346
               
               
               Cow position:chr12:19274330-19274494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:169-511
               
               
               Cow position:chr12:25177529-25177864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 86

               
               
               Conread position:169-524
               
               
               Cow position:chr12:18388222-18388566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:169-531
               
               
               Cow position:chr12:15531123-15530774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 40

               
               
               Conread position:171-305
               
               
               Cow position:chr12:15641040-15641177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:171-380
               
               
               Cow position:chr12:44202920-44203127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):133, 46

               
               
               Conread position:171-390
               
               
               Cow position:chr12:38184661-38184443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:171-466
               
               
               Cow position:chr12:25444981-25444691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:171-509
               
               
               Cow position:chr12:18765906-18766247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 253

               
               
               Conread position:171-530
               
               
               Cow position:chr12:7000538-7000879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):177, 30

               
               
               Conread position:171-534
               
               
               Cow position:chr12:47804223-47803861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 25

               
               
               Conread position:172-514
               
               
               Cow position:chr12:29779848-29780175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:177-479
               
               
               Cow position:chr12:35378262-35377961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 52

               
               
               Conread position:177-518
               
               
               Cow position:chr12:18943597-18943921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 121

               
               
               Conread position:177-535
               
               
               Cow position:chr12:22882117-22881757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):37, 231

               
               
               Conread position:178-381
               
               
               Cow position:chr12:3092520-3092717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 117

               
               
               Conread position:190-345
               
               
               Cow position:chr12:6235337-6235176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:191-432
               
               
               Cow position:chr12:18550928-18550686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:196-535
               
               
               Cow position:chr12:19664490-19664810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:197-402
               
               
               Cow position:chr12:9894824-9894616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 50

               
               
               Conread position:199-535
               
               
               Cow position:chr12:3056171-3055841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:203-418
               
               
               Cow position:chr12:18420504-18420288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:203-482
               
               
               Cow position:chr12:28471682-28471398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):14, 99

               
               
               Conread position:216-397
               
               
               Cow position:chr12:4790554-4790729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 24

               
               
               Conread position:220-525
               
               
               Cow position:chr12:941657-941347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:238-461
               
               
               Cow position:chr12:38454908-38454693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:252-520
               
               
               Cow position:chr12:29411504-29411768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 155

               
               
               Conread position:9-531
               
               
               Cow position:chr13:43479782-43480299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:31-445
               
               
               Cow position:chr13:20088980-20088547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:282
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):14, 166

               
               
               Conread position:37-364
               
               
               Cow position:chr13:50589585-50589251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:37-533
               
               
               Cow position:chr13:14063775-14063288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:39-410
               
               
               Cow position:chr13:21280755-21280366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:41-379
               
               
               Cow position:chr13:45073495-45073167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:41-514
               
               
               Cow position:chr13:40490965-40491453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:333
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:42-394
               
               
               Cow position:chr13:12974568-12974907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 40

               
               
               Conread position:42-533
               
               
               Cow position:chr13:9587827-9587344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 31

               
               
               Conread position:43-436
               
               
               Cow position:chr13:1363442-1363841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:47-530
               
               
               Cow position:chr13:21275614-21276092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:47-533
               
               
               Cow position:chr13:19024095-19023599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 146

               
               
               Conread position:48-434
               
               
               Cow position:chr13:44003457-44003864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:50-334
               
               
               Cow position:chr13:55494758-55494477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 23

               
               
               Conread position:51-318
               
               
               Cow position:chr13:45439295-45439548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:51-445
               
               
               Cow position:chr13:49023104-49022718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:52-272
               
               
               Cow position:chr13:21277692-21277485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:52-535
               
               
               Cow position:chr13:9142039-9142524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:54-268
               
               
               Cow position:chr13:31507676-31507466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:54-340
               
               
               Cow position:chr13:13471655-13471364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:54-436
               
               
               Cow position:chr13:17450859-17451241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:54-461
               
               
               Cow position:chr13:52055828-52055424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:54-535
               
               
               Cow position:chr13:20880058-20879593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:55-249
               
               
               Cow position:chr13:28605627-28605431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:55-275
               
               
               Cow position:chr13:51249613-51249395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:55-289
               
               
               Cow position:chr13:57770220-57769990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:55-305
               
               
               Cow position:chr13:47676177-47675920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:55-306
               
               
               Cow position:chr13:14644820-14645067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:55-314
               
               
               Cow position:chr13:15993150-15993408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-314
               
               
               Cow position:chr13:49393185-49392919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):127, 137

               
               
               Conread position:55-333
               
               
               Cow position:chr13:8350065-8350373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:55-394
               
               
               Cow position:chr13:7265341-7265020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):55, 82

               
               
               Conread position:55-457
               
               
               Cow position:chr13:5758566-5758177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 27

               
               
               Conread position:55-508
               
               
               Cow position:chr13:151735-152165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 54

               
               
               Conread position:55-524
               
               
               Cow position:chr13:12045579-12045104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-528
               
               
               Cow position:chr13:38329381-38329865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:55-533
               
               
               Cow position:chr13:3315922-3315433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 251

               
               
               Conread position:55-533
               
               
               Cow position:chr13:12989627-12990085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 83

               
               
               Conread position:55-534
               
               
               Cow position:chr13:38284207-38283743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 34

               
               
               Conread position:55-535
               
               
               Cow position:chr13:26480438-26479972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:56-312
               
               
               Cow position:chr13:21981203-21980954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):14, 26

               
               
               Conread position:57-305
               
               
               Cow position:chr13:51695737-51695983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):83, 24

               
               
               Conread position:57-340
               
               
               Cow position:chr13:17611785-17611501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 90

               
               
               Conread position:57-359
               
               
               Cow position:chr13:21170296-21170597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:57-392
               
               
               Cow position:chr13:10220725-10221048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:57-401
               
               
               Cow position:chr13:19278862-19279203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 65

               
               
               Conread position:57-525
               
               
               Cow position:chr13:6189834-6189398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 99

               
               
               Conread position:59-267
               
               
               Cow position:chr13:3153516-3153727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 109

               
               
               Conread position:59-353
               
               
               Cow position:chr13:20314856-20314555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 98

               
               
               Conread position:59-504
               
               
               Cow position:chr13:15257596-15257168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:59-533
               
               
               Cow position:chr13:55674441-55673965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:60-249
               
               
               Cow position:chr13:43342337-43342526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 108

               
               
               Conread position:60-308
               
               
               Cow position:chr13:11933836-11933585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 133

               
               
               Conread position:60-315
               
               
               Cow position:chr13:57986159-57985915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:60-359
               
               
               Cow position:chr13:25504305-25504601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):156, 52

               
               
               Conread position:60-364
               
               
               Cow position:chr13:18299163-18299477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 137

               
               
               Conread position:60-371
               
               
               Cow position:chr13:13196011-13196323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):53, 72

               
               
               Conread position:60-481
               
               
               Cow position:chr13:55582965-55583386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 30

               
               
               Conread position:60-523
               
               
               Cow position:chr13:57002495-57002962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:60-535
               
               
               Cow position:chr13:21242304-21241850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:60-535
               
               
               Cow position:chr13:31808291-31808754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 117

               
               
               Conread position:60-535
               
               
               Cow position:chr13:47007942-47007496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 22

               
               
               Conread position:61-267
               
               
               Cow position:chr13:30148784-30148586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):154, 48

               
               
               Conread position:61-437
               
               
               Cow position:chr13:11808350-11808706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:61-480
               
               
               Cow position:chr13:54582642-54583071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:61-533
               
               
               Cow position:chr13:17971278-17970795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 216

               
               
               Conread position:62-249
               
               
               Cow position:chr13:5930538-5930349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:62-312
               
               
               Cow position:chr13:34873358-34873609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:62-318
               
               
               Cow position:chr13:54145709-54145450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 174

               
               
               Conread position:62-326
               
               
               Cow position:chr13:33601457-33601195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 74

               
               
               Conread position:62-346
               
               
               Cow position:chr13:11103433-11103136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:62-348
               
               
               Cow position:chr13:18197833-18197550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:62-408
               
               
               Cow position:chr13:15194947-15194613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:62-438
               
               
               Cow position:chr13:26698724-26698348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:62-440
               
               
               Cow position:chr13:54389246-54388870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 78

               
               
               Conread position:62-494
               
               
               Cow position:chr13:37775437-37775027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 83

               
               
               Conread position:62-530
               
               
               Cow position:chr13:12449207-12448753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 19

               
               
               Conread position:62-530
               
               
               Cow position:chr13:56155398-56154924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-533
               
               
               Cow position:chr13:17021954-17021480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:62-533
               
               
               Cow position:chr13:44322663-44323143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:62-535
               
               
               Cow position:chr13:19883262-19882794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:62-535
               
               
               Cow position:chr13:32017748-32017281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 86

               
               
               Conread position:63-240
               
               
               Cow position:chr13:53619771-53619954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:63-514
               
               
               Cow position:chr13:13320570-13320996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:63-535
               
               
               Cow position:chr13:34281453-34281922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 74

               
               
               Conread position:64-239
               
               
               Cow position:chr13:23399541-23399715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:64-240
               
               
               Cow position:chr13:6951352-6951529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:64-344
               
               
               Cow position:chr13:17089740-17089470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:64-462
               
               
               Cow position:chr13:20473901-20473514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:64-514
               
               
               Cow position:chr13:5263505-5263066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:64-535
               
               
               Cow position:chr13:20821062-20820599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:64-535
               
               
               Cow position:chr13:33256270-33256738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 131

               
               
               Conread position:64-535
               
               
               Cow position:chr13:60509349-60508874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 106

               
               
               Conread position:65-235
               
               
               Cow position:chr13:23478675-23478847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:65-290
               
               
               Cow position:chr13:25941488-25941263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:65-340
               
               
               Cow position:chr13:21171796-21171523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 17

               
               
               Conread position:65-358
               
               
               Cow position:chr13:41157168-41157467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 138

               
               
               Conread position:65-380
               
               
               Cow position:chr13:52477870-52477555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:65-529
               
               
               Cow position:chr13:34263594-34263137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:65-533
               
               
               Cow position:chr13:43595330-43594876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 139

               
               
               Conread position:65-535
               
               
               Cow position:chr13:20271457-20270974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:325
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):16, 186

               
               
               Conread position:65-535
               
               
               Cow position:chr13:20893870-20893400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 130

               
               
               Conread position:65-535
               
               
               Cow position:chr13:45023446-45022966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:65-535
               
               
               Cow position:chr13:51528664-51528204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 63

               
               
               Conread position:65-535
               
               
               Cow position:chr13:52893922-52894384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:66-436
               
               
               Cow position:chr13:5671811-5671445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:66-533
               
               
               Cow position:chr13:19610788-19610339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:66-535
               
               
               Cow position:chr13:21235892-21235443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:67-364
               
               
               Cow position:chr13:6889518-6889823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-397
               
               
               Cow position:chr13:20534677-20534990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 73

               
               
               Conread position:67-417
               
               
               Cow position:chr13:20217624-20217260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:67-446
               
               
               Cow position:chr13:607484-607108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:68-286
               
               
               Cow position:chr13:16907991-16908213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:68-392
               
               
               Cow position:chr13:46329826-46329501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:68-535
               
               
               Cow position:chr13:16014581-16015049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 243

               
               
               Conread position:68-535
               
               
               Cow position:chr13:25926566-25927034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:68-535
               
               
               Cow position:chr13:54701959-54702432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:69-353
               
               
               Cow position:chr13:15239733-15239456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 87

               
               
               Conread position:69-392
               
               
               Cow position:chr13:16038502-16038191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:71-257
               
               
               Cow position:chr13:16525448-16525256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:71-286
               
               
               Cow position:chr13:18340311-18340529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:71-295
               
               
               Cow position:chr13:15061708-15061476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:71-295
               
               
               Cow position:chr13:37614417-37614186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:71-308
               
               
               Cow position:chr13:14411672-14411913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:71-319
               
               
               Cow position:chr13:43525467-43525205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:71-319
               
               
               Cow position:chr13:56535248-56535482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:71-445
               
               
               Cow position:chr13:21136131-21135748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 351

               
               
               Conread position:71-462
               
               
               Cow position:chr13:18999310-18999717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:273
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):6, 130

               
               
               Conread position:71-514
               
               
               Cow position:chr13:17745038-17745459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:71-525
               
               
               Cow position:chr13:11820941-11821374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):109, 94

               
               
               Conread position:71-534
               
               
               Cow position:chr13:25695986-25695527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:306
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):144, 56

               
               
               Conread position:71-535
               
               
               Cow position:chr13:17114600-17114138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 127

               
               
               Conread position:72-256
               
               
               Cow position:chr13:5092613-5092428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:72-256
               
               
               Cow position:chr13:18215140-18215332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:72-434
               
               
               Cow position:chr13:18058465-18058104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 71

               
               
               Conread position:72-533
               
               
               Cow position:chr13:17292346-17291891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:72-535
               
               
               Cow position:chr13:17821476-17821018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:73-277
               
               
               Cow position:chr13:49283995-49283793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:73-277
               
               
               Cow position:chr13:53850603-53850811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:73-305
               
               
               Cow position:chr13:37621595-37621346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 182

               
               
               Conread position:73-520
               
               
               Cow position:chr13:11060757-11061214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:307
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):55, 238

               
               
               Conread position:73-529
               
               
               Cow position:chr13:19393079-19393523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 39

               
               
               Conread position:73-529
               
               
               Cow position:chr13:23667040-23667498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:73-529
               
               
               Cow position:chr13:56686226-56686663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:73-535
               
               
               Cow position:chr13:25817312-25817755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:73-535
               
               
               Cow position:chr13:35526411-35525972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):438, 36

               
               
               Conread position:73-535
               
               
               Cow position:chr13:41806559-41807017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 38

               
               
               Conread position:74-276
               
               
               Cow position:chr13:33854897-33854698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 65

               
               
               Conread position:74-291
               
               
               Cow position:chr13:8450117-8450331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:74-357
               
               
               Cow position:chr13:62007891-62008178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:74-426
               
               
               Cow position:chr13:20288122-20288466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:74-505
               
               
               Cow position:chr13:19022048-19022489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 386

               
               
               Conread position:74-529
               
               
               Cow position:chr13:26262006-26261558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 9

               
               
               Conread position:74-530
               
               
               Cow position:chr13:42200404-42200855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:74-533
               
               
               Cow position:chr13:20881137-20880686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:74-535
               
               
               Cow position:chr13:46515843-46516307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:75-359
               
               
               Cow position:chr13:42672645-42672352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 235

               
               
               Conread position:75-445
               
               
               Cow position:chr13:6848709-6849086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:75-448
               
               
               Cow position:chr13:14576000-14576369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:75-515
               
               
               Cow position:chr13:7059243-7059696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:75-534
               
               
               Cow position:chr13:10925138-10924665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:76-306
               
               
               Cow position:chr13:10210867-10210643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):140, 81

               
               
               Conread position:76-382
               
               
               Cow position:chr13:16203451-16203762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:76-438
               
               
               Cow position:chr13:18696609-18696991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 137

               
               
               Conread position:76-466
               
               
               Cow position:chr13:29831641-29831258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 68

               
               
               Conread position:76-533
               
               
               Cow position:chr13:22085946-22085517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:76-535
               
               
               Cow position:chr13:21288299-21287848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 67

               
               
               Conread position:77-534
               
               
               Cow position:chr13:52057343-52057782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:79-495
               
               
               Cow position:chr13:48597698-48598105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 65

               
               
               Conread position:79-510
               
               
               Cow position:chr13:37803668-37804095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 218

               
               
               Conread position:79-530
               
               
               Cow position:chr13:24585837-24586284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:79-535
               
               
               Cow position:chr13:972108-971656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:79-535
               
               
               Cow position:chr13:44626155-44626622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:81-292
               
               
               Cow position:chr13:42849339-42849131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 30

               
               
               Conread position:81-435
               
               
               Cow position:chr13:8374970-8374626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 63

               
               
               Conread position:81-496
               
               
               Cow position:chr13:37593155-37592736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 29

               
               
               Conread position:81-519
               
               
               Cow position:chr13:36876856-36877298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 65

               
               
               Conread position:81-533
               
               
               Cow position:chr13:311223-311670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 161

               
               
               Conread position:82-347
               
               
               Cow position:chr13:35557319-35557049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 73

               
               
               Conread position:82-363
               
               
               Cow position:chr13:39939774-39939493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):216, 53

               
               
               Conread position:82-535
               
               
               Cow position:chr13:61977166-61976723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 125

               
               
               Conread position:85-418
               
               
               Cow position:chr13:58763814-58763503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:86-443
               
               
               Cow position:chr13:39423623-39423972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):116, 108

               
               
               Conread position:88-268
               
               
               Cow position:chr13:52913674-52913851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 58

               
               
               Conread position:88-457
               
               
               Cow position:chr13:20157527-20157896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):92, 104

               
               
               Conread position:90-525
               
               
               Cow position:chr13:24369385-24369817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:91-313
               
               
               Cow position:chr13:15083462-15083682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):13, 79

               
               
               Conread position:91-378
               
               
               Cow position:chr13:20250702-20250996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:93-402
               
               
               Cow position:chr13:20248324-20248622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:96-533
               
               
               Cow position:chr13:8203059-8202645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:100-533
               
               
               Cow position:chr13:12408482-12408044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:104-485
               
               
               Cow position:chr13:7032106-7032482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:104-535
               
               
               Cow position:chr13:20606304-20605877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:104-535
               
               
               Cow position:chr13:52283725-52284151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):74, 86

               
               
               Conread position:109-343
               
               
               Cow position:chr13:26720967-26720732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:109-533
               
               
               Cow position:chr13:20666564-20666148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:109-534
               
               
               Cow position:chr13:23478850-23479270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 59

               
               
               Conread position:110-330
               
               
               Cow position:chr13:57436572-57436351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):72, 80

               
               
               Conread position:110-535
               
               
               Cow position:chr13:61047033-61047448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):71, 80

               
               
               Conread position:111-316
               
               
               Cow position:chr13:16160244-16160441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):106, 24

               
               
               Conread position:123-382
               
               
               Cow position:chr13:50751224-50750961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 67

               
               
               Conread position:133-396
               
               
               Cow position:chr13:55727744-55728006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):54, 63

               
               
               Conread position:140-535
               
               
               Cow position:chr13:56148370-56148781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 163

               
               
               Conread position:140-535
               
               
               Cow position:chr13:56160597-56160186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 163

               
               
               Conread position:141-383
               
               
               Cow position:chr13:23525962-23526203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:143-441
               
               
               Cow position:chr13:37640444-37640738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:143-527
               
               
               Cow position:chr13:20679191-20679580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 157

               
               
               Conread position:143-533
               
               
               Cow position:chr13:23856063-23856455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 126

               
               
               Conread position:143-535
               
               
               Cow position:chr13:2413881-2414267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 162

               
               
               Conread position:143-535
               
               
               Cow position:chr13:17799931-17800314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 75

               
               
               Conread position:144-529
               
               
               Cow position:chr13:55316342-55315953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 24

               
               
               Conread position:153-400
               
               
               Cow position:chr13:19320392-19320646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:153-535
               
               
               Cow position:chr13:20706343-20705961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 158

               
               
               Conread position:155-535
               
               
               Cow position:chr13:11460496-11460865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 146

               
               
               Conread position:158-436
               
               
               Cow position:chr13:13238445-13238724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:158-457
               
               
               Cow position:chr13:19188168-19188472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:160-533
               
               
               Cow position:chr13:13176518-13176889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 256

               
               
               Conread position:161-417
               
               
               Cow position:chr13:15144495-15144244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):55, 29

               
               
               Conread position:162-535
               
               
               Cow position:chr13:37484408-37484028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 290

               
               
               Conread position:167-336
               
               
               Cow position:chr13:31529754-31529924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:167-475
               
               
               Cow position:chr13:20231314-20231019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:168-351
               
               
               Cow position:chr13:18181898-18181713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:168-529
               
               
               Cow position:chr13:46736092-46736437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):49, 131

               
               
               Conread position:169-334
               
               
               Cow position:chr13:29662906-29663073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 115

               
               
               Conread position:169-380
               
               
               Cow position:chr13:3211427-3211642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:169-389
               
               
               Cow position:chr13:50568527-50568317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):181, 123

               
               
               Conread position:169-392
               
               
               Cow position:chr13:47022243-47022462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:169-432
               
               
               Cow position:chr13:11381845-11381579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 52

               
               
               Conread position:169-513
               
               
               Cow position:chr13:9593384-9593726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:169-514
               
               
               Cow position:chr13:47356530-47356848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:169-516
               
               
               Cow position:chr13:12202240-12202587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 251

               
               
               Conread position:169-520
               
               
               Cow position:chr13:17439890-17439539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 73

               
               
               Conread position:169-530
               
               
               Cow position:chr13:48037501-48037857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 29

               
               
               Conread position:169-535
               
               
               Cow position:chr13:10929110-10928748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:169-535
               
               
               Cow position:chr13:21176441-21176082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:169-535
               
               
               Cow position:chr13:52586159-52585779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):48, 259

               
               
               Conread position:170-417
               
               
               Cow position:chr13:62518451-62518204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 162

               
               
               Conread position:170-428
               
               
               Cow position:chr13:51116145-51115889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):47, 165

               
               
               Conread position:170-534
               
               
               Cow position:chr13:40943123-40943484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:170-535
               
               
               Cow position:chr13:20562872-20563240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:171-453
               
               
               Cow position:chr13:15902904-15903181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:171-514
               
               
               Cow position:chr13:36771540-36771205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 23

               
               
               Conread position:172-524
               
               
               Cow position:chr13:6061127-6060777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 163

               
               
               Conread position:172-531
               
               
               Cow position:chr13:3016292-3015930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:172-535
               
               
               Cow position:chr13:31813757-31814109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 121

               
               
               Conread position:174-315
               
               
               Cow position:chr13:47634390-47634533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:176-494
               
               
               Cow position:chr13:15529152-15528828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 284

               
               
               Conread position:177-402
               
               
               Cow position:chr13:8355091-8355312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 57

               
               
               Conread position:177-534
               
               
               Cow position:chr13:6153898-6153538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:177-534
               
               
               Cow position:chr13:15885136-15884773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 127

               
               
               Conread position:178-377
               
               
               Cow position:chr13:48862208-48862008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):39, 60

               
               
               Conread position:179-410
               
               
               Cow position:chr13:34555940-34555711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:179-447
               
               
               Cow position:chr13:62600896-62601163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):38, 5

               
               
               Conread position:189-530
               
               
               Cow position:chr13:26383337-26382994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):27, 130

               
               
               Conread position:189-535
               
               
               Cow position:chr13:18243760-18244098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 106

               
               
               Conread position:190-495
               
               
               Cow position:chr13:9643988-9643681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:190-530
               
               
               Cow position:chr13:8524719-8524384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 178

               
               
               Conread position:193-535
               
               
               Cow position:chr13:15233828-15234152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:196-524
               
               
               Cow position:chr13:11955212-11954883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 203

               
               
               Conread position:196-535
               
               
               Cow position:chr13:10932456-10932794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):98, 167

               
               
               Conread position:201-395
               
               
               Cow position:chr13:3989108-3989308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):92, 195

               
               
               Conread position:210-480
               
               
               Cow position:chr13:14771371-14771647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):7, 250

               
               
               Conread position:212-533
               
               
               Cow position:chr13:23167179-23166857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 246

               
               
               Conread position:213-522
               
               
               Cow position:chr13:20650063-20649754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):93, 232

               
               
               Conread position:214-432
               
               
               Cow position:chr13:52929635-52929852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):177, 83

               
               
               Conread position:214-445
               
               
               Cow position:chr13:49507926-49507693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):103, 89

               
               
               Conread position:214-530
               
               
               Cow position:chr13:46324865-46324551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 106

               
               
               Conread position:215-514
               
               
               Cow position:chr13:37795383-37795654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:217-535
               
               
               Cow position:chr13:12619188-12618848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:218-397
               
               
               Cow position:chr13:32826529-32826348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:223-429
               
               
               Cow position:chr13:6455308-6455508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:226-533
               
               
               Cow position:chr13:16024525-16024828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 77

               
               
               Conread position:231-535
               
               
               Cow position:chr13:30693655-30693943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 66

               
               
               Conread position:233-535
               
               
               Cow position:chr13:37521433-37521138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 64

               
               
               Conread position:238-535
               
               
               Cow position:chr13:20440633-20440361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:252-535
               
               
               Cow position:chr13:12682584-12682299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 214

               
               
               Conread position:19-343
               
               
               Cow position:chr14:25225517-25225840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:26-535
               
               
               Cow position:chr14:20640837-20640321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:39-326
               
               
               Cow position:chr14:10937475-10937772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:42-535
               
               
               Cow position:chr14:21357366-21357852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:45-529
               
               
               Cow position:chr14:3194687-3195145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 17

               
               
               Conread position:46-367
               
               
               Cow position:chr14:16524285-16524607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:46-436
               
               
               Cow position:chr14:26628720-26628318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):30, 155

               
               
               Conread position:47-348
               
               
               Cow position:chr14:29964832-29965131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:47-431
               
               
               Cow position:chr14:36254878-36254508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:50-230
               
               
               Cow position:chr14:2852966-2853147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):59, 118

               
               
               Conread position:50-312
               
               
               Cow position:chr14:29734547-29734285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:50-332
               
               
               Cow position:chr14:23962667-23962950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 148

               
               
               Conread position:50-479
               
               
               Cow position:chr14:26859920-26859478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:51-242
               
               
               Cow position:chr14:8949468-8949659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 98

               
               
               Conread position:51-332
               
               
               Cow position:chr14:33546539-33546256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:51-457
               
               
               Cow position:chr14:14949400-14948984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:51-535
               
               
               Cow position:chr14:18941471-18941004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:51-535
               
               
               Cow position:chr14:26442526-26442038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 9

               
               
               Conread position:52-400
               
               
               Cow position:chr14:48772733-48773072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 78

               
               
               Conread position:52-484
               
               
               Cow position:chr14:27355212-27355651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 117

               
               
               Conread position:53-272
               
               
               Cow position:chr14:41156899-41156685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):163, 17

               
               
               Conread position:53-382
               
               
               Cow position:chr14:45045417-45045750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):59, 9

               
               
               Conread position:54-373
               
               
               Cow position:chr14:1708838-1708516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:54-382
               
               
               Cow position:chr14:7036535-7036205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 36

               
               
               Conread position:54-407
               
               
               Cow position:chr14:12512069-12511726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:54-480
               
               
               Cow position:chr14:13042580-13043005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:55-259
               
               
               Cow position:chr14:11472410-11472202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:55-295
               
               
               Cow position:chr14:9510366-9510603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):123, 88

               
               
               Conread position:55-317
               
               
               Cow position:chr14:27884839-27885102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:55-333
               
               
               Cow position:chr14:19487134-19487387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):161, 50

               
               
               Conread position:55-408
               
               
               Cow position:chr14:33457222-33456864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:55-416
               
               
               Cow position:chr14:12855971-12855620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 138

               
               
               Conread position:55-489
               
               
               Cow position:chr14:45275737-45276172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:55-522
               
               
               Cow position:chr14:47609770-47609301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:323
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):25, 133

               
               
               Conread position:55-528
               
               
               Cow position:chr14:24921921-24922399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:55-535
               
               
               Cow position:chr14:8848097-8848548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 101

               
               
               Conread position:55-535
               
               
               Cow position:chr14:20932446-20932918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-535
               
               
               Cow position:chr14:22988858-22989334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-535
               
               
               Cow position:chr14:23682087-23682563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:56-266
               
               
               Cow position:chr14:20736436-20736644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 88

               
               
               Conread position:56-378
               
               
               Cow position:chr14:27823257-27823578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):85, 17

               
               
               Conread position:56-504
               
               
               Cow position:chr14:49410958-49411389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):161, 25

               
               
               Conread position:56-533
               
               
               Cow position:chr14:20667183-20666727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 90

               
               
               Conread position:56-533
               
               
               Cow position:chr14:23090558-23090080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:319
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):55, 5

               
               
               Conread position:57-267
               
               
               Cow position:chr14:47224550-47224332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):21, 194

               
               
               Conread position:57-289
               
               
               Cow position:chr14:20984154-20984394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):25, 141

               
               
               Conread position:57-533
               
               
               Cow position:chr14:37103032-37103501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:57-534
               
               
               Cow position:chr14:19851203-19850733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:57-534
               
               
               Cow position:chr14:20016888-20016408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 120

               
               
               Conread position:57-535
               
               
               Cow position:chr14:45677053-45677523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:58-346
               
               
               Cow position:chr14:41486446-41486148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:58-360
               
               
               Cow position:chr14:19193287-19193601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:58-535
               
               
               Cow position:chr14:12546735-12546288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:322
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:59-383
               
               
               Cow position:chr14:11470329-11469997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:59-430
               
               
               Cow position:chr14:46973267-46973634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):121, 23

               
               
               Conread position:59-507
               
               
               Cow position:chr14:49824789-49824357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:59-535
               
               
               Cow position:chr14:26115883-26116363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:60-292
               
               
               Cow position:chr14:1431991-1431773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):156, 22

               
               
               Conread position:60-311
               
               
               Cow position:chr14:4848175-4848424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):7, 50

               
               
               Conread position:60-312
               
               
               Cow position:chr14:13731273-13731018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:60-445
               
               
               Cow position:chr14:25986337-25986730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 136

               
               
               Conread position:60-504
               
               
               Cow position:chr14:11043666-11043222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:61-296
               
               
               Cow position:chr14:11576895-11577131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):17, 111

               
               
               Conread position:62-239
               
               
               Cow position:chr14:36151151-36151331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:62-289
               
               
               Cow position:chr14:20245343-20245113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:62-290
               
               
               Cow position:chr14:15470158-15469925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):49, 118

               
               
               Conread position:62-298
               
               
               Cow position:chr14:10706707-10706940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:62-312
               
               
               Cow position:chr14:40191427-40191664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:62-313
               
               
               Cow position:chr14:12033417-12033163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 143

               
               
               Conread position:62-332
               
               
               Cow position:chr14:7198324-7198600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-337
               
               
               Cow position:chr14:23104170-23103893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:62-337
               
               
               Cow position:chr14:49487791-49488064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 67

               
               
               Conread position:62-349
               
               
               Cow position:chr14:48899997-48900289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:62-357
               
               
               Cow position:chr14:4282681-4282383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-367
               
               
               Cow position:chr14:12073128-12072816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:62-393
               
               
               Cow position:chr14:23424093-23424418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 76

               
               
               Conread position:62-393
               
               
               Cow position:chr14:23442854-23443179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 76

               
               
               Conread position:62-465
               
               
               Cow position:chr14:20826317-20826705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:62-472
               
               
               Cow position:chr14:20110892-20110484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:62-496
               
               
               Cow position:chr14:13845822-13846246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:62-514
               
               
               Cow position:chr14:32452081-32452534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:62-517
               
               
               Cow position:chr14:48447338-48446878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:62-530
               
               
               Cow position:chr14:11508408-11507948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:62-530
               
               
               Cow position:chr14:18345898-18345436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:62-535
               
               
               Cow position:chr14:19852108-19851620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:62-535
               
               
               Cow position:chr14:40253046-40253523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):46, 140

               
               
               Conread position:62-535
               
               
               Cow position:chr14:42155139-42154661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:63-256
               
               
               Cow position:chr14:20070889-20071094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:63-535
               
               
               Cow position:chr14:24236655-24237118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:63-535
               
               
               Cow position:chr14:28304959-28304486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:64-284
               
               
               Cow position:chr14:4860328-4860553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:64-436
               
               
               Cow position:chr14:12343017-12342615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):17, 135

               
               
               Conread position:64-504
               
               
               Cow position:chr14:39918906-39918495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:64-535
               
               
               Cow position:chr14:41210690-41211157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:65-239
               
               
               Cow position:chr14:11604715-11604888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 76

               
               
               Conread position:65-248
               
               
               Cow position:chr14:32784285-32784100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:65-363
               
               
               Cow position:chr14:47170519-47170221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:65-368
               
               
               Cow position:chr14:33229569-33229260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 95

               
               
               Conread position:66-392
               
               
               Cow position:chr14:26655305-26654973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 129

               
               
               Conread position:66-535
               
               
               Cow position:chr14:34096754-34096296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 191

               
               
               Conread position:67-299
               
               
               Cow position:chr14:23078955-23078726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:67-351
               
               
               Cow position:chr14:24527328-24527044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-364
               
               
               Cow position:chr14:12635045-12634755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:67-367
               
               
               Cow position:chr14:27504405-27504102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 93

               
               
               Conread position:67-533
               
               
               Cow position:chr14:49929910-49929437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:312
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:67-534
               
               
               Cow position:chr14:25681754-25682244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:332
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:67-535
               
               
               Cow position:chr14:41749923-41749464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:68-277
               
               
               Cow position:chr14:21557191-21556982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:68-309
               
               
               Cow position:chr14:5959159-5958910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:68-423
               
               
               Cow position:chr14:48838426-48838786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:68-535
               
               
               Cow position:chr14:41809818-41809352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:69-343
               
               
               Cow position:chr14:21224480-21224749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:69-378
               
               
               Cow position:chr14:35533203-35532890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):111, 12

               
               
               Conread position:71-495
               
               
               Cow position:chr14:28115353-28114924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:71-533
               
               
               Cow position:chr14:19188896-19189337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 19

               
               
               Conread position:71-535
               
               
               Cow position:chr14:10078093-10078557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:72-307
               
               
               Cow position:chr14:43868144-43868383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:73-379
               
               
               Cow position:chr14:24945655-24945344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:73-382
               
               
               Cow position:chr14:12954536-12954233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:73-392
               
               
               Cow position:chr14:25903371-25903684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:73-418
               
               
               Cow position:chr14:21933506-21933155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:73-530
               
               
               Cow position:chr14:5222446-5221992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:73-534
               
               
               Cow position:chr14:34200020-34199543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 142

               
               
               Conread position:73-535
               
               
               Cow position:chr14:18309461-18309010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:320
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:74-392
               
               
               Cow position:chr14:22941900-22941562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:75-318
               
               
               Cow position:chr14:28924006-28924250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 227

               
               
               Conread position:75-427
               
               
               Cow position:chr14:15492432-15492791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:75-453
               
               
               Cow position:chr14:8946242-8945863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:75-454
               
               
               Cow position:chr14:15313399-15313776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:254
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:75-486
               
               
               Cow position:chr14:12667570-12667982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:276
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:75-534
               
               
               Cow position:chr14:36437648-36437185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 118

               
               
               Conread position:75-535
               
               
               Cow position:chr14:33791034-33791489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:75-535
               
               
               Cow position:chr14:42330187-42330654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:76-530
               
               
               Cow position:chr14:36166782-36167228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 132

               
               
               Conread position:79-418
               
               
               Cow position:chr14:23080909-23080579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:79-535
               
               
               Cow position:chr14:33714829-33714388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 75

               
               
               Conread position:80-340
               
               
               Cow position:chr14:25227993-25228244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:81-290
               
               
               Cow position:chr14:11729260-11729053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:84-479
               
               
               Cow position:chr14:16760249-16760642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 71

               
               
               Conread position:84-513
               
               
               Cow position:chr14:7695114-7695527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:84-535
               
               
               Cow position:chr14:26433399-26432941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 274

               
               
               Conread position:85-348
               
               
               Cow position:chr14:10693406-10693145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 156

               
               
               Conread position:85-534
               
               
               Cow position:chr14:19594284-19593841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:311
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:87-327
               
               
               Cow position:chr14:34775896-34775655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:88-372
               
               
               Cow position:chr14:42419425-42419135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):52, 110

               
               
               Conread position:88-382
               
               
               Cow position:chr14:19359723-19360044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:88-461
               
               
               Cow position:chr14:30606063-30605692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):99, 44

               
               
               Conread position:89-252
               
               
               Cow position:chr14:11280258-11280094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:89-431
               
               
               Cow position:chr14:42246859-42247187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:89-533
               
               
               Cow position:chr14:16237655-16237209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:90-535
               
               
               Cow position:chr14:27848035-27848500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 362

               
               
               Conread position:91-530
               
               
               Cow position:chr14:26941364-26940928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:99-533
               
               
               Cow position:chr14:1646319-1645891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:104-396
               
               
               Cow position:chr14:33300567-33300869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:112-535
               
               
               Cow position:chr14:41479782-41479359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:116-288
               
               
               Cow position:chr14:2541215-2541045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:133-347
               
               
               Cow position:chr14:5557221-5557006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:133-534
               
               
               Cow position:chr14:37131559-37131957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:133-535
               
               
               Cow position:chr14:43249486-43249884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 174

               
               
               Conread position:138-337
               
               
               Cow position:chr14:803590-803790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 89

               
               
               Conread position:138-535
               
               
               Cow position:chr14:39618474-39618076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 62

               
               
               Conread position:140-382
               
               
               Cow position:chr14:32553398-32553160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:143-312
               
               
               Cow position:chr14:2833496-2833325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:143-451
               
               
               Cow position:chr14:33830211-33830516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):72, 95

               
               
               Conread position:146-535
               
               
               Cow position:chr14:27592043-27591646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 5

               
               
               Conread position:153-319
               
               
               Cow position:chr14:16457437-16457603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:153-533
               
               
               Cow position:chr14:39775130-39774757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:159-343
               
               
               Cow position:chr14:3779258-3779447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):20, 186

               
               
               Conread position:160-511
               
               
               Cow position:chr14:50055325-50055676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):57, 30

               
               
               Conread position:165-530
               
               
               Cow position:chr14:24416809-24417179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 12

               
               
               Conread position:167-328
               
               
               Cow position:chr14:45577159-45576998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 137

               
               
               Conread position:167-512
               
               
               Cow position:chr14:29632948-29632607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 40

               
               
               Conread position:167-534
               
               
               Cow position:chr14:39778685-39779052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 185

               
               
               Conread position:167-535
               
               
               Cow position:chr14:14316820-14317166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:167-535
               
               
               Cow position:chr14:35544571-35544215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 71

               
               
               Conread position:168-412
               
               
               Cow position:chr14:10631186-10630945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):6, 130

               
               
               Conread position:168-444
               
               
               Cow position:chr14:15997831-15997555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 128

               
               
               Conread position:168-491
               
               
               Cow position:chr14:38338199-38337889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:168-517
               
               
               Cow position:chr14:21691341-21690999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 24

               
               
               Conread position:169-337
               
               
               Cow position:chr14:41837937-41837769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 128

               
               
               Conread position:169-339
               
               
               Cow position:chr14:25333994-25334164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):48, 142

               
               
               Conread position:169-349
               
               
               Cow position:chr14:19959799-19959620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:169-382
               
               
               Cow position:chr14:29698426-29698208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:169-398
               
               
               Cow position:chr14:19951501-19951734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):46, 226

               
               
               Conread position:169-443
               
               
               Cow position:chr14:16256694-16256977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:169-494
               
               
               Cow position:chr14:34983802-34984122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):48, 119

               
               
               Conread position:169-533
               
               
               Cow position:chr14:35018818-35018458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:169-535
               
               
               Cow position:chr14:34083229-34082856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:170-381
               
               
               Cow position:chr14:2038872-2038666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:171-506
               
               
               Cow position:chr14:19372276-19372613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 274

               
               
               Conread position:171-514
               
               
               Cow position:chr14:19129443-19129789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 256

               
               
               Conread position:171-528
               
               
               Cow position:chr14:9901121-9901463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):96, 62

               
               
               Conread position:171-535
               
               
               Cow position:chr14:19863497-19863141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:184-535
               
               
               Cow position:chr14:41325495-41325140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 5

               
               
               Conread position:195-412
               
               
               Cow position:chr14:1859655-1859434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:196-514
               
               
               Cow position:chr14:24796471-24796145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 259

               
               
               Conread position:198-340
               
               
               Cow position:chr14:2345031-2345175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:198-534
               
               
               Cow position:chr14:11615257-11614919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):19, 97

               
               
               Conread position:203-430
               
               
               Cow position:chr14:3162696-3162907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):12, 138

               
               
               Conread position:203-526
               
               
               Cow position:chr14:37679034-37678707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:208-535
               
               
               Cow position:chr14:47591939-47591621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):66, 81

               
               
               Conread position:212-535
               
               
               Cow position:chr14:21201846-21201530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):5, 107

               
               
               Conread position:215-457
               
               
               Cow position:chr14:26490760-26490518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):127, 80

               
               
               Conread position:216-352
               
               
               Cow position:chr14:19939108-19939243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:216-535
               
               
               Cow position:chr14:17238335-17238663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):178, 213

               
               
               Conread position:228-535
               
               
               Cow position:chr14:33326400-33326095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):105, 75

               
               
               Conread position:9-533
               
               
               Cow position:chr15:21366370-21365856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:349
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:22-288
               
               
               Cow position:chr15:15154132-15154402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:36-426
               
               
               Cow position:chr15:38037097-38036698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):10, 127

               
               
               Conread position:39-344
               
               
               Cow position:chr15:36952347-36952043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 108

               
               
               Conread position:41-430
               
               
               Cow position:chr15:16017885-16018279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):6, 154

               
               
               Conread position:45-434
               
               
               Cow position:chr15:16261181-16261562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:45-533
               
               
               Cow position:chr15:30986425-30985937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 5

               
               
               Conread position:47-239
               
               
               Cow position:chr15:848503-848696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 98

               
               
               Conread position:47-348
               
               
               Cow position:chr15:40015142-40014839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:48-491
               
               
               Cow position:chr15:26919407-26918972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:48-520
               
               
               Cow position:chr15:24616426-24616898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:327
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):13, 150

               
               
               Conread position:50-277
               
               
               Cow position:chr15:34223727-34223957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:51-441
               
               
               Cow position:chr15:4295626-4296020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):109, 248

               
               
               Conread position:52-305
               
               
               Cow position:chr15:37970668-37970931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 103

               
               
               Conread position:52-535
               
               
               Cow position:chr15:21608855-21608385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:53-477
               
               
               Cow position:chr15:45584587-45585012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 195

               
               
               Conread position:54-231
               
               
               Cow position:chr15:52747396-52747571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:54-232
               
               
               Cow position:chr15:53006071-53005893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:54-535
               
               
               Cow position:chr15:16112263-16112750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:54-535
               
               
               Cow position:chr15:30047687-30047190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 412

               
               
               Conread position:55-235
               
               
               Cow position:chr15:840279-840099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:55-301
               
               
               Cow position:chr15:26442080-26442329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):18, 90

               
               
               Conread position:55-313
               
               
               Cow position:chr15:42380798-42381053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):147, 26

               
               
               Conread position:55-320
               
               
               Cow position:chr15:26851357-26851092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):12, 101

               
               
               Conread position:55-326
               
               
               Cow position:chr15:36388170-36388431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):160, 18

               
               
               Conread position:55-444
               
               
               Cow position:chr15:275514-275902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:55-531
               
               
               Cow position:chr15:13284902-13285376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:55-534
               
               
               Cow position:chr15:608012-608508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:55-535
               
               
               Cow position:chr15:6227305-6226853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 24

               
               
               Conread position:55-535
               
               
               Cow position:chr15:20459441-20458954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:56-273
               
               
               Cow position:chr15:29793333-29793106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:56-275
               
               
               Cow position:chr15:15992771-15992554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):161, 33

               
               
               Conread position:56-296
               
               
               Cow position:chr15:11909077-11908841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:56-361
               
               
               Cow position:chr15:27230626-27230938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 139

               
               
               Conread position:56-367
               
               
               Cow position:chr15:5719934-5719626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:56-529
               
               
               Cow position:chr15:33284747-33285222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 25

               
               
               Conread position:56-530
               
               
               Cow position:chr15:21893648-21894123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 100

               
               
               Conread position:56-533
               
               
               Cow position:chr15:45478864-45479351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:57-302
               
               
               Cow position:chr15:9879510-9879261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:57-447
               
               
               Cow position:chr15:23572819-23572417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:57-516
               
               
               Cow position:chr15:36435075-36435537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:57-533
               
               
               Cow position:chr15:30316688-30316248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:57-535
               
               
               Cow position:chr15:25208889-25208418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 107

               
               
               Conread position:58-311
               
               
               Cow position:chr15:9978975-9979225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):144, 24

               
               
               Conread position:58-371
               
               
               Cow position:chr15:5409025-5408723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:58-522
               
               
               Cow position:chr15:16822820-16823269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:59-257
               
               
               Cow position:chr15:46284044-46283846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):52, 85

               
               
               Conread position:59-535
               
               
               Cow position:chr15:25667354-25666877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 137

               
               
               Conread position:60-239
               
               
               Cow position:chr15:40844748-40844567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 108

               
               
               Conread position:60-316
               
               
               Cow position:chr15:11912688-11912432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 186

               
               
               Conread position:60-364
               
               
               Cow position:chr15:29686434-29686731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:60-364
               
               
               Cow position:chr15:49131932-49132223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):49, 86

               
               
               Conread position:60-433
               
               
               Cow position:chr15:18975892-18975518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:60-456
               
               
               Cow position:chr15:33642960-33643357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 90

               
               
               Conread position:60-514
               
               
               Cow position:chr15:49922008-49922463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 93

               
               
               Conread position:61-240
               
               
               Cow position:chr15:26849658-26849483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:61-493
               
               
               Cow position:chr15:1722965-1722548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:62-331
               
               
               Cow position:chr15:19554050-19553779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:62-382
               
               
               Cow position:chr15:34284529-34284215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:62-412
               
               
               Cow position:chr15:2380242-2380583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:62-419
               
               
               Cow position:chr15:36353541-36353902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:62-436
               
               
               Cow position:chr15:49273838-49274206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:62-492
               
               
               Cow position:chr15:41125683-41125264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:62-528
               
               
               Cow position:chr15:19771013-19771463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:62-535
               
               
               Cow position:chr15:11011718-11011263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 81

               
               
               Conread position:62-535
               
               
               Cow position:chr15:11658705-11658219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:62-535
               
               
               Cow position:chr15:24967677-24968133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr15:35641886-35642366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 136

               
               
               Conread position:63-235
               
               
               Cow position:chr15:30956448-30956274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:63-299
               
               
               Cow position:chr15:2931696-2931453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 110

               
               
               Conread position:63-402
               
               
               Cow position:chr15:30471104-30470753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 115

               
               
               Conread position:63-520
               
               
               Cow position:chr15:20390834-20390367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 94

               
               
               Conread position:63-535
               
               
               Cow position:chr15:40957454-40957925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 136

               
               
               Conread position:64-297
               
               
               Cow position:chr15:44671461-44671224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 17

               
               
               Conread position:64-535
               
               
               Cow position:chr15:8665732-8665237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 136

               
               
               Conread position:65-272
               
               
               Cow position:chr15:36422497-36422698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:65-337
               
               
               Cow position:chr15:52316937-52317208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 99

               
               
               Conread position:65-348
               
               
               Cow position:chr15:36846305-36846014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:65-357
               
               
               Cow position:chr15:13432361-13432665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:65-371
               
               
               Cow position:chr15:10400398-10400085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 108

               
               
               Conread position:65-402
               
               
               Cow position:chr15:8604097-8604438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 70

               
               
               Conread position:65-412
               
               
               Cow position:chr15:4418524-4418174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 115

               
               
               Conread position:65-525
               
               
               Cow position:chr15:37381507-37381967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:66-387
               
               
               Cow position:chr15:40379089-40379413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):24, 131

               
               
               Conread position:66-450
               
               
               Cow position:chr15:23275410-23275799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 142

               
               
               Conread position:66-461
               
               
               Cow position:chr15:7456596-7456973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:66-496
               
               
               Cow position:chr15:47844208-47843801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:66-514
               
               
               Cow position:chr15:12304518-12304965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 80

               
               
               Conread position:67-353
               
               
               Cow position:chr15:14987875-14988157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:67-398
               
               
               Cow position:chr15:19807841-19807505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-504
               
               
               Cow position:chr15:20391397-20390964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:67-529
               
               
               Cow position:chr15:18605289-18605724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:67-535
               
               
               Cow position:chr15:24797924-24797468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:68-343
               
               
               Cow position:chr15:3695517-3695790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:68-388
               
               
               Cow position:chr15:18647261-18647581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:68-519
               
               
               Cow position:chr15:14740804-14740341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:68-524
               
               
               Cow position:chr15:1083489-1083045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 93

               
               
               Conread position:68-535
               
               
               Cow position:chr15:17870411-17869948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 239

               
               
               Conread position:70-441
               
               
               Cow position:chr15:18671567-18671192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 42

               
               
               Conread position:71-250
               
               
               Cow position:chr15:8331314-8331138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:71-344
               
               
               Cow position:chr15:13395432-13395707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:71-535
               
               
               Cow position:chr15:15041542-15041088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:318
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:72-294
               
               
               Cow position:chr15:19002398-19002168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:72-317
               
               
               Cow position:chr15:31637180-31637433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:72-382
               
               
               Cow position:chr15:14888754-14888444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 74

               
               
               Conread position:72-514
               
               
               Cow position:chr15:50322496-50322919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 53

               
               
               Conread position:72-533
               
               
               Cow position:chr15:6969872-6970328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:73-273
               
               
               Cow position:chr15:28098998-28099199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:73-313
               
               
               Cow position:chr15:21903521-21903282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):143, 65

               
               
               Conread position:73-316
               
               
               Cow position:chr15:50332861-50333110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):38, 172

               
               
               Conread position:73-324
               
               
               Cow position:chr15:40835001-40835251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:73-346
               
               
               Cow position:chr15:41056323-41056046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):60, 252

               
               
               Conread position:73-358
               
               
               Cow position:chr15:10442625-10442331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 203

               
               
               Conread position:73-366
               
               
               Cow position:chr15:25349860-25350146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:73-376
               
               
               Cow position:chr15:28047875-28047564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:73-411
               
               
               Cow position:chr15:24982290-24981967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:73-445
               
               
               Cow position:chr15:36887725-36888083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:73-524
               
               
               Cow position:chr15:30001582-30002024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:73-535
               
               
               Cow position:chr15:23530609-23531069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 38

               
               
               Conread position:73-535
               
               
               Cow position:chr15:47042760-47042291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 255

               
               
               Conread position:74-345
               
               
               Cow position:chr15:4694638-4694903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):143, 23

               
               
               Conread position:74-415
               
               
               Cow position:chr15:14576219-14576564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:74-530
               
               
               Cow position:chr15:31201889-31202347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:315
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 184

               
               
               Conread position:75-347
               
               
               Cow position:chr15:25571924-25571648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:75-392
               
               
               Cow position:chr15:24804912-24804585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 113

               
               
               Conread position:75-454
               
               
               Cow position:chr15:4862019-4861645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:75-515
               
               
               Cow position:chr15:48851604-48851172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:75-535
               
               
               Cow position:chr15:14870643-14871093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:75-535
               
               
               Cow position:chr15:20370564-20370121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:75-535
               
               
               Cow position:chr15:23798634-23798173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:315
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:75-535
               
               
               Cow position:chr15:36259709-36259245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 60

               
               
               Conread position:76-412
               
               
               Cow position:chr15:4179050-4178710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:76-524
               
               
               Cow position:chr15:31857478-31857927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:78-530
               
               
               Cow position:chr15:17196036-17196486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:79-457
               
               
               Cow position:chr15:244674-245046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 88

               
               
               Conread position:79-482
               
               
               Cow position:chr15:5420990-5420590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 65

               
               
               Conread position:79-533
               
               
               Cow position:chr15:24994619-24994184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:80-299
               
               
               Cow position:chr15:27063624-27063408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 74

               
               
               Conread position:81-364
               
               
               Cow position:chr15:29541759-29542059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:81-364
               
               
               Cow position:chr15:50552640-50552350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 116

               
               
               Conread position:81-390
               
               
               Cow position:chr15:31929004-31928694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:81-401
               
               
               Cow position:chr15:51307776-51307464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:81-434
               
               
               Cow position:chr15:5726209-5726573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):62, 227

               
               
               Conread position:82-349
               
               
               Cow position:chr15:20950146-20950414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 109

               
               
               Conread position:82-383
               
               
               Cow position:chr15:49784386-49784093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):32, 64

               
               
               Conread position:82-412
               
               
               Cow position:chr15:53716329-53716659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:86-535
               
               
               Cow position:chr15:33306019-33306453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 41

               
               
               Conread position:87-348
               
               
               Cow position:chr15:13783068-13782807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 74

               
               
               Conread position:88-533
               
               
               Cow position:chr15:16543537-16543120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 53

               
               
               Conread position:88-533
               
               
               Cow position:chr15:22532154-22532585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:89-348
               
               
               Cow position:chr15:16664183-16664451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:89-358
               
               
               Cow position:chr15:5657719-5658010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):25, 217

               
               
               Conread position:91-295
               
               
               Cow position:chr15:921656-921854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):126, 20

               
               
               Conread position:91-431
               
               
               Cow position:chr15:8353945-8354289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 55

               
               
               Conread position:92-443
               
               
               Cow position:chr15:38837649-38838004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):20, 98

               
               
               Conread position:92-485
               
               
               Cow position:chr15:23696997-23696622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:94-535
               
               
               Cow position:chr15:2953226-2952784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:94-535
               
               
               Cow position:chr15:28038698-28039098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 49

               
               
               Conread position:103-321
               
               
               Cow position:chr15:13701853-13701633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 87

               
               
               Conread position:104-360
               
               
               Cow position:chr15:43851667-43851410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:104-438
               
               
               Cow position:chr15:7308238-7307898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):98, 68

               
               
               Conread position:104-453
               
               
               Cow position:chr15:21583007-21582651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):71, 87

               
               
               Conread position:104-530
               
               
               Cow position:chr15:23180365-23180763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):113, 48

               
               
               Conread position:104-533
               
               
               Cow position:chr15:6462573-6462158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):113, 64

               
               
               Conread position:104-535
               
               
               Cow position:chr15:362945-363364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):113, 15

               
               
               Conread position:104-535
               
               
               Cow position:chr15:38806585-38806153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):77, 86

               
               
               Conread position:109-429
               
               
               Cow position:chr15:50265563-50265246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 81

               
               
               Conread position:109-514
               
               
               Cow position:chr15:21907868-21908258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 28

               
               
               Conread position:110-353
               
               
               Cow position:chr15:12203472-12203716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 82

               
               
               Conread position:121-348
               
               
               Cow position:chr15:14176566-14176339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:121-418
               
               
               Cow position:chr15:915905-915613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 47

               
               
               Conread position:133-329
               
               
               Cow position:chr15:40594559-40594360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:133-535
               
               
               Cow position:chr15:6530902-6530498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 175

               
               
               Conread position:140-306
               
               
               Cow position:chr15:23719528-23719362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:140-377
               
               
               Cow position:chr15:35441125-35440884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 92

               
               
               Conread position:143-438
               
               
               Cow position:chr15:29330960-29331257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 149

               
               
               Conread position:143-529
               
               
               Cow position:chr15:10335712-10336091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:144-530
               
               
               Cow position:chr15:16476775-16476403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:155-344
               
               
               Cow position:chr15:52809618-52809426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 148

               
               
               Conread position:157-340
               
               
               Cow position:chr15:44237384-44237571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:158-529
               
               
               Cow position:chr15:15880897-15881273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 32

               
               
               Conread position:167-339
               
               
               Cow position:chr15:39090275-39090444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):7, 136

               
               
               Conread position:167-340
               
               
               Cow position:chr15:78554-78726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:167-348
               
               
               Cow position:chr15:37284433-37284616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):48, 166

               
               
               Conread position:167-367
               
               
               Cow position:chr15:21820969-21821170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:167-489
               
               
               Cow position:chr15:49257844-49258176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:168-472
               
               
               Cow position:chr15:25906888-25907195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 221

               
               
               Conread position:168-520
               
               
               Cow position:chr15:19280110-19279763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:168-535
               
               
               Cow position:chr15:5729922-5730283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:169-328
               
               
               Cow position:chr15:30794962-30795124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:169-365
               
               
               Cow position:chr15:40415657-40415460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:169-401
               
               
               Cow position:chr15:8254061-8253843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:169-412
               
               
               Cow position:chr15:9648725-9648478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:169-505
               
               
               Cow position:chr15:42789166-42788839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 129

               
               
               Conread position:169-524
               
               
               Cow position:chr15:33624939-33625287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 121

               
               
               Conread position:169-535
               
               
               Cow position:chr15:16307404-16307762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 134

               
               
               Conread position:169-535
               
               
               Cow position:chr15:29340043-29340408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:169-535
               
               
               Cow position:chr15:34207205-34206851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):48, 86

               
               
               Conread position:169-535
               
               
               Cow position:chr15:46868732-46868366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 40

               
               
               Conread position:170-409
               
               
               Cow position:chr15:41087919-41087677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:170-513
               
               
               Cow position:chr15:20351815-20352157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 129

               
               
               Conread position:170-535
               
               
               Cow position:chr15:50302167-50302532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 48

               
               
               Conread position:171-392
               
               
               Cow position:chr15:31560404-31560196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 61

               
               
               Conread position:171-417
               
               
               Cow position:chr15:12870880-12870632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):44, 138

               
               
               Conread position:171-529
               
               
               Cow position:chr15:13554337-13554681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):46, 128

               
               
               Conread position:172-345
               
               
               Cow position:chr15:9497515-9497342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):45, 130

               
               
               Conread position:172-357
               
               
               Cow position:chr15:16908418-16908603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 127

               
               
               Conread position:172-441
               
               
               Cow position:chr15:6905062-6905317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:172-445
               
               
               Cow position:chr15:39316857-39316575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 182

               
               
               Conread position:172-523
               
               
               Cow position:chr15:27863341-27862991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:177-434
               
               
               Cow position:chr15:26117514-26117754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:177-535
               
               
               Cow position:chr15:26404273-26404615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:184-431
               
               
               Cow position:chr15:3726121-3726364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:185-535
               
               
               Cow position:chr15:41360952-41360616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:190-334
               
               
               Cow position:chr15:34751092-34751232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):27, 48

               
               
               Conread position:195-492
               
               
               Cow position:chr15:24305473-24305176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:195-535
               
               
               Cow position:chr15:13515374-13515715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 273

               
               
               Conread position:196-534
               
               
               Cow position:chr15:45322789-45323128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):15, 230

               
               
               Conread position:196-535
               
               
               Cow position:chr15:27732421-27732744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):113, 78

               
               
               Conread position:197-447
               
               
               Cow position:chr15:47280130-47279878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):5, 105

               
               
               Conread position:197-533
               
               
               Cow position:chr15:18720323-18720658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:201-534
               
               
               Cow position:chr15:31545334-31545004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):144, 86

               
               
               Conread position:214-456
               
               
               Cow position:chr15:20046327-20046568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):136, 89

               
               
               Conread position:215-521
               
               
               Cow position:chr15:5632710-5633004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:223-441
               
               
               Cow position:chr15:16904667-16904883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):125, 68

               
               
               Conread position:223-450
               
               
               Cow position:chr15:38877267-38877042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 120

               
               
               Conread position:223-535
               
               
               Cow position:chr15:16448720-16449050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):97, 246

               
               
               Conread position:259-535
               
               
               Cow position:chr15:23702852-23703119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 41

               
               
               Conread position:20-262
               
               
               Cow position:chr16:21044551-21044310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:39-327
               
               
               Cow position:chr16:56243643-56243936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:41-535
               
               
               Cow position:chr16:7665877-7665375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 415

               
               
               Conread position:42-445
               
               
               Cow position:chr16:10592669-10592264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:42-461
               
               
               Cow position:chr16:16552798-16552375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:42-491
               
               
               Cow position:chr16:8193695-8193233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:318
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):7, 168

               
               
               Conread position:43-256
               
               
               Cow position:chr16:21442376-21442591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:44-496
               
               
               Cow position:chr16:28694948-28694524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:292
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):173, 37

               
               
               Conread position:46-535
               
               
               Cow position:chr16:7136118-7136609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 16

               
               
               Conread position:47-273
               
               
               Cow position:chr16:19402537-19402759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:47-323
               
               
               Cow position:chr16:12010332-12010047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:47-396
               
               
               Cow position:chr16:5907588-5907229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:48-304
               
               
               Cow position:chr16:32142321-32142062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 123

               
               
               Conread position:48-450
               
               
               Cow position:chr16:31078875-31079272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 34

               
               
               Conread position:48-535
               
               
               Cow position:chr16:54298701-54298223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:330
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):27, 255

               
               
               Conread position:49-240
               
               
               Cow position:chr16:5396590-5396781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:49-402
               
               
               Cow position:chr16:23955606-23955954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:50-273
               
               
               Cow position:chr16:17474984-17474768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:50-308
               
               
               Cow position:chr16:11390049-11390317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:50-342
               
               
               Cow position:chr16:45294769-45294477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:50-528
               
               
               Cow position:chr16:601172-600695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:317
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:50-535
               
               
               Cow position:chr16:4971797-4972282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 10

               
               
               Conread position:50-535
               
               
               Cow position:chr16:42241894-42242375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:51-365
               
               
               Cow position:chr16:21002146-21002478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 126

               
               
               Conread position:51-372
               
               
               Cow position:chr16:14323971-14324291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 92

               
               
               Conread position:51-445
               
               
               Cow position:chr16:7418598-7418213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 14

               
               
               Conread position:51-535
               
               
               Cow position:chr16:21451075-21450591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:52-296
               
               
               Cow position:chr16:53451934-53451685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:52-392
               
               
               Cow position:chr16:43125722-43126064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 92

               
               
               Conread position:52-405
               
               
               Cow position:chr16:8738291-8737934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:52-453
               
               
               Cow position:chr16:46433102-46433502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 27

               
               
               Conread position:52-515
               
               
               Cow position:chr16:10148488-10148045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:53-253
               
               
               Cow position:chr16:13796491-13796291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):24, 12

               
               
               Conread position:53-348
               
               
               Cow position:chr16:10020768-10020465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 142

               
               
               Conread position:54-392
               
               
               Cow position:chr16:56796433-56796783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:54-535
               
               
               Cow position:chr16:9497041-9497530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:337
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:55-228
               
               
               Cow position:chr16:56198938-56198760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:55-289
               
               
               Cow position:chr16:18572832-18573067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 107

               
               
               Conread position:55-339
               
               
               Cow position:chr16:11584185-11584460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 85

               
               
               Conread position:55-372
               
               
               Cow position:chr16:23739808-23740126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):118, 18

               
               
               Conread position:55-385
               
               
               Cow position:chr16:13696456-13696789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 141

               
               
               Conread position:55-472
               
               
               Cow position:chr16:591584-592011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:55-525
               
               
               Cow position:chr16:50282216-50282678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:312
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):158, 18

               
               
               Conread position:55-533
               
               
               Cow position:chr16:55683520-55683038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 98

               
               
               Conread position:55-535
               
               
               Cow position:chr16:2223172-2223664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 413

               
               
               Conread position:55-535
               
               
               Cow position:chr16:9973257-9973759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 255

               
               
               Conread position:55-535
               
               
               Cow position:chr16:44743906-44744389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 140

               
               
               Conread position:56-357
               
               
               Cow position:chr16:44429095-44428797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):159, 17

               
               
               Conread position:56-427
               
               
               Cow position:chr16:42398667-42399052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):21, 140

               
               
               Conread position:56-495
               
               
               Cow position:chr16:22773195-22772752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 91

               
               
               Conread position:57-230
               
               
               Cow position:chr16:27117528-27117350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 139

               
               
               Conread position:57-239
               
               
               Cow position:chr16:10011630-10011816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:57-240
               
               
               Cow position:chr16:31011547-31011363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:57-248
               
               
               Cow position:chr16:15251843-15252024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:57-267
               
               
               Cow position:chr16:12507038-12507253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 105

               
               
               Conread position:57-267
               
               
               Cow position:chr16:24674453-24674669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:57-371
               
               
               Cow position:chr16:4971106-4970787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:57-495
               
               
               Cow position:chr16:10032858-10032412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:57-535
               
               
               Cow position:chr16:46655501-46655025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:58-356
               
               
               Cow position:chr16:56670690-56671002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 238

               
               
               Conread position:59-257
               
               
               Cow position:chr16:29311745-29311542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:59-289
               
               
               Cow position:chr16:56615287-56615519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:59-431
               
               
               Cow position:chr16:33198214-33198591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 207

               
               
               Conread position:59-480
               
               
               Cow position:chr16:55784528-55784963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):50, 85

               
               
               Conread position:60-375
               
               
               Cow position:chr16:31149592-31149292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):48, 84

               
               
               Conread position:60-402
               
               
               Cow position:chr16:40446485-40446124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:60-480
               
               
               Cow position:chr16:45678194-45677774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 58

               
               
               Conread position:60-489
               
               
               Cow position:chr16:8065668-8066091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 111

               
               
               Conread position:60-534
               
               
               Cow position:chr16:26649418-26649889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 83

               
               
               Conread position:60-535
               
               
               Cow position:chr16:17746060-17745577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:61-288
               
               
               Cow position:chr16:56595175-56595399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:61-315
               
               
               Cow position:chr16:27728465-27728221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):154, 41

               
               
               Conread position:61-332
               
               
               Cow position:chr16:8953458-8953749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:61-410
               
               
               Cow position:chr16:54709836-54710169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):18, 90

               
               
               Conread position:61-520
               
               
               Cow position:chr16:45813482-45813938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 110

               
               
               Conread position:61-530
               
               
               Cow position:chr16:37669499-37669980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 269

               
               
               Conread position:62-264
               
               
               Cow position:chr16:10249605-10249807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:62-265
               
               
               Cow position:chr16:33290600-33290395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:62-288
               
               
               Cow position:chr16:24142737-24142971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):46, 184

               
               
               Conread position:62-348
               
               
               Cow position:chr16:30305602-30305886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:62-349
               
               
               Cow position:chr16:11134771-11135055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:62-355
               
               
               Cow position:chr16:46548047-46548351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):44, 136

               
               
               Conread position:62-429
               
               
               Cow position:chr16:48613260-48613605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:62-499
               
               
               Cow position:chr16:7582931-7582492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 35

               
               
               Conread position:62-528
               
               
               Cow position:chr16:23058217-23058686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 110

               
               
               Conread position:62-530
               
               
               Cow position:chr16:13306656-13307115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:62-534
               
               
               Cow position:chr16:50872974-50873430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 60

               
               
               Conread position:62-535
               
               
               Cow position:chr16:8958843-8959320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 120

               
               
               Conread position:62-535
               
               
               Cow position:chr16:29096132-29095697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:62-535
               
               
               Cow position:chr16:45139878-45139413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:62-535
               
               
               Cow position:chr16:47820787-47820314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:63-304
               
               
               Cow position:chr16:18047938-18048183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):47, 132

               
               
               Conread position:63-392
               
               
               Cow position:chr16:30662056-30662379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):15, 56

               
               
               Conread position:63-400
               
               
               Cow position:chr16:11083210-11082883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):49, 106

               
               
               Conread position:63-402
               
               
               Cow position:chr16:33595730-33596063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:63-431
               
               
               Cow position:chr16:12320437-12320065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 109

               
               
               Conread position:63-461
               
               
               Cow position:chr16:45554644-45554251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 15

               
               
               Conread position:63-501
               
               
               Cow position:chr16:52636181-52636604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):139, 63

               
               
               Conread position:63-514
               
               
               Cow position:chr16:15824230-15824677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:63-530
               
               
               Cow position:chr16:9985189-9985634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 25

               
               
               Conread position:63-534
               
               
               Cow position:chr16:4856887-4857347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:63-534
               
               
               Cow position:chr16:56082149-56082617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:64-217
               
               
               Cow position:chr16:26809586-26809429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:64-288
               
               
               Cow position:chr16:14376994-14376770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:64-313
               
               
               Cow position:chr16:7723912-7723664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):47, 61

               
               
               Conread position:64-377
               
               
               Cow position:chr16:11660256-11660549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 83

               
               
               Conread position:64-392
               
               
               Cow position:chr16:19047222-19047553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:64-535
               
               
               Cow position:chr16:23483494-23483031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 117

               
               
               Conread position:64-535
               
               
               Cow position:chr16:35195398-35195867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 128

               
               
               Conread position:64-535
               
               
               Cow position:chr16:51598400-51598859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:65-305
               
               
               Cow position:chr16:21369978-21370216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):77, 42

               
               
               Conread position:65-310
               
               
               Cow position:chr16:31575358-31575112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:65-343
               
               
               Cow position:chr16:20824689-20824417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 103

               
               
               Conread position:65-383
               
               
               Cow position:chr16:19052845-19052527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 57

               
               
               Conread position:65-513
               
               
               Cow position:chr16:5896627-5896185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 26

               
               
               Conread position:65-529
               
               
               Cow position:chr16:38905012-38905477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 143

               
               
               Conread position:65-534
               
               
               Cow position:chr16:35758414-35757958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:65-535
               
               
               Cow position:chr16:23472952-23472493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:66-426
               
               
               Cow position:chr16:9905307-9904941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 244

               
               
               Conread position:66-520
               
               
               Cow position:chr16:17143151-17142692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 112

               
               
               Conread position:66-535
               
               
               Cow position:chr16:16597770-16597305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:67-268
               
               
               Cow position:chr16:7912336-7912137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:67-445
               
               
               Cow position:chr16:5975300-5974907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:67-461
               
               
               Cow position:chr16:11957372-11957771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:67-503
               
               
               Cow position:chr16:15504324-15504750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:296
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-529
               
               
               Cow position:chr16:9729406-9728953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-535
               
               
               Cow position:chr16:29608730-29608261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:67-535
               
               
               Cow position:chr16:48398048-48398502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:68-305
               
               
               Cow position:chr16:1582722-1582955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):149, 13

               
               
               Conread position:68-348
               
               
               Cow position:chr16:9553257-9552989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 14

               
               
               Conread position:68-509
               
               
               Cow position:chr16:31117410-31117851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 23

               
               
               Conread position:68-510
               
               
               Cow position:chr16:32301790-32302218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:308
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):11, 109

               
               
               Conread position:68-535
               
               
               Cow position:chr16:19670151-19670588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:313
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:69-360
               
               
               Cow position:chr16:17134855-17135145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:69-383
               
               
               Cow position:chr16:45122250-45121930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 263

               
               
               Conread position:69-462
               
               
               Cow position:chr16:52274927-52275318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 77

               
               
               Conread position:69-516
               
               
               Cow position:chr16:25839818-25839380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:69-520
               
               
               Cow position:chr16:2751182-2750749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 122

               
               
               Conread position:69-535
               
               
               Cow position:chr16:42078641-42079096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:71-300
               
               
               Cow position:chr16:12324660-12324431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:71-370
               
               
               Cow position:chr16:30036441-30036139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):124, 40

               
               
               Conread position:71-438
               
               
               Cow position:chr16:3304242-3303868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 63

               
               
               Conread position:71-530
               
               
               Cow position:chr16:14242574-14242123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:71-535
               
               
               Cow position:chr16:41752375-41752830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:72-308
               
               
               Cow position:chr16:15945047-15945288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:72-529
               
               
               Cow position:chr16:51501135-51500681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 76

               
               
               Conread position:72-535
               
               
               Cow position:chr16:42778150-42777706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:73-267
               
               
               Cow position:chr16:15714316-15714118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:73-319
               
               
               Cow position:chr16:9578289-9578531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:73-345
               
               
               Cow position:chr16:42977678-42977394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:73-362
               
               
               Cow position:chr16:28444283-28444574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:73-381
               
               
               Cow position:chr16:40514289-40514587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-432
               
               
               Cow position:chr16:8239660-8240023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 135

               
               
               Conread position:73-432
               
               
               Cow position:chr16:51247149-51246790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 155

               
               
               Conread position:73-433
               
               
               Cow position:chr16:12274274-12273909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):32, 99

               
               
               Conread position:73-488
               
               
               Cow position:chr16:41530104-41530500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):37, 82

               
               
               Conread position:73-492
               
               
               Cow position:chr16:42444364-42443940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 229

               
               
               Conread position:73-496
               
               
               Cow position:chr16:52170257-52169849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:73-526
               
               
               Cow position:chr16:29557420-29557879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:73-533
               
               
               Cow position:chr16:23681565-23681117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:74-390
               
               
               Cow position:chr16:47852395-47852708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:74-461
               
               
               Cow position:chr16:14685188-14685576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:74-535
               
               
               Cow position:chr16:48957002-48956546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:74-535
               
               
               Cow position:chr16:56232015-56231566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 37

               
               
               Conread position:75-304
               
               
               Cow position:chr16:11359349-11359123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:75-436
               
               
               Cow position:chr16:42733819-42734175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):127, 66

               
               
               Conread position:75-518
               
               
               Cow position:chr16:7151971-7152414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 84

               
               
               Conread position:75-534
               
               
               Cow position:chr16:31977984-31978444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 99

               
               
               Conread position:75-535
               
               
               Cow position:chr16:27701062-27701502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:75-535
               
               
               Cow position:chr16:42092176-42092633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:76-322
               
               
               Cow position:chr16:15407355-15407600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:76-535
               
               
               Cow position:chr16:7076121-7075662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 170

               
               
               Conread position:77-277
               
               
               Cow position:chr16:16025644-16025435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:79-253
               
               
               Cow position:chr16:51143997-51143822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:79-270
               
               
               Cow position:chr16:30897803-30897993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):137, 30

               
               
               Conread position:79-312
               
               
               Cow position:chr16:17460375-17460131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:81-334
               
               
               Cow position:chr16:12077285-12077536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):60, 178

               
               
               Conread position:81-478
               
               
               Cow position:chr16:3047146-3047545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:81-478
               
               
               Cow position:chr16:4275546-4275945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:81-529
               
               
               Cow position:chr16:33704998-33704547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:81-533
               
               
               Cow position:chr16:14106840-14106391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 137

               
               
               Conread position:81-534
               
               
               Cow position:chr16:48095573-48096019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:82-328
               
               
               Cow position:chr16:7626348-7626109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:84-364
               
               
               Cow position:chr16:44239619-44239315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:85-305
               
               
               Cow position:chr16:32893811-32893601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:86-282
               
               
               Cow position:chr16:34204874-34205070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):22, 60

               
               
               Conread position:86-385
               
               
               Cow position:chr16:48917666-48917356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 95

               
               
               Conread position:86-516
               
               
               Cow position:chr16:26676498-26676927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 58

               
               
               Conread position:88-287
               
               
               Cow position:chr16:31484477-31484673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:88-357
               
               
               Cow position:chr16:27534284-27534007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 76

               
               
               Conread position:88-378
               
               
               Cow position:chr16:20872200-20871923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):127, 21

               
               
               Conread position:88-535
               
               
               Cow position:chr16:30290500-30290059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 88

               
               
               Conread position:89-307
               
               
               Cow position:chr16:31241104-31241322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:89-360
               
               
               Cow position:chr16:21381384-21381647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:89-445
               
               
               Cow position:chr16:56590695-56590340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:89-535
               
               
               Cow position:chr16:23729730-23730193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:89-535
               
               
               Cow position:chr16:33646203-33645757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:90-393
               
               
               Cow position:chr16:34753766-34754079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 155

               
               
               Conread position:90-419
               
               
               Cow position:chr16:10505001-10504688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 62

               
               
               Conread position:91-436
               
               
               Cow position:chr16:25387155-25386819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 20

               
               
               Conread position:97-272
               
               
               Cow position:chr16:39385669-39385495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:103-530
               
               
               Cow position:chr16:48006324-48006743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 9

               
               
               Conread position:104-363
               
               
               Cow position:chr16:42864565-42864814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 75

               
               
               Conread position:104-364
               
               
               Cow position:chr16:12036507-12036768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:104-382
               
               
               Cow position:chr16:13578685-13578969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:104-402
               
               
               Cow position:chr16:33267891-33267588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):78, 176

               
               
               Conread position:104-412
               
               
               Cow position:chr16:41578396-41578088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 41

               
               
               Conread position:104-426
               
               
               Cow position:chr16:47964651-47964967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:104-504
               
               
               Cow position:chr16:50289321-50288932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 64

               
               
               Conread position:104-528
               
               
               Cow position:chr16:56522303-56522722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):112, 67

               
               
               Conread position:104-535
               
               
               Cow position:chr16:15960109-15960551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 351

               
               
               Conread position:104-535
               
               
               Cow position:chr16:25170563-25170134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 39

               
               
               Conread position:109-382
               
               
               Cow position:chr16:46807372-46807640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 81

               
               
               Conread position:109-460
               
               
               Cow position:chr16:30910784-30910433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:109-533
               
               
               Cow position:chr16:11615078-11615483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:109-533
               
               
               Cow position:chr16:33226373-33226787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 34

               
               
               Conread position:110-441
               
               
               Cow position:chr16:31269307-31268974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:114-354
               
               
               Cow position:chr16:40700575-40700808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:116-496
               
               
               Cow position:chr16:54679821-54679450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 36

               
               
               Conread position:119-513
               
               
               Cow position:chr16:594067-594465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:119-535
               
               
               Cow position:chr16:48086718-48087127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:281
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:126-314
               
               
               Cow position:chr16:19815104-19815283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:133-533
               
               
               Cow position:chr16:24826219-24825812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 169

               
               
               Conread position:133-535
               
               
               Cow position:chr16:39616868-39616487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:134-535
               
               
               Cow position:chr16:49169238-49169639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 51

               
               
               Conread position:139-525
               
               
               Cow position:chr16:11806808-11806435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:140-511
               
               
               Cow position:chr16:48190874-48191231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:141-445
               
               
               Cow position:chr16:41696956-41697258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 153

               
               
               Conread position:143-311
               
               
               Cow position:chr16:33235032-33235195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:143-357
               
               
               Cow position:chr16:53792685-53792901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):74, 155

               
               
               Conread position:147-377
               
               
               Cow position:chr16:42176773-42176541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):68, 20

               
               
               Conread position:155-434
               
               
               Cow position:chr16:17945643-17945362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 233

               
               
               Conread position:155-534
               
               
               Cow position:chr16:48340572-48340948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 143

               
               
               Conread position:156-391
               
               
               Cow position:chr16:17903524-17903766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:159-356
               
               
               Cow position:chr16:42241165-42240968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):57, 96

               
               
               Conread position:161-348
               
               
               Cow position:chr16:8530766-8530956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:161-448
               
               
               Cow position:chr16:4902703-4902415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:161-514
               
               
               Cow position:chr16:36203504-36203850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:161-534
               
               
               Cow position:chr16:4626275-4626650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 163

               
               
               Conread position:162-315
               
               
               Cow position:chr16:17291907-17292061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):55, 136

               
               
               Conread position:167-529
               
               
               Cow position:chr16:26372841-26373202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 70

               
               
               Conread position:167-533
               
               
               Cow position:chr16:13990085-13989731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 130

               
               
               Conread position:167-533
               
               
               Cow position:chr16:18141216-18141584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:167-535
               
               
               Cow position:chr16:11105662-11105301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:167-535
               
               
               Cow position:chr16:11791120-11790756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 74

               
               
               Conread position:167-535
               
               
               Cow position:chr16:13195229-13195590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 258

               
               
               Conread position:169-356
               
               
               Cow position:chr16:16933227-16933037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:169-365
               
               
               Cow position:chr16:34220294-34220093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-396
               
               
               Cow position:chr16:21761862-21762093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:169-410
               
               
               Cow position:chr16:39401908-39402134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):47, 37

               
               
               Conread position:169-461
               
               
               Cow position:chr16:14125244-14124969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):179, 26

               
               
               Conread position:169-462
               
               
               Cow position:chr16:17289055-17288753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 142

               
               
               Conread position:169-533
               
               
               Cow position:chr16:19408420-19408768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 131

               
               
               Conread position:169-534
               
               
               Cow position:chr16:40562339-40561970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:169-535
               
               
               Cow position:chr16:7505192-7504843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 46

               
               
               Conread position:169-535
               
               
               Cow position:chr16:22919575-22919244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):48, 115

               
               
               Conread position:169-535
               
               
               Cow position:chr16:47518954-47518593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 246

               
               
               Conread position:170-376
               
               
               Cow position:chr16:21040134-21039926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 172

               
               
               Conread position:170-534
               
               
               Cow position:chr16:48494447-48494812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 218

               
               
               Conread position:170-535
               
               
               Cow position:chr16:27659639-27659983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:271
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):47, 124

               
               
               Conread position:171-361
               
               
               Cow position:chr16:30358957-30359147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:171-504
               
               
               Cow position:chr16:43105410-43105738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):44, 53

               
               
               Conread position:171-529
               
               
               Cow position:chr16:19003427-19003771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 137

               
               
               Conread position:171-535
               
               
               Cow position:chr16:11102715-11103083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:171-535
               
               
               Cow position:chr16:18402792-18402439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:172-489
               
               
               Cow position:chr16:12633989-12633683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):45, 136

               
               
               Conread position:176-515
               
               
               Cow position:chr16:53048652-53048315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:177-351
               
               
               Cow position:chr16:50370694-50370523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 131

               
               
               Conread position:177-392
               
               
               Cow position:chr16:22207178-22206958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:177-446
               
               
               Cow position:chr16:7550067-7549796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 188

               
               
               Conread position:177-482
               
               
               Cow position:chr16:17982043-17982347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):124, 56

               
               
               Conread position:177-535
               
               
               Cow position:chr16:52889312-52889667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:184-535
               
               
               Cow position:chr16:31122157-31122507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:184-535
               
               
               Cow position:chr16:52790147-52789805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 162

               
               
               Conread position:190-319
               
               
               Cow position:chr16:9597364-9597493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):27, 107

               
               
               Conread position:196-515
               
               
               Cow position:chr16:32327739-32327416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):21, 203

               
               
               Conread position:201-523
               
               
               Cow position:chr16:46175976-46176284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):16, 91

               
               
               Conread position:203-402
               
               
               Cow position:chr16:45753383-45753578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:203-445
               
               
               Cow position:chr16:33130536-33130292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):5, 188

               
               
               Conread position:207-530
               
               
               Cow position:chr16:16548683-16548363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 215

               
               
               Conread position:207-530
               
               
               Cow position:chr16:17606367-17606050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 147

               
               
               Conread position:207-533
               
               
               Cow position:chr16:13752062-13752378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:207-535
               
               
               Cow position:chr16:39646615-39646303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):11, 144

               
               
               Conread position:208-491
               
               
               Cow position:chr16:22860700-22860971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 87

               
               
               Conread position:210-492
               
               
               Cow position:chr16:38787327-38787047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 36

               
               
               Conread position:210-525
               
               
               Cow position:chr16:37380337-37380024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):7, 194

               
               
               Conread position:210-535
               
               
               Cow position:chr16:53813586-53813916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):6, 66

               
               
               Conread position:214-445
               
               
               Cow position:chr16:1725012-1725255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:220-434
               
               
               Cow position:chr16:50533109-50532903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:224-371
               
               
               Cow position:chr16:35477363-35477507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 72

               
               
               Conread position:238-535
               
               
               Cow position:chr16:24148198-24147898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 5

               
               
               Conread position:32-535
               
               
               Cow position:chr17:11664290-11664804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 346

               
               
               Conread position:35-535
               
               
               Cow position:chr17:21738582-21739100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:41-535
               
               
               Cow position:chr17:3389110-3388645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:349
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:42-499
               
               
               Cow position:chr17:3468021-3467590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 11

               
               
               Conread position:43-226
               
               
               Cow position:chr17:22241283-22241094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 130

               
               
               Conread position:46-456
               
               
               Cow position:chr17:24928755-24928338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:289
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):7, 153

               
               
               Conread position:47-535
               
               
               Cow position:chr17:20071833-20072290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 81

               
               
               Conread position:50-340
               
               
               Cow position:chr17:12959372-12959082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 100

               
               
               Conread position:50-533
               
               
               Cow position:chr17:18202030-18201560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:332
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):24, 148

               
               
               Conread position:51-287
               
               
               Cow position:chr17:30501547-30501786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:51-348
               
               
               Cow position:chr17:34772776-34772469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:51-431
               
               
               Cow position:chr17:25616511-25616145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 87

               
               
               Conread position:51-520
               
               
               Cow position:chr17:43717070-43717511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:52-411
               
               
               Cow position:chr17:21744201-21743842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):57, 145

               
               
               Conread position:52-436
               
               
               Cow position:chr17:20884789-20884402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 21

               
               
               Conread position:52-530
               
               
               Cow position:chr17:40741921-40741436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 119

               
               
               Conread position:53-217
               
               
               Cow position:chr17:33321706-33321870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:54-361
               
               
               Cow position:chr17:37815927-37816236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):56, 139

               
               
               Conread position:54-364
               
               
               Cow position:chr17:25126604-25126303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:54-440
               
               
               Cow position:chr17:32138152-32138539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 36

               
               
               Conread position:54-534
               
               
               Cow position:chr17:12289145-12289630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 114

               
               
               Conread position:54-535
               
               
               Cow position:chr17:6936417-6936880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:323
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:54-535
               
               
               Cow position:chr17:33288398-33288870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:55-233
               
               
               Cow position:chr17:27606775-27606600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):53, 90

               
               
               Conread position:55-244
               
               
               Cow position:chr17:17782314-17782127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):160, 97

               
               
               Conread position:55-257
               
               
               Cow position:chr17:20881557-20881750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):160, 10

               
               
               Conread position:55-345
               
               
               Cow position:chr17:21471925-21472209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:55-360
               
               
               Cow position:chr17:33154896-33155200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):59, 97

               
               
               Conread position:55-363
               
               
               Cow position:chr17:21039819-21039516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:55-383
               
               
               Cow position:chr17:27730806-27730472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-385
               
               
               Cow position:chr17:36814624-36814290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):56, 7

               
               
               Conread position:55-394
               
               
               Cow position:chr17:9824929-9824590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:55-412
               
               
               Cow position:chr17:11912244-11912594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:55-453
               
               
               Cow position:chr17:28468387-28467998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 114

               
               
               Conread position:55-474
               
               
               Cow position:chr17:9965760-9966187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 141

               
               
               Conread position:55-502
               
               
               Cow position:chr17:3577790-3577356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 10

               
               
               Conread position:55-533
               
               
               Cow position:chr17:6156294-6155827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:55-535
               
               
               Cow position:chr17:12325507-12325962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:55-535
               
               
               Cow position:chr17:15664938-15664453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:55-535
               
               
               Cow position:chr17:18490792-18490317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:56-267
               
               
               Cow position:chr17:6787201-6786985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):53, 132

               
               
               Conread position:56-267
               
               
               Cow position:chr17:39964135-39963926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):55, 6

               
               
               Conread position:56-305
               
               
               Cow position:chr17:17035203-17034962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:56-381
               
               
               Cow position:chr17:24751172-24750851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:56-395
               
               
               Cow position:chr17:26757182-26757542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:57-277
               
               
               Cow position:chr17:21718737-21718958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):55, 113

               
               
               Conread position:57-287
               
               
               Cow position:chr17:20929504-20929270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:57-413
               
               
               Cow position:chr17:17193751-17193396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 182

               
               
               Conread position:57-513
               
               
               Cow position:chr17:12109067-12108611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 5

               
               
               Conread position:57-521
               
               
               Cow position:chr17:25612348-25611892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:57-533
               
               
               Cow position:chr17:30529283-30529750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 96

               
               
               Conread position:58-351
               
               
               Cow position:chr17:24613485-24613187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):19, 144

               
               
               Conread position:58-499
               
               
               Cow position:chr17:27058290-27058733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:301
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):47, 256

               
               
               Conread position:58-514
               
               
               Cow position:chr17:24824506-24824058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 245

               
               
               Conread position:59-310
               
               
               Cow position:chr17:43315034-43315280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:59-322
               
               
               Cow position:chr17:21466000-21466269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):52, 243

               
               
               Conread position:59-344
               
               
               Cow position:chr17:29995177-29995465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:59-534
               
               
               Cow position:chr17:40332036-40331554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:60-275
               
               
               Cow position:chr17:24895334-24895114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:60-529
               
               
               Cow position:chr17:13940060-13940532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 137

               
               
               Conread position:60-535
               
               
               Cow position:chr17:32989729-32989277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:60-535
               
               
               Cow position:chr17:32993370-32993829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 84

               
               
               Conread position:61-450
               
               
               Cow position:chr17:30728763-30728386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:61-534
               
               
               Cow position:chr17:15102631-15103103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 258

               
               
               Conread position:61-535
               
               
               Cow position:chr17:26818214-26818668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 87

               
               
               Conread position:62-239
               
               
               Cow position:chr17:9260356-9260535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:62-263
               
               
               Cow position:chr17:22081268-22081463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:62-267
               
               
               Cow position:chr17:5344876-5344666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:62-318
               
               
               Cow position:chr17:24841954-24841695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 134

               
               
               Conread position:62-329
               
               
               Cow position:chr17:19783309-19783046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:62-346
               
               
               Cow position:chr17:17044079-17044362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:62-402
               
               
               Cow position:chr17:25342485-25342827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:62-423
               
               
               Cow position:chr17:21325596-21325224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:62-515
               
               
               Cow position:chr17:1256245-1256699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:62-535
               
               
               Cow position:chr17:20801071-20800600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:62-535
               
               
               Cow position:chr17:21972874-21973347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr17:24077639-24077188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 11

               
               
               Conread position:63-318
               
               
               Cow position:chr17:15355189-15354931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:63-358
               
               
               Cow position:chr17:25800632-25800925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:63-389
               
               
               Cow position:chr17:12510731-12511049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):51, 82

               
               
               Conread position:63-533
               
               
               Cow position:chr17:5768150-5767700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:64-335
               
               
               Cow position:chr17:9932058-9932320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:64-445
               
               
               Cow position:chr17:40673624-40673256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:65-245
               
               
               Cow position:chr17:8663760-8663575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:65-268
               
               
               Cow position:chr17:26225280-26225075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:65-302
               
               
               Cow position:chr17:42150640-42150405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:65-326
               
               
               Cow position:chr17:7959431-7959170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:65-343
               
               
               Cow position:chr17:8815439-8815164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):46, 77

               
               
               Conread position:65-348
               
               
               Cow position:chr17:32332839-32333123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:65-380
               
               
               Cow position:chr17:1025586-1025885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:65-450
               
               
               Cow position:chr17:25118137-25117758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:65-535
               
               
               Cow position:chr17:16371514-16371036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 133

               
               
               Conread position:65-535
               
               
               Cow position:chr17:29084420-29083991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 77

               
               
               Conread position:65-535
               
               
               Cow position:chr17:38615218-38614740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 131

               
               
               Conread position:66-327
               
               
               Cow position:chr17:35193566-35193833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 127

               
               
               Conread position:66-534
               
               
               Cow position:chr17:7810496-7810954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 240

               
               
               Conread position:66-535
               
               
               Cow position:chr17:6424006-6423545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 92

               
               
               Conread position:66-535
               
               
               Cow position:chr17:20157859-20157401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 96

               
               
               Conread position:66-535
               
               
               Cow position:chr17:30713597-30713137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 80

               
               
               Conread position:66-535
               
               
               Cow position:chr17:36275587-36275141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:323
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):45, 228

               
               
               Conread position:67-363
               
               
               Cow position:chr17:18934505-18934209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):39, 21

               
               
               Conread position:67-445
               
               
               Cow position:chr17:11962284-11962679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:67-487
               
               
               Cow position:chr17:12306146-12306563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:67-535
               
               
               Cow position:chr17:24883321-24883780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:68-271
               
               
               Cow position:chr17:15728717-15728518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:68-394
               
               
               Cow position:chr17:25709966-25709626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 111

               
               
               Conread position:68-461
               
               
               Cow position:chr17:4105743-4106132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 41

               
               
               Conread position:68-461
               
               
               Cow position:chr17:4121478-4121868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 42

               
               
               Conread position:68-535
               
               
               Cow position:chr17:21003582-21004047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:70-313
               
               
               Cow position:chr17:26637609-26637856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 76

               
               
               Conread position:70-533
               
               
               Cow position:chr17:12929281-12929757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:71-268
               
               
               Cow position:chr17:10016523-10016327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:71-412
               
               
               Cow position:chr17:25513872-25514220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 221

               
               
               Conread position:71-530
               
               
               Cow position:chr17:4225240-4225702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 152

               
               
               Conread position:71-535
               
               
               Cow position:chr17:24587868-24587402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:72-535
               
               
               Cow position:chr17:24786780-24787237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:73-252
               
               
               Cow position:chr17:20836334-20836155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:73-263
               
               
               Cow position:chr17:7711680-7711490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-267
               
               
               Cow position:chr17:12215009-12215209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:73-272
               
               
               Cow position:chr17:44234489-44234294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:73-288
               
               
               Cow position:chr17:946600-946385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-337
               
               
               Cow position:chr17:25473037-25473300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-339
               
               
               Cow position:chr17:33164576-33164839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:73-359
               
               
               Cow position:chr17:40412823-40412544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:73-366
               
               
               Cow position:chr17:25511486-25511194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:73-367
               
               
               Cow position:chr17:22051347-22051644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-374
               
               
               Cow position:chr17:5372288-5372588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-383
               
               
               Cow position:chr17:40639191-40638882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:73-386
               
               
               Cow position:chr17:3153324-3153642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 231

               
               
               Conread position:73-392
               
               
               Cow position:chr17:29026320-29025991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:73-415
               
               
               Cow position:chr17:35573991-35573663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):27, 49

               
               
               Conread position:73-457
               
               
               Cow position:chr17:31037133-31037522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:73-461
               
               
               Cow position:chr17:1634247-1634631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 75

               
               
               Conread position:73-504
               
               
               Cow position:chr17:908983-908562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:73-510
               
               
               Cow position:chr17:12536229-12536658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:73-528
               
               
               Cow position:chr17:25128110-25128558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:73-530
               
               
               Cow position:chr17:11831874-11832347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:73-535
               
               
               Cow position:chr17:28284792-28285242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 35

               
               
               Conread position:73-535
               
               
               Cow position:chr17:29714970-29715402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:73-535
               
               
               Cow position:chr17:34948881-34948424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:74-329
               
               
               Cow position:chr17:37340788-37341053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:74-382
               
               
               Cow position:chr17:39606665-39606362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 69

               
               
               Conread position:75-337
               
               
               Cow position:chr17:5421923-5421655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:75-359
               
               
               Cow position:chr17:5288406-5288124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 88

               
               
               Conread position:75-442
               
               
               Cow position:chr17:4299700-4300045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:267
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:75-515
               
               
               Cow position:chr17:24490783-24490326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 99

               
               
               Conread position:75-533
               
               
               Cow position:chr17:20022272-20022731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:75-535
               
               
               Cow position:chr17:24004615-24004179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:75-535
               
               
               Cow position:chr17:33933506-33933953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 72

               
               
               Conread position:76-273
               
               
               Cow position:chr17:21677132-21676933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:77-462
               
               
               Cow position:chr17:7143097-7142717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:263
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:79-268
               
               
               Cow position:chr17:5027227-5027412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:79-436
               
               
               Cow position:chr17:45296644-45296313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:79-530
               
               
               Cow position:chr17:25901446-25900988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 365

               
               
               Conread position:81-289
               
               
               Cow position:chr17:36432135-36431923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):30, 112

               
               
               Conread position:81-535
               
               
               Cow position:chr17:21114719-21115164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 65

               
               
               Conread position:82-482
               
               
               Cow position:chr17:1562556-1562936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:278
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:85-334
               
               
               Cow position:chr17:24163266-24163020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:88-378
               
               
               Cow position:chr17:26574993-26575291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:89-262
               
               
               Cow position:chr17:24767060-24767234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:89-339
               
               
               Cow position:chr17:10023283-10023032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:89-456
               
               
               Cow position:chr17:21414602-21414976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 39

               
               
               Conread position:89-456
               
               
               Cow position:chr17:21437085-21437459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):51, 39

               
               
               Conread position:89-504
               
               
               Cow position:chr17:1063396-1063005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 52

               
               
               Conread position:89-533
               
               
               Cow position:chr17:32471560-32472005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 60

               
               
               Conread position:89-535
               
               
               Cow position:chr17:25097672-25097247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:90-533
               
               
               Cow position:chr17:36330740-36331180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 54

               
               
               Conread position:97-423
               
               
               Cow position:chr17:40852188-40851875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:100-535
               
               
               Cow position:chr17:18473380-18472963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:104-265
               
               
               Cow position:chr17:25348577-25348419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):111, 41

               
               
               Conread position:104-529
               
               
               Cow position:chr17:34078898-34079308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):78, 87

               
               
               Conread position:109-434
               
               
               Cow position:chr17:25594489-25594822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):78, 36

               
               
               Conread position:111-502
               
               
               Cow position:chr17:36203280-36203672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):97, 80

               
               
               Conread position:114-534
               
               
               Cow position:chr17:18108886-18109301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 53

               
               
               Conread position:115-393
               
               
               Cow position:chr17:40406647-40406366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:129-535
               
               
               Cow position:chr17:29363178-29363579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 5

               
               
               Conread position:133-495
               
               
               Cow position:chr17:29157600-29157243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 102

               
               
               Conread position:140-533
               
               
               Cow position:chr17:35126882-35126500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 72

               
               
               Conread position:143-299
               
               
               Cow position:chr17:29075913-29076066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 24

               
               
               Conread position:153-535
               
               
               Cow position:chr17:1410075-1410457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:155-363
               
               
               Cow position:chr17:22016927-22017135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):151, 56

               
               
               Conread position:163-402
               
               
               Cow position:chr17:27202891-27203131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 146

               
               
               Conread position:166-439
               
               
               Cow position:chr17:33657918-33658190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:167-402
               
               
               Cow position:chr17:23516793-23517029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 10

               
               
               Conread position:167-512
               
               
               Cow position:chr17:552817-553163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:168-535
               
               
               Cow position:chr17:19891773-19891399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:168-535
               
               
               Cow position:chr17:40421820-40421453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 219

               
               
               Conread position:169-291
               
               
               Cow position:chr17:18109401-18109524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:169-495
               
               
               Cow position:chr17:12591322-12590988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 284

               
               
               Conread position:169-530
               
               
               Cow position:chr17:39736322-39735975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 90

               
               
               Conread position:169-533
               
               
               Cow position:chr17:24554144-24553790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:169-535
               
               
               Cow position:chr17:15340604-15340945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 146

               
               
               Conread position:169-535
               
               
               Cow position:chr17:17406283-17405922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:171-399
               
               
               Cow position:chr17:2275616-2275391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 122

               
               
               Conread position:171-524
               
               
               Cow position:chr17:41891916-41892276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:171-535
               
               
               Cow position:chr17:5422923-5423287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 238

               
               
               Conread position:172-533
               
               
               Cow position:chr17:11172471-11172829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:172-534
               
               
               Cow position:chr17:18592587-18592224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:173-339
               
               
               Cow position:chr17:18848014-18848183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:175-334
               
               
               Cow position:chr17:11478911-11478748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:177-398
               
               
               Cow position:chr17:11368710-11368933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 194

               
               
               Conread position:177-533
               
               
               Cow position:chr17:30718278-30718633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 284

               
               
               Conread position:178-535
               
               
               Cow position:chr17:3503720-3503364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:184-429
               
               
               Cow position:chr17:23798413-23798168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):33, 6

               
               
               Conread position:187-528
               
               
               Cow position:chr17:38647191-38646859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 241

               
               
               Conread position:189-535
               
               
               Cow position:chr17:43141581-43141936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):28, 264

               
               
               Conread position:190-475
               
               
               Cow position:chr17:4968239-4967955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 115

               
               
               Conread position:191-320
               
               
               Cow position:chr17:32192727-32192857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:196-535
               
               
               Cow position:chr17:924000-923664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:201-517
               
               
               Cow position:chr17:34596056-34595742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:203-334
               
               
               Cow position:chr17:21793739-21793870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 61

               
               
               Conread position:203-388
               
               
               Cow position:chr17:21478808-21478995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:206-394
               
               
               Cow position:chr17:39715271-39715079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:206-533
               
               
               Cow position:chr17:25541706-25542026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 154

               
               
               Conread position:207-456
               
               
               Cow position:chr17:36500912-36500664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):9, 97

               
               
               Conread position:209-340
               
               
               Cow position:chr17:35140989-35141121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:210-461
               
               
               Cow position:chr17:21917766-21918020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):6, 62

               
               
               Conread position:212-382
               
               
               Cow position:chr17:12880700-12880534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:212-525
               
               
               Cow position:chr17:21335588-21335904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 99

               
               
               Conread position:212-535
               
               
               Cow position:chr17:18860617-18860935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 200

               
               
               Conread position:214-439
               
               
               Cow position:chr17:7137081-7136858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):87, 117

               
               
               Conread position:230-535
               
               
               Cow position:chr17:15333624-15333926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 210

               
               
               Conread position:238-535
               
               
               Cow position:chr17:5733390-5733664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):60, 75

               
               
               Conread position:245-486
               
               
               Cow position:chr17:10510586-10510828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 222

               
               
               Conread position:247-529
               
               
               Cow position:chr17:33290741-33291019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 84

               
               
               Conread position:2-235
               
               
               Cow position:chr18:19614154-19613914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:33-268
               
               
               Cow position:chr18:49602832-49603069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):78, 138

               
               
               Conread position:33-453
               
               
               Cow position:chr18:7414824-7415241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:42-312
               
               
               Cow position:chr18:32600255-32599982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:47-277
               
               
               Cow position:chr18:41724617-41724853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 124

               
               
               Conread position:50-492
               
               
               Cow position:chr18:42431895-42432333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 98

               
               
               Conread position:52-535
               
               
               Cow position:chr18:29648974-29648497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:53-382
               
               
               Cow position:chr18:4264207-4264531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:53-527
               
               
               Cow position:chr18:11691216-11691691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 176

               
               
               Conread position:54-228
               
               
               Cow position:chr18:4907337-4907161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:54-290
               
               
               Cow position:chr18:2793785-2794019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:54-398
               
               
               Cow position:chr18:19688215-19687863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:55-235
               
               
               Cow position:chr18:50276052-50276236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:55-253
               
               
               Cow position:chr18:32176-31981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:55-367
               
               
               Cow position:chr18:34813840-34813526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:55-371
               
               
               Cow position:chr18:53053040-53053370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:55-392
               
               
               Cow position:chr18:30225336-30225692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:55-393
               
               
               Cow position:chr18:1571050-1571388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:55-401
               
               
               Cow position:chr18:25601138-25601477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:55-426
               
               
               Cow position:chr18:15516986-15517349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:264
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):53, 97

               
               
               Conread position:55-457
               
               
               Cow position:chr18:4495706-4496103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:55-530
               
               
               Cow position:chr18:55505592-55505117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:55-533
               
               
               Cow position:chr18:9029806-9029331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:55-533
               
               
               Cow position:chr18:12775595-12776060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:55-535
               
               
               Cow position:chr18:4927261-4926785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:326
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:55-535
               
               
               Cow position:chr18:51405729-51406192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 86

               
               
               Conread position:56-283
               
               
               Cow position:chr18:11672240-11672002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):55, 179

               
               
               Conread position:56-286
               
               
               Cow position:chr18:31556974-31557204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:56-365
               
               
               Cow position:chr18:23163081-23162769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:56-397
               
               
               Cow position:chr18:20462520-20462849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:56-457
               
               
               Cow position:chr18:39623990-39623582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:56-525
               
               
               Cow position:chr18:4668316-4668773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:328
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):31, 117

               
               
               Conread position:56-533
               
               
               Cow position:chr18:7951304-7950826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 6

               
               
               Conread position:57-354
               
               
               Cow position:chr18:23169766-23169463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:57-392
               
               
               Cow position:chr18:7963603-7963294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):61, 94

               
               
               Conread position:57-440
               
               
               Cow position:chr18:48713727-48713351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:57-486
               
               
               Cow position:chr18:18592648-18592233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 24

               
               
               Conread position:57-529
               
               
               Cow position:chr18:10576286-10575829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:57-533
               
               
               Cow position:chr18:7965418-7964944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 136

               
               
               Conread position:57-535
               
               
               Cow position:chr18:9089876-9089416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 25

               
               
               Conread position:57-535
               
               
               Cow position:chr18:44262808-44262334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 8

               
               
               Conread position:57-535
               
               
               Cow position:chr18:51827463-51827002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:328
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):54, 30

               
               
               Conread position:58-378
               
               
               Cow position:chr18:25598048-25598376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:58-397
               
               
               Cow position:chr18:43951013-43950668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):53, 115

               
               
               Conread position:58-533
               
               
               Cow position:chr18:43283568-43284039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:59-339
               
               
               Cow position:chr18:32189336-32189607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):154, 6

               
               
               Conread position:60-235
               
               
               Cow position:chr18:4485778-4485606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:60-283
               
               
               Cow position:chr18:51178530-51178769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:60-347
               
               
               Cow position:chr18:34219723-34220025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:60-378
               
               
               Cow position:chr18:42988124-42988449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:60-388
               
               
               Cow position:chr18:54130159-54130480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:60-481
               
               
               Cow position:chr18:18961651-18962074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:60-533
               
               
               Cow position:chr18:20641317-20641772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:60-535
               
               
               Cow position:chr18:16227740-16227272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:60-535
               
               
               Cow position:chr18:22789910-22790363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:60-535
               
               
               Cow position:chr18:39875060-39875548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 163

               
               
               Conread position:60-535
               
               
               Cow position:chr18:42479398-42479869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:61-387
               
               
               Cow position:chr18:49038636-49038316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 48

               
               
               Conread position:62-288
               
               
               Cow position:chr18:45558325-45558101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:62-289
               
               
               Cow position:chr18:15809632-15809847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:62-301
               
               
               Cow position:chr18:46879979-46880228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:62-311
               
               
               Cow position:chr18:38601703-38601954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 105

               
               
               Conread position:62-312
               
               
               Cow position:chr18:18844192-18843944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:62-318
               
               
               Cow position:chr18:52251673-52251935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):48, 135

               
               
               Conread position:62-319
               
               
               Cow position:chr18:47417181-47416926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 123

               
               
               Conread position:62-340
               
               
               Cow position:chr18:22568887-22569164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:62-350
               
               
               Cow position:chr18:43796778-43797060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 80

               
               
               Conread position:62-369
               
               
               Cow position:chr18:23630434-23630727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:62-392
               
               
               Cow position:chr18:2151744-2151432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:62-533
               
               
               Cow position:chr18:29957996-29958433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:62-535
               
               
               Cow position:chr18:6881178-6881627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr18:7952394-7951913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 207

               
               
               Conread position:62-535
               
               
               Cow position:chr18:20126473-20126014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:63-319
               
               
               Cow position:chr18:24719487-24719239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:63-323
               
               
               Cow position:chr18:14225565-14225308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):154, 16

               
               
               Conread position:63-362
               
               
               Cow position:chr18:50959669-50959365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):48, 131

               
               
               Conread position:63-532
               
               
               Cow position:chr18:3180590-3180134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:64-240
               
               
               Cow position:chr18:44205917-44206082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):151, 17

               
               
               Conread position:64-267
               
               
               Cow position:chr18:49970470-49970678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):13, 132

               
               
               Conread position:64-288
               
               
               Cow position:chr18:6470269-6470049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:64-534
               
               
               Cow position:chr18:11867518-11867063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 83

               
               
               Conread position:64-535
               
               
               Cow position:chr18:37023360-37023845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:65-278
               
               
               Cow position:chr18:47801920-47802126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:65-299
               
               
               Cow position:chr18:2773209-2773449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:65-299
               
               
               Cow position:chr18:2776712-2776952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:65-317
               
               
               Cow position:chr18:50359502-50359258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:65-355
               
               
               Cow position:chr18:41950391-41950103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 160

               
               
               Conread position:65-363
               
               
               Cow position:chr18:49017661-49017381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):253, 86

               
               
               Conread position:65-380
               
               
               Cow position:chr18:41257736-41258040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):13, 84

               
               
               Conread position:65-381
               
               
               Cow position:chr18:3085329-3085654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):44, 238

               
               
               Conread position:65-456
               
               
               Cow position:chr18:1954400-1954804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 251

               
               
               Conread position:65-520
               
               
               Cow position:chr18:15613686-15614122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:65-535
               
               
               Cow position:chr18:4884341-4884804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:65-535
               
               
               Cow position:chr18:12117675-12118134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 104

               
               
               Conread position:65-535
               
               
               Cow position:chr18:45903718-45904181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 104

               
               
               Conread position:65-535
               
               
               Cow position:chr18:46452704-46453168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:65-535
               
               
               Cow position:chr18:56181280-56181744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:66-271
               
               
               Cow position:chr18:34444560-34444762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:66-298
               
               
               Cow position:chr18:50632268-50632499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):48, 79

               
               
               Conread position:66-530
               
               
               Cow position:chr18:40759397-40758932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:66-533
               
               
               Cow position:chr18:9010882-9010445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:66-535
               
               
               Cow position:chr18:12113191-12113656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 74

               
               
               Conread position:67-299
               
               
               Cow position:chr18:52649160-52649404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:67-382
               
               
               Cow position:chr18:42751411-42751752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:67-402
               
               
               Cow position:chr18:19641150-19640819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:67-402
               
               
               Cow position:chr18:51515090-51515427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:67-457
               
               
               Cow position:chr18:4629219-4628817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-534
               
               
               Cow position:chr18:54572112-54572584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:67-535
               
               
               Cow position:chr18:55120044-55119585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 76

               
               
               Conread position:68-235
               
               
               Cow position:chr18:51413756-51413598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):145, 40

               
               
               Conread position:68-313
               
               
               Cow position:chr18:4626615-4626854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 76

               
               
               Conread position:68-340
               
               
               Cow position:chr18:9040529-9040807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:68-371
               
               
               Cow position:chr18:2146420-2146716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:68-480
               
               
               Cow position:chr18:33896239-33896656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 318

               
               
               Conread position:68-528
               
               
               Cow position:chr18:7650150-7649712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 43

               
               
               Conread position:68-534
               
               
               Cow position:chr18:29065217-29065660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:68-535
               
               
               Cow position:chr18:45104257-45104735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:68-535
               
               
               Cow position:chr18:47512169-47511705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 41

               
               
               Conread position:69-294
               
               
               Cow position:chr18:44917927-44917705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:69-316
               
               
               Cow position:chr18:37189118-37189369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 95

               
               
               Conread position:69-535
               
               
               Cow position:chr18:14586308-14586765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:70-364
               
               
               Cow position:chr18:52402792-52403094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):109, 37

               
               
               Conread position:70-535
               
               
               Cow position:chr18:28657747-28658203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 19

               
               
               Conread position:71-246
               
               
               Cow position:chr18:49441015-49440837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:71-275
               
               
               Cow position:chr18:48407904-48407706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):146, 38

               
               
               Conread position:71-334
               
               
               Cow position:chr18:42953905-42954157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 39

               
               
               Conread position:71-348
               
               
               Cow position:chr18:42212616-42212340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):102, 35

               
               
               Conread position:71-370
               
               
               Cow position:chr18:4489730-4490024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:71-382
               
               
               Cow position:chr18:49841454-49841138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:71-461
               
               
               Cow position:chr18:30341010-30341396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:71-489
               
               
               Cow position:chr18:17390818-17391216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 157

               
               
               Conread position:71-533
               
               
               Cow position:chr18:1144021-1144480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:71-535
               
               
               Cow position:chr18:38985863-38985398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:72-311
               
               
               Cow position:chr18:38937991-38937755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:72-502
               
               
               Cow position:chr18:55710197-55709785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 123

               
               
               Conread position:73-266
               
               
               Cow position:chr18:50004536-50004726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:73-315
               
               
               Cow position:chr18:51383228-51383468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:73-327
               
               
               Cow position:chr18:52414137-52413879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):70, 29

               
               
               Conread position:73-334
               
               
               Cow position:chr18:32251995-32252260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):42, 108

               
               
               Conread position:73-346
               
               
               Cow position:chr18:53039019-53038724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:73-348
               
               
               Cow position:chr18:24508063-24508343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:73-395
               
               
               Cow position:chr18:50095239-50095547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-444
               
               
               Cow position:chr18:1399182-1399554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 179

               
               
               Conread position:73-445
               
               
               Cow position:chr18:11791091-11790730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:73-480
               
               
               Cow position:chr18:10977045-10977444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 68

               
               
               Conread position:73-530
               
               
               Cow position:chr18:39662951-39662501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 126

               
               
               Conread position:73-535
               
               
               Cow position:chr18:10891681-10891238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:73-535
               
               
               Cow position:chr18:10954634-10954185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 37

               
               
               Conread position:73-535
               
               
               Cow position:chr18:28101804-28101337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 74

               
               
               Conread position:73-535
               
               
               Cow position:chr18:31082173-31082609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 233

               
               
               Conread position:73-535
               
               
               Cow position:chr18:55499240-55498777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:74-376
               
               
               Cow position:chr18:37303323-37303010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):37, 69

               
               
               Conread position:74-517
               
               
               Cow position:chr18:46048923-46048490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 82

               
               
               Conread position:74-535
               
               
               Cow position:chr18:9366091-9365623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:75-253
               
               
               Cow position:chr18:4772821-4772999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):140, 36

               
               
               Conread position:75-366
               
               
               Cow position:chr18:55583591-55583294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:75-380
               
               
               Cow position:chr18:23623462-23623771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:76-402
               
               
               Cow position:chr18:24266236-24266573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 70

               
               
               Conread position:79-240
               
               
               Cow position:chr18:44548582-44548744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:79-411
               
               
               Cow position:chr18:48633941-48633623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:79-530
               
               
               Cow position:chr18:33159107-33158670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):29, 67

               
               
               Conread position:80-305
               
               
               Cow position:chr18:47547819-47548049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):63, 120

               
               
               Conread position:82-348
               
               
               Cow position:chr18:35367044-35367291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:82-363
               
               
               Cow position:chr18:35534989-35535266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 58

               
               
               Conread position:82-371
               
               
               Cow position:chr18:53642588-53642880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:82-535
               
               
               Cow position:chr18:12242438-12242001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:86-243
               
               
               Cow position:chr18:47096580-47096428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):127, 58

               
               
               Conread position:88-327
               
               
               Cow position:chr18:14830703-14830928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:88-366
               
               
               Cow position:chr18:41854434-41854714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):20, 105

               
               
               Conread position:88-393
               
               
               Cow position:chr18:51643214-51643517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):23, 58

               
               
               Conread position:89-316
               
               
               Cow position:chr18:22516382-22516609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:90-249
               
               
               Cow position:chr18:306563-306726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 54

               
               
               Conread position:92-534
               
               
               Cow position:chr18:11779804-11779378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:97-535
               
               
               Cow position:chr18:55000594-55001028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:99-370
               
               
               Cow position:chr18:34834640-34834362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 140

               
               
               Conread position:103-412
               
               
               Cow position:chr18:50974148-50974466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):51, 201

               
               
               Conread position:109-402
               
               
               Cow position:chr18:2774005-2774291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 82

               
               
               Conread position:109-535
               
               
               Cow position:chr18:52637396-52637818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 62

               
               
               Conread position:112-433
               
               
               Cow position:chr18:8300153-8299822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:133-528
               
               
               Cow position:chr18:56184045-56183656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 165

               
               
               Conread position:140-348
               
               
               Cow position:chr18:49324335-49324528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:140-445
               
               
               Cow position:chr18:45637313-45637595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):77, 84

               
               
               Conread position:140-535
               
               
               Cow position:chr18:2849166-2849550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 216

               
               
               Conread position:140-535
               
               
               Cow position:chr18:4797071-4796680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 80

               
               
               Conread position:140-535
               
               
               Cow position:chr18:28923742-28924121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 160

               
               
               Conread position:141-295
               
               
               Cow position:chr18:2765352-2765200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):9, 97

               
               
               Conread position:143-499
               
               
               Cow position:chr18:33008168-33007804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 83

               
               
               Conread position:144-317
               
               
               Cow position:chr18:47705334-47705162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 153

               
               
               Conread position:147-528
               
               
               Cow position:chr18:36230629-36230993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:149-535
               
               
               Cow position:chr18:44801795-44802172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 146

               
               
               Conread position:153-535
               
               
               Cow position:chr18:34527002-34527387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 148

               
               
               Conread position:158-315
               
               
               Cow position:chr18:23505416-23505257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:158-360
               
               
               Cow position:chr18:52406777-52406583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 75

               
               
               Conread position:163-441
               
               
               Cow position:chr18:54111289-54111020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):13, 168

               
               
               Conread position:166-513
               
               
               Cow position:chr18:29760104-29759785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):50, 118

               
               
               Conread position:166-535
               
               
               Cow position:chr18:44483697-44484047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:168-309
               
               
               Cow position:chr18:49981364-49981506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:168-381
               
               
               Cow position:chr18:25006418-25006628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:168-402
               
               
               Cow position:chr18:11578149-11577928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):50, 124

               
               
               Conread position:168-535
               
               
               Cow position:chr18:49100293-49100661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 129

               
               
               Conread position:169-296
               
               
               Cow position:chr18:16378997-16378869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:169-340
               
               
               Cow position:chr18:17660486-17660654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):48, 129

               
               
               Conread position:169-374
               
               
               Cow position:chr18:31711488-31711698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:169-403
               
               
               Cow position:chr18:51594730-51594963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):48, 129

               
               
               Conread position:169-428
               
               
               Cow position:chr18:51190525-51190777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:169-523
               
               
               Cow position:chr18:30794500-30794157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:169-526
               
               
               Cow position:chr18:3209796-3209438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:169-535
               
               
               Cow position:chr18:19620015-19619658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:169-535
               
               
               Cow position:chr18:37002706-37002340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 128

               
               
               Conread position:169-535
               
               
               Cow position:chr18:46727662-46727304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:171-402
               
               
               Cow position:chr18:52855127-52854890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:171-516
               
               
               Cow position:chr18:24855772-24856116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:171-530
               
               
               Cow position:chr18:55787993-55787643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 48

               
               
               Conread position:171-533
               
               
               Cow position:chr18:19273024-19273388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):46, 192

               
               
               Conread position:171-533
               
               
               Cow position:chr18:25647176-25647536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:171-535
               
               
               Cow position:chr18:7359817-7359445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):46, 139

               
               
               Conread position:171-535
               
               
               Cow position:chr18:11685054-11684701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 180

               
               
               Conread position:172-430
               
               
               Cow position:chr18:16686264-16686525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:173-333
               
               
               Cow position:chr18:9176969-9176811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:174-535
               
               
               Cow position:chr18:13507671-13508018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 63

               
               
               Conread position:174-535
               
               
               Cow position:chr18:23476618-23476959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:175-534
               
               
               Cow position:chr18:55461641-55461997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:176-411
               
               
               Cow position:chr18:4331027-4330785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:177-535
               
               
               Cow position:chr18:4182122-4182479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:177-535
               
               
               Cow position:chr18:15880773-15881146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 254

               
               
               Conread position:177-535
               
               
               Cow position:chr18:38687146-38686806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:177-535
               
               
               Cow position:chr18:51212249-51211893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:178-422
               
               
               Cow position:chr18:21740750-21740990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 118

               
               
               Conread position:190-530
               
               
               Cow position:chr18:21681920-21682254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):99, 152

               
               
               Conread position:193-535
               
               
               Cow position:chr18:5487292-5486962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:196-530
               
               
               Cow position:chr18:50700734-50700381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 286

               
               
               Conread position:196-535
               
               
               Cow position:chr18:51500028-51500371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):94, 16

               
               
               Conread position:201-436
               
               
               Cow position:chr18:52703804-52704047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 177

               
               
               Conread position:201-530
               
               
               Cow position:chr18:25206146-25206476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:203-443
               
               
               Cow position:chr18:55806593-55806833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:203-530
               
               
               Cow position:chr18:6609817-6610142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 97

               
               
               Conread position:207-523
               
               
               Cow position:chr18:32773915-32773602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):10, 81

               
               
               Conread position:216-481
               
               
               Cow position:chr18:896056-895793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:216-535
               
               
               Cow position:chr18:43065556-43065220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):82, 120

               
               
               Conread position:219-535
               
               
               Cow position:chr18:11832143-11831849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):292, 69

               
               
               Conread position:223-535
               
               
               Cow position:chr18:14048728-14048424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 160

               
               
               Conread position:227-402
               
               
               Cow position:chr18:29991495-29991679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:238-535
               
               
               Cow position:chr18:44548908-44549196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 194

               
               
               Conread position:24-393
               
               
               Cow position:chr19:23378919-23378557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 123

               
               
               Conread position:34-535
               
               
               Cow position:chr19:729520-729998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 29

               
               
               Conread position:42-283
               
               
               Cow position:chr19:52728835-52728593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):31, 105

               
               
               Conread position:42-435
               
               
               Cow position:chr19:26754259-26753865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:45-398
               
               
               Cow position:chr19:28924985-28924624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):9, 122

               
               
               Conread position:46-534
               
               
               Cow position:chr19:10755517-10755044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:48-225
               
               
               Cow position:chr19:41388977-41388801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):61, 121

               
               
               Conread position:48-413
               
               
               Cow position:chr19:8869787-8869429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):139, 49

               
               
               Conread position:48-450
               
               
               Cow position:chr19:24759672-24760068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:48-533
               
               
               Cow position:chr19:5912739-5913216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 130

               
               
               Conread position:49-533
               
               
               Cow position:chr19:12602019-12601546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:334
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:50-304
               
               
               Cow position:chr19:38732351-38732099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:51-416
               
               
               Cow position:chr19:15853141-15852795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 104

               
               
               Conread position:51-535
               
               
               Cow position:chr19:20661198-20661685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 207

               
               
               Conread position:52-334
               
               
               Cow position:chr19:34757776-34758068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):20, 259

               
               
               Conread position:52-520
               
               
               Cow position:chr19:7053132-7053586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:53-353
               
               
               Cow position:chr19:23889271-23889571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:53-382
               
               
               Cow position:chr19:33518599-33518933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 29

               
               
               Conread position:54-535
               
               
               Cow position:chr19:14348234-14347742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:54-535
               
               
               Cow position:chr19:36845453-36844981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 25

               
               
               Conread position:55-292
               
               
               Cow position:chr19:25835129-25835355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:55-340
               
               
               Cow position:chr19:11559824-11560118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:55-376
               
               
               Cow position:chr19:23832389-23832704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 18

               
               
               Conread position:55-397
               
               
               Cow position:chr19:27940586-27940249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:55-488
               
               
               Cow position:chr19:24137475-24137038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 54

               
               
               Conread position:55-520
               
               
               Cow position:chr19:32754738-32754262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:55-521
               
               
               Cow position:chr19:38842349-38842806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:55-535
               
               
               Cow position:chr19:44143731-44144176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:326
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:56-288
               
               
               Cow position:chr19:26167706-26167936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):51, 61

               
               
               Conread position:56-391
               
               
               Cow position:chr19:1650713-1650381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:56-391
               
               
               Cow position:chr19:52187694-52187366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):20, 88

               
               
               Conread position:56-466
               
               
               Cow position:chr19:41497791-41498209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:290
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:56-522
               
               
               Cow position:chr19:41946384-41945935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 45

               
               
               Conread position:56-523
               
               
               Cow position:chr19:52456541-52457017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:56-534
               
               
               Cow position:chr19:19431421-19430964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:332
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):158, 9

               
               
               Conread position:57-290
               
               
               Cow position:chr19:44572295-44572057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:57-327
               
               
               Cow position:chr19:17355064-17354795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:57-430
               
               
               Cow position:chr19:53899932-53900315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:57-496
               
               
               Cow position:chr19:25382474-25382933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:306
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):48, 140

               
               
               Conread position:57-534
               
               
               Cow position:chr19:1968113-1968571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 94

               
               
               Conread position:58-240
               
               
               Cow position:chr19:17260115-17259931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:58-323
               
               
               Cow position:chr19:56088245-56088495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):243, 24

               
               
               Conread position:60-305
               
               
               Cow position:chr19:10930221-10930455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):155, 81

               
               
               Conread position:60-306
               
               
               Cow position:chr19:26269021-26269270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 5

               
               
               Conread position:60-358
               
               
               Cow position:chr19:18054057-18054340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:60-461
               
               
               Cow position:chr19:25673311-25673717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):8, 117

               
               
               Conread position:60-533
               
               
               Cow position:chr19:33033240-33033712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:60-535
               
               
               Cow position:chr19:23304285-23304762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:61-307
               
               
               Cow position:chr19:23756547-23756785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:61-401
               
               
               Cow position:chr19:25035705-25035348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 231

               
               
               Conread position:61-527
               
               
               Cow position:chr19:3621631-3621168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:62-248
               
               
               Cow position:chr19:14823457-14823272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 45

               
               
               Conread position:62-253
               
               
               Cow position:chr19:4485945-4486141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:62-304
               
               
               Cow position:chr19:25665785-25665550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:62-346
               
               
               Cow position:chr19:7147852-7148146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):16, 143

               
               
               Conread position:62-430
               
               
               Cow position:chr19:35107720-35107362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 84

               
               
               Conread position:62-517
               
               
               Cow position:chr19:43413981-43413532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-529
               
               
               Cow position:chr19:41024424-41023967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:62-534
               
               
               Cow position:chr19:8128512-8128049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 67

               
               
               Conread position:62-534
               
               
               Cow position:chr19:39576369-39576836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:62-535
               
               
               Cow position:chr19:1355808-1355345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:319
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:62-535
               
               
               Cow position:chr19:22765815-22765349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 59

               
               
               Conread position:63-295
               
               
               Cow position:chr19:34654408-34654641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:63-321
               
               
               Cow position:chr19:32437702-32437955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 122

               
               
               Conread position:63-337
               
               
               Cow position:chr19:10238938-10238664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 106

               
               
               Conread position:63-348
               
               
               Cow position:chr19:25763309-25763030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:63-373
               
               
               Cow position:chr19:19549354-19549658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:63-487
               
               
               Cow position:chr19:16621153-16621574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:63-504
               
               
               Cow position:chr19:8864943-8864511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:63-535
               
               
               Cow position:chr19:42695191-42694720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:64-261
               
               
               Cow position:chr19:23559586-23559385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 83

               
               
               Conread position:64-283
               
               
               Cow position:chr19:39981940-39981717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:64-359
               
               
               Cow position:chr19:55583737-55583432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):50, 228

               
               
               Conread position:64-535
               
               
               Cow position:chr19:55951964-55952411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 18

               
               
               Conread position:65-262
               
               
               Cow position:chr19:6855117-6854923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):45, 89

               
               
               Conread position:65-397
               
               
               Cow position:chr19:56004044-56003725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:65-491
               
               
               Cow position:chr19:33903226-33903645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:65-515
               
               
               Cow position:chr19:51750968-51751418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 28

               
               
               Conread position:65-529
               
               
               Cow position:chr19:21199348-21198865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:65-530
               
               
               Cow position:chr19:26057351-26057811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:66-240
               
               
               Cow position:chr19:20694063-20693894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:66-360
               
               
               Cow position:chr19:39584145-39583844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:66-366
               
               
               Cow position:chr19:54048236-54048532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):151, 15

               
               
               Conread position:66-447
               
               
               Cow position:chr19:51307348-51306957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):45, 89

               
               
               Conread position:66-529
               
               
               Cow position:chr19:56149869-56150329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 43

               
               
               Conread position:66-535
               
               
               Cow position:chr19:36222133-36221668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):11, 131

               
               
               Conread position:66-535
               
               
               Cow position:chr19:39057447-39056977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 25

               
               
               Conread position:66-535
               
               
               Cow position:chr19:39751667-39751213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:67-344
               
               
               Cow position:chr19:47184881-47185161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):10, 79

               
               
               Conread position:67-348
               
               
               Cow position:chr19:12052648-12052930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 161

               
               
               Conread position:67-348
               
               
               Cow position:chr19:12067943-12067661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 161

               
               
               Conread position:67-371
               
               
               Cow position:chr19:52458324-52458627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):44, 127

               
               
               Conread position:67-382
               
               
               Cow position:chr19:6278384-6278064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-387
               
               
               Cow position:chr19:2220874-2221202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:67-436
               
               
               Cow position:chr19:47453628-47453262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:67-498
               
               
               Cow position:chr19:51620980-51621413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:292
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:67-535
               
               
               Cow position:chr19:14253833-14253366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:67-535
               
               
               Cow position:chr19:24145219-24144750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 77

               
               
               Conread position:68-306
               
               
               Cow position:chr19:30007382-30007152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):147, 114

               
               
               Conread position:68-398
               
               
               Cow position:chr19:24005848-24005532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:68-461
               
               
               Cow position:chr19:22043160-22043542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:68-529
               
               
               Cow position:chr19:53371697-53372158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:315
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):36, 110

               
               
               Conread position:68-534
               
               
               Cow position:chr19:33912429-33912900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:68-535
               
               
               Cow position:chr19:16096354-16096820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 98

               
               
               Conread position:68-535
               
               
               Cow position:chr19:23786365-23785920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:68-535
               
               
               Cow position:chr19:24062471-24062029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:68-535
               
               
               Cow position:chr19:38393005-38392529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:69-520
               
               
               Cow position:chr19:2589709-2589258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:69-535
               
               
               Cow position:chr19:54943162-54942707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:313
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:70-307
               
               
               Cow position:chr19:34608001-34608240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):13, 101

               
               
               Conread position:70-412
               
               
               Cow position:chr19:42904185-42903859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:70-533
               
               
               Cow position:chr19:47772739-47773177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):154, 36

               
               
               Conread position:71-347
               
               
               Cow position:chr19:26222812-26222531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 128

               
               
               Conread position:71-349
               
               
               Cow position:chr19:11646756-11646488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:71-482
               
               
               Cow position:chr19:17972075-17972473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 17

               
               
               Conread position:71-533
               
               
               Cow position:chr19:15887122-15887588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:71-535
               
               
               Cow position:chr19:15438299-15437841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:316
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:71-535
               
               
               Cow position:chr19:25726691-25727145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 62

               
               
               Conread position:71-535
               
               
               Cow position:chr19:48723227-48722758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 216

               
               
               Conread position:72-362
               
               
               Cow position:chr19:16104893-16105181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):145, 80

               
               
               Conread position:73-273
               
               
               Cow position:chr19:53189658-53189867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:73-306
               
               
               Cow position:chr19:37466869-37467104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:73-319
               
               
               Cow position:chr19:28810124-28810373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:73-323
               
               
               Cow position:chr19:23088173-23087926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:73-344
               
               
               Cow position:chr19:51970064-51970324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:73-347
               
               
               Cow position:chr19:8965463-8965180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 177

               
               
               Conread position:73-348
               
               
               Cow position:chr19:33575711-33575440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:73-358
               
               
               Cow position:chr19:40126973-40127261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-384
               
               
               Cow position:chr19:49221430-49221731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 90

               
               
               Conread position:73-398
               
               
               Cow position:chr19:19489627-19489953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:73-417
               
               
               Cow position:chr19:18129752-18129406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 164

               
               
               Conread position:73-433
               
               
               Cow position:chr19:15719436-15719787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 80

               
               
               Conread position:73-534
               
               
               Cow position:chr19:50162187-50161749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:73-535
               
               
               Cow position:chr19:34166560-34166075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:73-535
               
               
               Cow position:chr19:44838748-44839167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:74-243
               
               
               Cow position:chr19:12686020-12685851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:74-305
               
               
               Cow position:chr19:40002166-40002395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:74-326
               
               
               Cow position:chr19:10538367-10538613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:75-340
               
               
               Cow position:chr19:42767913-42768174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:75-348
               
               
               Cow position:chr19:34420599-34420330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:75-381
               
               
               Cow position:chr19:24453320-24453627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 8

               
               
               Conread position:75-432
               
               
               Cow position:chr19:15789895-15789540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:75-530
               
               
               Cow position:chr19:33748042-33747590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:305
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:76-268
               
               
               Cow position:chr19:36978460-36978263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:76-337
               
               
               Cow position:chr19:24693193-24692935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):138, 65

               
               
               Conread position:76-460
               
               
               Cow position:chr19:48960582-48960199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:79-245
               
               
               Cow position:chr19:39585918-39586091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:79-256
               
               
               Cow position:chr19:33233768-33233591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:79-327
               
               
               Cow position:chr19:12115153-12114904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:79-434
               
               
               Cow position:chr19:34288201-34287854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:79-444
               
               
               Cow position:chr19:36139040-36138677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:80-535
               
               
               Cow position:chr19:25086694-25086274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:81-283
               
               
               Cow position:chr19:25832016-25832218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:81-430
               
               
               Cow position:chr19:47859130-47859482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 106

               
               
               Conread position:82-533
               
               
               Cow position:chr19:46455024-46454585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:85-292
               
               
               Cow position:chr19:32539499-32539698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:85-379
               
               
               Cow position:chr19:25397879-25397578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:85-534
               
               
               Cow position:chr19:10186687-10186233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:86-277
               
               
               Cow position:chr19:19916244-19916433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:86-510
               
               
               Cow position:chr19:50026065-50025648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 105

               
               
               Conread position:86-535
               
               
               Cow position:chr19:10213847-10213403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:88-353
               
               
               Cow position:chr19:22872772-22873041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 107

               
               
               Conread position:88-455
               
               
               Cow position:chr19:25526456-25526092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 65

               
               
               Conread position:88-529
               
               
               Cow position:chr19:53623746-53623301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):23, 156

               
               
               Conread position:89-346
               
               
               Cow position:chr19:13488330-13488586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):17, 57

               
               
               Conread position:89-387
               
               
               Cow position:chr19:55431410-55431102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 118

               
               
               Conread position:89-394
               
               
               Cow position:chr19:42517078-42517388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:89-427
               
               
               Cow position:chr19:21817142-21816798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):20, 105

               
               
               Conread position:89-534
               
               
               Cow position:chr19:21378290-21378733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 349

               
               
               Conread position:89-535
               
               
               Cow position:chr19:14472602-14473046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:303
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:90-360
               
               
               Cow position:chr19:33988244-33987968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:90-535
               
               
               Cow position:chr19:41585147-41584706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 213

               
               
               Conread position:91-242
               
               
               Cow position:chr19:51294111-51294264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:91-338
               
               
               Cow position:chr19:33913704-33913451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):20, 82

               
               
               Conread position:93-344
               
               
               Cow position:chr19:12645475-12645722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):85, 57

               
               
               Conread position:93-534
               
               
               Cow position:chr19:39103841-39104274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:304
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):18, 96

               
               
               Conread position:98-425
               
               
               Cow position:chr19:54121432-54121118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:104-363
               
               
               Cow position:chr19:56061037-56061296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:104-382
               
               
               Cow position:chr19:10929604-10929322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:104-488
               
               
               Cow position:chr19:55325023-55324653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 54

               
               
               Conread position:104-535
               
               
               Cow position:chr19:39246063-39245632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:109-355
               
               
               Cow position:chr19:17776331-17776090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:109-461
               
               
               Cow position:chr19:22039926-22039573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:110-533
               
               
               Cow position:chr19:26087350-26086929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):72, 80

               
               
               Conread position:116-313
               
               
               Cow position:chr19:24253157-24253348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 16

               
               
               Conread position:128-535
               
               
               Cow position:chr19:31846411-31846810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:133-296
               
               
               Cow position:chr19:19180222-19180387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 162

               
               
               Conread position:133-482
               
               
               Cow position:chr19:52735241-52734903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):37, 121

               
               
               Conread position:141-402
               
               
               Cow position:chr19:4800867-4800603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):20, 153

               
               
               Conread position:142-418
               
               
               Cow position:chr19:39485440-39485164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):200, 25

               
               
               Conread position:143-362
               
               
               Cow position:chr19:3834393-3834176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:143-535
               
               
               Cow position:chr19:12036384-12036772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):59, 51

               
               
               Conread position:152-533
               
               
               Cow position:chr19:20670796-20671167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:153-512
               
               
               Cow position:chr19:22798964-22799327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 118

               
               
               Conread position:153-533
               
               
               Cow position:chr19:8332413-8332029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 261

               
               
               Conread position:155-457
               
               
               Cow position:chr19:52480097-52479810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:156-535
               
               
               Cow position:chr19:56063320-56063697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):58, 148

               
               
               Conread position:160-535
               
               
               Cow position:chr19:15067902-15068261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 139

               
               
               Conread position:162-530
               
               
               Cow position:chr19:30534031-30533679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 44

               
               
               Conread position:162-535
               
               
               Cow position:chr19:27612066-27612435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 197

               
               
               Conread position:163-533
               
               
               Cow position:chr19:18749974-18750346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:167-533
               
               
               Cow position:chr19:52773073-52773442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 100

               
               
               Conread position:168-514
               
               
               Cow position:chr19:34001304-34000964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 132

               
               
               Conread position:168-523
               
               
               Cow position:chr19:20310542-20310886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 77

               
               
               Conread position:168-531
               
               
               Cow position:chr19:6049579-6049925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 75

               
               
               Conread position:168-535
               
               
               Cow position:chr19:21363340-21363709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 283

               
               
               Conread position:169-445
               
               
               Cow position:chr19:25655130-25655416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:169-446
               
               
               Cow position:chr19:7032022-7032298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:169-457
               
               
               Cow position:chr19:25628040-25628326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 176

               
               
               Conread position:169-532
               
               
               Cow position:chr19:51230728-51231080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 129

               
               
               Conread position:169-533
               
               
               Cow position:chr19:8375206-8375567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 271

               
               
               Conread position:169-535
               
               
               Cow position:chr19:14593152-14592783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 288

               
               
               Conread position:169-535
               
               
               Cow position:chr19:34619933-34620302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 264

               
               
               Conread position:170-524
               
               
               Cow position:chr19:55967607-55967946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):47, 127

               
               
               Conread position:170-530
               
               
               Cow position:chr19:5656029-5656373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:170-535
               
               
               Cow position:chr19:36060033-36059664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 179

               
               
               Conread position:171-530
               
               
               Cow position:chr19:33469115-33468761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 157

               
               
               Conread position:171-535
               
               
               Cow position:chr19:19919368-19919725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:171-535
               
               
               Cow position:chr19:24358149-24358491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 67

               
               
               Conread position:173-380
               
               
               Cow position:chr19:11212307-11212516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:177-311
               
               
               Cow position:chr19:37633137-37633272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:177-533
               
               
               Cow position:chr19:47110129-47109777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):40, 128

               
               
               Conread position:179-381
               
               
               Cow position:chr19:13757337-13757131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:179-535
               
               
               Cow position:chr19:4445536-4445888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:180-315
               
               
               Cow position:chr19:45396432-45396569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:185-535
               
               
               Cow position:chr19:35742242-35741889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 212

               
               
               Conread position:190-305
               
               
               Cow position:chr19:18892042-18892158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:193-522
               
               
               Cow position:chr19:53657964-53657645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):23, 150

               
               
               Conread position:197-455
               
               
               Cow position:chr19:6849126-6849392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):5, 102

               
               
               Conread position:197-528
               
               
               Cow position:chr19:12711806-12712141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):5, 68

               
               
               Conread position:206-535
               
               
               Cow position:chr19:38637759-38638069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):10, 87

               
               
               Conread position:209-535
               
               
               Cow position:chr19:17478903-17479228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:211-348
               
               
               Cow position:chr19:14469979-14470120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:213-346
               
               
               Cow position:chr19:35756687-35756552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):98, 83

               
               
               Conread position:216-535
               
               
               Cow position:chr19:31874169-31873849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):63, 233

               
               
               Conread position:238-531
               
               
               Cow position:chr19:15767229-15766952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):70, 92

               
               
               Conread position:242-532
               
               
               Cow position:chr19:20693522-20693235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 220

               
               
               Conread position:244-535
               
               
               Cow position:chr19:46918870-46918573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:246-535
               
               
               Cow position:chr19:36176767-36176478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 173

               
               
               Conread position:248-535
               
               
               Cow position:chr19:1505145-1504875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 131

               
               
               Conread position:260-534
               
               
               Cow position:chr19:35076480-35076754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:11-314
               
               
               Cow position:chr2:42978714-42979018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:22-238
               
               
               Cow position:chr2:16751619-16751841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 175

               
               
               Conread position:32-535
               
               
               Cow position:chr2:77467213-77467713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 107

               
               
               Conread position:35-321
               
               
               Cow position:chr2:62762084-62761787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:35-450
               
               
               Cow position:chr2:47065354-47064945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):74, 213

               
               
               Conread position:39-502
               
               
               Cow position:chr2:38362145-38362594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 33

               
               
               Conread position:39-535
               
               
               Cow position:chr2:49428623-49428130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 158

               
               
               Conread position:42-245
               
               
               Cow position:chr2:16480981-16481182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:42-332
               
               
               Cow position:chr2:43729223-43729521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 18

               
               
               Conread position:42-434
               
               
               Cow position:chr2:58687167-58686778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:43-535
               
               
               Cow position:chr2:40728593-40728111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:336
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:44-334
               
               
               Cow position:chr2:21410463-21410159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:44-534
               
               
               Cow position:chr2:29779301-29779788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:325
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:45-246
               
               
               Cow position:chr2:37058941-37059139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):157, 6

               
               
               Conread position:45-305
               
               
               Cow position:chr2:43991001-43990743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:46-535
               
               
               Cow position:chr2:76562354-76561856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:47-377
               
               
               Cow position:chr2:50449679-50450009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 97

               
               
               Conread position:47-428
               
               
               Cow position:chr2:7573294-7573653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 13

               
               
               Conread position:47-534
               
               
               Cow position:chr2:21003401-21002932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 65

               
               
               Conread position:48-306
               
               
               Cow position:chr2:44620819-44620555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 124

               
               
               Conread position:49-345
               
               
               Cow position:chr2:13672745-13672456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 97

               
               
               Conread position:49-527
               
               
               Cow position:chr2:65269463-65269945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:50-277
               
               
               Cow position:chr2:14884470-14884240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):27, 64

               
               
               Conread position:50-358
               
               
               Cow position:chr2:39371642-39371337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 96

               
               
               Conread position:50-380
               
               
               Cow position:chr2:44007657-44007314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:51-299
               
               
               Cow position:chr2:43591149-43591396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):54, 11

               
               
               Conread position:51-305
               
               
               Cow position:chr2:18589307-18589560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):8, 76

               
               
               Conread position:51-354
               
               
               Cow position:chr2:8821469-8821155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):60, 275

               
               
               Conread position:51-418
               
               
               Cow position:chr2:13036347-13035972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:51-482
               
               
               Cow position:chr2:40484279-40484723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:51-515
               
               
               Cow position:chr2:18997943-18997499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:51-516
               
               
               Cow position:chr2:75227425-75226963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:51-530
               
               
               Cow position:chr2:25283337-25282856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:51-533
               
               
               Cow position:chr2:33553954-33554414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:52-256
               
               
               Cow position:chr2:16668158-16667957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 36

               
               
               Conread position:52-304
               
               
               Cow position:chr2:44198104-44197852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:52-337
               
               
               Cow position:chr2:68292994-68292708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:52-514
               
               
               Cow position:chr2:11599645-11599206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:52-534
               
               
               Cow position:chr2:63250188-63250645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:53-267
               
               
               Cow position:chr2:9062906-9062686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 143

               
               
               Conread position:53-457
               
               
               Cow position:chr2:34749772-34750166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:53-493
               
               
               Cow position:chr2:19294809-19294388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 9

               
               
               Conread position:54-338
               
               
               Cow position:chr2:81984289-81984002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:54-475
               
               
               Cow position:chr2:29122107-29121691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:54-502
               
               
               Cow position:chr2:68970971-68970511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 145

               
               
               Conread position:54-520
               
               
               Cow position:chr2:15058836-15059309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:54-535
               
               
               Cow position:chr2:32048700-32048232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:55-244
               
               
               Cow position:chr2:3773107-3773295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:55-282
               
               
               Cow position:chr2:29394784-29395015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:55-318
               
               
               Cow position:chr2:15219331-15219073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):115, 51

               
               
               Conread position:55-341
               
               
               Cow position:chr2:6304065-6304358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 140

               
               
               Conread position:55-348
               
               
               Cow position:chr2:46967975-46968262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:55-362
               
               
               Cow position:chr2:58479471-58479763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:55-375
               
               
               Cow position:chr2:15348616-15348291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:55-390
               
               
               Cow position:chr2:72309776-72310114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:55-412
               
               
               Cow position:chr2:72003730-72004083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):56, 7

               
               
               Conread position:55-423
               
               
               Cow position:chr2:24217996-24218363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:55-436
               
               
               Cow position:chr2:26170967-26170582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:55-528
               
               
               Cow position:chr2:49467849-49467370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:55-529
               
               
               Cow position:chr2:16839859-16839383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 138

               
               
               Conread position:55-529
               
               
               Cow position:chr2:80241964-80242439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:322
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-530
               
               
               Cow position:chr2:33496975-33497455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 142

               
               
               Conread position:55-533
               
               
               Cow position:chr2:41148095-41147622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 140

               
               
               Conread position:55-535
               
               
               Cow position:chr2:41158177-41157707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:319
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):281, 18

               
               
               Conread position:56-238
               
               
               Cow position:chr2:28873110-28872930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:56-288
               
               
               Cow position:chr2:2827964-2827731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):50, 6

               
               
               Conread position:56-371
               
               
               Cow position:chr2:40257194-40257511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:56-383
               
               
               Cow position:chr2:60091214-60091536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 89

               
               
               Conread position:56-444
               
               
               Cow position:chr2:46052720-46052337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:56-512
               
               
               Cow position:chr2:46033552-46033099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:56-534
               
               
               Cow position:chr2:79742-80214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:56-534
               
               
               Cow position:chr2:39566473-39566931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:315
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:56-535
               
               
               Cow position:chr2:84480282-84480776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 6

               
               
               Conread position:57-313
               
               
               Cow position:chr2:9725882-9726135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:57-526
               
               
               Cow position:chr2:39590476-39590008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 76

               
               
               Conread position:57-533
               
               
               Cow position:chr2:67595797-67596270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:319
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):54, 131

               
               
               Conread position:57-534
               
               
               Cow position:chr2:56828339-56828823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 91

               
               
               Conread position:57-535
               
               
               Cow position:chr2:36963737-36963278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 8

               
               
               Conread position:58-535
               
               
               Cow position:chr2:22371736-22372201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:59-321
               
               
               Cow position:chr2:40373193-40373438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:59-533
               
               
               Cow position:chr2:45624249-45623771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 256

               
               
               Conread position:59-534
               
               
               Cow position:chr2:33250869-33251330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 112

               
               
               Conread position:60-410
               
               
               Cow position:chr2:12682441-12682796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):11, 136

               
               
               Conread position:60-529
               
               
               Cow position:chr2:58074130-58074597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 5

               
               
               Conread position:60-535
               
               
               Cow position:chr2:45478385-45478850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 84

               
               
               Conread position:61-261
               
               
               Cow position:chr2:75462538-75462343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:61-276
               
               
               Cow position:chr2:6952685-6952468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:61-311
               
               
               Cow position:chr2:15734636-15734380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 117

               
               
               Conread position:61-340
               
               
               Cow position:chr2:28301419-28301141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):8, 84

               
               
               Conread position:61-530
               
               
               Cow position:chr2:76313653-76314106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:321
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:61-535
               
               
               Cow position:chr2:13580454-13579987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 91

               
               
               Conread position:61-535
               
               
               Cow position:chr2:27173568-27173111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 12

               
               
               Conread position:61-535
               
               
               Cow position:chr2:38886426-38886909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 86

               
               
               Conread position:62-253
               
               
               Cow position:chr2:9936440-9936633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):104, 131

               
               
               Conread position:62-259
               
               
               Cow position:chr2:63568924-63568725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:62-283
               
               
               Cow position:chr2:72315597-72315819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:62-293
               
               
               Cow position:chr2:47879450-47879224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:62-300
               
               
               Cow position:chr2:30954376-30954620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):14, 224

               
               
               Conread position:62-307
               
               
               Cow position:chr2:41007328-41007571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):52, 89

               
               
               Conread position:62-327
               
               
               Cow position:chr2:10574345-10574605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):49, 139

               
               
               Conread position:62-337
               
               
               Cow position:chr2:46162167-46161894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 70

               
               
               Conread position:62-337
               
               
               Cow position:chr2:82116299-82116029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:62-340
               
               
               Cow position:chr2:41462212-41462490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:62-443
               
               
               Cow position:chr2:69199109-69199483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:62-478
               
               
               Cow position:chr2:1638836-1638400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 195

               
               
               Conread position:62-490
               
               
               Cow position:chr2:44051523-44051093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:62-524
               
               
               Cow position:chr2:47090980-47090519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 115

               
               
               Conread position:62-529
               
               
               Cow position:chr2:24393477-24393939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 205

               
               
               Conread position:62-529
               
               
               Cow position:chr2:56350697-56351167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 98

               
               
               Conread position:62-530
               
               
               Cow position:chr2:13369870-13369410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:62-530
               
               
               Cow position:chr2:45784964-45784485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 247

               
               
               Conread position:62-535
               
               
               Cow position:chr2:14634398-14633931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:317
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:62-535
               
               
               Cow position:chr2:32264179-32264652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 49

               
               
               Conread position:62-535
               
               
               Cow position:chr2:47115689-47116169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:62-535
               
               
               Cow position:chr2:51594989-51594509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 245

               
               
               Conread position:62-535
               
               
               Cow position:chr2:59992033-59992495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:329
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:62-535
               
               
               Cow position:chr2:66959892-66959419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:325
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:63-299
               
               
               Cow position:chr2:53491247-53491474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):120, 46

               
               
               Conread position:63-340
               
               
               Cow position:chr2:8083812-8083527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):48, 131

               
               
               Conread position:63-535
               
               
               Cow position:chr2:42183577-42183115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:64-315
               
               
               Cow position:chr2:61561821-61562064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:64-365
               
               
               Cow position:chr2:1709180-1708882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 107

               
               
               Conread position:64-534
               
               
               Cow position:chr2:19211845-19212298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 66

               
               
               Conread position:64-534
               
               
               Cow position:chr2:68190436-68190891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:64-535
               
               
               Cow position:chr2:54700670-54700193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 116

               
               
               Conread position:64-535
               
               
               Cow position:chr2:71437164-71437640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 109

               
               
               Conread position:65-262
               
               
               Cow position:chr2:68239414-68239227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:65-392
               
               
               Cow position:chr2:48634838-48635161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:65-416
               
               
               Cow position:chr2:46136960-46137298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:65-418
               
               
               Cow position:chr2:32660393-32660031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:65-490
               
               
               Cow position:chr2:29160121-29159692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 100

               
               
               Conread position:65-535
               
               
               Cow position:chr2:41248778-41248312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 74

               
               
               Conread position:65-535
               
               
               Cow position:chr2:41452445-41451974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:65-535
               
               
               Cow position:chr2:53650226-53649770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 17

               
               
               Conread position:65-535
               
               
               Cow position:chr2:55526559-55527018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:66-371
               
               
               Cow position:chr2:69350355-69350664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:66-392
               
               
               Cow position:chr2:47753382-47753737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:66-409
               
               
               Cow position:chr2:44505779-44506125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 281

               
               
               Conread position:66-530
               
               
               Cow position:chr2:43577568-43578048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 136

               
               
               Conread position:66-533
               
               
               Cow position:chr2:20947578-20947119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:66-535
               
               
               Cow position:chr2:37009613-37009162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:67-312
               
               
               Cow position:chr2:50913805-50914046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 104

               
               
               Conread position:67-401
               
               
               Cow position:chr2:17841776-17842102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:67-504
               
               
               Cow position:chr2:33531737-33532172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:68-294
               
               
               Cow position:chr2:46053682-46053452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:68-340
               
               
               Cow position:chr2:22042763-22042472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 200

               
               
               Conread position:68-389
               
               
               Cow position:chr2:45642282-45642604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:68-412
               
               
               Cow position:chr2:17805559-17805900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:68-424
               
               
               Cow position:chr2:54968214-54967857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:68-533
               
               
               Cow position:chr2:45498994-45499451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:68-535
               
               
               Cow position:chr2:27337569-27338030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:69-337
               
               
               Cow position:chr2:53500838-53501096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:69-348
               
               
               Cow position:chr2:45597188-45596909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 76

               
               
               Conread position:69-530
               
               
               Cow position:chr2:21382642-21383108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:69-532
               
               
               Cow position:chr2:74249015-74249480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 128

               
               
               Conread position:69-533
               
               
               Cow position:chr2:30642451-30642924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:69-533
               
               
               Cow position:chr2:44065773-44065338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:69-535
               
               
               Cow position:chr2:62743803-62744263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:70-292
               
               
               Cow position:chr2:51099767-51099991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:70-461
               
               
               Cow position:chr2:13001122-13000736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 123

               
               
               Conread position:70-535
               
               
               Cow position:chr2:13002003-13001555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:71-306
               
               
               Cow position:chr2:46164295-46164530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:71-338
               
               
               Cow position:chr2:66038689-66038422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):100, 86

               
               
               Conread position:71-530
               
               
               Cow position:chr2:31784133-31783691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:71-533
               
               
               Cow position:chr2:972023-971589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 17

               
               
               Conread position:71-534
               
               
               Cow position:chr2:43995135-43994679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 11

               
               
               Conread position:71-535
               
               
               Cow position:chr2:38965815-38965363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 72

               
               
               Conread position:72-299
               
               
               Cow position:chr2:40703466-40703689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):144, 71

               
               
               Conread position:72-305
               
               
               Cow position:chr2:28330546-28330776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:72-323
               
               
               Cow position:chr2:50905497-50905758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:72-397
               
               
               Cow position:chr2:60691085-60690763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:72-535
               
               
               Cow position:chr2:46188892-46189346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:73-289
               
               
               Cow position:chr2:1476612-1476397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:73-297
               
               
               Cow position:chr2:5604724-5604504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:73-304
               
               
               Cow position:chr2:37619706-37619942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:73-312
               
               
               Cow position:chr2:1335487-1335729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):19, 229

               
               
               Conread position:73-348
               
               
               Cow position:chr2:38646945-38647229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):36, 176

               
               
               Conread position:73-356
               
               
               Cow position:chr2:57733631-57733348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:73-360
               
               
               Cow position:chr2:994168-994450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:73-436
               
               
               Cow position:chr2:46119564-46119922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:73-457
               
               
               Cow position:chr2:827416-827793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 70

               
               
               Conread position:73-514
               
               
               Cow position:chr2:41087901-41088363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:73-528
               
               
               Cow position:chr2:46227669-46227218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:73-530
               
               
               Cow position:chr2:992356-991921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:73-533
               
               
               Cow position:chr2:43624336-43624781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:73-534
               
               
               Cow position:chr2:75600914-75600457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-535
               
               
               Cow position:chr2:13684894-13684450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:73-535
               
               
               Cow position:chr2:36055578-36056053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 312

               
               
               Conread position:73-535
               
               
               Cow position:chr2:42255632-42255175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 10

               
               
               Conread position:73-535
               
               
               Cow position:chr2:44168270-44167826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 75

               
               
               Conread position:74-275
               
               
               Cow position:chr2:13695035-13695240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:74-530
               
               
               Cow position:chr2:19494417-19493962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:74-535
               
               
               Cow position:chr2:12949961-12950421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 95

               
               
               Conread position:75-234
               
               
               Cow position:chr2:64562735-64562897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:75-382
               
               
               Cow position:chr2:55496092-55496393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 156

               
               
               Conread position:75-393
               
               
               Cow position:chr2:51097882-51098205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:75-397
               
               
               Cow position:chr2:16481656-16481982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:75-486
               
               
               Cow position:chr2:73636968-73637383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:284
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:75-495
               
               
               Cow position:chr2:41145520-41145095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:75-524
               
               
               Cow position:chr2:46331268-46330811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 47

               
               
               Conread position:76-253
               
               
               Cow position:chr2:54931640-54931816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:76-382
               
               
               Cow position:chr2:67927591-67927902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 123

               
               
               Conread position:76-443
               
               
               Cow position:chr2:65587357-65586997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:78-393
               
               
               Cow position:chr2:33988108-33988431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 225

               
               
               Conread position:79-303
               
               
               Cow position:chr2:24722079-24722298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):136, 27

               
               
               Conread position:79-431
               
               
               Cow position:chr2:45542205-45542551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:79-535
               
               
               Cow position:chr2:24007614-24007180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:79-535
               
               
               Cow position:chr2:42801233-42800791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:81-249
               
               
               Cow position:chr2:81294025-81293854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:81-268
               
               
               Cow position:chr2:4207373-4207560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:81-333
               
               
               Cow position:chr2:15872125-15871881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 64

               
               
               Conread position:81-440
               
               
               Cow position:chr2:85794773-85795120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 125

               
               
               Conread position:81-445
               
               
               Cow position:chr2:46351587-46351935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:81-450
               
               
               Cow position:chr2:78249935-78249562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:81-501
               
               
               Cow position:chr2:15063075-15063488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:81-515
               
               
               Cow position:chr2:17114546-17114971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 71

               
               
               Conread position:81-535
               
               
               Cow position:chr2:38658601-38659038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:311
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:82-493
               
               
               Cow position:chr2:1422547-1422156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 159

               
               
               Conread position:82-504
               
               
               Cow position:chr2:6160155-6160551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:85-365
               
               
               Cow position:chr2:38640510-38640230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):24, 61

               
               
               Conread position:85-535
               
               
               Cow position:chr2:44170749-44170300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 70

               
               
               Conread position:85-535
               
               
               Cow position:chr2:46202459-46202012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 104

               
               
               Conread position:88-329
               
               
               Cow position:chr2:17492330-17492566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:88-535
               
               
               Cow position:chr2:16071214-16071652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:88-535
               
               
               Cow position:chr2:45619208-45619651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:89-318
               
               
               Cow position:chr2:39750304-39750074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:89-327
               
               
               Cow position:chr2:35988430-35988667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 110

               
               
               Conread position:89-427
               
               
               Cow position:chr2:59819624-59819955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:89-454
               
               
               Cow position:chr2:32350741-32351097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:90-340
               
               
               Cow position:chr2:10440015-10439773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):127, 62

               
               
               Conread position:90-533
               
               
               Cow position:chr2:77157160-77157608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:91-266
               
               
               Cow position:chr2:56338850-56339021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):125, 50

               
               
               Conread position:91-347
               
               
               Cow position:chr2:63074678-63074930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 52

               
               
               Conread position:91-535
               
               
               Cow position:chr2:35948495-35948922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:91-535
               
               
               Cow position:chr2:46204705-46204253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:99-520
               
               
               Cow position:chr2:10319775-10320195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:104-348
               
               
               Cow position:chr2:39513642-39513395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):113, 19

               
               
               Conread position:104-389
               
               
               Cow position:chr2:47443442-47443151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 206

               
               
               Conread position:104-514
               
               
               Cow position:chr2:50566107-50565692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 88

               
               
               Conread position:104-532
               
               
               Cow position:chr2:71922393-71921974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:294
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:104-535
               
               
               Cow position:chr2:36575905-36575477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 59

               
               
               Conread position:104-535
               
               
               Cow position:chr2:68877298-68876882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:289
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):78, 87

               
               
               Conread position:109-327
               
               
               Cow position:chr2:73129316-73129097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 183

               
               
               Conread position:109-387
               
               
               Cow position:chr2:62200924-62200643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):73, 83

               
               
               Conread position:109-535
               
               
               Cow position:chr2:39501201-39500776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:112-461
               
               
               Cow position:chr2:43790262-43789919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 31

               
               
               Conread position:112-515
               
               
               Cow position:chr2:45535627-45535235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 40

               
               
               Conread position:119-367
               
               
               Cow position:chr2:84498102-84497845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 74

               
               
               Conread position:135-534
               
               
               Cow position:chr2:38747801-38747421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 47

               
               
               Conread position:140-535
               
               
               Cow position:chr2:44191618-44191228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:140-535
               
               
               Cow position:chr2:68487867-68488265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 142

               
               
               Conread position:141-418
               
               
               Cow position:chr2:20362519-20362787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:142-396
               
               
               Cow position:chr2:44222957-44222701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 26

               
               
               Conread position:143-327
               
               
               Cow position:chr2:45721133-45721318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:143-461
               
               
               Cow position:chr2:5130317-5130635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 172

               
               
               Conread position:143-535
               
               
               Cow position:chr2:22254041-22254418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 159

               
               
               Conread position:144-344
               
               
               Cow position:chr2:17257979-17257777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:144-363
               
               
               Cow position:chr2:30911454-30911233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:151-438
               
               
               Cow position:chr2:46247333-46247622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 146

               
               
               Conread position:153-535
               
               
               Cow position:chr2:39584574-39584196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 143

               
               
               Conread position:153-535
               
               
               Cow position:chr2:43608995-43609348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:154-334
               
               
               Cow position:chr2:44217785-44217966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:158-508
               
               
               Cow position:chr2:46374823-46375158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:162-404
               
               
               Cow position:chr2:62861703-62861460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):54, 143

               
               
               Conread position:166-445
               
               
               Cow position:chr2:30144830-30144556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:167-408
               
               
               Cow position:chr2:54810745-54810987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 59

               
               
               Conread position:167-432
               
               
               Cow position:chr2:80865746-80866010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:167-437
               
               
               Cow position:chr2:44081546-44081274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):134, 225

               
               
               Conread position:167-511
               
               
               Cow position:chr2:25597386-25597721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:167-535
               
               
               Cow position:chr2:39815174-39815542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 36

               
               
               Conread position:167-535
               
               
               Cow position:chr2:58536894-58537238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):138, 31

               
               
               Conread position:168-363
               
               
               Cow position:chr2:47893808-47894006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):48, 164

               
               
               Conread position:168-462
               
               
               Cow position:chr2:19328656-19328358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 264

               
               
               Conread position:168-529
               
               
               Cow position:chr2:42925399-42925054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:168-533
               
               
               Cow position:chr2:21629-21993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:168-535
               
               
               Cow position:chr2:24434171-24434541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 116

               
               
               Conread position:168-535
               
               
               Cow position:chr2:53532703-53533063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 184

               
               
               Conread position:169-340
               
               
               Cow position:chr2:16492749-16492582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:169-392
               
               
               Cow position:chr2:46190870-46191091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):48, 146

               
               
               Conread position:169-422
               
               
               Cow position:chr2:56056856-56056600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 134

               
               
               Conread position:169-461
               
               
               Cow position:chr2:549222-549512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:169-470
               
               
               Cow position:chr2:63331694-63332003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):43, 131

               
               
               Conread position:169-496
               
               
               Cow position:chr2:47624299-47624614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:169-513
               
               
               Cow position:chr2:72183384-72183723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 184

               
               
               Conread position:169-514
               
               
               Cow position:chr2:85281020-85281346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:169-517
               
               
               Cow position:chr2:69747508-69747857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 263

               
               
               Conread position:169-527
               
               
               Cow position:chr2:17966921-17967282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:169-527
               
               
               Cow position:chr2:53851544-53851185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 64

               
               
               Conread position:169-529
               
               
               Cow position:chr2:48361680-48361319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:169-533
               
               
               Cow position:chr2:40402919-40403275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 176

               
               
               Conread position:169-534
               
               
               Cow position:chr2:47645154-47644798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:169-534
               
               
               Cow position:chr2:70704366-70703999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 283

               
               
               Conread position:169-535
               
               
               Cow position:chr2:14089901-14089524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:169-535
               
               
               Cow position:chr2:15694313-15693974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 57

               
               
               Conread position:169-535
               
               
               Cow position:chr2:42927343-42927707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 128

               
               
               Conread position:169-535
               
               
               Cow position:chr2:52409189-52409526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):47, 172

               
               
               Conread position:170-361
               
               
               Cow position:chr2:27180199-27179998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr2:78197975-78197764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 125

               
               
               Conread position:170-461
               
               
               Cow position:chr2:83184261-83183956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 286

               
               
               Conread position:170-535
               
               
               Cow position:chr2:40880175-40879833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):47, 68

               
               
               Conread position:170-535
               
               
               Cow position:chr2:59952752-59953112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 128

               
               
               Conread position:171-400
               
               
               Cow position:chr2:15391884-15391662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):45, 122

               
               
               Conread position:171-535
               
               
               Cow position:chr2:26102873-26102524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:171-535
               
               
               Cow position:chr2:70579598-70579969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):129, 283

               
               
               Conread position:172-296
               
               
               Cow position:chr2:6329126-6329251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:172-445
               
               
               Cow position:chr2:25448433-25448161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 132

               
               
               Conread position:172-521
               
               
               Cow position:chr2:39564458-39564111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 120

               
               
               Conread position:172-535
               
               
               Cow position:chr2:45912527-45912894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 272

               
               
               Conread position:177-381
               
               
               Cow position:chr2:39798342-39798133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:184-535
               
               
               Cow position:chr2:52344844-52344506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 102

               
               
               Conread position:185-446
               
               
               Cow position:chr2:8354856-8355113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:187-450
               
               
               Cow position:chr2:7769587-7769333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:190-528
               
               
               Cow position:chr2:9173185-9173510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:190-534
               
               
               Cow position:chr2:18061541-18061885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 189

               
               
               Conread position:190-535
               
               
               Cow position:chr2:52171343-52170995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:195-530
               
               
               Cow position:chr2:43596071-43596421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 175

               
               
               Conread position:196-442
               
               
               Cow position:chr2:2740541-2740298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):110, 13

               
               
               Conread position:196-521
               
               
               Cow position:chr2:46293965-46294279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:201-535
               
               
               Cow position:chr2:70539296-70539632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:203-387
               
               
               Cow position:chr2:50614213-50614393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):98, 31

               
               
               Conread position:203-535
               
               
               Cow position:chr2:75561912-75561581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 145

               
               
               Conread position:206-493
               
               
               Cow position:chr2:42936138-42936426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):9, 177

               
               
               Conread position:206-533
               
               
               Cow position:chr2:45666104-45665779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 262

               
               
               Conread position:210-393
               
               
               Cow position:chr2:25966824-25967011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):8, 88

               
               
               Conread position:210-402
               
               
               Cow position:chr2:17409940-17410132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:213-535
               
               
               Cow position:chr2:36878155-36878474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 136

               
               
               Conread position:214-413
               
               
               Cow position:chr2:47147971-47147771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:214-445
               
               
               Cow position:chr2:1035847-1036068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 56

               
               
               Conread position:215-514
               
               
               Cow position:chr2:34535096-34535392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):133, 92

               
               
               Conread position:216-533
               
               
               Cow position:chr2:34695305-34694984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 81

               
               
               Conread position:218-334
               
               
               Cow position:chr2:73197276-73197392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:219-529
               
               
               Cow position:chr2:61974854-61974544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 18

               
               
               Conread position:219-535
               
               
               Cow position:chr2:11806376-11806063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 73

               
               
               Conread position:220-528
               
               
               Cow position:chr2:11617151-11616850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):126, 68

               
               
               Conread position:223-535
               
               
               Cow position:chr2:1756094-1755781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):77, 243

               
               
               Conread position:223-535
               
               
               Cow position:chr2:45880723-45881023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):85, 74

               
               
               Conread position:245-534
               
               
               Cow position:chr2:15568150-15568440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 188

               
               
               Conread position:252-534
               
               
               Cow position:chr2:39052008-39051734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 132

               
               
               Conread position:254-512
               
               
               Cow position:chr2:68716646-68716901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 212

               
               
               Conread position:259-455
               
               
               Cow position:chr2:21078599-21078400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):48, 192

               
               
               Conread position:259-495
               
               
               Cow position:chr2:47119656-47119410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):43, 178

               
               
               Conread position:32-300
               
               
               Cow position:chr20:3564439-3564179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):18, 5

               
               
               Conread position:32-392
               
               
               Cow position:chr20:33819517-33819145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:42-235
               
               
               Cow position:chr20:8246002-8245802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):7, 127

               
               
               Conread position:43-398
               
               
               Cow position:chr20:5078911-5078543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:45-535
               
               
               Cow position:chr20:6054234-6054726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:48-535
               
               
               Cow position:chr20:17251988-17251497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:49-457
               
               
               Cow position:chr20:14433153-14433568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 30

               
               
               Conread position:50-311
               
               
               Cow position:chr20:8912223-8912491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):53, 12

               
               
               Conread position:50-334
               
               
               Cow position:chr20:36239518-36239226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:50-351
               
               
               Cow position:chr20:16097116-16096809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 130

               
               
               Conread position:52-382
               
               
               Cow position:chr20:38090180-38089847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:52-495
               
               
               Cow position:chr20:3141843-3141410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 118

               
               
               Conread position:53-503
               
               
               Cow position:chr20:14980244-14980696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:53-535
               
               
               Cow position:chr20:13829524-13829053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:327
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:54-419
               
               
               Cow position:chr20:15118544-15118174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 137

               
               
               Conread position:55-298
               
               
               Cow position:chr20:14898002-14897757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:55-331
               
               
               Cow position:chr20:25953531-25953255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):57, 139

               
               
               Conread position:55-356
               
               
               Cow position:chr20:4998843-4999165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 123

               
               
               Conread position:55-375
               
               
               Cow position:chr20:38515049-38514724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:55-376
               
               
               Cow position:chr20:16818680-16818357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):162, 26

               
               
               Conread position:55-413
               
               
               Cow position:chr20:22937051-22937408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):23, 89

               
               
               Conread position:55-417
               
               
               Cow position:chr20:11611944-11611581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:55-533
               
               
               Cow position:chr20:32513269-32512771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:322
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):56, 118

               
               
               Conread position:55-535
               
               
               Cow position:chr20:14807147-14806672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:55-535
               
               
               Cow position:chr20:22235563-22235100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 96

               
               
               Conread position:55-535
               
               
               Cow position:chr20:36779455-36779944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 253

               
               
               Conread position:56-401
               
               
               Cow position:chr20:11135489-11135839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:56-434
               
               
               Cow position:chr20:8547322-8546949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 32

               
               
               Conread position:56-461
               
               
               Cow position:chr20:13652116-13652501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):159, 48

               
               
               Conread position:56-535
               
               
               Cow position:chr20:7756373-7756843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:57-229
               
               
               Cow position:chr20:34881142-34881308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):5, 25

               
               
               Conread position:57-319
               
               
               Cow position:chr20:20158393-20158132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:57-364
               
               
               Cow position:chr20:23549021-23548699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:57-392
               
               
               Cow position:chr20:11548463-11548797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:57-530
               
               
               Cow position:chr20:34251402-34251887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 143

               
               
               Conread position:57-531
               
               
               Cow position:chr20:747195-746746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:58-337
               
               
               Cow position:chr20:42166528-42166800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):63, 94

               
               
               Conread position:58-533
               
               
               Cow position:chr20:39417644-39418106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:60-277
               
               
               Cow position:chr20:26040836-26041057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 88

               
               
               Conread position:60-288
               
               
               Cow position:chr20:37919119-37919340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):123, 5

               
               
               Conread position:61-392
               
               
               Cow position:chr20:4891860-4892167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 110

               
               
               Conread position:62-272
               
               
               Cow position:chr20:20590047-20590255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):24, 32

               
               
               Conread position:62-299
               
               
               Cow position:chr20:35444848-35445084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):17, 82

               
               
               Conread position:62-310
               
               
               Cow position:chr20:15530117-15529870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):153, 169

               
               
               Conread position:62-417
               
               
               Cow position:chr20:18379634-18379282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:62-516
               
               
               Cow position:chr20:23846408-23846867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:62-520
               
               
               Cow position:chr20:7658967-7659412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:62-535
               
               
               Cow position:chr20:12995733-12996223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 348

               
               
               Conread position:62-535
               
               
               Cow position:chr20:28982957-28982484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 83

               
               
               Conread position:62-535
               
               
               Cow position:chr20:31739958-31740429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 139

               
               
               Conread position:62-535
               
               
               Cow position:chr20:35146273-35145793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:62-535
               
               
               Cow position:chr20:35888499-35888980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):7, 101

               
               
               Conread position:62-535
               
               
               Cow position:chr20:39743561-39743100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:63-533
               
               
               Cow position:chr20:2819800-2819348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:63-533
               
               
               Cow position:chr20:13269870-13269413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:64-253
               
               
               Cow position:chr20:27323525-27323331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 134

               
               
               Conread position:64-319
               
               
               Cow position:chr20:5365183-5364929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 36

               
               
               Conread position:64-392
               
               
               Cow position:chr20:28818681-28819005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):45, 74

               
               
               Conread position:65-312
               
               
               Cow position:chr20:38925595-38925845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:65-474
               
               
               Cow position:chr20:34221736-34221321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):46, 247

               
               
               Conread position:65-525
               
               
               Cow position:chr20:39325648-39325181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 112

               
               
               Conread position:65-533
               
               
               Cow position:chr20:8702678-8703118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:65-535
               
               
               Cow position:chr20:5702976-5702531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 91

               
               
               Conread position:65-535
               
               
               Cow position:chr20:26996790-26996320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 140

               
               
               Conread position:66-334
               
               
               Cow position:chr20:33623306-33623561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:66-505
               
               
               Cow position:chr20:41028739-41028300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:66-535
               
               
               Cow position:chr20:398059-398508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:67-282
               
               
               Cow position:chr20:21325577-21325362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:67-453
               
               
               Cow position:chr20:32523713-32523329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-535
               
               
               Cow position:chr20:3599150-3599604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:68-535
               
               
               Cow position:chr20:5950390-5950846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:68-535
               
               
               Cow position:chr20:7425947-7426403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:69-445
               
               
               Cow position:chr20:3255283-3254925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:71-292
               
               
               Cow position:chr20:36312269-36312482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):146, 20

               
               
               Conread position:71-327
               
               
               Cow position:chr20:14620061-14620315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:71-387
               
               
               Cow position:chr20:6248350-6248665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):5, 102

               
               
               Conread position:71-408
               
               
               Cow position:chr20:7624011-7624335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:71-515
               
               
               Cow position:chr20:20967567-20967147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:71-535
               
               
               Cow position:chr20:15548644-15549111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 130

               
               
               Conread position:72-495
               
               
               Cow position:chr20:16935076-16935476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 23

               
               
               Conread position:72-533
               
               
               Cow position:chr20:12420372-12420833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:72-535
               
               
               Cow position:chr20:8429988-8429531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:311
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:73-278
               
               
               Cow position:chr20:13805562-13805357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:73-293
               
               
               Cow position:chr20:15766362-15766135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:73-396
               
               
               Cow position:chr20:38868867-38868565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:73-449
               
               
               Cow position:chr20:37621819-37621443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 164

               
               
               Conread position:73-514
               
               
               Cow position:chr20:11043214-11043688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:310
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):36, 183

               
               
               Conread position:73-514
               
               
               Cow position:chr20:27407649-27408067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:73-529
               
               
               Cow position:chr20:9266854-9267330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:330
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:73-534
               
               
               Cow position:chr20:40177490-40177039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 87

               
               
               Conread position:73-535
               
               
               Cow position:chr20:6240274-6240743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:73-535
               
               
               Cow position:chr20:12581710-12582161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:73-535
               
               
               Cow position:chr20:28605452-28604992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-535
               
               
               Cow position:chr20:39398727-39398275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 15

               
               
               Conread position:75-305
               
               
               Cow position:chr20:24097239-24097014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):39, 60

               
               
               Conread position:75-535
               
               
               Cow position:chr20:32847586-32847138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:76-343
               
               
               Cow position:chr20:12126058-12126328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 225

               
               
               Conread position:76-396
               
               
               Cow position:chr20:7737991-7738305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:76-396
               
               
               Cow position:chr20:32709197-32709528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:76-525
               
               
               Cow position:chr20:22065304-22064866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:79-311
               
               
               Cow position:chr20:3148921-3148693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 46

               
               
               Conread position:79-535
               
               
               Cow position:chr20:5998421-5998880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:81-283
               
               
               Cow position:chr20:19635940-19636141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:81-288
               
               
               Cow position:chr20:5703710-5703501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:81-383
               
               
               Cow position:chr20:11751892-11751582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 83

               
               
               Conread position:81-457
               
               
               Cow position:chr20:7438619-7438991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 62

               
               
               Conread position:81-535
               
               
               Cow position:chr20:25009395-25009857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:81-535
               
               
               Cow position:chr20:28441557-28441118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 75

               
               
               Conread position:82-248
               
               
               Cow position:chr20:26387693-26387531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:82-535
               
               
               Cow position:chr20:14880023-14879572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:85-290
               
               
               Cow position:chr20:39268848-39269057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:85-525
               
               
               Cow position:chr20:24070036-24069608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 58

               
               
               Conread position:88-276
               
               
               Cow position:chr20:19834600-19834788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):82, 23

               
               
               Conread position:89-444
               
               
               Cow position:chr20:32674675-32674337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):128, 42

               
               
               Conread position:89-451
               
               
               Cow position:chr20:10188505-10188141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:89-534
               
               
               Cow position:chr20:1139535-1139986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:90-449
               
               
               Cow position:chr20:25161902-25162261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 36

               
               
               Conread position:92-399
               
               
               Cow position:chr20:33067132-33067445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:104-535
               
               
               Cow position:chr20:31927248-31927672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:294
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):78, 57

               
               
               Conread position:112-535
               
               
               Cow position:chr20:20203418-20203002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 30

               
               
               Conread position:114-279
               
               
               Cow position:chr20:630726-630564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:114-436
               
               
               Cow position:chr20:32463323-32463640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 29

               
               
               Conread position:121-376
               
               
               Cow position:chr20:17100553-17100302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:141-450
               
               
               Cow position:chr20:22978507-22978190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 165

               
               
               Conread position:143-528
               
               
               Cow position:chr20:23870641-23871022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 125

               
               
               Conread position:147-535
               
               
               Cow position:chr20:9412663-9412282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 59

               
               
               Conread position:151-535
               
               
               Cow position:chr20:19459499-19459858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:157-329
               
               
               Cow position:chr20:11392941-11392772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 116

               
               
               Conread position:157-525
               
               
               Cow position:chr20:42458696-42459055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:158-472
               
               
               Cow position:chr20:36010956-36010639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:159-402
               
               
               Cow position:chr20:32866034-32866272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):134, 58

               
               
               Conread position:159-533
               
               
               Cow position:chr20:38768303-38768665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 77

               
               
               Conread position:166-535
               
               
               Cow position:chr20:33363670-33363306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:167-316
               
               
               Cow position:chr20:8817339-8817488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:167-394
               
               
               Cow position:chr20:21204506-21204283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):7, 51

               
               
               Conread position:167-402
               
               
               Cow position:chr20:8619998-8620235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:167-429
               
               
               Cow position:chr20:39266806-39267071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 85

               
               
               Conread position:167-530
               
               
               Cow position:chr20:15593438-15593087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:168-402
               
               
               Cow position:chr20:41883881-41883651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):163, 85

               
               
               Conread position:168-514
               
               
               Cow position:chr20:11542136-11542475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 104

               
               
               Conread position:168-535
               
               
               Cow position:chr20:17670334-17669968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:168-535
               
               
               Cow position:chr20:19363212-19363576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:169-371
               
               
               Cow position:chr20:10772355-10772150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:169-510
               
               
               Cow position:chr20:36207964-36207614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 232

               
               
               Conread position:169-532
               
               
               Cow position:chr20:580770-581131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 219

               
               
               Conread position:170-534
               
               
               Cow position:chr20:23792753-23792391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:171-534
               
               
               Cow position:chr20:21929053-21928685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 127

               
               
               Conread position:171-534
               
               
               Cow position:chr20:34777328-34776973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 127

               
               
               Conread position:171-535
               
               
               Cow position:chr20:19751455-19751095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 131

               
               
               Conread position:172-534
               
               
               Cow position:chr20:40782108-40781760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:177-535
               
               
               Cow position:chr20:34596955-34597322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):40, 55

               
               
               Conread position:178-490
               
               
               Cow position:chr20:7211175-7210867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 28

               
               
               Conread position:181-453
               
               
               Cow position:chr20:28955563-28955835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:184-328
               
               
               Cow position:chr20:1009571-1009715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:190-382
               
               
               Cow position:chr20:23506341-23506534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:190-400
               
               
               Cow position:chr20:16492202-16491990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 125

               
               
               Conread position:196-535
               
               
               Cow position:chr20:5576898-5576554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):99, 91

               
               
               Conread position:196-535
               
               
               Cow position:chr20:6903437-6903115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 99

               
               
               Conread position:197-344
               
               
               Cow position:chr20:26723556-26723699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:198-527
               
               
               Cow position:chr20:3606840-3607157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:198-535
               
               
               Cow position:chr20:11482013-11482353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:210-376
               
               
               Cow position:chr20:39962684-39962517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 88

               
               
               Conread position:210-445
               
               
               Cow position:chr20:39415859-39415616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:210-534
               
               
               Cow position:chr20:35009628-35009953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):8, 213

               
               
               Conread position:211-534
               
               
               Cow position:chr20:11176140-11176460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):144, 92

               
               
               Conread position:212-412
               
               
               Cow position:chr20:23103329-23103125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:212-535
               
               
               Cow position:chr20:39019802-39019482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 188

               
               
               Conread position:214-535
               
               
               Cow position:chr20:9048804-9049120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 69

               
               
               Conread position:215-530
               
               
               Cow position:chr20:23505931-23505620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 188

               
               
               Conread position:223-359
               
               
               Cow position:chr20:35354727-35354861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:223-534
               
               
               Cow position:chr20:10884262-10884579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):125, 106

               
               
               Conread position:18-235
               
               
               Cow position:chr21:44732726-44732940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 27

               
               
               Conread position:27-363
               
               
               Cow position:chr21:12354393-12354718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):82, 23

               
               
               Conread position:45-282
               
               
               Cow position:chr21:13090671-13090431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:47-287
               
               
               Cow position:chr21:40820556-40820801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 128

               
               
               Conread position:47-364
               
               
               Cow position:chr21:43388653-43388325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:47-535
               
               
               Cow position:chr21:34023-33528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:47-535
               
               
               Cow position:chr21:13584762-13585251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:346
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):63, 18

               
               
               Conread position:48-348
               
               
               Cow position:chr21:44724082-44724373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:50-400
               
               
               Cow position:chr21:15543947-15544280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:51-246
               
               
               Cow position:chr21:3135581-3135776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:51-325
               
               
               Cow position:chr21:17403559-17403833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 30

               
               
               Conread position:51-514
               
               
               Cow position:chr21:17559623-17560110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 152

               
               
               Conread position:51-535
               
               
               Cow position:chr21:20160965-20160491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:52-400
               
               
               Cow position:chr21:8426730-8426379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 30

               
               
               Conread position:52-534
               
               
               Cow position:chr21:18289963-18289469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 28

               
               
               Conread position:52-534
               
               
               Cow position:chr21:23673031-23672552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:52-535
               
               
               Cow position:chr21:27568870-27569351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 205

               
               
               Conread position:53-401
               
               
               Cow position:chr21:19703017-19702661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):56, 84

               
               
               Conread position:53-482
               
               
               Cow position:chr21:48233892-48234298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:53-533
               
               
               Cow position:chr21:27863232-27863710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:53-535
               
               
               Cow position:chr21:42501337-42500840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:54-285
               
               
               Cow position:chr21:15012717-15012493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):161, 95

               
               
               Conread position:54-453
               
               
               Cow position:chr21:19407288-19407700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:54-535
               
               
               Cow position:chr21:3498778-3498305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:321
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):52, 27

               
               
               Conread position:55-235
               
               
               Cow position:chr21:45376231-45376052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:55-299
               
               
               Cow position:chr21:26018666-26018419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 122

               
               
               Conread position:55-387
               
               
               Cow position:chr21:9505156-9504836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 141

               
               
               Conread position:55-412
               
               
               Cow position:chr21:47719019-47719373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:55-431
               
               
               Cow position:chr21:45906336-45906714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 108

               
               
               Conread position:55-508
               
               
               Cow position:chr21:15584136-15584575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:311
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:55-530
               
               
               Cow position:chr21:13047906-13048385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:56-253
               
               
               Cow position:chr21:18450040-18449839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 145

               
               
               Conread position:56-348
               
               
               Cow position:chr21:7768710-7768426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):159, 53

               
               
               Conread position:56-364
               
               
               Cow position:chr21:38720533-38720226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 73

               
               
               Conread position:56-375
               
               
               Cow position:chr21:10656820-10657139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:56-381
               
               
               Cow position:chr21:742561-742245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 100

               
               
               Conread position:56-396
               
               
               Cow position:chr21:13656350-13656687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):53, 129

               
               
               Conread position:56-530
               
               
               Cow position:chr21:22861284-22860814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 101

               
               
               Conread position:56-535
               
               
               Cow position:chr21:3763470-3763930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:332
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):132, 24

               
               
               Conread position:56-535
               
               
               Cow position:chr21:10070642-10071122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:321
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:56-535
               
               
               Cow position:chr21:38918483-38918022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:327
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:57-314
               
               
               Cow position:chr21:48334503-48334764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:57-319
               
               
               Cow position:chr21:39319124-39319388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):22, 8

               
               
               Conread position:57-370
               
               
               Cow position:chr21:36695810-36696122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:57-405
               
               
               Cow position:chr21:12339901-12339572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:57-490
               
               
               Cow position:chr21:44963078-44962647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:57-535
               
               
               Cow position:chr21:11739833-11740325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 78

               
               
               Conread position:58-302
               
               
               Cow position:chr21:13580697-13580449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 6

               
               
               Conread position:58-530
               
               
               Cow position:chr21:41156154-41155674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 122

               
               
               Conread position:59-279
               
               
               Cow position:chr21:30658143-30657930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):6, 81

               
               
               Conread position:59-515
               
               
               Cow position:chr21:23535993-23535544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:60-250
               
               
               Cow position:chr21:1464624-1464432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:60-296
               
               
               Cow position:chr21:13674370-13674609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 134

               
               
               Conread position:60-444
               
               
               Cow position:chr21:16915060-16914669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:61-440
               
               
               Cow position:chr21:10817314-10816920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:61-445
               
               
               Cow position:chr21:23979898-23980289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 136

               
               
               Conread position:62-215
               
               
               Cow position:chr21:37479312-37479468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 108

               
               
               Conread position:62-256
               
               
               Cow position:chr21:16797130-16796934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 105

               
               
               Conread position:62-303
               
               
               Cow position:chr21:39394028-39393784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:62-329
               
               
               Cow position:chr21:36682604-36682332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):108, 49

               
               
               Conread position:62-365
               
               
               Cow position:chr21:14027341-14027027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:62-417
               
               
               Cow position:chr21:47713731-47714086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-435
               
               
               Cow position:chr21:33580690-33580315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:62-462
               
               
               Cow position:chr21:30222618-30222217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:62-491
               
               
               Cow position:chr21:11027079-11027506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:62-502
               
               
               Cow position:chr21:41590288-41590716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:62-533
               
               
               Cow position:chr21:6834329-6833861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:62-533
               
               
               Cow position:chr21:33982536-33983001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 91

               
               
               Conread position:62-535
               
               
               Cow position:chr21:82336-81877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr21:9416519-9416049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 44

               
               
               Conread position:62-535
               
               
               Cow position:chr21:13034759-13035242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr21:38901041-38900580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 91

               
               
               Conread position:62-535
               
               
               Cow position:chr21:44565451-44565895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:322
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:63-340
               
               
               Cow position:chr21:46599635-46599359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 108

               
               
               Conread position:64-286
               
               
               Cow position:chr21:11182824-11182606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:64-388
               
               
               Cow position:chr21:41522136-41522457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:64-407
               
               
               Cow position:chr21:44214387-44214055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 75

               
               
               Conread position:64-411
               
               
               Cow position:chr21:16570169-16569828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:64-529
               
               
               Cow position:chr21:37706137-37706594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:65-337
               
               
               Cow position:chr21:19868687-19868954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:65-348
               
               
               Cow position:chr21:30980284-30980586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):46, 191

               
               
               Conread position:65-361
               
               
               Cow position:chr21:71861-71563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:65-450
               
               
               Cow position:chr21:27810665-27810296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:65-514
               
               
               Cow position:chr21:47861456-47861023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:65-524
               
               
               Cow position:chr21:44825600-44826061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:65-530
               
               
               Cow position:chr21:14452508-14452042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 47

               
               
               Conread position:65-535
               
               
               Cow position:chr21:9311330-9310850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:318
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):47, 130

               
               
               Conread position:65-535
               
               
               Cow position:chr21:12154400-12153940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:65-535
               
               
               Cow position:chr21:20262074-20262527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 16

               
               
               Conread position:65-535
               
               
               Cow position:chr21:27229531-27229988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:65-535
               
               
               Cow position:chr21:34654345-34653891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:66-286
               
               
               Cow position:chr21:25012348-25012135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:66-402
               
               
               Cow position:chr21:41140441-41140782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 111

               
               
               Conread position:66-454
               
               
               Cow position:chr21:17638167-17637786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:66-461
               
               
               Cow position:chr21:12461695-12462094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:66-525
               
               
               Cow position:chr21:30592040-30592485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 75

               
               
               Conread position:66-535
               
               
               Cow position:chr21:15545088-15545556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 120

               
               
               Conread position:67-306
               
               
               Cow position:chr21:20163979-20163742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:67-357
               
               
               Cow position:chr21:46132865-46132559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 246

               
               
               Conread position:67-525
               
               
               Cow position:chr21:40786951-40786487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:67-534
               
               
               Cow position:chr21:40899612-40899144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:68-268
               
               
               Cow position:chr21:13883747-13883552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):140, 13

               
               
               Conread position:68-319
               
               
               Cow position:chr21:6851437-6851192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:68-522
               
               
               Cow position:chr21:17184190-17183741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:69-514
               
               
               Cow position:chr21:29213887-29214320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:69-520
               
               
               Cow position:chr21:643590-643155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 19

               
               
               Conread position:69-535
               
               
               Cow position:chr21:641854-641392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 13

               
               
               Conread position:70-235
               
               
               Cow position:chr21:16119891-16120057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:70-354
               
               
               Cow position:chr21:13589030-13588751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:71-337
               
               
               Cow position:chr21:12104622-12104367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:71-533
               
               
               Cow position:chr21:32559101-32559545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 75

               
               
               Conread position:72-291
               
               
               Cow position:chr21:30243418-30243633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:73-244
               
               
               Cow position:chr21:39845869-39845688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:73-281
               
               
               Cow position:chr21:8506277-8506488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:73-281
               
               
               Cow position:chr21:8509165-8509376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:73-395
               
               
               Cow position:chr21:868651-868982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 264

               
               
               Conread position:73-403
               
               
               Cow position:chr21:11779271-11779595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 190

               
               
               Conread position:73-430
               
               
               Cow position:chr21:6998208-6997846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:73-499
               
               
               Cow position:chr21:20260030-20260477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 414

               
               
               Conread position:73-530
               
               
               Cow position:chr21:47464852-47465309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:73-533
               
               
               Cow position:chr21:5427194-5426755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:73-533
               
               
               Cow position:chr21:36763329-36762862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:73-535
               
               
               Cow position:chr21:32339478-32339928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:73-535
               
               
               Cow position:chr21:39888459-39888937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 263

               
               
               Conread position:74-318
               
               
               Cow position:chr21:21616042-21615805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):143, 69

               
               
               Conread position:74-535
               
               
               Cow position:chr21:37480230-37479763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:75-465
               
               
               Cow position:chr21:30835631-30835237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 125

               
               
               Conread position:75-501
               
               
               Cow position:chr21:13840593-13840164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:75-535
               
               
               Cow position:chr21:44251576-44252019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:313
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:76-535
               
               
               Cow position:chr21:3585100-3585549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:78-535
               
               
               Cow position:chr21:2679809-2679359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 92

               
               
               Conread position:78-535
               
               
               Cow position:chr21:8351031-8351497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 67

               
               
               Conread position:79-427
               
               
               Cow position:chr21:22209982-22210333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):25, 78

               
               
               Conread position:79-524
               
               
               Cow position:chr21:30231435-30231885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 115

               
               
               Conread position:81-312
               
               
               Cow position:chr21:22851174-22850949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:81-312
               
               
               Cow position:chr21:24875611-24875380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:81-316
               
               
               Cow position:chr21:17252718-17252952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:81-375
               
               
               Cow position:chr21:674927-674655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:81-456
               
               
               Cow position:chr21:17874931-17875310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:81-523
               
               
               Cow position:chr21:802064-802475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:81-535
               
               
               Cow position:chr21:42135360-42135817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:82-533
               
               
               Cow position:chr21:24858574-24858120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 66

               
               
               Conread position:84-486
               
               
               Cow position:chr21:42007212-42007603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:85-382
               
               
               Cow position:chr21:13842748-13842444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:85-535
               
               
               Cow position:chr21:11644711-11645162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 61

               
               
               Conread position:88-530
               
               
               Cow position:chr21:29069071-29069517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 375

               
               
               Conread position:88-535
               
               
               Cow position:chr21:7673365-7672940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 58

               
               
               Conread position:88-535
               
               
               Cow position:chr21:18318965-18318533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:89-337
               
               
               Cow position:chr21:41287545-41287792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:89-343
               
               
               Cow position:chr21:19240627-19240880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:91-453
               
               
               Cow position:chr21:10561336-10561695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 55

               
               
               Conread position:96-535
               
               
               Cow position:chr21:19767108-19766661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:103-437
               
               
               Cow position:chr21:21633068-21633401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):189, 86

               
               
               Conread position:104-355
               
               
               Cow position:chr21:828977-829227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):108, 37

               
               
               Conread position:104-454
               
               
               Cow position:chr21:7785453-7785113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 86

               
               
               Conread position:121-514
               
               
               Cow position:chr21:27145772-27146163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 87

               
               
               Conread position:121-527
               
               
               Cow position:chr21:9990727-9990329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 47

               
               
               Conread position:131-535
               
               
               Cow position:chr21:36297702-36297286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 37

               
               
               Conread position:133-375
               
               
               Cow position:chr21:29014351-29014597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:140-411
               
               
               Cow position:chr21:19674006-19673731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:141-508
               
               
               Cow position:chr21:27624898-27624547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 153

               
               
               Conread position:141-525
               
               
               Cow position:chr21:7581704-7582092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 162

               
               
               Conread position:141-527
               
               
               Cow position:chr21:5392336-5392727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 263

               
               
               Conread position:143-330
               
               
               Cow position:chr21:19359977-19360167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):27, 175

               
               
               Conread position:143-450
               
               
               Cow position:chr21:35437294-35437580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:143-530
               
               
               Cow position:chr21:46264367-46263988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:145-371
               
               
               Cow position:chr21:734784-734563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):72, 79

               
               
               Conread position:151-415
               
               
               Cow position:chr21:45262621-45262889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 6

               
               
               Conread position:154-535
               
               
               Cow position:chr21:724695-725085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:155-297
               
               
               Cow position:chr21:5341909-5342052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:155-440
               
               
               Cow position:chr21:22465375-22465095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:161-402
               
               
               Cow position:chr21:2809983-2810226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):56, 77

               
               
               Conread position:166-479
               
               
               Cow position:chr21:12723325-12723020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 71

               
               
               Conread position:167-305
               
               
               Cow position:chr21:46451781-46451918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 108

               
               
               Conread position:167-364
               
               
               Cow position:chr21:10538082-10538276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:167-535
               
               
               Cow position:chr21:42384681-42384312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 131

               
               
               Conread position:168-524
               
               
               Cow position:chr21:15911572-15911218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:168-535
               
               
               Cow position:chr21:4399975-4399606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 112

               
               
               Conread position:168-535
               
               
               Cow position:chr21:38121273-38120914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 248

               
               
               Conread position:169-348
               
               
               Cow position:chr21:41046977-41046796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:169-397
               
               
               Cow position:chr21:297925-297694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):49, 148

               
               
               Conread position:169-526
               
               
               Cow position:chr21:28191203-28190844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:169-535
               
               
               Cow position:chr21:21077480-21077136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:169-535
               
               
               Cow position:chr21:25764806-25764442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 163

               
               
               Conread position:169-535
               
               
               Cow position:chr21:29485149-29484791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 67

               
               
               Conread position:169-535
               
               
               Cow position:chr21:33350912-33350549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 120

               
               
               Conread position:170-453
               
               
               Cow position:chr21:35354703-35354419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 117

               
               
               Conread position:171-378
               
               
               Cow position:chr21:471843-471637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):149, 28

               
               
               Conread position:171-514
               
               
               Cow position:chr21:26245083-26244756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:171-535
               
               
               Cow position:chr21:42841428-42841784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):46, 202

               
               
               Conread position:172-356
               
               
               Cow position:chr21:47160386-47160199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):45, 160

               
               
               Conread position:172-530
               
               
               Cow position:chr21:33264012-33263660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 173

               
               
               Conread position:172-532
               
               
               Cow position:chr21:12801579-12801934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 183

               
               
               Conread position:172-535
               
               
               Cow position:chr21:24698648-24698296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:172-535
               
               
               Cow position:chr21:28442900-28442551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:172-535
               
               
               Cow position:chr21:31662635-31662267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 280

               
               
               Conread position:177-363
               
               
               Cow position:chr21:40192141-40192326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 103

               
               
               Conread position:177-496
               
               
               Cow position:chr21:45920895-45921212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:177-535
               
               
               Cow position:chr21:33210351-33210005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 122

               
               
               Conread position:178-347
               
               
               Cow position:chr21:20183233-20183064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):39, 120

               
               
               Conread position:179-444
               
               
               Cow position:chr21:20418521-20418791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:184-529
               
               
               Cow position:chr21:18844856-18845202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 273

               
               
               Conread position:190-535
               
               
               Cow position:chr21:41878619-41878283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):111, 28

               
               
               Conread position:190-535
               
               
               Cow position:chr21:42540072-42540413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 153

               
               
               Conread position:196-525
               
               
               Cow position:chr21:30606942-30607271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 193

               
               
               Conread position:198-529
               
               
               Cow position:chr21:15611282-15610967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:206-488
               
               
               Cow position:chr21:11360169-11359892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):257, 88

               
               
               Conread position:206-534
               
               
               Cow position:chr21:10601241-10601560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 161

               
               
               Conread position:206-535
               
               
               Cow position:chr21:44515398-44515081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 158

               
               
               Conread position:207-530
               
               
               Cow position:chr21:18941701-18942017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:208-525
               
               
               Cow position:chr21:46144091-46143760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 226

               
               
               Conread position:210-435
               
               
               Cow position:chr21:17009111-17008884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 162

               
               
               Conread position:210-524
               
               
               Cow position:chr21:13488657-13488337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 217

               
               
               Conread position:212-535
               
               
               Cow position:chr21:5153748-5153424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):125, 83

               
               
               Conread position:214-478
               
               
               Cow position:chr21:17856669-17856408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 167

               
               
               Conread position:215-535
               
               
               Cow position:chr21:2367456-2367147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 81

               
               
               Conread position:215-535
               
               
               Cow position:chr21:24888123-24887816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):110, 77

               
               
               Conread position:216-530
               
               
               Cow position:chr21:47729898-47730207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 29

               
               
               Conread position:220-535
               
               
               Cow position:chr21:23149902-23150212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:223-533
               
               
               Cow position:chr21:24607502-24607194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):98, 113

               
               
               Conread position:223-534
               
               
               Cow position:chr21:426923-426598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):89, 256

               
               
               Conread position:229-480
               
               
               Cow position:chr21:44733063-44733299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:231-535
               
               
               Cow position:chr21:2904370-2904655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):82, 55

               
               
               Conread position:244-445
               
               
               Cow position:chr21:18041752-18041955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:260-535
               
               
               Cow position:chr21:12960819-12961092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:9-533
               
               
               Cow position:chr22:6494440-6493916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 75

               
               
               Conread position:29-514
               
               
               Cow position:chr22:37139672-37139209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:323
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):20, 54

               
               
               Conread position:29-534
               
               
               Cow position:chr22:7967944-7967439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 16

               
               
               Conread position:29-535
               
               
               Cow position:chr22:22613345-22612851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:32-305
               
               
               Cow position:chr22:35215788-35215515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:39-453
               
               
               Cow position:chr22:23688974-23689388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 24

               
               
               Conread position:40-434
               
               
               Cow position:chr22:27635711-27635314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:42-256
               
               
               Cow position:chr22:13951491-13951279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 23

               
               
               Conread position:43-533
               
               
               Cow position:chr22:15567793-15568277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:44-535
               
               
               Cow position:chr22:12681576-12682052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:46-317
               
               
               Cow position:chr22:33985579-33985845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:47-377
               
               
               Cow position:chr22:23358381-23358044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:47-535
               
               
               Cow position:chr22:25247135-25246650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 97

               
               
               Conread position:48-304
               
               
               Cow position:chr22:4156594-4156849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 29

               
               
               Conread position:50-532
               
               
               Cow position:chr22:18838470-18837998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:50-535
               
               
               Cow position:chr22:44741294-44740846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:51-535
               
               
               Cow position:chr22:1485086-1484602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 30

               
               
               Conread position:52-462
               
               
               Cow position:chr22:1849296-1848873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 119

               
               
               Conread position:52-516
               
               
               Cow position:chr22:7082251-7081784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:52-534
               
               
               Cow position:chr22:18025334-18025816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:53-256
               
               
               Cow position:chr22:1384295-1384098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 58

               
               
               Conread position:53-430
               
               
               Cow position:chr22:15154220-15153838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):58, 19

               
               
               Conread position:54-268
               
               
               Cow position:chr22:7518771-7518559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:54-272
               
               
               Cow position:chr22:26189089-26188870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:54-438
               
               
               Cow position:chr22:10416445-10416048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):162, 57

               
               
               Conread position:54-445
               
               
               Cow position:chr22:6096800-6097197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:54-535
               
               
               Cow position:chr22:24610859-24611336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:340
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):19, 60

               
               
               Conread position:54-535
               
               
               Cow position:chr22:31196273-31196756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:326
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:55-248
               
               
               Cow position:chr22:9154080-9153887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:55-257
               
               
               Cow position:chr22:12853884-12854090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:55-310
               
               
               Cow position:chr22:1821368-1821622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 57

               
               
               Conread position:55-312
               
               
               Cow position:chr22:4656826-4657083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:55-340
               
               
               Cow position:chr22:21527124-21526852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:55-361
               
               
               Cow position:chr22:1659388-1659072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 57

               
               
               Conread position:55-380
               
               
               Cow position:chr22:39215392-39215725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):13, 256

               
               
               Conread position:55-412
               
               
               Cow position:chr22:34632363-34631996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):114, 10

               
               
               Conread position:55-480
               
               
               Cow position:chr22:30999105-30998693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:55-508
               
               
               Cow position:chr22:27826063-27825604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:55-514
               
               
               Cow position:chr22:37066587-37067036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:55-523
               
               
               Cow position:chr22:32892913-32892448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:55-533
               
               
               Cow position:chr22:33447858-33448333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 120

               
               
               Conread position:55-535
               
               
               Cow position:chr22:890939-891399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 116

               
               
               Conread position:55-535
               
               
               Cow position:chr22:1326641-1326159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 140

               
               
               Conread position:55-535
               
               
               Cow position:chr22:3250761-3251249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 257

               
               
               Conread position:55-535
               
               
               Cow position:chr22:15950173-15950637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:56-235
               
               
               Cow position:chr22:30684944-30684765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):6, 88

               
               
               Conread position:56-305
               
               
               Cow position:chr22:39446509-39446258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:56-312
               
               
               Cow position:chr22:12188256-12188518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 232

               
               
               Conread position:56-312
               
               
               Cow position:chr22:12195342-12195605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 233

               
               
               Conread position:56-362
               
               
               Cow position:chr22:34619028-34618705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:57-382
               
               
               Cow position:chr22:1871318-1870990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:57-383
               
               
               Cow position:chr22:37947935-37947611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):153, 27

               
               
               Conread position:57-392
               
               
               Cow position:chr22:27828589-27828263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:57-525
               
               
               Cow position:chr22:6709574-6710025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:57-525
               
               
               Cow position:chr22:26134007-26134485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:57-531
               
               
               Cow position:chr22:10295243-10294794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:57-533
               
               
               Cow position:chr22:23115090-23115563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:57-533
               
               
               Cow position:chr22:38438942-38439416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:57-535
               
               
               Cow position:chr22:6622032-6622505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:57-535
               
               
               Cow position:chr22:34616531-34616049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:324
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):58, 334

               
               
               Conread position:58-451
               
               
               Cow position:chr22:27274475-27274869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):53, 30

               
               
               Conread position:58-535
               
               
               Cow position:chr22:18259430-18258968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:59-530
               
               
               Cow position:chr22:37202062-37201602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:60-253
               
               
               Cow position:chr22:25312731-25312528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:60-316
               
               
               Cow position:chr22:12902643-12902892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):51, 86

               
               
               Conread position:60-356
               
               
               Cow position:chr22:14214158-14214448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:60-455
               
               
               Cow position:chr22:11601247-11600854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:60-514
               
               
               Cow position:chr22:16533285-16532842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 134

               
               
               Conread position:60-515
               
               
               Cow position:chr22:32661727-32661273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 138

               
               
               Conread position:60-530
               
               
               Cow position:chr22:10684888-10685337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 5

               
               
               Conread position:60-530
               
               
               Cow position:chr22:41970944-41971409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 108

               
               
               Conread position:60-535
               
               
               Cow position:chr22:17852428-17852882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:61-448
               
               
               Cow position:chr22:19827647-19828045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:61-530
               
               
               Cow position:chr22:33485415-33485858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 20

               
               
               Conread position:62-299
               
               
               Cow position:chr22:10557483-10557253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:62-305
               
               
               Cow position:chr22:3937272-3937021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:62-306
               
               
               Cow position:chr22:17120665-17120419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:62-315
               
               
               Cow position:chr22:24134110-24134366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 181

               
               
               Conread position:62-329
               
               
               Cow position:chr22:2100740-2101003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:62-364
               
               
               Cow position:chr22:7140859-7140549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):49, 134

               
               
               Conread position:62-370
               
               
               Cow position:chr22:1984065-1983753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:62-445
               
               
               Cow position:chr22:32698973-32698586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:62-454
               
               
               Cow position:chr22:16291722-16292100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:62-458
               
               
               Cow position:chr22:10567510-10567887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:62-497
               
               
               Cow position:chr22:6149178-6149607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:299
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:62-528
               
               
               Cow position:chr22:40048765-40048310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:62-535
               
               
               Cow position:chr22:2404092-2403613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 83

               
               
               Conread position:62-535
               
               
               Cow position:chr22:8357785-8357354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:329
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):153, 16

               
               
               Conread position:62-535
               
               
               Cow position:chr22:23249525-23249972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:322
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:62-535
               
               
               Cow position:chr22:34895168-34894712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:63-239
               
               
               Cow position:chr22:35627559-35627381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:63-257
               
               
               Cow position:chr22:9735478-9735284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 83

               
               
               Conread position:63-267
               
               
               Cow position:chr22:16866252-16866036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 140

               
               
               Conread position:63-402
               
               
               Cow position:chr22:530366-530708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 83

               
               
               Conread position:63-496
               
               
               Cow position:chr22:5616507-5616079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:63-528
               
               
               Cow position:chr22:28071768-28071301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 66

               
               
               Conread position:63-533
               
               
               Cow position:chr22:2623297-2623772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:63-535
               
               
               Cow position:chr22:13957435-13957910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 83

               
               
               Conread position:63-535
               
               
               Cow position:chr22:21012596-21012130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 107

               
               
               Conread position:63-535
               
               
               Cow position:chr22:28371141-28370686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:64-240
               
               
               Cow position:chr22:1105421-1105592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:64-303
               
               
               Cow position:chr22:1776271-1776028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:64-340
               
               
               Cow position:chr22:6176075-6176357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:64-525
               
               
               Cow position:chr22:17949768-17950207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 83

               
               
               Conread position:64-530
               
               
               Cow position:chr22:18926565-18926096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 93

               
               
               Conread position:64-534
               
               
               Cow position:chr22:3301127-3301581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):48, 118

               
               
               Conread position:65-252
               
               
               Cow position:chr22:33031017-33030818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:65-257
               
               
               Cow position:chr22:8571128-8570922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:65-432
               
               
               Cow position:chr22:33399281-33399642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:65-514
               
               
               Cow position:chr22:43812233-43812656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:65-521
               
               
               Cow position:chr22:36432765-36433212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:65-535
               
               
               Cow position:chr22:39507832-39508294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 90

               
               
               Conread position:66-254
               
               
               Cow position:chr22:24890425-24890239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:66-277
               
               
               Cow position:chr22:8327948-8327741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:66-282
               
               
               Cow position:chr22:24071453-24071657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):151, 13

               
               
               Conread position:66-287
               
               
               Cow position:chr22:8710172-8710388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:66-337
               
               
               Cow position:chr22:15737437-15737168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):149, 109

               
               
               Conread position:66-515
               
               
               Cow position:chr22:14690754-14691215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:66-520
               
               
               Cow position:chr22:4060739-4061188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:66-524
               
               
               Cow position:chr22:28639954-28640401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 37

               
               
               Conread position:66-530
               
               
               Cow position:chr22:25917251-25916787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:66-533
               
               
               Cow position:chr22:8732357-8732819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 46

               
               
               Conread position:67-308
               
               
               Cow position:chr22:4164185-4163942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:67-396
               
               
               Cow position:chr22:4560603-4560940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:67-457
               
               
               Cow position:chr22:12803181-12803571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:67-461
               
               
               Cow position:chr22:12316013-12315621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:67-528
               
               
               Cow position:chr22:16621398-16620920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 258

               
               
               Conread position:67-535
               
               
               Cow position:chr22:6610153-6610612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:67-535
               
               
               Cow position:chr22:8138050-8138518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 22

               
               
               Conread position:67-535
               
               
               Cow position:chr22:38313270-38313724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:320
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:68-245
               
               
               Cow position:chr22:5778876-5779056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):20, 155

               
               
               Conread position:68-290
               
               
               Cow position:chr22:2876594-2876816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:68-347
               
               
               Cow position:chr22:9171607-9171331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):5, 28

               
               
               Conread position:68-353
               
               
               Cow position:chr22:16541443-16541732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 103

               
               
               Conread position:68-514
               
               
               Cow position:chr22:7165172-7164716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:314
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:68-533
               
               
               Cow position:chr22:21890162-21890617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:68-535
               
               
               Cow position:chr22:8324453-8323988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 134

               
               
               Conread position:68-535
               
               
               Cow position:chr22:10338902-10339372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:68-535
               
               
               Cow position:chr22:27171064-27171519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:68-535
               
               
               Cow position:chr22:40374811-40374346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:69-311
               
               
               Cow position:chr22:23077275-23077531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:69-426
               
               
               Cow position:chr22:3566368-3566021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:69-529
               
               
               Cow position:chr22:6961076-6960614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 218

               
               
               Conread position:69-533
               
               
               Cow position:chr22:5291056-5290586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:69-535
               
               
               Cow position:chr22:21568192-21567743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 11

               
               
               Conread position:70-274
               
               
               Cow position:chr22:45683832-45684040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:70-359
               
               
               Cow position:chr22:21397712-21397991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:70-438
               
               
               Cow position:chr22:31510160-31510535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 245

               
               
               Conread position:70-528
               
               
               Cow position:chr22:6327571-6328018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:70-535
               
               
               Cow position:chr22:44717923-44717451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:71-251
               
               
               Cow position:chr22:1304353-1304532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:71-287
               
               
               Cow position:chr22:16813997-16813783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:71-303
               
               
               Cow position:chr22:11352244-11352483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:71-334
               
               
               Cow position:chr22:23440074-23440357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:71-349
               
               
               Cow position:chr22:12157647-12157919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 70

               
               
               Conread position:71-364
               
               
               Cow position:chr22:24903793-24903496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:71-388
               
               
               Cow position:chr22:38320505-38320795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:71-411
               
               
               Cow position:chr22:16094704-16095041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:71-484
               
               
               Cow position:chr22:4373235-4372833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 11

               
               
               Conread position:71-535
               
               
               Cow position:chr22:6092464-6092902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:309
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:72-450
               
               
               Cow position:chr22:12389303-12388913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:73-254
               
               
               Cow position:chr22:17746019-17745831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:73-287
               
               
               Cow position:chr22:7584043-7584251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:73-297
               
               
               Cow position:chr22:26233833-26233608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-334
               
               
               Cow position:chr22:4054403-4054647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:73-340
               
               
               Cow position:chr22:1350027-1349756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):128, 36

               
               
               Conread position:73-345
               
               
               Cow position:chr22:2109430-2109695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:73-347
               
               
               Cow position:chr22:12678221-12678494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:73-353
               
               
               Cow position:chr22:42618195-42617918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 86

               
               
               Conread position:73-454
               
               
               Cow position:chr22:12313619-12313240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:73-472
               
               
               Cow position:chr22:14378491-14378880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 166

               
               
               Conread position:73-530
               
               
               Cow position:chr22:6419804-6419341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:73-531
               
               
               Cow position:chr22:11813524-11813972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:315
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:73-533
               
               
               Cow position:chr22:4044123-4043675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:73-533
               
               
               Cow position:chr22:41982523-41982973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:73-535
               
               
               Cow position:chr22:11613626-11613168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 99

               
               
               Conread position:73-535
               
               
               Cow position:chr22:14178629-14179091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:73-535
               
               
               Cow position:chr22:27322498-27322059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:316
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):273, 31

               
               
               Conread position:74-346
               
               
               Cow position:chr22:26056668-26056943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:74-479
               
               
               Cow position:chr22:41898250-41898652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:74-521
               
               
               Cow position:chr22:7882748-7882303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:74-535
               
               
               Cow position:chr22:17152887-17152419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:74-535
               
               
               Cow position:chr22:18020832-18021281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 45

               
               
               Conread position:75-382
               
               
               Cow position:chr22:6852383-6852694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:75-402
               
               
               Cow position:chr22:19891157-19890830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:75-446
               
               
               Cow position:chr22:17132209-17132585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:76-431
               
               
               Cow position:chr22:43131357-43131708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:76-518
               
               
               Cow position:chr22:28357224-28356792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 80

               
               
               Conread position:76-535
               
               
               Cow position:chr22:43787945-43788390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:79-246
               
               
               Cow position:chr22:33565902-33566069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:79-266
               
               
               Cow position:chr22:28493087-28493273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 126

               
               
               Conread position:79-281
               
               
               Cow position:chr22:1523416-1523209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 148

               
               
               Conread position:79-307
               
               
               Cow position:chr22:14141147-14141377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):33, 67

               
               
               Conread position:79-388
               
               
               Cow position:chr22:899032-898730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:79-436
               
               
               Cow position:chr22:45808023-45807675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 62

               
               
               Conread position:79-445
               
               
               Cow position:chr22:3367390-3367018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:79-535
               
               
               Cow position:chr22:20627027-20626581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 75

               
               
               Conread position:81-277
               
               
               Cow position:chr22:4628754-4628548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:81-382
               
               
               Cow position:chr22:12892169-12892477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 277

               
               
               Conread position:81-534
               
               
               Cow position:chr22:10936657-10937092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 175

               
               
               Conread position:81-534
               
               
               Cow position:chr22:13866860-13866387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:315
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):31, 114

               
               
               Conread position:81-535
               
               
               Cow position:chr22:8418656-8418208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 114

               
               
               Conread position:81-535
               
               
               Cow position:chr22:34726867-34726414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 135

               
               
               Conread position:82-392
               
               
               Cow position:chr22:19459853-19460158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 110

               
               
               Conread position:82-504
               
               
               Cow position:chr22:26166427-26166844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 163

               
               
               Conread position:82-535
               
               
               Cow position:chr22:14245247-14245679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 124

               
               
               Conread position:85-535
               
               
               Cow position:chr22:4357271-4356839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 59

               
               
               Conread position:88-416
               
               
               Cow position:chr22:40789742-40789424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 32

               
               
               Conread position:88-530
               
               
               Cow position:chr22:10532678-10532241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 62

               
               
               Conread position:88-533
               
               
               Cow position:chr22:16273826-16273376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 103

               
               
               Conread position:88-534
               
               
               Cow position:chr22:39472176-39472635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:88-535
               
               
               Cow position:chr22:13669982-13670430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:89-360
               
               
               Cow position:chr22:43321535-43321259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:89-530
               
               
               Cow position:chr22:59797-59351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:89-535
               
               
               Cow position:chr22:10609541-10609069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:317
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):22, 8

               
               
               Conread position:89-535
               
               
               Cow position:chr22:10631572-10631115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:90-246
               
               
               Cow position:chr22:8480292-8480129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:91-535
               
               
               Cow position:chr22:30484086-30483652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 63

               
               
               Conread position:95-535
               
               
               Cow position:chr22:4988386-4988819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:279
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):122, 99

               
               
               Conread position:104-409
               
               
               Cow position:chr22:27619903-27619592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:104-486
               
               
               Cow position:chr22:15024943-15025320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):113, 44

               
               
               Conread position:104-535
               
               
               Cow position:chr22:29289983-29290396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 26

               
               
               Conread position:109-296
               
               
               Cow position:chr22:30253377-30253176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:109-532
               
               
               Cow position:chr22:15039023-15039442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:109-535
               
               
               Cow position:chr22:4119402-4119828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 43

               
               
               Conread position:110-496
               
               
               Cow position:chr22:15068589-15068205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 76

               
               
               Conread position:111-481
               
               
               Cow position:chr22:3909092-3908713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:249
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):69, 81

               
               
               Conread position:117-365
               
               
               Cow position:chr22:4315787-4315534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:123-437
               
               
               Cow position:chr22:16053456-16053142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:133-268
               
               
               Cow position:chr22:749273-749409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:133-297
               
               
               Cow position:chr22:10324021-10323855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:133-434
               
               
               Cow position:chr22:19173840-19173536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 35

               
               
               Conread position:135-391
               
               
               Cow position:chr22:6936394-6936145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:139-496
               
               
               Cow position:chr22:10633049-10632695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:140-528
               
               
               Cow position:chr22:4017606-4017222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 102

               
               
               Conread position:141-345
               
               
               Cow position:chr22:26706677-26706880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:143-305
               
               
               Cow position:chr22:1977879-1977716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:143-312
               
               
               Cow position:chr22:23036295-23036124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:143-502
               
               
               Cow position:chr22:43119599-43119955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 154

               
               
               Conread position:143-530
               
               
               Cow position:chr22:3317248-3316874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:143-535
               
               
               Cow position:chr22:17764508-17764115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 36

               
               
               Conread position:143-535
               
               
               Cow position:chr22:27431575-27431943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:144-348
               
               
               Cow position:chr22:10553556-10553760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 151

               
               
               Conread position:158-535
               
               
               Cow position:chr22:5337483-5337858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:160-535
               
               
               Cow position:chr22:846016-845643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 206

               
               
               Conread position:162-535
               
               
               Cow position:chr22:8481755-8481387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 154

               
               
               Conread position:166-534
               
               
               Cow position:chr22:21355034-21355400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 142

               
               
               Conread position:167-393
               
               
               Cow position:chr22:12527016-12527247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:167-535
               
               
               Cow position:chr22:1591130-1590760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 299

               
               
               Conread position:167-535
               
               
               Cow position:chr22:10421139-10420760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:167-535
               
               
               Cow position:chr22:34750779-34750417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 58

               
               
               Conread position:168-412
               
               
               Cow position:chr22:34735969-34735727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):49, 129

               
               
               Conread position:168-504
               
               
               Cow position:chr22:13300516-13300181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 141

               
               
               Conread position:168-535
               
               
               Cow position:chr22:4645876-4645517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:168-535
               
               
               Cow position:chr22:9977914-9977560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:169-400
               
               
               Cow position:chr22:25387431-25387195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:169-528
               
               
               Cow position:chr22:590443-590090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 286

               
               
               Conread position:169-529
               
               
               Cow position:chr22:30699282-30698926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:169-530
               
               
               Cow position:chr22:30049462-30049828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 294

               
               
               Conread position:169-534
               
               
               Cow position:chr22:864411-864777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 25

               
               
               Conread position:169-535
               
               
               Cow position:chr22:21295621-21295984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:169-535
               
               
               Cow position:chr22:21502848-21502476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 23

               
               
               Conread position:169-535
               
               
               Cow position:chr22:25742845-25743213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 255

               
               
               Conread position:170-392
               
               
               Cow position:chr22:4011288-4011063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):10, 142

               
               
               Conread position:171-315
               
               
               Cow position:chr22:1838410-1838268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 118

               
               
               Conread position:171-353
               
               
               Cow position:chr22:12686584-12686757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 67

               
               
               Conread position:171-370
               
               
               Cow position:chr22:10669372-10669573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:171-524
               
               
               Cow position:chr22:44180695-44180344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:171-527
               
               
               Cow position:chr22:3965288-3964933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):46, 139

               
               
               Conread position:171-530
               
               
               Cow position:chr22:16044314-16044684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 27

               
               
               Conread position:171-534
               
               
               Cow position:chr22:17814334-17813969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 67

               
               
               Conread position:171-535
               
               
               Cow position:chr22:877617-877263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 236

               
               
               Conread position:171-535
               
               
               Cow position:chr22:41245356-41244986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):87, 297

               
               
               Conread position:172-364
               
               
               Cow position:chr22:10835390-10835576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):170, 23

               
               
               Conread position:172-443
               
               
               Cow position:chr22:14638376-14638652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 148

               
               
               Conread position:172-512
               
               
               Cow position:chr22:36633324-36632996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:172-535
               
               
               Cow position:chr22:14924631-14924984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:173-334
               
               
               Cow position:chr22:21235332-21235495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:177-534
               
               
               Cow position:chr22:40720198-40720546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:184-535
               
               
               Cow position:chr22:22160815-22160461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 284

               
               
               Conread position:196-363
               
               
               Cow position:chr22:41979769-41979935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:201-530
               
               
               Cow position:chr22:1265852-1266190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 235

               
               
               Conread position:201-535
               
               
               Cow position:chr22:17992959-17993290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:201-535
               
               
               Cow position:chr22:34398384-34398715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:204-530
               
               
               Cow position:chr22:912167-911847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 85

               
               
               Conread position:207-535
               
               
               Cow position:chr22:14882050-14882371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:210-519
               
               
               Cow position:chr22:10983413-10983099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 156

               
               
               Conread position:210-531
               
               
               Cow position:chr22:8116025-8116338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):8, 84

               
               
               Conread position:210-534
               
               
               Cow position:chr22:1279322-1279645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):7, 247

               
               
               Conread position:210-535
               
               
               Cow position:chr22:15760425-15760096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):7, 49

               
               
               Conread position:210-535
               
               
               Cow position:chr22:16812101-16812423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):7, 113

               
               
               Conread position:212-481
               
               
               Cow position:chr22:5675121-5675377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):140, 12

               
               
               Conread position:212-535
               
               
               Cow position:chr22:3993670-3993350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 87

               
               
               Conread position:218-484
               
               
               Cow position:chr22:10677937-10678193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:220-516
               
               
               Cow position:chr22:1640248-1640549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):103, 77

               
               
               Conread position:223-533
               
               
               Cow position:chr22:226405-226694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):84, 119

               
               
               Conread position:238-530
               
               
               Cow position:chr22:1987028-1986754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):278, 59

               
               
               Conread position:239-525
               
               
               Cow position:chr22:41270968-41271241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 58

               
               
               Conread position:34-386
               
               
               Cow position:chr23:1221996-1222349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:38-427
               
               
               Cow position:chr23:38271-37886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):73, 85

               
               
               Conread position:39-360
               
               
               Cow position:chr23:14462750-14462429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):139, 34

               
               
               Conread position:42-418
               
               
               Cow position:chr23:3408648-3409046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:280
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):35, 326

               
               
               Conread position:43-390
               
               
               Cow position:chr23:40348408-40348755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):6, 113

               
               
               Conread position:46-266
               
               
               Cow position:chr23:10815721-10815945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 84

               
               
               Conread position:46-444
               
               
               Cow position:chr23:19221406-19221820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 149

               
               
               Conread position:47-271
               
               
               Cow position:chr23:24718573-24718795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:48-296
               
               
               Cow position:chr23:4090652-4090409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):63, 176

               
               
               Conread position:48-355
               
               
               Cow position:chr23:11225086-11224779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:48-530
               
               
               Cow position:chr23:21788537-21789021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 113

               
               
               Conread position:49-290
               
               
               Cow position:chr23:1194265-1194504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 97

               
               
               Conread position:50-535
               
               
               Cow position:chr23:39778624-39778158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:52-251
               
               
               Cow position:chr23:5603519-5603719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:52-412
               
               
               Cow position:chr23:12363393-12363754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 10

               
               
               Conread position:52-479
               
               
               Cow position:chr23:5451550-5451123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 222

               
               
               Conread position:54-272
               
               
               Cow position:chr23:9131739-9131955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):57, 73

               
               
               Conread position:54-282
               
               
               Cow position:chr23:27849218-27848992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):163, 113

               
               
               Conread position:54-443
               
               
               Cow position:chr23:35942417-35942049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):154, 57

               
               
               Conread position:55-249
               
               
               Cow position:chr23:1490577-1490390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:55-286
               
               
               Cow position:chr23:40737791-40738027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):56, 135

               
               
               Conread position:55-307
               
               
               Cow position:chr23:2471230-2470973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):21, 143

               
               
               Conread position:55-347
               
               
               Cow position:chr23:18384941-18384653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-357
               
               
               Cow position:chr23:18748852-18749144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:55-377
               
               
               Cow position:chr23:24966238-24966559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:55-392
               
               
               Cow position:chr23:1656115-1655779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:55-457
               
               
               Cow position:chr23:25675476-25675874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:55-486
               
               
               Cow position:chr23:24929848-24930278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:284
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:55-520
               
               
               Cow position:chr23:8698648-8698203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:55-533
               
               
               Cow position:chr23:18802045-18802526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-535
               
               
               Cow position:chr23:8293738-8293246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 150

               
               
               Conread position:55-535
               
               
               Cow position:chr23:16246960-16246489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:55-535
               
               
               Cow position:chr23:31601227-31601713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:56-366
               
               
               Cow position:chr23:24927046-24926722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):59, 9

               
               
               Conread position:56-409
               
               
               Cow position:chr23:5732758-5732417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 5

               
               
               Conread position:56-426
               
               
               Cow position:chr23:10829358-10829732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:56-453
               
               
               Cow position:chr23:8837469-8837864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:272
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:56-475
               
               
               Cow position:chr23:5426661-5426233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 409

               
               
               Conread position:57-267
               
               
               Cow position:chr23:809730-809516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 112

               
               
               Conread position:57-393
               
               
               Cow position:chr23:307681-307341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):19, 301

               
               
               Conread position:57-456
               
               
               Cow position:chr23:1942954-1942545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:58-533
               
               
               Cow position:chr23:40778485-40778010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 130

               
               
               Conread position:60-343
               
               
               Cow position:chr23:40995383-40995107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:60-347
               
               
               Cow position:chr23:35965369-35965074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):7, 242

               
               
               Conread position:60-367
               
               
               Cow position:chr23:1103466-1103155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):52, 118

               
               
               Conread position:60-393
               
               
               Cow position:chr23:26825271-26824975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):156, 28

               
               
               Conread position:60-449
               
               
               Cow position:chr23:39049221-39049598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:271
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):54, 84

               
               
               Conread position:60-503
               
               
               Cow position:chr23:16689848-16690284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:60-535
               
               
               Cow position:chr23:26986055-26986529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 20

               
               
               Conread position:61-346
               
               
               Cow position:chr23:39330077-39330357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:61-348
               
               
               Cow position:chr23:5881303-5881588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:61-403
               
               
               Cow position:chr23:35149970-35149626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:61-434
               
               
               Cow position:chr23:18286401-18286039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 51

               
               
               Conread position:62-275
               
               
               Cow position:chr23:7155482-7155690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 83

               
               
               Conread position:62-397
               
               
               Cow position:chr23:11081475-11081137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 132

               
               
               Conread position:62-402
               
               
               Cow position:chr23:36172747-36172396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:62-407
               
               
               Cow position:chr23:1438494-1438166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 20

               
               
               Conread position:62-504
               
               
               Cow position:chr23:20557621-20558082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):25, 130

               
               
               Conread position:62-533
               
               
               Cow position:chr23:29626643-29626161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 406

               
               
               Conread position:62-535
               
               
               Cow position:chr23:534445-533975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 86

               
               
               Conread position:62-535
               
               
               Cow position:chr23:7845504-7845032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 11

               
               
               Conread position:63-342
               
               
               Cow position:chr23:19565663-19565385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:63-363
               
               
               Cow position:chr23:3293903-3293605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:63-474
               
               
               Cow position:chr23:33570346-33569942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:63-535
               
               
               Cow position:chr23:1290521-1290045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:63-535
               
               
               Cow position:chr23:5617791-5617324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:64-253
               
               
               Cow position:chr23:23104275-23104462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:64-296
               
               
               Cow position:chr23:3234559-3234800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 135

               
               
               Conread position:64-300
               
               
               Cow position:chr23:22238605-22238844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:64-504
               
               
               Cow position:chr23:5723740-5723320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):151, 24

               
               
               Conread position:64-535
               
               
               Cow position:chr23:33711978-33711517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:316
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:65-269
               
               
               Cow position:chr23:6179336-6179537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:65-293
               
               
               Cow position:chr23:17597636-17597411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:65-294
               
               
               Cow position:chr23:1877683-1877912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:65-307
               
               
               Cow position:chr23:28798304-28798048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 205

               
               
               Conread position:65-328
               
               
               Cow position:chr23:18823198-18822940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:65-381
               
               
               Cow position:chr23:24685454-24685147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:65-533
               
               
               Cow position:chr23:20744371-20744842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:65-535
               
               
               Cow position:chr23:4528652-4529147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:328
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:66-256
               
               
               Cow position:chr23:20596378-20596573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:66-348
               
               
               Cow position:chr23:16961497-16961226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:66-520
               
               
               Cow position:chr23:29521685-29521230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:300
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:67-339
               
               
               Cow position:chr23:40275346-40275605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):147, 15

               
               
               Conread position:67-443
               
               
               Cow position:chr23:16744755-16744380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:67-460
               
               
               Cow position:chr23:3281898-3282299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 292

               
               
               Conread position:67-489
               
               
               Cow position:chr23:30585439-30585870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-530
               
               
               Cow position:chr23:13555221-13555678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:308
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):53, 177

               
               
               Conread position:68-219
               
               
               Cow position:chr23:2511356-2511204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:68-233
               
               
               Cow position:chr23:41478087-41477923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:68-302
               
               
               Cow position:chr23:22668301-22668531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:68-493
               
               
               Cow position:chr23:40790176-40789773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:68-534
               
               
               Cow position:chr23:2281977-2282428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 43

               
               
               Conread position:69-387
               
               
               Cow position:chr23:22573698-22574027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:71-298
               
               
               Cow position:chr23:1760625-1760866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:71-374
               
               
               Cow position:chr23:3223234-3223534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 165

               
               
               Conread position:73-245
               
               
               Cow position:chr23:20725485-20725655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:73-247
               
               
               Cow position:chr23:33702185-33702364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:73-290
               
               
               Cow position:chr23:40500891-40501110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:73-312
               
               
               Cow position:chr23:35930154-35929916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:73-323
               
               
               Cow position:chr23:25990232-25990483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:73-345
               
               
               Cow position:chr23:1981467-1981721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 36

               
               
               Conread position:73-346
               
               
               Cow position:chr23:1863666-1863404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):57, 81

               
               
               Conread position:73-347
               
               
               Cow position:chr23:40637470-40637187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:73-402
               
               
               Cow position:chr23:22414103-22414419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:73-496
               
               
               Cow position:chr23:4505018-4504612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:73-514
               
               
               Cow position:chr23:10416222-10416656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:308
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:73-522
               
               
               Cow position:chr23:1884967-1885418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:73-535
               
               
               Cow position:chr23:11314810-11315272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 268

               
               
               Conread position:73-535
               
               
               Cow position:chr23:16880964-16881412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-535
               
               
               Cow position:chr23:26841628-26841194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:73-535
               
               
               Cow position:chr23:31494075-31493623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 281

               
               
               Conread position:74-307
               
               
               Cow position:chr23:5449925-5449677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 141

               
               
               Conread position:75-265
               
               
               Cow position:chr23:5685992-5686184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:75-348
               
               
               Cow position:chr23:33629126-33628856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:75-361
               
               
               Cow position:chr23:32322666-32322958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:75-392
               
               
               Cow position:chr23:3244711-3245031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:75-392
               
               
               Cow position:chr23:5436436-5436756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:75-453
               
               
               Cow position:chr23:12334426-12334034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 165

               
               
               Conread position:75-530
               
               
               Cow position:chr23:26794709-26795154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:299
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:75-533
               
               
               Cow position:chr23:4968327-4968772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 42

               
               
               Conread position:76-273
               
               
               Cow position:chr23:24809234-24809433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:76-534
               
               
               Cow position:chr23:24509887-24509449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:77-535
               
               
               Cow position:chr23:22297828-22298271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 167

               
               
               Conread position:78-276
               
               
               Cow position:chr23:5447924-5448124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:78-535
               
               
               Cow position:chr23:20194729-20195173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:315
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:79-535
               
               
               Cow position:chr23:22804922-22804467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:81-365
               
               
               Cow position:chr23:40391673-40391388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:81-379
               
               
               Cow position:chr23:10497894-10497606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:81-405
               
               
               Cow position:chr23:5795674-5795349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:81-533
               
               
               Cow position:chr23:6172488-6172915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:82-445
               
               
               Cow position:chr23:8923796-8923438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:84-514
               
               
               Cow position:chr23:29470946-29471352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:297
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):131, 105

               
               
               Conread position:85-533
               
               
               Cow position:chr23:41472819-41472360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:304
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:88-412
               
               
               Cow position:chr23:5436810-5437134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:89-274
               
               
               Cow position:chr23:36022602-36022781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 73

               
               
               Conread position:89-328
               
               
               Cow position:chr23:2160452-2160685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:89-347
               
               
               Cow position:chr23:22587068-22586820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:89-357
               
               
               Cow position:chr23:24700886-24701169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 156

               
               
               Conread position:89-444
               
               
               Cow position:chr23:18415867-18416216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):261, 42

               
               
               Conread position:89-514
               
               
               Cow position:chr23:34314762-34315203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 98

               
               
               Conread position:97-362
               
               
               Cow position:chr23:17486645-17486912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:100-482
               
               
               Cow position:chr23:16631451-16631063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):11, 93

               
               
               Conread position:102-379
               
               
               Cow position:chr23:18036480-18036760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:104-360
               
               
               Cow position:chr23:18238352-18238610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):77, 86

               
               
               Conread position:104-367
               
               
               Cow position:chr23:11771153-11770900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 41

               
               
               Conread position:104-401
               
               
               Cow position:chr23:468292-468585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 22

               
               
               Conread position:109-530
               
               
               Cow position:chr23:7835317-7835747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:294
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):93, 73

               
               
               Conread position:112-389
               
               
               Cow position:chr23:7398680-7398398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:112-392
               
               
               Cow position:chr23:306689-306409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):101, 242

               
               
               Conread position:113-297
               
               
               Cow position:chr23:4501907-4501733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:119-293
               
               
               Cow position:chr23:5786001-5785829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:123-424
               
               
               Cow position:chr23:5540298-5540014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:126-493
               
               
               Cow position:chr23:21765066-21764705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 17

               
               
               Conread position:133-402
               
               
               Cow position:chr23:16076019-16076285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:135-340
               
               
               Cow position:chr23:5400804-5400604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):160, 26

               
               
               Conread position:140-389
               
               
               Cow position:chr23:39276037-39275777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:151-518
               
               
               Cow position:chr23:6367730-6367368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 23

               
               
               Conread position:153-520
               
               
               Cow position:chr23:1397913-1398276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 142

               
               
               Conread position:155-533
               
               
               Cow position:chr23:29034440-29034060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:156-530
               
               
               Cow position:chr23:1720859-1721237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 114

               
               
               Conread position:167-523
               
               
               Cow position:chr23:5707105-5706756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 147

               
               
               Conread position:167-535
               
               
               Cow position:chr23:9268691-9268335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 70

               
               
               Conread position:168-360
               
               
               Cow position:chr23:5237309-5237512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:168-455
               
               
               Cow position:chr23:7361218-7360939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:168-528
               
               
               Cow position:chr23:8063654-8063305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 128

               
               
               Conread position:169-304
               
               
               Cow position:chr23:18605298-18605433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):46, 69

               
               
               Conread position:169-306
               
               
               Cow position:chr23:17231257-17231121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:169-337
               
               
               Cow position:chr23:3814171-3814341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:169-340
               
               
               Cow position:chr23:1589699-1589524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-340
               
               
               Cow position:chr23:13202249-13202423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:169-346
               
               
               Cow position:chr23:348838-349018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:169-368
               
               
               Cow position:chr23:1403696-1403896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:169-390
               
               
               Cow position:chr23:1876821-1876597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-428
               
               
               Cow position:chr23:21502521-21502789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-535
               
               
               Cow position:chr23:29458989-29459343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:170-347
               
               
               Cow position:chr23:35368938-35369114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:171-530
               
               
               Cow position:chr23:11045594-11045234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:171-535
               
               
               Cow position:chr23:1923729-1924088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 117

               
               
               Conread position:171-535
               
               
               Cow position:chr23:40525876-40526223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:177-348
               
               
               Cow position:chr23:4470398-4470571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:177-418
               
               
               Cow position:chr23:17404940-17404697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:177-535
               
               
               Cow position:chr23:2799682-2799313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 283

               
               
               Conread position:179-533
               
               
               Cow position:chr23:24867409-24867049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 285

               
               
               Conread position:183-530
               
               
               Cow position:chr23:39806965-39806623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:186-514
               
               
               Cow position:chr23:12050448-12050132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:189-320
               
               
               Cow position:chr23:7138257-7138385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):26, 69

               
               
               Conread position:189-535
               
               
               Cow position:chr23:4980457-4980798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:195-434
               
               
               Cow position:chr23:4329591-4329839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:196-535
               
               
               Cow position:chr23:1254770-1254422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):20, 99

               
               
               Conread position:197-456
               
               
               Cow position:chr23:40844733-40844473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):11, 107

               
               
               Conread position:206-424
               
               
               Cow position:chr23:1599594-1599373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 149

               
               
               Conread position:206-511
               
               
               Cow position:chr23:21660016-21659707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:212-535
               
               
               Cow position:chr23:8911528-8911223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):138, 98

               
               
               Conread position:214-436
               
               
               Cow position:chr23:33622086-33622312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:216-495
               
               
               Cow position:chr23:1490102-1489842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):126, 80

               
               
               Conread position:230-400
               
               
               Cow position:chr23:2801635-2801808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 136

               
               
               Conread position:239-364
               
               
               Cow position:chr23:23104678-23104807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:244-434
               
               
               Cow position:chr23:16664536-16664724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):57, 108

               
               
               Conread position:261-533
               
               
               Cow position:chr23:4338594-4338860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):202, 84

               
               
               Conread position:27-535
               
               
               Cow position:chr24:20225971-20225456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 177

               
               
               Conread position:43-402
               
               
               Cow position:chr24:18281424-18281787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):34, 137

               
               
               Conread position:44-523
               
               
               Cow position:chr24:41980453-41980931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:49-489
               
               
               Cow position:chr24:20588377-20587931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:287
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):29, 10

               
               
               Conread position:52-248
               
               
               Cow position:chr24:24693022-24692824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:52-383
               
               
               Cow position:chr24:29605836-29606176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:54-346
               
               
               Cow position:chr24:13948319-13948027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:54-376
               
               
               Cow position:chr24:39523253-39523573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:54-390
               
               
               Cow position:chr24:36711398-36711061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):33, 143

               
               
               Conread position:54-427
               
               
               Cow position:chr24:18356859-18357230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 43

               
               
               Conread position:55-235
               
               
               Cow position:chr24:36286765-36286585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 92

               
               
               Conread position:55-268
               
               
               Cow position:chr24:18302912-18302697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:55-325
               
               
               Cow position:chr24:42175724-42175462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 93

               
               
               Conread position:55-348
               
               
               Cow position:chr24:39910832-39911133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):22, 143

               
               
               Conread position:55-387
               
               
               Cow position:chr24:23863430-23863771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:55-472
               
               
               Cow position:chr24:6103024-6102605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:55-489
               
               
               Cow position:chr24:30236065-30235635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 10

               
               
               Conread position:55-533
               
               
               Cow position:chr24:28303165-28303627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 149

               
               
               Conread position:55-533
               
               
               Cow position:chr24:32054841-32054392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 54

               
               
               Conread position:55-535
               
               
               Cow position:chr24:24490830-24491295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:56-232
               
               
               Cow position:chr24:21656606-21656425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 5

               
               
               Conread position:56-305
               
               
               Cow position:chr24:2380152-2379898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:56-533
               
               
               Cow position:chr24:43028131-43028605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:56-535
               
               
               Cow position:chr24:38815170-38814690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 141

               
               
               Conread position:58-311
               
               
               Cow position:chr24:5360902-5360659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):53, 6

               
               
               Conread position:58-347
               
               
               Cow position:chr24:27958274-27958571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:58-511
               
               
               Cow position:chr24:44870191-44869758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 93

               
               
               Conread position:59-341
               
               
               Cow position:chr24:27285014-27284731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:59-508
               
               
               Cow position:chr24:10499412-10498955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 177

               
               
               Conread position:60-304
               
               
               Cow position:chr24:22133354-22133118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):38, 5

               
               
               Conread position:60-350
               
               
               Cow position:chr24:28043184-28042874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:60-353
               
               
               Cow position:chr24:23574969-23575258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:60-468
               
               
               Cow position:chr24:6131691-6132091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:62-279
               
               
               Cow position:chr24:3412870-3412655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:62-299
               
               
               Cow position:chr24:28510981-28510749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 95

               
               
               Conread position:62-354
               
               
               Cow position:chr24:230471-230172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:62-390
               
               
               Cow position:chr24:10242597-10242921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:62-418
               
               
               Cow position:chr24:9036382-9036028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 134

               
               
               Conread position:62-426
               
               
               Cow position:chr24:37038085-37037723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 86

               
               
               Conread position:62-434
               
               
               Cow position:chr24:19801031-19800662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:62-436
               
               
               Cow position:chr24:27219900-27220277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:62-533
               
               
               Cow position:chr24:18484800-18485279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 130

               
               
               Conread position:62-534
               
               
               Cow position:chr24:40301347-40300875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:62-535
               
               
               Cow position:chr24:5142129-5141660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:62-535
               
               
               Cow position:chr24:15057573-15057122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr24:27844345-27844801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:63-340
               
               
               Cow position:chr24:175318-175585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:63-493
               
               
               Cow position:chr24:17284792-17285236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:64-284
               
               
               Cow position:chr24:7757956-7757739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:64-298
               
               
               Cow position:chr24:21834774-21835006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:64-481
               
               
               Cow position:chr24:22689385-22689812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 131

               
               
               Conread position:65-219
               
               
               Cow position:chr24:41926003-41925854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):151, 76

               
               
               Conread position:65-246
               
               
               Cow position:chr24:25947671-25947857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:65-303
               
               
               Cow position:chr24:29984803-29985037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:65-402
               
               
               Cow position:chr24:17751920-17752265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):24, 131

               
               
               Conread position:65-530
               
               
               Cow position:chr24:18731925-18732399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:65-535
               
               
               Cow position:chr24:11887340-11886881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 74

               
               
               Conread position:65-535
               
               
               Cow position:chr24:30229658-30229185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:66-283
               
               
               Cow position:chr24:29539743-29539961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:66-290
               
               
               Cow position:chr24:42226449-42226234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):147, 16

               
               
               Conread position:66-311
               
               
               Cow position:chr24:27740364-27740135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):151, 31

               
               
               Conread position:66-444
               
               
               Cow position:chr24:16089417-16089042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 113

               
               
               Conread position:66-514
               
               
               Cow position:chr24:27607925-27608357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 80

               
               
               Conread position:67-287
               
               
               Cow position:chr24:32890862-32891080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 88

               
               
               Conread position:67-343
               
               
               Cow position:chr24:27348987-27349271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):20, 176

               
               
               Conread position:67-436
               
               
               Cow position:chr24:16645136-16645512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:67-535
               
               
               Cow position:chr24:33621295-33621767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:69-445
               
               
               Cow position:chr24:44987190-44987578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:69-530
               
               
               Cow position:chr24:36403975-36404423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:70-402
               
               
               Cow position:chr24:27630579-27630251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:71-366
               
               
               Cow position:chr24:37974802-37975097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:71-530
               
               
               Cow position:chr24:30313847-30314312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:71-534
               
               
               Cow position:chr24:27725826-27726284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 108

               
               
               Conread position:72-530
               
               
               Cow position:chr24:28063130-28062669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:72-535
               
               
               Cow position:chr24:17104392-17104848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 69

               
               
               Conread position:73-356
               
               
               Cow position:chr24:43537138-43536847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:73-382
               
               
               Cow position:chr24:27713231-27713536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):41, 82

               
               
               Conread position:73-529
               
               
               Cow position:chr24:2402198-2402649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 38

               
               
               Conread position:73-533
               
               
               Cow position:chr24:3165998-3165542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:73-535
               
               
               Cow position:chr24:1269956-1269523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:73-535
               
               
               Cow position:chr24:29595621-29596092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 234

               
               
               Conread position:73-535
               
               
               Cow position:chr24:34762075-34761615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:307
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:73-535
               
               
               Cow position:chr24:42103540-42103095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:74-246
               
               
               Cow position:chr24:34772124-34772308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:74-351
               
               
               Cow position:chr24:28600260-28600538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):141, 69

               
               
               Conread position:74-527
               
               
               Cow position:chr24:24755607-24755182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 37

               
               
               Conread position:74-533
               
               
               Cow position:chr24:28553394-28553823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 67

               
               
               Conread position:75-326
               
               
               Cow position:chr24:2992703-2992952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:75-340
               
               
               Cow position:chr24:15289004-15288732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:75-345
               
               
               Cow position:chr24:20364239-20364503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 55

               
               
               Conread position:75-447
               
               
               Cow position:chr24:25756121-25756483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:75-535
               
               
               Cow position:chr24:28496406-28496869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:76-353
               
               
               Cow position:chr24:37823700-37823427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:76-533
               
               
               Cow position:chr24:7914185-7913719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:76-533
               
               
               Cow position:chr24:35675707-35675264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:76-535
               
               
               Cow position:chr24:37650851-37650389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 130

               
               
               Conread position:79-529
               
               
               Cow position:chr24:18374937-18374499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 88

               
               
               Conread position:81-535
               
               
               Cow position:chr24:39849721-39850158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:82-535
               
               
               Cow position:chr24:17860092-17860532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:85-338
               
               
               Cow position:chr24:25122504-25122267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:85-380
               
               
               Cow position:chr24:42004336-42004046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):133, 90

               
               
               Conread position:88-377
               
               
               Cow position:chr24:29561415-29561701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:88-529
               
               
               Cow position:chr24:27096855-27096410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 100

               
               
               Conread position:89-530
               
               
               Cow position:chr24:23556174-23556605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:89-535
               
               
               Cow position:chr24:18741402-18741852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 216

               
               
               Conread position:89-535
               
               
               Cow position:chr24:28599711-28600135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):128, 51

               
               
               Conread position:89-535
               
               
               Cow position:chr24:36173616-36174064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:91-323
               
               
               Cow position:chr24:41916418-41916183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):20, 63

               
               
               Conread position:91-434
               
               
               Cow position:chr24:7476189-7476537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):20, 86

               
               
               Conread position:91-535
               
               
               Cow position:chr24:31816736-31816304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:104-415
               
               
               Cow position:chr24:39290192-39289887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:104-456
               
               
               Cow position:chr24:22225336-22224975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:106-535
               
               
               Cow position:chr24:20874823-20874395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 37

               
               
               Conread position:109-535
               
               
               Cow position:chr24:20943300-20942896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:290
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):239, 42

               
               
               Conread position:110-383
               
               
               Cow position:chr24:24061664-24061943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:110-445
               
               
               Cow position:chr24:28990701-28990374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 51

               
               
               Conread position:110-533
               
               
               Cow position:chr24:32693861-32693423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 90

               
               
               Conread position:112-436
               
               
               Cow position:chr24:26554457-26554787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):31, 67

               
               
               Conread position:113-474
               
               
               Cow position:chr24:31359454-31359103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 30

               
               
               Conread position:118-426
               
               
               Cow position:chr24:6912224-6912527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):25, 233

               
               
               Conread position:137-424
               
               
               Cow position:chr24:19736221-19736502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:140-422
               
               
               Cow position:chr24:23186804-23187089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 232

               
               
               Conread position:144-380
               
               
               Cow position:chr24:14457618-14457853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):71, 23

               
               
               Conread position:144-535
               
               
               Cow position:chr24:5754943-5754560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 52

               
               
               Conread position:145-307
               
               
               Cow position:chr24:28689777-28689609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:153-535
               
               
               Cow position:chr24:201541-201914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:167-375
               
               
               Cow position:chr24:39791626-39791414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:167-398
               
               
               Cow position:chr24:24662046-24662277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):50, 146

               
               
               Conread position:167-533
               
               
               Cow position:chr24:27748725-27748375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 122

               
               
               Conread position:167-534
               
               
               Cow position:chr24:29171046-29170685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):48, 57

               
               
               Conread position:168-445
               
               
               Cow position:chr24:30897454-30897733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:168-503
               
               
               Cow position:chr24:2095798-2096137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 230

               
               
               Conread position:169-315
               
               
               Cow position:chr24:42639169-42639313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:169-348
               
               
               Cow position:chr24:30308475-30308653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:169-349
               
               
               Cow position:chr24:20807617-20807438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 52

               
               
               Conread position:169-493
               
               
               Cow position:chr24:33221849-33222178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 276

               
               
               Conread position:169-504
               
               
               Cow position:chr24:27824545-27824215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:169-533
               
               
               Cow position:chr24:15246560-15246915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 167

               
               
               Conread position:169-535
               
               
               Cow position:chr24:28319126-28319483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 168

               
               
               Conread position:171-402
               
               
               Cow position:chr24:43967423-43967653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):126, 40

               
               
               Conread position:171-501
               
               
               Cow position:chr24:31324365-31324034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:171-533
               
               
               Cow position:chr24:29673602-29673240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:171-535
               
               
               Cow position:chr24:18331801-18331455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):37, 129

               
               
               Conread position:172-461
               
               
               Cow position:chr24:15373485-15373198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 139

               
               
               Conread position:177-504
               
               
               Cow position:chr24:26732524-26732198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):169, 54

               
               
               Conread position:177-535
               
               
               Cow position:chr24:27290945-27290596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:179-437
               
               
               Cow position:chr24:19261305-19261547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:190-334
               
               
               Cow position:chr24:44145640-44145497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:203-535
               
               
               Cow position:chr24:6150072-6149749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:206-445
               
               
               Cow position:chr24:14171644-14171889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:213-533
               
               
               Cow position:chr24:20024651-20024328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 88

               
               
               Conread position:216-504
               
               
               Cow position:chr24:40673386-40673676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):39, 249

               
               
               Conread position:217-504
               
               
               Cow position:chr24:6487950-6487671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:218-475
               
               
               Cow position:chr24:39833482-39833736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 80

               
               
               Conread position:234-340
               
               
               Cow position:chr24:50408-50514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:259-528
               
               
               Cow position:chr24:17363656-17363919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:27-534
               
               
               Cow position:chr25:30278951-30279466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 55

               
               
               Conread position:36-327
               
               
               Cow position:chr25:7726900-7726612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:41-292
               
               
               Cow position:chr25:23519809-23520047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):161, 24

               
               
               Conread position:44-378
               
               
               Cow position:chr25:9316253-9315915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:46-530
               
               
               Cow position:chr25:10748274-10748756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:310
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:47-535
               
               
               Cow position:chr25:33663686-33664155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 5

               
               
               Conread position:49-268
               
               
               Cow position:chr25:14102892-14102671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:49-320
               
               
               Cow position:chr25:9025349-9025080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:51-252
               
               
               Cow position:chr25:7684675-7684877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:51-290
               
               
               Cow position:chr25:30624843-30625100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:52-299
               
               
               Cow position:chr25:28667827-28668076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:52-444
               
               
               Cow position:chr25:26136600-26136996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:54-316
               
               
               Cow position:chr25:4157027-4157278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:54-348
               
               
               Cow position:chr25:8345780-8346076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 142

               
               
               Conread position:54-402
               
               
               Cow position:chr25:12509804-12510139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:54-428
               
               
               Cow position:chr25:11065921-11066304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:55-264
               
               
               Cow position:chr25:22565746-22565947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:55-276
               
               
               Cow position:chr25:8347877-8347649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:55-285
               
               
               Cow position:chr25:20203125-20202901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 7

               
               
               Conread position:55-296
               
               
               Cow position:chr25:36873118-36873356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:55-311
               
               
               Cow position:chr25:13826652-13826399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):15, 102

               
               
               Conread position:55-343
               
               
               Cow position:chr25:36073785-36074069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):243, 54

               
               
               Conread position:55-359
               
               
               Cow position:chr25:12305496-12305189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:55-445
               
               
               Cow position:chr25:7750669-7750281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:55-460
               
               
               Cow position:chr25:22179133-22178733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:55-533
               
               
               Cow position:chr25:11957023-11956570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 100

               
               
               Conread position:55-534
               
               
               Cow position:chr25:6463804-6464287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 180

               
               
               Conread position:55-535
               
               
               Cow position:chr25:3993000-3992531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 92

               
               
               Conread position:55-535
               
               
               Cow position:chr25:24573276-24572814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 27

               
               
               Conread position:56-237
               
               
               Cow position:chr25:10332819-10332636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:56-256
               
               
               Cow position:chr25:22373268-22373473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 149

               
               
               Conread position:56-336
               
               
               Cow position:chr25:7551150-7551423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:56-456
               
               
               Cow position:chr25:30620021-30620436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:56-533
               
               
               Cow position:chr25:20349097-20348601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 144

               
               
               Conread position:57-267
               
               
               Cow position:chr25:15573597-15573394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:57-346
               
               
               Cow position:chr25:33555822-33555536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:57-535
               
               
               Cow position:chr25:22315420-22314942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:58-317
               
               
               Cow position:chr25:22348242-22348507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:59-358
               
               
               Cow position:chr25:13621145-13621445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:60-340
               
               
               Cow position:chr25:10610905-10611188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 40

               
               
               Conread position:60-400
               
               
               Cow position:chr25:17119958-17119613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):18, 5

               
               
               Conread position:60-530
               
               
               Cow position:chr25:11585743-11585264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:61-272
               
               
               Cow position:chr25:1802824-1802608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 83

               
               
               Conread position:61-352
               
               
               Cow position:chr25:11276762-11276474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:61-432
               
               
               Cow position:chr25:30852977-30852597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:62-321
               
               
               Cow position:chr25:28597389-28597658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 70

               
               
               Conread position:62-355
               
               
               Cow position:chr25:432839-433132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):154, 17

               
               
               Conread position:62-370
               
               
               Cow position:chr25:10949354-10949682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):56, 49

               
               
               Conread position:62-391
               
               
               Cow position:chr25:11432736-11433072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:62-515
               
               
               Cow position:chr25:13380387-13380854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:62-516
               
               
               Cow position:chr25:26338672-26338206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:62-528
               
               
               Cow position:chr25:33457937-33457454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 38

               
               
               Conread position:63-376
               
               
               Cow position:chr25:24207205-24207524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:63-531
               
               
               Cow position:chr25:2415009-2414578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:326
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:64-265
               
               
               Cow position:chr25:15349699-15349897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:64-417
               
               
               Cow position:chr25:6292778-6292422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:64-461
               
               
               Cow position:chr25:40904617-40905018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):42, 133

               
               
               Conread position:65-284
               
               
               Cow position:chr25:5808154-5807933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:65-305
               
               
               Cow position:chr25:13223107-13222868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:65-412
               
               
               Cow position:chr25:20523028-20523370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:65-461
               
               
               Cow position:chr25:17914991-17914591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:65-535
               
               
               Cow position:chr25:15273873-15273431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:65-535
               
               
               Cow position:chr25:16921583-16922051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:65-535
               
               
               Cow position:chr25:23053770-23053297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:65-535
               
               
               Cow position:chr25:35348116-35347646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 97

               
               
               Conread position:66-304
               
               
               Cow position:chr25:5637181-5637414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):149, 70

               
               
               Conread position:66-347
               
               
               Cow position:chr25:41130436-41130155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:66-397
               
               
               Cow position:chr25:4489107-4488795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:66-535
               
               
               Cow position:chr25:19679558-19679083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:66-535
               
               
               Cow position:chr25:21191686-21191228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:67-357
               
               
               Cow position:chr25:37331838-37332130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):44, 77

               
               
               Conread position:67-398
               
               
               Cow position:chr25:20157086-20157424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):44, 127

               
               
               Conread position:67-453
               
               
               Cow position:chr25:26524170-26523783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 191

               
               
               Conread position:68-304
               
               
               Cow position:chr25:17919183-17918943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:68-448
               
               
               Cow position:chr25:11051730-11051354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 75

               
               
               Conread position:69-268
               
               
               Cow position:chr25:11060343-11060137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):17, 115

               
               
               Conread position:71-311
               
               
               Cow position:chr25:18929003-18929230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:71-325
               
               
               Cow position:chr25:27595762-27595513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):146, 17

               
               
               Conread position:71-339
               
               
               Cow position:chr25:13768161-13767904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):241, 62

               
               
               Conread position:71-340
               
               
               Cow position:chr25:12195017-12195283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 134

               
               
               Conread position:71-398
               
               
               Cow position:chr25:9843384-9843051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 330

               
               
               Conread position:71-435
               
               
               Cow position:chr25:26679430-26679065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:71-533
               
               
               Cow position:chr25:21192738-21193200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:72-436
               
               
               Cow position:chr25:41150762-41151124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:72-480
               
               
               Cow position:chr25:13272771-13272366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:73-268
               
               
               Cow position:chr25:24115114-24115311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:73-312
               
               
               Cow position:chr25:18288569-18288806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:73-341
               
               
               Cow position:chr25:1840522-1840254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:73-494
               
               
               Cow position:chr25:7008124-7007699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 291

               
               
               Conread position:73-498
               
               
               Cow position:chr25:19478891-19478467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 280

               
               
               Conread position:73-530
               
               
               Cow position:chr25:18720927-18721358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:73-535
               
               
               Cow position:chr25:33550712-33550247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:74-263
               
               
               Cow position:chr25:22734206-22734018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:74-431
               
               
               Cow position:chr25:7380637-7380999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:74-528
               
               
               Cow position:chr25:24669252-24669682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:75-286
               
               
               Cow position:chr25:9573936-9574143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:75-385
               
               
               Cow position:chr25:22317883-22317568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:75-400
               
               
               Cow position:chr25:18201730-18202054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):106, 110

               
               
               Conread position:75-442
               
               
               Cow position:chr25:8485284-8485667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:75-527
               
               
               Cow position:chr25:36746249-36746696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:75-530
               
               
               Cow position:chr25:5846606-5847060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:76-305
               
               
               Cow position:chr25:23473634-23473410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:79-359
               
               
               Cow position:chr25:7799747-7799466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 222

               
               
               Conread position:79-402
               
               
               Cow position:chr25:36835237-36835554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:79-534
               
               
               Cow position:chr25:23828935-23829375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 84

               
               
               Conread position:81-225
               
               
               Cow position:chr25:13470518-13470664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 137

               
               
               Conread position:81-353
               
               
               Cow position:chr25:35052425-35052700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:81-371
               
               
               Cow position:chr25:8102861-8102569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 29

               
               
               Conread position:81-397
               
               
               Cow position:chr25:6928323-6928633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:81-453
               
               
               Cow position:chr25:32277423-32277780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:82-247
               
               
               Cow position:chr25:10856524-10856688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:82-535
               
               
               Cow position:chr25:9989910-9990349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:82-535
               
               
               Cow position:chr25:19130046-19129594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:83-493
               
               
               Cow position:chr25:2624985-2624588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 63

               
               
               Conread position:85-529
               
               
               Cow position:chr25:16318961-16319385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 37

               
               
               Conread position:88-340
               
               
               Cow position:chr25:26306017-26306272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):23, 83

               
               
               Conread position:88-401
               
               
               Cow position:chr25:22756798-22756480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:88-418
               
               
               Cow position:chr25:7673493-7673134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 234

               
               
               Conread position:89-316
               
               
               Cow position:chr25:35339005-35339232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:89-392
               
               
               Cow position:chr25:19363875-19364181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:89-440
               
               
               Cow position:chr25:13443222-13443571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):22, 199

               
               
               Conread position:89-528
               
               
               Cow position:chr25:20023209-20023649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:91-447
               
               
               Cow position:chr25:23244821-23245184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:92-535
               
               
               Cow position:chr25:11661648-11662078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 51

               
               
               Conread position:94-312
               
               
               Cow position:chr25:9107353-9107561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):122, 58

               
               
               Conread position:96-535
               
               
               Cow position:chr25:6238300-6237864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):106, 66

               
               
               Conread position:100-535
               
               
               Cow position:chr25:17566762-17566328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:102-535
               
               
               Cow position:chr25:15715041-15714622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 50

               
               
               Conread position:103-392
               
               
               Cow position:chr25:36872529-36872242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:104-454
               
               
               Cow position:chr25:17342628-17342271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):77, 86

               
               
               Conread position:104-525
               
               
               Cow position:chr25:12293577-12294000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:286
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:109-518
               
               
               Cow position:chr25:41132204-41132597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):93, 26

               
               
               Conread position:112-530
               
               
               Cow position:chr25:788416-788015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 29

               
               
               Conread position:112-535
               
               
               Cow position:chr25:16867404-16866973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 286

               
               
               Conread position:133-299
               
               
               Cow position:chr25:15463726-15463562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:141-348
               
               
               Cow position:chr25:23505185-23504973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:143-340
               
               
               Cow position:chr25:7012554-7012362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:143-353
               
               
               Cow position:chr25:22261184-22261378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):208, 70

               
               
               Conread position:145-513
               
               
               Cow position:chr25:61777-61421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:153-535
               
               
               Cow position:chr25:13569053-13569426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:160-535
               
               
               Cow position:chr25:12116885-12117245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 177

               
               
               Conread position:161-358
               
               
               Cow position:chr25:14809387-14809196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):12, 139

               
               
               Conread position:166-517
               
               
               Cow position:chr25:12840610-12840958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:167-426
               
               
               Cow position:chr25:8961877-8961620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:167-504
               
               
               Cow position:chr25:34170053-34169727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 71

               
               
               Conread position:168-317
               
               
               Cow position:chr25:18810449-18810301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:168-457
               
               
               Cow position:chr25:4681332-4681048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:168-534
               
               
               Cow position:chr25:11436701-11437060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 202

               
               
               Conread position:169-277
               
               
               Cow position:chr25:34967404-34967513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-280
               
               
               Cow position:chr25:23998819-23998931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-348
               
               
               Cow position:chr25:7379042-7379224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 165

               
               
               Conread position:169-348
               
               
               Cow position:chr25:36021427-36021249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:169-380
               
               
               Cow position:chr25:22341630-22341418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):178, 47

               
               
               Conread position:169-402
               
               
               Cow position:chr25:14157730-14157492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:169-423
               
               
               Cow position:chr25:24844217-24843961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):155, 26

               
               
               Conread position:169-504
               
               
               Cow position:chr25:6961048-6961377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 154

               
               
               Conread position:169-518
               
               
               Cow position:chr25:35826176-35826517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 174

               
               
               Conread position:169-533
               
               
               Cow position:chr25:15254243-15254588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 130

               
               
               Conread position:169-535
               
               
               Cow position:chr25:17975273-17975626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 127

               
               
               Conread position:169-535
               
               
               Cow position:chr25:22531386-22531028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 89

               
               
               Conread position:169-535
               
               
               Cow position:chr25:25051272-25051643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 254

               
               
               Conread position:171-379
               
               
               Cow position:chr25:36555586-36555796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 118

               
               
               Conread position:171-534
               
               
               Cow position:chr25:7581324-7581685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 126

               
               
               Conread position:172-339
               
               
               Cow position:chr25:6133989-6134157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:172-535
               
               
               Cow position:chr25:36036677-36037039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 169

               
               
               Conread position:180-535
               
               
               Cow position:chr25:6227129-6226782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:181-535
               
               
               Cow position:chr25:5407835-5407491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):35, 186

               
               
               Conread position:184-293
               
               
               Cow position:chr25:14211719-14211609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:190-534
               
               
               Cow position:chr25:14118175-14117851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):27, 32

               
               
               Conread position:190-535
               
               
               Cow position:chr25:11829839-11830155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:256
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):26, 66

               
               
               Conread position:196-514
               
               
               Cow position:chr25:8576772-8576456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:206-411
               
               
               Cow position:chr25:24052034-24051824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:206-527
               
               
               Cow position:chr25:18988458-18988126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 98

               
               
               Conread position:210-505
               
               
               Cow position:chr25:10217985-10218279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 99

               
               
               Conread position:212-461
               
               
               Cow position:chr25:20133253-20133504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):136, 89

               
               
               Conread position:214-393
               
               
               Cow position:chr25:26642646-26642462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:214-535
               
               
               Cow position:chr25:5539481-5539163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:218-530
               
               
               Cow position:chr25:5836902-5837220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 156

               
               
               Conread position:26-535
               
               
               Cow position:chr26:20260847-20260350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:344
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:38-350
               
               
               Cow position:chr26:32830336-32830026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:39-535
               
               
               Cow position:chr26:9492166-9491688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 21

               
               
               Conread position:42-382
               
               
               Cow position:chr26:677710-678070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:42-535
               
               
               Cow position:chr26:34314929-34314437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:343
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):167, 93

               
               
               Conread position:45-295
               
               
               Cow position:chr26:107289-107022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:45-295
               
               
               Cow position:chr26:11874977-11875224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):6, 38

               
               
               Conread position:49-535
               
               
               Cow position:chr26:8811372-8810892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:50-454
               
               
               Cow position:chr26:22892205-22892608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 96

               
               
               Conread position:50-535
               
               
               Cow position:chr26:4363539-4363065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:323
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:52-402
               
               
               Cow position:chr26:23671659-23671302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 40

               
               
               Conread position:53-264
               
               
               Cow position:chr26:3192207-3192417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:54-284
               
               
               Cow position:chr26:5407220-5406987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:54-319
               
               
               Cow position:chr26:6487555-6487823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:54-533
               
               
               Cow position:chr26:6714062-6714521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:54-533
               
               
               Cow position:chr26:33201831-33202296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 91

               
               
               Conread position:54-535
               
               
               Cow position:chr26:3758025-3757550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:318
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 115

               
               
               Conread position:54-535
               
               
               Cow position:chr26:7148064-7148538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:55-261
               
               
               Cow position:chr26:12807070-12807269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-272
               
               
               Cow position:chr26:33037987-33038203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:55-418
               
               
               Cow position:chr26:33253079-33253448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):52, 108

               
               
               Conread position:55-504
               
               
               Cow position:chr26:30127759-30128227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:55-515
               
               
               Cow position:chr26:23141867-23142317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-527
               
               
               Cow position:chr26:21243323-21242872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:56-501
               
               
               Cow position:chr26:10764448-10764014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:57-314
               
               
               Cow position:chr26:34610952-34611204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:60-360
               
               
               Cow position:chr26:19591706-19591412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:60-497
               
               
               Cow position:chr26:19446369-19445936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:60-527
               
               
               Cow position:chr26:20291461-20291914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:61-383
               
               
               Cow position:chr26:6515066-6514750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):13, 87

               
               
               Conread position:61-462
               
               
               Cow position:chr26:14175524-14175110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:62-316
               
               
               Cow position:chr26:5666270-5666024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:62-348
               
               
               Cow position:chr26:22033709-22033427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:62-433
               
               
               Cow position:chr26:9535745-9535376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:62-535
               
               
               Cow position:chr26:6037191-6037680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 171

               
               
               Conread position:63-535
               
               
               Cow position:chr26:16550219-16549740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:64-533
               
               
               Cow position:chr26:12144890-12145342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:65-235
               
               
               Cow position:chr26:21320175-21320003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 83

               
               
               Conread position:65-426
               
               
               Cow position:chr26:33074269-33074634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:65-438
               
               
               Cow position:chr26:28251381-28251000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 63

               
               
               Conread position:66-339
               
               
               Cow position:chr26:12940634-12940359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):44, 239

               
               
               Conread position:66-406
               
               
               Cow position:chr26:24240906-24240561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 38

               
               
               Conread position:66-533
               
               
               Cow position:chr26:32670276-32670728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 44

               
               
               Conread position:68-266
               
               
               Cow position:chr26:10700677-10700876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:68-325
               
               
               Cow position:chr26:7314853-7314586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:69-312
               
               
               Cow position:chr26:1328642-1328877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):147, 35

               
               
               Conread position:69-506
               
               
               Cow position:chr26:25526471-25526036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 78

               
               
               Conread position:69-512
               
               
               Cow position:chr26:33856971-33857414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 99

               
               
               Conread position:69-534
               
               
               Cow position:chr26:29333311-29332861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 43

               
               
               Conread position:71-336
               
               
               Cow position:chr26:19636511-19636247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:71-371
               
               
               Cow position:chr26:35686615-35686318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:71-535
               
               
               Cow position:chr26:4584991-4585450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:72-375
               
               
               Cow position:chr26:23925064-23924764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:73-256
               
               
               Cow position:chr26:13705549-13705741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:73-256
               
               
               Cow position:chr26:29900841-29901025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:73-379
               
               
               Cow position:chr26:32815569-32815880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:73-388
               
               
               Cow position:chr26:7687023-7687337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:73-447
               
               
               Cow position:chr26:12964462-12964852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 180

               
               
               Conread position:74-306
               
               
               Cow position:chr26:33242127-33241874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):37, 9

               
               
               Conread position:74-340
               
               
               Cow position:chr26:24453691-24453953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:74-397
               
               
               Cow position:chr26:32566228-32565910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:74-406
               
               
               Cow position:chr26:34724656-34724989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:74-535
               
               
               Cow position:chr26:26887919-26888374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:75-272
               
               
               Cow position:chr26:15132858-15132657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:75-354
               
               
               Cow position:chr26:218239-218520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:75-461
               
               
               Cow position:chr26:35449273-35448893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):136, 72

               
               
               Conread position:75-496
               
               
               Cow position:chr26:5102605-5103022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:280
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:76-437
               
               
               Cow position:chr26:20770066-20769709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 8

               
               
               Conread position:76-535
               
               
               Cow position:chr26:3707016-3706560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 123

               
               
               Conread position:77-530
               
               
               Cow position:chr26:33112171-33112619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:79-525
               
               
               Cow position:chr26:13802322-13801881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:79-530
               
               
               Cow position:chr26:32897666-32898106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:81-345
               
               
               Cow position:chr26:28423497-28423234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:81-461
               
               
               Cow position:chr26:4167138-4167526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):27, 97

               
               
               Conread position:82-313
               
               
               Cow position:chr26:29663943-29664177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 222

               
               
               Conread position:82-337
               
               
               Cow position:chr26:5836607-5836864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:84-348
               
               
               Cow position:chr26:33392607-33392337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:85-290
               
               
               Cow position:chr26:31888937-31888735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:87-436
               
               
               Cow position:chr26:7212358-7212711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 265

               
               
               Conread position:87-533
               
               
               Cow position:chr26:16784030-16783584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 77

               
               
               Conread position:88-453
               
               
               Cow position:chr26:22132012-22131636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):26, 105

               
               
               Conread position:89-533
               
               
               Cow position:chr26:14174507-14174058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:91-434
               
               
               Cow position:chr26:33736357-33736693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 52

               
               
               Conread position:92-532
               
               
               Cow position:chr26:27491295-27491740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 151

               
               
               Conread position:94-240
               
               
               Cow position:chr26:29897382-29897239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):121, 42

               
               
               Conread position:104-418
               
               
               Cow position:chr26:34661034-34660717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):97, 49

               
               
               Conread position:109-436
               
               
               Cow position:chr26:31903350-31903019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):73, 58

               
               
               Conread position:119-508
               
               
               Cow position:chr26:24629906-24629532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 71

               
               
               Conread position:128-535
               
               
               Cow position:chr26:32652571-32652963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:133-535
               
               
               Cow position:chr26:13020985-13021389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 166

               
               
               Conread position:143-382
               
               
               Cow position:chr26:6865173-6864925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:159-462
               
               
               Cow position:chr26:23315908-23315595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:160-440
               
               
               Cow position:chr26:8643074-8642797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:167-515
               
               
               Cow position:chr26:21636912-21637256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:168-533
               
               
               Cow position:chr26:8699922-8700288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 136

               
               
               Conread position:168-534
               
               
               Cow position:chr26:21859949-21859585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 120

               
               
               Conread position:168-535
               
               
               Cow position:chr26:16604411-16604044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):132, 203

               
               
               Conread position:169-317
               
               
               Cow position:chr26:34154258-34154108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-519
               
               
               Cow position:chr26:31605530-31605184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 137

               
               
               Conread position:170-383
               
               
               Cow position:chr26:14481431-14481640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):45, 119

               
               
               Conread position:171-526
               
               
               Cow position:chr26:19774177-19774534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:171-535
               
               
               Cow position:chr26:33566922-33567281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 63

               
               
               Conread position:172-299
               
               
               Cow position:chr26:17652081-17651953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:172-400
               
               
               Cow position:chr26:31556811-31557044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:172-418
               
               
               Cow position:chr26:22152348-22152098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:177-488
               
               
               Cow position:chr26:17148820-17148508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:197-470
               
               
               Cow position:chr26:25299696-25299422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):5, 102

               
               
               Conread position:197-535
               
               
               Cow position:chr26:35704484-35704145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 150

               
               
               Conread position:204-456
               
               
               Cow position:chr26:16179651-16179398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:205-451
               
               
               Cow position:chr26:14578415-14578166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):10, 99

               
               
               Conread position:207-522
               
               
               Cow position:chr26:21992188-21991885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:210-530
               
               
               Cow position:chr26:32683199-32682879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):7, 135

               
               
               Conread position:238-516
               
               
               Cow position:chr26:5307197-5306913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 235

               
               
               Conread position:244-514
               
               
               Cow position:chr26:2345599-2345861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):65, 53

               
               
               Conread position:42-375
               
               
               Cow position:chr27:31151109-31151434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):69, 8

               
               
               Conread position:46-361
               
               
               Cow position:chr27:29593904-29593585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):37, 202

               
               
               Conread position:47-221
               
               
               Cow position:chr27:2934234-2934406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 49

               
               
               Conread position:48-268
               
               
               Cow position:chr27:2949585-2949378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:49-392
               
               
               Cow position:chr27:16088521-16088883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:49-396
               
               
               Cow position:chr27:6924816-6925167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:50-380
               
               
               Cow position:chr27:23560300-23559969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:50-524
               
               
               Cow position:chr27:22547658-22547204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 96

               
               
               Conread position:51-305
               
               
               Cow position:chr27:31386896-31386644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:52-286
               
               
               Cow position:chr27:26323173-26323415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):13, 149

               
               
               Conread position:52-535
               
               
               Cow position:chr27:11435590-11435120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:53-486
               
               
               Cow position:chr27:4944775-4944365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:55-235
               
               
               Cow position:chr27:22748058-22748244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:55-266
               
               
               Cow position:chr27:4398751-4398544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 86

               
               
               Conread position:55-273
               
               
               Cow position:chr27:10581269-10581483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 89

               
               
               Conread position:55-299
               
               
               Cow position:chr27:10404383-10404136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:55-312
               
               
               Cow position:chr27:31169372-31169117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 102

               
               
               Conread position:55-326
               
               
               Cow position:chr27:20485780-20486065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 171

               
               
               Conread position:55-382
               
               
               Cow position:chr27:27405333-27405005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:55-520
               
               
               Cow position:chr27:13875464-13875930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 109

               
               
               Conread position:55-525
               
               
               Cow position:chr27:20869946-20869497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:317
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:55-529
               
               
               Cow position:chr27:26434077-26433605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:55-534
               
               
               Cow position:chr27:22220283-22220766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 340

               
               
               Conread position:55-535
               
               
               Cow position:chr27:18507380-18507845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 142

               
               
               Conread position:55-535
               
               
               Cow position:chr27:22035636-22035160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 100

               
               
               Conread position:55-535
               
               
               Cow position:chr27:26509421-26508948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 158

               
               
               Conread position:56-239
               
               
               Cow position:chr27:22583481-22583667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:56-311
               
               
               Cow position:chr27:24303675-24303936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 143

               
               
               Conread position:56-330
               
               
               Cow position:chr27:26437381-26437108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:56-379
               
               
               Cow position:chr27:20514563-20514882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):159, 25

               
               
               Conread position:57-246
               
               
               Cow position:chr27:31183308-31183503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:57-272
               
               
               Cow position:chr27:11133824-11134039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:57-334
               
               
               Cow position:chr27:17933661-17933942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 8

               
               
               Conread position:57-455
               
               
               Cow position:chr27:19500498-19500095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:58-408
               
               
               Cow position:chr27:15865345-15865696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:60-529
               
               
               Cow position:chr27:27856080-27856539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 5

               
               
               Conread position:61-457
               
               
               Cow position:chr27:30872314-30871920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:61-479
               
               
               Cow position:chr27:19896507-19896913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):114, 80

               
               
               Conread position:62-285
               
               
               Cow position:chr27:3518246-3518471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:62-332
               
               
               Cow position:chr27:11982907-11982636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:62-338
               
               
               Cow position:chr27:31210292-31210566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:62-424
               
               
               Cow position:chr27:23594064-23594422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:62-430
               
               
               Cow position:chr27:26226546-26226178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:62-432
               
               
               Cow position:chr27:29185101-29184725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:62-530
               
               
               Cow position:chr27:16284232-16284680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:62-530
               
               
               Cow position:chr27:27632853-27632401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 72

               
               
               Conread position:62-533
               
               
               Cow position:chr27:17397709-17397238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:62-535
               
               
               Cow position:chr27:10582115-10582576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr27:20828962-20828494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 79

               
               
               Conread position:62-535
               
               
               Cow position:chr27:27020353-27019887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:62-535
               
               
               Cow position:chr27:30890043-30890500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 90

               
               
               Conread position:63-279
               
               
               Cow position:chr27:19576580-19576363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:63-376
               
               
               Cow position:chr27:24240094-24240404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 178

               
               
               Conread position:63-482
               
               
               Cow position:chr27:29431220-29431620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:64-267
               
               
               Cow position:chr27:11323071-11323278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 129

               
               
               Conread position:64-332
               
               
               Cow position:chr27:19508756-19509027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):47, 107

               
               
               Conread position:64-338
               
               
               Cow position:chr27:236996-237288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):47, 171

               
               
               Conread position:64-535
               
               
               Cow position:chr27:10307559-10307082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 89

               
               
               Conread position:65-318
               
               
               Cow position:chr27:29614789-29615046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:65-329
               
               
               Cow position:chr27:31004687-31004951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):150, 44

               
               
               Conread position:65-366
               
               
               Cow position:chr27:20628803-20629108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):14, 233

               
               
               Conread position:65-534
               
               
               Cow position:chr27:31231334-31230882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 90

               
               
               Conread position:65-535
               
               
               Cow position:chr27:14670635-14670169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:65-535
               
               
               Cow position:chr27:18543734-18544211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:66-332
               
               
               Cow position:chr27:28478333-28478594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:66-334
               
               
               Cow position:chr27:26617160-26617414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):10, 79

               
               
               Conread position:66-494
               
               
               Cow position:chr27:28496624-28496203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:66-530
               
               
               Cow position:chr27:19387764-19388227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:66-533
               
               
               Cow position:chr27:7851135-7851583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 134

               
               
               Conread position:66-533
               
               
               Cow position:chr27:15925090-15925546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:324
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:67-240
               
               
               Cow position:chr27:11528676-11528852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:67-287
               
               
               Cow position:chr27:24223703-24223922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):144, 15

               
               
               Conread position:67-304
               
               
               Cow position:chr27:10598734-10598974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 127

               
               
               Conread position:67-363
               
               
               Cow position:chr27:23484962-23485258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:67-487
               
               
               Cow position:chr27:7212984-7212548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 328

               
               
               Conread position:67-504
               
               
               Cow position:chr27:6787699-6788140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:294
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:67-521
               
               
               Cow position:chr27:18031321-18030860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-533
               
               
               Cow position:chr27:6541384-6541836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:68-343
               
               
               Cow position:chr27:12709990-12710265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:68-355
               
               
               Cow position:chr27:12425037-12425325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:68-494
               
               
               Cow position:chr27:15409277-15408872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:69-457
               
               
               Cow position:chr27:7346419-7346800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:69-535
               
               
               Cow position:chr27:16786583-16787040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:71-413
               
               
               Cow position:chr27:23510726-23511085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:71-529
               
               
               Cow position:chr27:29494147-29493710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:71-535
               
               
               Cow position:chr27:23918283-23917844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:329
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:72-514
               
               
               Cow position:chr27:19589235-19589670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:297
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):145, 81

               
               
               Conread position:72-530
               
               
               Cow position:chr27:15669022-15668559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:73-229
               
               
               Cow position:chr27:28062441-28062288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:73-251
               
               
               Cow position:chr27:27606541-27606364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 80

               
               
               Conread position:73-263
               
               
               Cow position:chr27:27529061-27528876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):120, 39

               
               
               Conread position:73-396
               
               
               Cow position:chr27:24440464-24440150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):144, 36

               
               
               Conread position:73-400
               
               
               Cow position:chr27:15378729-15378396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):10, 173

               
               
               Conread position:73-411
               
               
               Cow position:chr27:591018-590671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):14, 233

               
               
               Conread position:73-456
               
               
               Cow position:chr27:426723-427111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:74-305
               
               
               Cow position:chr27:6106461-6106684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):141, 77

               
               
               Conread position:74-514
               
               
               Cow position:chr27:16705007-16705438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:74-524
               
               
               Cow position:chr27:21669353-21668923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:74-535
               
               
               Cow position:chr27:7412148-7412596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:74-535
               
               
               Cow position:chr27:26643457-26643886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 56

               
               
               Conread position:74-535
               
               
               Cow position:chr27:27389273-27388815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 307

               
               
               Conread position:75-355
               
               
               Cow position:chr27:20719040-20719328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:75-363
               
               
               Cow position:chr27:26852827-26852547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:75-429
               
               
               Cow position:chr27:11151427-11151787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:75-472
               
               
               Cow position:chr27:22513926-22513525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:75-530
               
               
               Cow position:chr27:15870914-15871370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:75-535
               
               
               Cow position:chr27:10979615-10980077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 248

               
               
               Conread position:79-281
               
               
               Cow position:chr27:17102659-17102858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:79-535
               
               
               Cow position:chr27:15204477-15204018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:306
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):32, 126

               
               
               Conread position:81-318
               
               
               Cow position:chr27:23994654-23994421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 127

               
               
               Conread position:81-402
               
               
               Cow position:chr27:18646388-18646061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):30, 73

               
               
               Conread position:81-534
               
               
               Cow position:chr27:299613-299171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:82-303
               
               
               Cow position:chr27:15003217-15002994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:83-305
               
               
               Cow position:chr27:6319685-6319905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:85-283
               
               
               Cow position:chr27:24693183-24693377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 61

               
               
               Conread position:85-478
               
               
               Cow position:chr27:20517417-20517816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:85-533
               
               
               Cow position:chr27:26865343-26864908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:87-535
               
               
               Cow position:chr27:6499825-6500278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 106

               
               
               Conread position:88-533
               
               
               Cow position:chr27:22550002-22549571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:89-430
               
               
               Cow position:chr27:20637289-20636957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:89-441
               
               
               Cow position:chr27:26490136-26489782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:89-519
               
               
               Cow position:chr27:23554560-23554122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 114

               
               
               Conread position:89-533
               
               
               Cow position:chr27:435001-435447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 98

               
               
               Conread position:91-268
               
               
               Cow position:chr27:26504075-26504251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:91-365
               
               
               Cow position:chr27:23108131-23107854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:91-428
               
               
               Cow position:chr27:27695004-27694662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 152

               
               
               Conread position:91-512
               
               
               Cow position:chr27:18739145-18739577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 102

               
               
               Conread position:91-527
               
               
               Cow position:chr27:19685939-19685509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 19

               
               
               Conread position:93-457
               
               
               Cow position:chr27:23890706-23891077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 210

               
               
               Conread position:94-535
               
               
               Cow position:chr27:26238798-26239237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:104-377
               
               
               Cow position:chr27:1190689-1190416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:104-530
               
               
               Cow position:chr27:29977035-29977466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):37, 54

               
               
               Conread position:112-416
               
               
               Cow position:chr27:20481561-20481279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 46

               
               
               Conread position:118-436
               
               
               Cow position:chr27:26506544-26506838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:133-445
               
               
               Cow position:chr27:20758216-20757920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):284, 69

               
               
               Conread position:136-461
               
               
               Cow position:chr27:28271334-28271003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):81, 162

               
               
               Conread position:141-286
               
               
               Cow position:chr27:11466644-11466498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:143-333
               
               
               Cow position:chr27:22348313-22348500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 100

               
               
               Conread position:155-535
               
               
               Cow position:chr27:20795628-20795997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 80

               
               
               Conread position:157-333
               
               
               Cow position:chr27:23942984-23943154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 141

               
               
               Conread position:157-422
               
               
               Cow position:chr27:29504812-29504543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):59, 230

               
               
               Conread position:160-535
               
               
               Cow position:chr27:23882525-23882161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 8

               
               
               Conread position:166-533
               
               
               Cow position:chr27:24014893-24014530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 169

               
               
               Conread position:167-379
               
               
               Cow position:chr27:6302620-6302398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):48, 55

               
               
               Conread position:167-381
               
               
               Cow position:chr27:31017978-31017771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:167-387
               
               
               Cow position:chr27:25721102-25720872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 62

               
               
               Conread position:167-445
               
               
               Cow position:chr27:16589855-16589589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 131

               
               
               Conread position:167-530
               
               
               Cow position:chr27:4819866-4819504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):15, 212

               
               
               Conread position:167-530
               
               
               Cow position:chr27:25411662-25411311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 75

               
               
               Conread position:167-535
               
               
               Cow position:chr27:4672859-4673234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 270

               
               
               Conread position:167-535
               
               
               Cow position:chr27:23483074-23483436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 70

               
               
               Conread position:168-533
               
               
               Cow position:chr27:1122880-1123232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:168-535
               
               
               Cow position:chr27:4835759-4835394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 178

               
               
               Conread position:168-535
               
               
               Cow position:chr27:26441199-26440845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:168-535
               
               
               Cow position:chr27:27050059-27049699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):138, 22

               
               
               Conread position:169-308
               
               
               Cow position:chr27:30489561-30489421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-412
               
               
               Cow position:chr27:20092985-20092744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):48, 181

               
               
               Conread position:169-445
               
               
               Cow position:chr27:29312825-29312546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):45, 225

               
               
               Conread position:169-447
               
               
               Cow position:chr27:31148611-31148890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:169-535
               
               
               Cow position:chr27:24321039-24321401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 72

               
               
               Conread position:170-535
               
               
               Cow position:chr27:30354494-30354132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 288

               
               
               Conread position:171-430
               
               
               Cow position:chr27:24371094-24371347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):152, 76

               
               
               Conread position:171-432
               
               
               Cow position:chr27:21213639-21213885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:171-530
               
               
               Cow position:chr27:20641482-20641138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:172-535
               
               
               Cow position:chr27:20553584-20553930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:177-304
               
               
               Cow position:chr27:788940-788812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:177-457
               
               
               Cow position:chr27:22423373-22423634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 121

               
               
               Conread position:184-535
               
               
               Cow position:chr27:4813019-4812664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 268

               
               
               Conread position:190-380
               
               
               Cow position:chr27:8405952-8405763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 107

               
               
               Conread position:190-432
               
               
               Cow position:chr27:16625770-16626010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:190-497
               
               
               Cow position:chr27:6159851-6160156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:203-533
               
               
               Cow position:chr27:23472142-23472469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:207-502
               
               
               Cow position:chr27:3784-4067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 63

               
               
               Conread position:207-527
               
               
               Cow position:chr27:4829924-4829603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 166

               
               
               Conread position:210-434
               
               
               Cow position:chr27:30389407-30389180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 191

               
               
               Conread position:213-457
               
               
               Cow position:chr27:20789485-20789240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 227

               
               
               Conread position:218-378
               
               
               Cow position:chr27:24306728-24306888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:218-535
               
               
               Cow position:chr27:21351122-21350802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:223-426
               
               
               Cow position:chr27:13274251-13274046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):134, 90

               
               
               Conread position:30-475
               
               
               Cow position:chr28:4834593-4835036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:38-523
               
               
               Cow position:chr28:9636218-9636696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 6

               
               
               Conread position:42-284
               
               
               Cow position:chr28:30902358-30902122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:43-425
               
               
               Cow position:chr28:10863560-10863927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 68

               
               
               Conread position:43-534
               
               
               Cow position:chr28:21103580-21104097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 153

               
               
               Conread position:44-361
               
               
               Cow position:chr28:5138762-5139078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:47-264
               
               
               Cow position:chr28:11398559-11398781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:47-482
               
               
               Cow position:chr28:4159198-4158754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:50-251
               
               
               Cow position:chr28:17943951-17943759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):165, 22

               
               
               Conread position:50-288
               
               
               Cow position:chr28:6563661-6563906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:50-357
               
               
               Cow position:chr28:7618930-7619230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):167, 15

               
               
               Conread position:50-535
               
               
               Cow position:chr28:11527030-11527507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:51-288
               
               
               Cow position:chr28:19038789-19039027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:52-535
               
               
               Cow position:chr28:21868686-21868201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 94

               
               
               Conread position:53-535
               
               
               Cow position:chr28:21502607-21502144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:54-231
               
               
               Cow position:chr28:34830381-34830203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):87, 120

               
               
               Conread position:55-256
               
               
               Cow position:chr28:3678585-3678386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:55-286
               
               
               Cow position:chr28:26826449-26826217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):29, 134

               
               
               Conread position:55-363
               
               
               Cow position:chr28:7350877-7350574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 89

               
               
               Conread position:55-458
               
               
               Cow position:chr28:1383048-1383453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:55-468
               
               
               Cow position:chr28:2524169-2523739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):16, 138

               
               
               Conread position:55-533
               
               
               Cow position:chr28:16918949-16919413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:55-535
               
               
               Cow position:chr28:22332754-22332298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:56-235
               
               
               Cow position:chr28:29500633-29500445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:56-304
               
               
               Cow position:chr28:9705883-9705629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):22, 190

               
               
               Conread position:56-443
               
               
               Cow position:chr28:26328186-26327796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:56-470
               
               
               Cow position:chr28:26982510-26982930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:288
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:56-518
               
               
               Cow position:chr28:11884304-11884757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:56-523
               
               
               Cow position:chr28:31841126-31841579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):359, 41

               
               
               Conread position:56-533
               
               
               Cow position:chr28:27218546-27218071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 24

               
               
               Conread position:57-272
               
               
               Cow position:chr28:16362318-16362526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 8

               
               
               Conread position:57-280
               
               
               Cow position:chr28:4876660-4876443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:57-340
               
               
               Cow position:chr28:3445257-3445541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:57-470
               
               
               Cow position:chr28:11828739-11829126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:57-512
               
               
               Cow position:chr28:10053104-10053566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:57-516
               
               
               Cow position:chr28:8347956-8347503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:57-530
               
               
               Cow position:chr28:24966610-24966142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 8

               
               
               Conread position:57-535
               
               
               Cow position:chr28:4307665-4308149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:338
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):22, 142

               
               
               Conread position:57-535
               
               
               Cow position:chr28:22346246-22345768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 406

               
               
               Conread position:58-395
               
               
               Cow position:chr28:25129108-25128768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 87

               
               
               Conread position:58-414
               
               
               Cow position:chr28:8140707-8140348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 254

               
               
               Conread position:59-390
               
               
               Cow position:chr28:19564013-19564338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:59-535
               
               
               Cow position:chr28:23616628-23616151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:60-312
               
               
               Cow position:chr28:5255092-5254843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):51, 86

               
               
               Conread position:60-321
               
               
               Cow position:chr28:11816463-11816707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):157, 50

               
               
               Conread position:60-402
               
               
               Cow position:chr28:12672240-12672583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 134

               
               
               Conread position:60-529
               
               
               Cow position:chr28:22371458-22371921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:60-535
               
               
               Cow position:chr28:11426327-11426796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:60-535
               
               
               Cow position:chr28:21845170-21844705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 22

               
               
               Conread position:61-434
               
               
               Cow position:chr28:24082490-24082116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 85

               
               
               Conread position:62-229
               
               
               Cow position:chr28:4077121-4077295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:62-289
               
               
               Cow position:chr28:8396542-8396326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):153, 19

               
               
               Conread position:62-347
               
               
               Cow position:chr28:4823820-4823541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:62-355
               
               
               Cow position:chr28:17740044-17739749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):43, 192

               
               
               Conread position:62-411
               
               
               Cow position:chr28:3449525-3449168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:62-461
               
               
               Cow position:chr28:19055234-19054835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:62-488
               
               
               Cow position:chr28:28631963-28631519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:62-514
               
               
               Cow position:chr28:751447-750997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):49, 151

               
               
               Conread position:62-533
               
               
               Cow position:chr28:5204404-5203953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 47

               
               
               Conread position:62-533
               
               
               Cow position:chr28:5236377-5236849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr28:6059250-6059724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:62-535
               
               
               Cow position:chr28:10615734-10616202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:314
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):153, 17

               
               
               Conread position:62-535
               
               
               Cow position:chr28:20125002-20124534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:63-387
               
               
               Cow position:chr28:6358193-6358517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 10

               
               
               Conread position:63-457
               
               
               Cow position:chr28:4881032-4881422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:281
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):6, 19

               
               
               Conread position:63-494
               
               
               Cow position:chr28:5436870-5437301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:63-530
               
               
               Cow position:chr28:11584991-11585454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:64-274
               
               
               Cow position:chr28:9109426-9109222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:64-281
               
               
               Cow position:chr28:4877213-4877432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:64-347
               
               
               Cow position:chr28:3410774-3411057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:64-533
               
               
               Cow position:chr28:9740673-9740222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:64-535
               
               
               Cow position:chr28:28765690-28766161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:307
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):117, 14

               
               
               Conread position:65-255
               
               
               Cow position:chr28:8936366-8936175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:65-300
               
               
               Cow position:chr28:29850606-29850835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:65-305
               
               
               Cow position:chr28:11987379-11987149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):190, 82

               
               
               Conread position:65-305
               
               
               Cow position:chr28:12055617-12055387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):190, 82

               
               
               Conread position:65-306
               
               
               Cow position:chr28:7131875-7132112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:65-398
               
               
               Cow position:chr28:23296533-23296205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:65-454
               
               
               Cow position:chr28:27313513-27313919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:275
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):46, 112

               
               
               Conread position:65-520
               
               
               Cow position:chr28:16204116-16204570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:65-529
               
               
               Cow position:chr28:4071174-4070724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 78

               
               
               Conread position:65-529
               
               
               Cow position:chr28:4282272-4282737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 104

               
               
               Conread position:65-535
               
               
               Cow position:chr28:12964798-12964326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 180

               
               
               Conread position:66-289
               
               
               Cow position:chr28:5805874-5805662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):148, 13

               
               
               Conread position:66-289
               
               
               Cow position:chr28:7557512-7557743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:66-340
               
               
               Cow position:chr28:20759478-20759760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 246

               
               
               Conread position:66-445
               
               
               Cow position:chr28:4643555-4643928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 75

               
               
               Conread position:66-461
               
               
               Cow position:chr28:4809985-4809612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 43

               
               
               Conread position:66-488
               
               
               Cow position:chr28:4089848-4090248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:67-305
               
               
               Cow position:chr28:4006995-4006762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):42, 88

               
               
               Conread position:67-393
               
               
               Cow position:chr28:22813462-22813152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:67-433
               
               
               Cow position:chr28:10057375-10057745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:68-311
               
               
               Cow position:chr28:12991347-12991105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:68-527
               
               
               Cow position:chr28:11422607-11423047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 14

               
               
               Conread position:70-297
               
               
               Cow position:chr28:8259844-8259611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 129

               
               
               Conread position:71-370
               
               
               Cow position:chr28:3741080-3740792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:71-409
               
               
               Cow position:chr28:11346280-11346614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:71-446
               
               
               Cow position:chr28:13527408-13527037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):31, 195

               
               
               Conread position:71-510
               
               
               Cow position:chr28:4016733-4016304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 64

               
               
               Conread position:71-534
               
               
               Cow position:chr28:29416515-29416966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:72-249
               
               
               Cow position:chr28:2151231-2151409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:72-514
               
               
               Cow position:chr28:12951625-12951203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:72-535
               
               
               Cow position:chr28:3492578-3493035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:72-535
               
               
               Cow position:chr28:5684909-5684453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:73-288
               
               
               Cow position:chr28:32358312-32358100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-298
               
               
               Cow position:chr28:28501449-28501214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):42, 179

               
               
               Conread position:73-379
               
               
               Cow position:chr28:4013291-4012990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-382
               
               
               Cow position:chr28:4182209-4181900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:73-461
               
               
               Cow position:chr28:30937475-30937848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 36

               
               
               Conread position:73-530
               
               
               Cow position:chr28:13474507-13474060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:73-533
               
               
               Cow position:chr28:8787747-8787301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:73-534
               
               
               Cow position:chr28:22500298-22500731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:73-535
               
               
               Cow position:chr28:25057164-25056720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 72

               
               
               Conread position:74-535
               
               
               Cow position:chr28:16369882-16370325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 37

               
               
               Conread position:75-228
               
               
               Cow position:chr28:4588520-4588370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:75-417
               
               
               Cow position:chr28:7008775-7009112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:75-458
               
               
               Cow position:chr28:14720578-14720956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:75-514
               
               
               Cow position:chr28:23460349-23459915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:299
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:76-277
               
               
               Cow position:chr28:24996413-24996610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:79-535
               
               
               Cow position:chr28:22308846-22308407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:80-535
               
               
               Cow position:chr28:26533745-26533291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:81-312
               
               
               Cow position:chr28:6975434-6975209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:81-419
               
               
               Cow position:chr28:19262384-19262728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:81-521
               
               
               Cow position:chr28:9285177-9285615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:81-533
               
               
               Cow position:chr28:24672468-24672024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:81-535
               
               
               Cow position:chr28:3023716-3024163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:81-535
               
               
               Cow position:chr28:3746397-3745951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 54

               
               
               Conread position:82-529
               
               
               Cow position:chr28:12430805-12430363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:87-461
               
               
               Cow position:chr28:9684143-9684496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:88-533
               
               
               Cow position:chr28:14998257-14997815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:89-343
               
               
               Cow position:chr28:26531089-26531343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:89-381
               
               
               Cow position:chr28:17071532-17071232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:89-452
               
               
               Cow position:chr28:21363932-21363574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):128, 154

               
               
               Conread position:89-529
               
               
               Cow position:chr28:16346346-16346771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:90-520
               
               
               Cow position:chr28:34430232-34430663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:90-535
               
               
               Cow position:chr28:26743822-26743371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 226

               
               
               Conread position:92-291
               
               
               Cow position:chr28:4364637-4364833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:97-370
               
               
               Cow position:chr28:7927348-7927084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):227, 12

               
               
               Conread position:100-533
               
               
               Cow position:chr28:4138486-4138935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:308
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:104-440
               
               
               Cow position:chr28:4440473-4440143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):39, 74

               
               
               Conread position:104-524
               
               
               Cow position:chr28:4913918-4914342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:286
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):69, 110

               
               
               Conread position:104-535
               
               
               Cow position:chr28:7512407-7512843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 86

               
               
               Conread position:104-535
               
               
               Cow position:chr28:10745389-10744958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 54

               
               
               Conread position:109-310
               
               
               Cow position:chr28:27429195-27429002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):106, 31

               
               
               Conread position:109-382
               
               
               Cow position:chr28:26055647-26055373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 31

               
               
               Conread position:109-534
               
               
               Cow position:chr28:34442587-34443014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 80

               
               
               Conread position:112-535
               
               
               Cow position:chr28:11686852-11687284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:115-305
               
               
               Cow position:chr28:10775548-10775736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):136, 60

               
               
               Conread position:116-533
               
               
               Cow position:chr28:23676301-23675895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 39

               
               
               Conread position:136-445
               
               
               Cow position:chr28:2131781-2132084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 32

               
               
               Conread position:140-530
               
               
               Cow position:chr28:29434287-29434671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):78, 193

               
               
               Conread position:143-324
               
               
               Cow position:chr28:7498009-7498192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:167-286
               
               
               Cow position:chr28:25675391-25675511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:167-334
               
               
               Cow position:chr28:4438826-4438657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:167-392
               
               
               Cow position:chr28:27161213-27161440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):145, 136

               
               
               Conread position:167-535
               
               
               Cow position:chr28:2862982-2862610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:168-333
               
               
               Cow position:chr28:2762308-2762142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:168-530
               
               
               Cow position:chr28:18591383-18591024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 70

               
               
               Conread position:168-533
               
               
               Cow position:chr28:26614986-26614646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):49, 125

               
               
               Conread position:169-386
               
               
               Cow position:chr28:16245953-16246169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:169-444
               
               
               Cow position:chr28:32365955-32365681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:169-457
               
               
               Cow position:chr28:2960718-2961009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:169-529
               
               
               Cow position:chr28:14649453-14649102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 8

               
               
               Conread position:169-531
               
               
               Cow position:chr28:15043750-15044102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:169-534
               
               
               Cow position:chr28:10172305-10172664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 127

               
               
               Conread position:169-535
               
               
               Cow position:chr28:7865441-7865077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 129

               
               
               Conread position:169-535
               
               
               Cow position:chr28:10588910-10589280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 23

               
               
               Conread position:169-535
               
               
               Cow position:chr28:12619686-12619311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:169-535
               
               
               Cow position:chr28:19025893-19026254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 258

               
               
               Conread position:170-534
               
               
               Cow position:chr28:6971237-6971589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 182

               
               
               Conread position:170-535
               
               
               Cow position:chr28:8021992-8022362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 57

               
               
               Conread position:172-361
               
               
               Cow position:chr28:12070339-12070154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:172-435
               
               
               Cow position:chr28:4763988-4763722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:172-445
               
               
               Cow position:chr28:2752385-2752662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):46, 142

               
               
               Conread position:172-530
               
               
               Cow position:chr28:11752030-11752391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 286

               
               
               Conread position:177-434
               
               
               Cow position:chr28:24018088-24017843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:177-535
               
               
               Cow position:chr28:26922264-26922615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 121

               
               
               Conread position:177-535
               
               
               Cow position:chr28:29199834-29199476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 161

               
               
               Conread position:181-482
               
               
               Cow position:chr28:18186656-18186347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:188-534
               
               
               Cow position:chr28:8408827-8408486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 123

               
               
               Conread position:192-535
               
               
               Cow position:chr28:25806662-25806338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):25, 116

               
               
               Conread position:194-527
               
               
               Cow position:chr28:21380968-21380635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 263

               
               
               Conread position:195-448
               
               
               Cow position:chr28:4098916-4098674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:203-535
               
               
               Cow position:chr28:16770669-16770341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):63, 138

               
               
               Conread position:207-508
               
               
               Cow position:chr28:11817893-11818183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):10, 94

               
               
               Conread position:207-535
               
               
               Cow position:chr28:5827024-5826697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:210-528
               
               
               Cow position:chr28:16110008-16109700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:214-527
               
               
               Cow position:chr28:4588163-4587857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 21

               
               
               Conread position:216-535
               
               
               Cow position:chr28:19079781-19080099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):172, 81

               
               
               Conread position:218-534
               
               
               Cow position:chr28:7751239-7751551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:219-503
               
               
               Cow position:chr28:2737745-2738030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 77

               
               
               Conread position:251-433
               
               
               Cow position:chr28:7607947-7608133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:10-244
               
               
               Cow position:chr29:14761708-14761483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):205, 14

               
               
               Conread position:25-534
               
               
               Cow position:chr29:16610003-16609481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 160

               
               
               Conread position:39-530
               
               
               Cow position:chr29:10839174-10838697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:41-535
               
               
               Cow position:chr29:9709926-9709441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 24

               
               
               Conread position:42-266
               
               
               Cow position:chr29:25288689-25288916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:43-530
               
               
               Cow position:chr29:12680391-12679902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 139

               
               
               Conread position:44-380
               
               
               Cow position:chr29:28674474-28674814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:45-493
               
               
               Cow position:chr29:24035176-24035631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:304
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):45, 105

               
               
               Conread position:46-426
               
               
               Cow position:chr29:7425859-7425482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:46-494
               
               
               Cow position:chr29:31489554-31489103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 159

               
               
               Conread position:46-535
               
               
               Cow position:chr29:16657920-16657433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:47-525
               
               
               Cow position:chr29:34773520-34773975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 61

               
               
               Conread position:48-332
               
               
               Cow position:chr29:31200500-31200198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:50-340
               
               
               Cow position:chr29:38979854-38980136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:50-445
               
               
               Cow position:chr29:25268366-25267948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:50-512
               
               
               Cow position:chr29:23845062-23844597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:51-384
               
               
               Cow position:chr29:5046875-5046541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:52-347
               
               
               Cow position:chr29:32656656-32656359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:54-453
               
               
               Cow position:chr29:29942507-29942915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:54-535
               
               
               Cow position:chr29:3583896-3584383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:320
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:55-264
               
               
               Cow position:chr29:9800879-9800659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 148

               
               
               Conread position:55-267
               
               
               Cow position:chr29:629754-629544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):115, 25

               
               
               Conread position:55-296
               
               
               Cow position:chr29:7290990-7290753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:55-381
               
               
               Cow position:chr29:5830800-5831144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:55-382
               
               
               Cow position:chr29:1008041-1007707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:55-387
               
               
               Cow position:chr29:29188878-29189204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:55-392
               
               
               Cow position:chr29:13028670-13028319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 204

               
               
               Conread position:55-535
               
               
               Cow position:chr29:21932902-21933371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:323
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:56-230
               
               
               Cow position:chr29:40112597-40112425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):48, 26

               
               
               Conread position:56-305
               
               
               Cow position:chr29:39038051-39038299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:56-535
               
               
               Cow position:chr29:31929205-31928721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 84

               
               
               Conread position:57-352
               
               
               Cow position:chr29:36249254-36248956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:60-311
               
               
               Cow position:chr29:4070838-4070590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):17, 95

               
               
               Conread position:60-369
               
               
               Cow position:chr29:18449922-18450229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:60-535
               
               
               Cow position:chr29:22068526-22069005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:328
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:61-444
               
               
               Cow position:chr29:5408926-5409318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):17, 87

               
               
               Conread position:62-351
               
               
               Cow position:chr29:38347816-38348107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:62-431
               
               
               Cow position:chr29:12025265-12025629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:62-515
               
               
               Cow position:chr29:27859002-27858554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:62-529
               
               
               Cow position:chr29:35458556-35459022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:323
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:62-533
               
               
               Cow position:chr29:22162051-22162509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 74

               
               
               Conread position:62-533
               
               
               Cow position:chr29:22613634-22613179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 82

               
               
               Conread position:62-535
               
               
               Cow position:chr29:17462567-17463037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:331
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr29:31786886-31786420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):57, 20

               
               
               Conread position:63-305
               
               
               Cow position:chr29:17804743-17804502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):21, 84

               
               
               Conread position:63-337
               
               
               Cow position:chr29:501411-501137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:63-363
               
               
               Cow position:chr29:20167634-20167332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:63-364
               
               
               Cow position:chr29:15947381-15947080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 119

               
               
               Conread position:63-446
               
               
               Cow position:chr29:41112678-41113030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):46, 60

               
               
               Conread position:64-530
               
               
               Cow position:chr29:39111113-39111561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:64-535
               
               
               Cow position:chr29:19756647-19756190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:65-250
               
               
               Cow position:chr29:4440995-4441181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:65-272
               
               
               Cow position:chr29:27812172-27811968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):178, 79

               
               
               Conread position:65-358
               
               
               Cow position:chr29:20770554-20770258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:66-311
               
               
               Cow position:chr29:28066688-28066454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):149, 16

               
               
               Conread position:66-328
               
               
               Cow position:chr29:23155442-23155174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:66-371
               
               
               Cow position:chr29:8292704-8293014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 111

               
               
               Conread position:66-401
               
               
               Cow position:chr29:38440466-38440114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 147

               
               
               Conread position:67-364
               
               
               Cow position:chr29:21666293-21665996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:67-438
               
               
               Cow position:chr29:31674837-31674465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:68-277
               
               
               Cow position:chr29:15798157-15797948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:68-454
               
               
               Cow position:chr29:20910484-20910878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:68-535
               
               
               Cow position:chr29:732817-732364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:69-240
               
               
               Cow position:chr29:33143151-33143321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:69-252
               
               
               Cow position:chr29:17282267-17282089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:69-284
               
               
               Cow position:chr29:19363913-19363700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:69-299
               
               
               Cow position:chr29:22734900-22735131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:69-533
               
               
               Cow position:chr29:4479961-4480428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 198

               
               
               Conread position:71-288
               
               
               Cow position:chr29:9378839-9378622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:71-288
               
               
               Cow position:chr29:21645521-21645303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 149

               
               
               Conread position:71-436
               
               
               Cow position:chr29:17297342-17296968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:71-535
               
               
               Cow position:chr29:17110155-17109712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:72-266
               
               
               Cow position:chr29:7443864-7444054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:72-286
               
               
               Cow position:chr29:36781107-36781317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 74

               
               
               Conread position:72-451
               
               
               Cow position:chr29:36210353-36209986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 124

               
               
               Conread position:72-534
               
               
               Cow position:chr29:26779079-26778627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:72-535
               
               
               Cow position:chr29:14501798-14501336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:73-276
               
               
               Cow position:chr29:43088508-43088308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:73-304
               
               
               Cow position:chr29:9310805-9310569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:73-366
               
               
               Cow position:chr29:16011469-16011759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:73-382
               
               
               Cow position:chr29:7624367-7624067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):144, 63

               
               
               Conread position:73-527
               
               
               Cow position:chr29:25737218-25737667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:73-533
               
               
               Cow position:chr29:8926248-8926715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 322

               
               
               Conread position:73-535
               
               
               Cow position:chr29:19762465-19762014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 79

               
               
               Conread position:73-535
               
               
               Cow position:chr29:36531068-36530605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:74-277
               
               
               Cow position:chr29:15796685-15796482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):80, 73

               
               
               Conread position:74-461
               
               
               Cow position:chr29:19125531-19125155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 218

               
               
               Conread position:74-535
               
               
               Cow position:chr29:40583986-40583539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):90, 54

               
               
               Conread position:75-299
               
               
               Cow position:chr29:26540340-26540566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:75-412
               
               
               Cow position:chr29:36220743-36220388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:75-524
               
               
               Cow position:chr29:41531051-41530603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 129

               
               
               Conread position:76-340
               
               
               Cow position:chr29:30548973-30548708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:76-340
               
               
               Cow position:chr29:44139046-44139311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:77-271
               
               
               Cow position:chr29:36697955-36697759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:77-531
               
               
               Cow position:chr29:5893044-5892593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 258

               
               
               Conread position:78-417
               
               
               Cow position:chr29:24046195-24045846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:80-349
               
               
               Cow position:chr29:29324226-29324488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:81-360
               
               
               Cow position:chr29:23812854-23813123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:81-534
               
               
               Cow position:chr29:10058349-10058784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 60

               
               
               Conread position:82-288
               
               
               Cow position:chr29:36357321-36357114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 156

               
               
               Conread position:82-534
               
               
               Cow position:chr29:12783762-12784212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 161

               
               
               Conread position:82-535
               
               
               Cow position:chr29:40117758-40117314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:83-535
               
               
               Cow position:chr29:21443149-21443602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 26

               
               
               Conread position:86-530
               
               
               Cow position:chr29:7955799-7956237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 116

               
               
               Conread position:88-292
               
               
               Cow position:chr29:42444786-42444588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:88-402
               
               
               Cow position:chr29:34358792-34359109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:88-418
               
               
               Cow position:chr29:35084036-35084368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 80

               
               
               Conread position:88-492
               
               
               Cow position:chr29:30441126-30440711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):23, 82

               
               
               Conread position:89-306
               
               
               Cow position:chr29:32197880-32197664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:89-392
               
               
               Cow position:chr29:27846670-27846350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):24, 220

               
               
               Conread position:94-296
               
               
               Cow position:chr29:22723777-22723578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 47

               
               
               Conread position:94-348
               
               
               Cow position:chr29:23825031-23825292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:100-445
               
               
               Cow position:chr29:28587616-28587285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):117, 40

               
               
               Conread position:100-533
               
               
               Cow position:chr29:465223-465658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:104-429
               
               
               Cow position:chr29:29795212-29795544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:104-535
               
               
               Cow position:chr29:38582138-38581711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 90

               
               
               Conread position:109-340
               
               
               Cow position:chr29:32176831-32176614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):207, 33

               
               
               Conread position:110-535
               
               
               Cow position:chr29:29975201-29974783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 80

               
               
               Conread position:128-529
               
               
               Cow position:chr29:1557073-1556680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 32

               
               
               Conread position:140-445
               
               
               Cow position:chr29:27589059-27588753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 137

               
               
               Conread position:142-535
               
               
               Cow position:chr29:18085704-18085332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):74, 210

               
               
               Conread position:143-391
               
               
               Cow position:chr29:26559117-26559358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:147-340
               
               
               Cow position:chr29:38978660-38978464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:153-498
               
               
               Cow position:chr29:40298897-40299233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 142

               
               
               Conread position:157-349
               
               
               Cow position:chr29:30918666-30918472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 154

               
               
               Conread position:162-521
               
               
               Cow position:chr29:26615605-26615969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 278

               
               
               Conread position:166-353
               
               
               Cow position:chr29:18012666-18012474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:167-351
               
               
               Cow position:chr29:23220394-23220578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):49, 39

               
               
               Conread position:167-367
               
               
               Cow position:chr29:742542-742733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 131

               
               
               Conread position:167-413
               
               
               Cow position:chr29:4002999-4002756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):48, 166

               
               
               Conread position:167-520
               
               
               Cow position:chr29:17409442-17409086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:168-525
               
               
               Cow position:chr29:22895833-22895468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):49, 119

               
               
               Conread position:168-535
               
               
               Cow position:chr29:4367832-4367463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:169-334
               
               
               Cow position:chr29:21285464-21285300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):143, 127

               
               
               Conread position:169-450
               
               
               Cow position:chr29:23243773-23244057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 115

               
               
               Conread position:169-469
               
               
               Cow position:chr29:32210966-32211251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:169-495
               
               
               Cow position:chr29:463547-463871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:169-535
               
               
               Cow position:chr29:4874775-4875161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:171-525
               
               
               Cow position:chr29:40853031-40852688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):44, 137

               
               
               Conread position:171-529
               
               
               Cow position:chr29:17607519-17607164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:172-376
               
               
               Cow position:chr29:24578965-24578755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:175-535
               
               
               Cow position:chr29:15738242-15738602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:176-423
               
               
               Cow position:chr29:9454961-9455204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:176-526
               
               
               Cow position:chr29:23983857-23984213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 284

               
               
               Conread position:177-445
               
               
               Cow position:chr29:5186396-5186667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 120

               
               
               Conread position:177-533
               
               
               Cow position:chr29:5098669-5099018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 116

               
               
               Conread position:179-480
               
               
               Cow position:chr29:43008989-43009287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:190-515
               
               
               Cow position:chr29:868859-868535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:190-528
               
               
               Cow position:chr29:11562697-11562363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 110

               
               
               Conread position:192-445
               
               
               Cow position:chr29:44682022-44682269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):25, 92

               
               
               Conread position:196-529
               
               
               Cow position:chr29:29302581-29302906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):104, 96

               
               
               Conread position:198-535
               
               
               Cow position:chr29:26672835-26673161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 103

               
               
               Conread position:199-445
               
               
               Cow position:chr29:10018654-10018401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:203-535
               
               
               Cow position:chr29:40166315-40165984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 142

               
               
               Conread position:207-334
               
               
               Cow position:chr29:31477046-31477176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:207-454
               
               
               Cow position:chr29:44988723-44988959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:210-417
               
               
               Cow position:chr29:5275188-5275399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):5, 149

               
               
               Conread position:210-514
               
               
               Cow position:chr29:7966310-7966010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 138

               
               
               Conread position:212-535
               
               
               Cow position:chr29:35485307-35484986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):140, 91

               
               
               Conread position:215-350
               
               
               Cow position:chr29:33551505-33551641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:218-508
               
               
               Cow position:chr29:22585346-22585638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):134, 93

               
               
               Conread position:223-520
               
               
               Cow position:chr29:41747498-41747197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):87, 208

               
               
               Conread position:223-535
               
               
               Cow position:chr29:11135846-11136146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:228-436
               
               
               Cow position:chr29:1124700-1124492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):120, 82

               
               
               Conread position:239-530
               
               
               Cow position:chr29:31594093-31594368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):72, 181

               
               
               Conread position:244-535
               
               
               Cow position:chr29:4328443-4328176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):267, 11

               
               
               Conread position:245-535
               
               
               Cow position:chr29:42849253-42848969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:259-533
               
               
               Cow position:chr29:43311778-43312051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:9-377
               
               
               Cow position:chr3:21014707-21015087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 188

               
               
               Conread position:43-308
               
               
               Cow position:chr3:5040094-5040364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 139

               
               
               Conread position:44-529
               
               
               Cow position:chr3:15159240-15158767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:45-333
               
               
               Cow position:chr3:76270089-76269816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):172, 7

               
               
               Conread position:45-427
               
               
               Cow position:chr3:19793102-19792716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):170, 7

               
               
               Conread position:46-256
               
               
               Cow position:chr3:55730258-55730474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 151

               
               
               Conread position:46-535
               
               
               Cow position:chr3:18067335-18066854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 36

               
               
               Conread position:47-311
               
               
               Cow position:chr3:11229166-11229426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):168, 105

               
               
               Conread position:47-337
               
               
               Cow position:chr3:10591308-10591603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:47-412
               
               
               Cow position:chr3:81087434-81087783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 5

               
               
               Conread position:47-435
               
               
               Cow position:chr3:45667138-45667532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 108

               
               
               Conread position:47-525
               
               
               Cow position:chr3:13301640-13302126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:48-235
               
               
               Cow position:chr3:44594825-44594637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:49-456
               
               
               Cow position:chr3:83215474-83215048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:50-401
               
               
               Cow position:chr3:19586067-19585711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:51-321
               
               
               Cow position:chr3:39247832-39248091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):162, 14

               
               
               Conread position:51-356
               
               
               Cow position:chr3:22165216-22165523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:51-357
               
               
               Cow position:chr3:69785424-69785730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:51-514
               
               
               Cow position:chr3:82019640-82020102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:51-524
               
               
               Cow position:chr3:7337580-7338042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:51-528
               
               
               Cow position:chr3:78945621-78946112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 228

               
               
               Conread position:52-402
               
               
               Cow position:chr3:23920225-23920581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):25, 144

               
               
               Conread position:52-426
               
               
               Cow position:chr3:55819951-55819572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):13, 104

               
               
               Conread position:52-535
               
               
               Cow position:chr3:23168868-23169350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 10

               
               
               Conread position:53-535
               
               
               Cow position:chr3:4461291-4461769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:54-288
               
               
               Cow position:chr3:41863822-41863587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:54-430
               
               
               Cow position:chr3:75107969-75107615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:54-447
               
               
               Cow position:chr3:59035241-59034841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):57, 139

               
               
               Conread position:54-485
               
               
               Cow position:chr3:74754510-74754101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 8

               
               
               Conread position:54-535
               
               
               Cow position:chr3:54049827-54050299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 111

               
               
               Conread position:55-235
               
               
               Cow position:chr3:3262625-3262818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:55-246
               
               
               Cow position:chr3:21959864-21959664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:55-285
               
               
               Cow position:chr3:22924183-22924409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 91

               
               
               Conread position:55-306
               
               
               Cow position:chr3:8349374-8349620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):161, 63

               
               
               Conread position:55-312
               
               
               Cow position:chr3:56948899-56949149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:55-347
               
               
               Cow position:chr3:49363302-49363020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:55-367
               
               
               Cow position:chr3:3656710-3656394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):102, 26

               
               
               Conread position:55-374
               
               
               Cow position:chr3:48468371-48468059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:55-377
               
               
               Cow position:chr3:58134488-58134814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:55-392
               
               
               Cow position:chr3:73237378-73237053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:55-397
               
               
               Cow position:chr3:3883622-3883965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:55-461
               
               
               Cow position:chr3:68145658-68146046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):147, 56

               
               
               Conread position:55-514
               
               
               Cow position:chr3:75080952-75080508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 70

               
               
               Conread position:55-529
               
               
               Cow position:chr3:54946318-54945851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 74

               
               
               Conread position:55-530
               
               
               Cow position:chr3:79221056-79220574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 62

               
               
               Conread position:55-533
               
               
               Cow position:chr3:9662971-9663465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 227

               
               
               Conread position:55-533
               
               
               Cow position:chr3:50768876-50768401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 113

               
               
               Conread position:55-535
               
               
               Cow position:chr3:2518343-2518817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 85

               
               
               Conread position:55-535
               
               
               Cow position:chr3:14801939-14801471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 26

               
               
               Conread position:55-535
               
               
               Cow position:chr3:15953887-15954357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-535
               
               
               Cow position:chr3:38864316-38863833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 84

               
               
               Conread position:55-535
               
               
               Cow position:chr3:53428721-53429171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 109

               
               
               Conread position:55-535
               
               
               Cow position:chr3:59605039-59604591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 84

               
               
               Conread position:55-535
               
               
               Cow position:chr3:80072339-80071837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:55-535
               
               
               Cow position:chr3:80565164-80564683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:56-311
               
               
               Cow position:chr3:51608988-51609243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 127

               
               
               Conread position:56-491
               
               
               Cow position:chr3:189069-188624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:56-531
               
               
               Cow position:chr3:15228645-15229095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:327
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:56-535
               
               
               Cow position:chr3:53271029-53270546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 138

               
               
               Conread position:56-535
               
               
               Cow position:chr3:55189557-55190030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:56-535
               
               
               Cow position:chr3:68707827-68708281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:56-535
               
               
               Cow position:chr3:72474115-72473627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:56-535
               
               
               Cow position:chr3:75158548-75158085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 23

               
               
               Conread position:57-398
               
               
               Cow position:chr3:54551513-54551874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):7, 138

               
               
               Conread position:57-434
               
               
               Cow position:chr3:26739229-26739603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):54, 134

               
               
               Conread position:57-496
               
               
               Cow position:chr3:12705354-12705799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:57-530
               
               
               Cow position:chr3:61170003-61169508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:321
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:57-535
               
               
               Cow position:chr3:53910299-53909834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:58-418
               
               
               Cow position:chr3:54100520-54100890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:58-447
               
               
               Cow position:chr3:75853143-75853525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:58-531
               
               
               Cow position:chr3:31309160-31309631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 134

               
               
               Conread position:60-261
               
               
               Cow position:chr3:23818679-23818481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:60-517
               
               
               Cow position:chr3:18393208-18393646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:60-520
               
               
               Cow position:chr3:77188635-77188177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 113

               
               
               Conread position:61-304
               
               
               Cow position:chr3:64648704-64648439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:61-305
               
               
               Cow position:chr3:3947227-3946984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):156, 73

               
               
               Conread position:61-340
               
               
               Cow position:chr3:31349920-31350193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:61-347
               
               
               Cow position:chr3:4549210-4548920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):13, 50

               
               
               Conread position:62-263
               
               
               Cow position:chr3:43388935-43389140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:62-267
               
               
               Cow position:chr3:25037815-25038008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):155, 19

               
               
               Conread position:62-290
               
               
               Cow position:chr3:15973760-15973527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:62-319
               
               
               Cow position:chr3:33002575-33002324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:62-334
               
               
               Cow position:chr3:59299763-59299494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):49, 70

               
               
               Conread position:62-337
               
               
               Cow position:chr3:64197020-64196739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 89

               
               
               Conread position:62-371
               
               
               Cow position:chr3:45700992-45700686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:62-402
               
               
               Cow position:chr3:55177560-55177904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 82

               
               
               Conread position:62-418
               
               
               Cow position:chr3:48810451-48810804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:62-535
               
               
               Cow position:chr3:210509-210042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:62-535
               
               
               Cow position:chr3:14465526-14465984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr3:16752065-16752527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr3:20674689-20675159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 97

               
               
               Conread position:62-535
               
               
               Cow position:chr3:39969675-39970152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:62-535
               
               
               Cow position:chr3:53738993-53739471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr3:68648366-68647880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:63-277
               
               
               Cow position:chr3:67407177-67407392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:63-283
               
               
               Cow position:chr3:48483366-48483146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):154, 25

               
               
               Conread position:63-314
               
               
               Cow position:chr3:71703647-71703416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):154, 38

               
               
               Conread position:63-398
               
               
               Cow position:chr3:6299645-6299320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:63-442
               
               
               Cow position:chr3:54373669-54374052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 26

               
               
               Conread position:63-522
               
               
               Cow position:chr3:83454972-83455419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 17

               
               
               Conread position:63-528
               
               
               Cow position:chr3:83474944-83474476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 293

               
               
               Conread position:63-533
               
               
               Cow position:chr3:9641747-9641286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:63-535
               
               
               Cow position:chr3:55970705-55970227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 138

               
               
               Conread position:64-535
               
               
               Cow position:chr3:10958057-10958508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 18

               
               
               Conread position:64-535
               
               
               Cow position:chr3:17456079-17456549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:64-535
               
               
               Cow position:chr3:71496940-71497426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 367

               
               
               Conread position:64-535
               
               
               Cow position:chr3:78077378-78076909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:65-239
               
               
               Cow position:chr3:4071580-4071759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):11, 137

               
               
               Conread position:65-275
               
               
               Cow position:chr3:19788653-19788854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):152, 35

               
               
               Conread position:65-299
               
               
               Cow position:chr3:5305989-5305751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:65-309
               
               
               Cow position:chr3:11281956-11281708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):47, 130

               
               
               Conread position:65-322
               
               
               Cow position:chr3:54067981-54067728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):115, 127

               
               
               Conread position:65-356
               
               
               Cow position:chr3:3316619-3316918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):14, 174

               
               
               Conread position:65-380
               
               
               Cow position:chr3:35055792-35056108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:65-386
               
               
               Cow position:chr3:72342433-72342109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:65-397
               
               
               Cow position:chr3:34871759-34871422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):17, 148

               
               
               Conread position:65-408
               
               
               Cow position:chr3:24468197-24468536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):46, 130

               
               
               Conread position:65-530
               
               
               Cow position:chr3:7330951-7331394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 44

               
               
               Conread position:65-533
               
               
               Cow position:chr3:15786754-15786285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:65-535
               
               
               Cow position:chr3:15388406-15387931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:65-535
               
               
               Cow position:chr3:75480185-75479732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:66-244
               
               
               Cow position:chr3:77098638-77098816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 89

               
               
               Conread position:66-282
               
               
               Cow position:chr3:73421297-73421524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 89

               
               
               Conread position:66-299
               
               
               Cow position:chr3:23131982-23132217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:66-361
               
               
               Cow position:chr3:48459143-48459439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):48, 98

               
               
               Conread position:66-370
               
               
               Cow position:chr3:15950731-15951031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:66-402
               
               
               Cow position:chr3:29946570-29946243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:66-402
               
               
               Cow position:chr3:71478779-71478440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:66-430
               
               
               Cow position:chr3:76922483-76922842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:66-460
               
               
               Cow position:chr3:23105178-23105575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 84

               
               
               Conread position:66-535
               
               
               Cow position:chr3:7763845-7763383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 130

               
               
               Conread position:67-305
               
               
               Cow position:chr3:9121026-9120791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:67-311
               
               
               Cow position:chr3:68004522-68004763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):150, 74

               
               
               Conread position:67-380
               
               
               Cow position:chr3:51403082-51402779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:67-511
               
               
               Cow position:chr3:26970996-26970570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 53

               
               
               Conread position:67-527
               
               
               Cow position:chr3:51578139-51578593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 114

               
               
               Conread position:67-530
               
               
               Cow position:chr3:48851784-48852241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-535
               
               
               Cow position:chr3:67929076-67929546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-535
               
               
               Cow position:chr3:73467811-73467339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:68-334
               
               
               Cow position:chr3:54981905-54982163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:68-520
               
               
               Cow position:chr3:59474304-59473847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:68-530
               
               
               Cow position:chr3:23408180-23408617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:68-531
               
               
               Cow position:chr3:15051768-15052213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:68-533
               
               
               Cow position:chr3:23471278-23471746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:69-284
               
               
               Cow position:chr3:24596250-24596456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):146, 35

               
               
               Conread position:69-391
               
               
               Cow position:chr3:18426518-18426840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:69-416
               
               
               Cow position:chr3:48072703-48073039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 82

               
               
               Conread position:69-499
               
               
               Cow position:chr3:68156910-68156487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 235

               
               
               Conread position:69-533
               
               
               Cow position:chr3:29891223-29891695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:69-534
               
               
               Cow position:chr3:45882082-45881630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:70-339
               
               
               Cow position:chr3:19682887-19682605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:70-522
               
               
               Cow position:chr3:22716095-22716548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:319
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):44, 295

               
               
               Conread position:71-260
               
               
               Cow position:chr3:22868536-22868729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:71-273
               
               
               Cow position:chr3:8522973-8523172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):43, 97

               
               
               Conread position:71-310
               
               
               Cow position:chr3:49344872-49344634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:71-321
               
               
               Cow position:chr3:63845121-63844860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:71-359
               
               
               Cow position:chr3:65019672-65019974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 239

               
               
               Conread position:71-415
               
               
               Cow position:chr3:60264541-60264879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:71-430
               
               
               Cow position:chr3:70761942-70762302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:71-457
               
               
               Cow position:chr3:6182052-6182409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:71-530
               
               
               Cow position:chr3:2506295-2506754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 224

               
               
               Conread position:71-533
               
               
               Cow position:chr3:74234362-74233922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 31

               
               
               Conread position:71-535
               
               
               Cow position:chr3:53790363-53790824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:73-252
               
               
               Cow position:chr3:17531553-17531739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 103

               
               
               Conread position:73-319
               
               
               Cow position:chr3:59933559-59933302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:73-355
               
               
               Cow position:chr3:44625000-44625268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:73-402
               
               
               Cow position:chr3:70333790-70334116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:73-445
               
               
               Cow position:chr3:57274237-57273872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:73-445
               
               
               Cow position:chr3:76267795-76268176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:73-504
               
               
               Cow position:chr3:18687080-18686668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:73-514
               
               
               Cow position:chr3:16333983-16333548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:73-520
               
               
               Cow position:chr3:57754296-57754749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:73-534
               
               
               Cow position:chr3:13353543-13353081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:73-535
               
               
               Cow position:chr3:71231577-71231126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:74-248
               
               
               Cow position:chr3:43895885-43896057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:74-350
               
               
               Cow position:chr3:14547177-14546904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:74-392
               
               
               Cow position:chr3:1517335-1517655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:74-435
               
               
               Cow position:chr3:15751545-15751906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 35

               
               
               Conread position:74-435
               
               
               Cow position:chr3:54506884-54506525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:74-436
               
               
               Cow position:chr3:7662035-7661667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:74-533
               
               
               Cow position:chr3:48363247-48362805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:75-282
               
               
               Cow position:chr3:52845732-52845520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:75-358
               
               
               Cow position:chr3:1037205-1036918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:75-392
               
               
               Cow position:chr3:79098277-79097962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:75-428
               
               
               Cow position:chr3:15153865-15153513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:75-452
               
               
               Cow position:chr3:22845082-22844713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 122

               
               
               Conread position:75-515
               
               
               Cow position:chr3:8061297-8060873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 36

               
               
               Conread position:75-534
               
               
               Cow position:chr3:83441716-83442158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:318
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:75-535
               
               
               Cow position:chr3:49460749-49461217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 99

               
               
               Conread position:76-496
               
               
               Cow position:chr3:78092335-78092746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:77-471
               
               
               Cow position:chr3:70609800-70609407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:77-520
               
               
               Cow position:chr3:73395290-73394851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:77-535
               
               
               Cow position:chr3:72777408-72776960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:311
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):140, 50

               
               
               Conread position:79-379
               
               
               Cow position:chr3:17058374-17058669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:79-535
               
               
               Cow position:chr3:17221960-17222424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 386

               
               
               Conread position:79-535
               
               
               Cow position:chr3:66900554-66901022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 395

               
               
               Conread position:81-357
               
               
               Cow position:chr3:31361594-31361312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:81-391
               
               
               Cow position:chr3:78093222-78093524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 48

               
               
               Conread position:81-472
               
               
               Cow position:chr3:4319890-4319494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 225

               
               
               Conread position:81-530
               
               
               Cow position:chr3:17936676-17937114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:81-533
               
               
               Cow position:chr3:68303489-68303050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:308
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:81-535
               
               
               Cow position:chr3:37041587-37041149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:308
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):136, 28

               
               
               Conread position:81-535
               
               
               Cow position:chr3:59610548-59610996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:82-334
               
               
               Cow position:chr3:10668709-10668961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:82-340
               
               
               Cow position:chr3:71474237-71474496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:82-535
               
               
               Cow position:chr3:75570276-75570721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:316
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):29, 51

               
               
               Conread position:83-334
               
               
               Cow position:chr3:4481113-4480858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):90, 188

               
               
               Conread position:84-535
               
               
               Cow position:chr3:11987496-11987050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:85-407
               
               
               Cow position:chr3:12978448-12978773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):30, 85

               
               
               Conread position:85-489
               
               
               Cow position:chr3:67930003-67930411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:294
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):26, 163

               
               
               Conread position:86-445
               
               
               Cow position:chr3:74079472-74079833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 82

               
               
               Conread position:88-400
               
               
               Cow position:chr3:79196927-79196610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 248

               
               
               Conread position:88-441
               
               
               Cow position:chr3:55434495-55434141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):23, 104

               
               
               Conread position:88-527
               
               
               Cow position:chr3:44932676-44932244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 79

               
               
               Conread position:89-300
               
               
               Cow position:chr3:26603383-26603603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):20, 217

               
               
               Conread position:89-392
               
               
               Cow position:chr3:73820202-73820511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):60, 195

               
               
               Conread position:89-523
               
               
               Cow position:chr3:69416615-69417056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:89-524
               
               
               Cow position:chr3:60933581-60933146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 86

               
               
               Conread position:91-302
               
               
               Cow position:chr3:53083822-53084039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:91-357
               
               
               Cow position:chr3:18607824-18607557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:91-529
               
               
               Cow position:chr3:70334531-70334977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:305
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):13, 50

               
               
               Conread position:100-535
               
               
               Cow position:chr3:24548682-24549112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:304
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:104-299
               
               
               Cow position:chr3:16505339-16505523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 39

               
               
               Conread position:104-426
               
               
               Cow position:chr3:18143968-18144292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:104-472
               
               
               Cow position:chr3:25945240-25944861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:104-514
               
               
               Cow position:chr3:52608326-52607925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 48

               
               
               Conread position:104-525
               
               
               Cow position:chr3:45279614-45279187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:104-533
               
               
               Cow position:chr3:18185222-18184790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 85

               
               
               Conread position:104-534
               
               
               Cow position:chr3:53222157-53221740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 56

               
               
               Conread position:104-535
               
               
               Cow position:chr3:74601257-74600837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:109-520
               
               
               Cow position:chr3:72391228-72390816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 88

               
               
               Conread position:110-454
               
               
               Cow position:chr3:53094789-53095139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):72, 80

               
               
               Conread position:113-357
               
               
               Cow position:chr3:32409356-32409104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:114-535
               
               
               Cow position:chr3:70565599-70566018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 174

               
               
               Conread position:116-348
               
               
               Cow position:chr3:19626374-19626605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):101, 87

               
               
               Conread position:121-488
               
               
               Cow position:chr3:21546975-21547334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:121-520
               
               
               Cow position:chr3:73709175-73708785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:130-530
               
               
               Cow position:chr3:49328062-49327669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 21

               
               
               Conread position:133-429
               
               
               Cow position:chr3:81506991-81507290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:135-382
               
               
               Cow position:chr3:22510143-22509895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):5, 58

               
               
               Conread position:139-519
               
               
               Cow position:chr3:73461079-73460715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 212

               
               
               Conread position:140-321
               
               
               Cow position:chr3:20334121-20333937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:140-535
               
               
               Cow position:chr3:73442982-73443367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:141-339
               
               
               Cow position:chr3:15173192-15172991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:141-482
               
               
               Cow position:chr3:15506562-15506221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:141-535
               
               
               Cow position:chr3:49383059-49382672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):68, 26

               
               
               Conread position:143-334
               
               
               Cow position:chr3:44330326-44330520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:143-367
               
               
               Cow position:chr3:6519856-6520090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 68

               
               
               Conread position:143-535
               
               
               Cow position:chr3:12711806-12712203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 167

               
               
               Conread position:143-535
               
               
               Cow position:chr3:56059918-56059527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:144-530
               
               
               Cow position:chr3:46901304-46900920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 20

               
               
               Conread position:144-535
               
               
               Cow position:chr3:62789067-62789484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 99

               
               
               Conread position:147-530
               
               
               Cow position:chr3:3738588-3738216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:153-336
               
               
               Cow position:chr3:3478154-3478340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:153-414
               
               
               Cow position:chr3:53508710-53508458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 146

               
               
               Conread position:153-435
               
               
               Cow position:chr3:58767360-58767084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:154-534
               
               
               Cow position:chr3:59799346-59798975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 157

               
               
               Conread position:155-535
               
               
               Cow position:chr3:55271948-55272320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 252

               
               
               Conread position:155-535
               
               
               Cow position:chr3:67704643-67704260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 277

               
               
               Conread position:158-482
               
               
               Cow position:chr3:26960494-26960821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 36

               
               
               Conread position:162-331
               
               
               Cow position:chr3:81277378-81277549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:162-436
               
               
               Cow position:chr3:22232565-22232837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 12

               
               
               Conread position:162-535
               
               
               Cow position:chr3:69750623-69750981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:165-361
               
               
               Cow position:chr3:28496920-28496717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 12

               
               
               Conread position:166-279
               
               
               Cow position:chr3:16601528-16601414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:166-306
               
               
               Cow position:chr3:82629401-82629261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:167-456
               
               
               Cow position:chr3:59883984-59884278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:167-525
               
               
               Cow position:chr3:57624549-57624193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 134

               
               
               Conread position:168-382
               
               
               Cow position:chr3:61116769-61116989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:168-533
               
               
               Cow position:chr3:5097291-5096925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:168-535
               
               
               Cow position:chr3:29887336-29887704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 292

               
               
               Conread position:169-302
               
               
               Cow position:chr3:29828064-29828199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:169-302
               
               
               Cow position:chr3:44960922-44961055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 104

               
               
               Conread position:169-310
               
               
               Cow position:chr3:51349906-51349762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:169-339
               
               
               Cow position:chr3:2067977-2067806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:169-359
               
               
               Cow position:chr3:55984181-55983986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 56

               
               
               Conread position:169-394
               
               
               Cow position:chr3:1785162-1785385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):46, 128

               
               
               Conread position:169-426
               
               
               Cow position:chr3:26874673-26874415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:169-436
               
               
               Cow position:chr3:20677759-20678020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:169-445
               
               
               Cow position:chr3:116273-116003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):31, 133

               
               
               Conread position:169-448
               
               
               Cow position:chr3:60265171-60265438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):48, 73

               
               
               Conread position:169-454
               
               
               Cow position:chr3:27696897-27697182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:169-491
               
               
               Cow position:chr3:17447532-17447843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:169-525
               
               
               Cow position:chr3:45647763-45647405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 192

               
               
               Conread position:169-525
               
               
               Cow position:chr3:70899973-70899630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:169-530
               
               
               Cow position:chr3:63179937-63179593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):179, 15

               
               
               Conread position:169-535
               
               
               Cow position:chr3:62826536-62826903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:169-535
               
               
               Cow position:chr3:83815705-83816073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 134

               
               
               Conread position:170-535
               
               
               Cow position:chr3:74533431-74533068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:171-296
               
               
               Cow position:chr3:41652457-41652331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:171-418
               
               
               Cow position:chr3:55109532-55109782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):46, 237

               
               
               Conread position:171-436
               
               
               Cow position:chr3:74502244-74502507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 140

               
               
               Conread position:171-528
               
               
               Cow position:chr3:525427-525081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 121

               
               
               Conread position:171-535
               
               
               Cow position:chr3:5100691-5101040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 122

               
               
               Conread position:172-402
               
               
               Cow position:chr3:46541749-46541979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):45, 129

               
               
               Conread position:173-369
               
               
               Cow position:chr3:63177562-63177360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:175-533
               
               
               Cow position:chr3:26218974-26219339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 123

               
               
               Conread position:175-535
               
               
               Cow position:chr3:24935442-24935076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 124

               
               
               Conread position:177-348
               
               
               Cow position:chr3:3472115-3471942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:144
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:177-461
               
               
               Cow position:chr3:59621573-59621848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 118

               
               
               Conread position:177-520
               
               
               Cow position:chr3:58968828-58969161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 120

               
               
               Conread position:179-382
               
               
               Cow position:chr3:84175750-84175957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:179-535
               
               
               Cow position:chr3:75711379-75711039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 117

               
               
               Conread position:181-450
               
               
               Cow position:chr3:10896893-10896634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:181-491
               
               
               Cow position:chr3:11712036-11711718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):36, 282

               
               
               Conread position:181-502
               
               
               Cow position:chr3:23444817-23445136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:184-340
               
               
               Cow position:chr3:70614419-70614574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 54

               
               
               Conread position:189-377
               
               
               Cow position:chr3:12670552-12670741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):112, 29

               
               
               Conread position:190-334
               
               
               Cow position:chr3:478738-478882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):25, 48

               
               
               Conread position:190-533
               
               
               Cow position:chr3:37186888-37186558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):25, 19

               
               
               Conread position:195-535
               
               
               Cow position:chr3:12674986-12675319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:195-535
               
               
               Cow position:chr3:42480675-42480344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 117

               
               
               Conread position:196-430
               
               
               Cow position:chr3:81359051-81359292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 117

               
               
               Conread position:196-471
               
               
               Cow position:chr3:78896703-78896433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):19, 102

               
               
               Conread position:197-535
               
               
               Cow position:chr3:81277637-81277984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:198-351
               
               
               Cow position:chr3:54030335-54030180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:199-535
               
               
               Cow position:chr3:4457018-4457356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:207-435
               
               
               Cow position:chr3:79092347-79092579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 112

               
               
               Conread position:207-439
               
               
               Cow position:chr3:56523401-56523616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:207-533
               
               
               Cow position:chr3:74878544-74878882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 64

               
               
               Conread position:210-535
               
               
               Cow position:chr3:2216410-2216080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 112

               
               
               Conread position:212-521
               
               
               Cow position:chr3:71430165-71430478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 247

               
               
               Conread position:212-535
               
               
               Cow position:chr3:35299707-35299394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):96, 87

               
               
               Conread position:215-446
               
               
               Cow position:chr3:36446682-36446912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 156

               
               
               Conread position:219-535
               
               
               Cow position:chr3:13512718-13513017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):158, 50

               
               
               Conread position:220-535
               
               
               Cow position:chr3:33698762-33698441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 239

               
               
               Conread position:225-461
               
               
               Cow position:chr3:22907702-22907927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 82

               
               
               Conread position:16-445
               
               
               Cow position:chr4:38944004-38944439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:42-382
               
               
               Cow position:chr4:214239-213904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:46-276
               
               
               Cow position:chr4:56395734-56395504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 25

               
               
               Conread position:47-362
               
               
               Cow position:chr4:23190451-23190763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:47-533
               
               
               Cow position:chr4:9444459-9444951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 151

               
               
               Conread position:48-514
               
               
               Cow position:chr4:54455126-54455586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 97

               
               
               Conread position:49-535
               
               
               Cow position:chr4:1015289-1014803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:50-535
               
               
               Cow position:chr4:7964426-7964915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 138

               
               
               Conread position:51-320
               
               
               Cow position:chr4:47125620-47125898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 145

               
               
               Conread position:51-430
               
               
               Cow position:chr4:47041196-47041587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 266

               
               
               Conread position:51-502
               
               
               Cow position:chr4:25356111-25356536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:51-535
               
               
               Cow position:chr4:42673398-42672907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 133

               
               
               Conread position:52-287
               
               
               Cow position:chr4:34983286-34983515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 50

               
               
               Conread position:52-291
               
               
               Cow position:chr4:33838586-33838823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):27, 104

               
               
               Conread position:52-535
               
               
               Cow position:chr4:25197278-25197761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:54-226
               
               
               Cow position:chr4:19496765-19496944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:54-256
               
               
               Cow position:chr4:479587-479780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:54-267
               
               
               Cow position:chr4:42373942-42374155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:54-302
               
               
               Cow position:chr4:60442826-60443074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):17, 92

               
               
               Conread position:55-280
               
               
               Cow position:chr4:39007709-39007495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):162, 27

               
               
               Conread position:55-315
               
               
               Cow position:chr4:47305295-47305028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):22, 141

               
               
               Conread position:55-346
               
               
               Cow position:chr4:46435545-46435245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:55-347
               
               
               Cow position:chr4:45706250-45705967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):86, 54

               
               
               Conread position:55-349
               
               
               Cow position:chr4:69290529-69290819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:55-359
               
               
               Cow position:chr4:44772828-44773138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:55-380
               
               
               Cow position:chr4:22546630-22546951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 109

               
               
               Conread position:55-435
               
               
               Cow position:chr4:21088657-21089038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:55-518
               
               
               Cow position:chr4:13043482-13043024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-535
               
               
               Cow position:chr4:4084897-4085400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:55-535
               
               
               Cow position:chr4:15635233-15635707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:315
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:55-535
               
               
               Cow position:chr4:48152160-48152633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:56-268
               
               
               Cow position:chr4:61887850-61887636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:56-339
               
               
               Cow position:chr4:68456707-68456989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):53, 23

               
               
               Conread position:56-425
               
               
               Cow position:chr4:48104354-48104731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:56-426
               
               
               Cow position:chr4:45250185-45249817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:56-427
               
               
               Cow position:chr4:36290834-36290468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 99

               
               
               Conread position:56-534
               
               
               Cow position:chr4:12034482-12034000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):55, 113

               
               
               Conread position:56-535
               
               
               Cow position:chr4:7286-7762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:329
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:56-535
               
               
               Cow position:chr4:9137497-9137013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:56-535
               
               
               Cow position:chr4:56239652-56240109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:57-305
               
               
               Cow position:chr4:31178035-31177789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 89

               
               
               Conread position:57-332
               
               
               Cow position:chr4:26012623-26012333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:57-337
               
               
               Cow position:chr4:26830930-26830634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:57-530
               
               
               Cow position:chr4:18974637-18974178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:327
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:57-533
               
               
               Cow position:chr4:65825613-65826117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:58-305
               
               
               Cow position:chr4:10558743-10558499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:58-340
               
               
               Cow position:chr4:19199071-19199362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):7, 121

               
               
               Conread position:58-436
               
               
               Cow position:chr4:2681539-2681178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 67

               
               
               Conread position:58-535
               
               
               Cow position:chr4:21065235-21064775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:60-299
               
               
               Cow position:chr4:16221666-16221908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:60-352
               
               
               Cow position:chr4:37991796-37991514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:60-358
               
               
               Cow position:chr4:38822113-38822409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:60-418
               
               
               Cow position:chr4:19119227-19118855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 95

               
               
               Conread position:60-440
               
               
               Cow position:chr4:45685663-45685296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:61-319
               
               
               Cow position:chr4:19431481-19431748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:61-535
               
               
               Cow position:chr4:22101054-22101531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:323
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):50, 133

               
               
               Conread position:62-253
               
               
               Cow position:chr4:22215307-22215496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 94

               
               
               Conread position:62-256
               
               
               Cow position:chr4:50494984-50494783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:62-272
               
               
               Cow position:chr4:13194162-13193964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):154, 20

               
               
               Conread position:62-312
               
               
               Cow position:chr4:18952185-18951928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):22, 86

               
               
               Conread position:62-314
               
               
               Cow position:chr4:44903489-44903248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):154, 20

               
               
               Conread position:62-320
               
               
               Cow position:chr4:60363557-60363295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:62-321
               
               
               Cow position:chr4:38209769-38210030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:62-352
               
               
               Cow position:chr4:59001932-59002217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):47, 109

               
               
               Conread position:62-393
               
               
               Cow position:chr4:26332993-26333323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:62-393
               
               
               Cow position:chr4:26335160-26335490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:62-401
               
               
               Cow position:chr4:54335210-54334865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:62-426
               
               
               Cow position:chr4:20026898-20027260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:62-529
               
               
               Cow position:chr4:47731068-47730604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:62-530
               
               
               Cow position:chr4:3283248-3283708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:62-535
               
               
               Cow position:chr4:21391612-21392068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:62-535
               
               
               Cow position:chr4:59785524-59785052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:62-535
               
               
               Cow position:chr4:62472279-62471804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:63-235
               
               
               Cow position:chr4:56308005-56307835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:63-290
               
               
               Cow position:chr4:18098857-18099084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:63-291
               
               
               Cow position:chr4:60527385-60527157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:63-295
               
               
               Cow position:chr4:68590972-68590750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:63-312
               
               
               Cow position:chr4:54390810-54391059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:63-323
               
               
               Cow position:chr4:65173307-65173047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):46, 91

               
               
               Conread position:63-334
               
               
               Cow position:chr4:17851053-17851318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:63-349
               
               
               Cow position:chr4:8182427-8182720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):15, 93

               
               
               Conread position:63-530
               
               
               Cow position:chr4:62983353-62983812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 172

               
               
               Conread position:63-535
               
               
               Cow position:chr4:13668413-13668880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:63-535
               
               
               Cow position:chr4:51899224-51898738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:63-535
               
               
               Cow position:chr4:54938086-54937622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 74

               
               
               Conread position:64-235
               
               
               Cow position:chr4:61524632-61524465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:64-275
               
               
               Cow position:chr4:561835-561625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:64-383
               
               
               Cow position:chr4:38156890-38157207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:64-533
               
               
               Cow position:chr4:34641519-34641991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:65-398
               
               
               Cow position:chr4:65463310-65463615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:65-533
               
               
               Cow position:chr4:4084254-4084708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 81

               
               
               Conread position:65-533
               
               
               Cow position:chr4:10915629-10916099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 60

               
               
               Conread position:65-535
               
               
               Cow position:chr4:3688130-3687664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:65-535
               
               
               Cow position:chr4:37691108-37691572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 129

               
               
               Conread position:65-535
               
               
               Cow position:chr4:43894610-43895067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:316
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:65-535
               
               
               Cow position:chr4:51851413-51850931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:65-535
               
               
               Cow position:chr4:66172592-66173061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:66-290
               
               
               Cow position:chr4:27521759-27521531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:66-299
               
               
               Cow position:chr4:46404709-46404935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):188, 75

               
               
               Conread position:66-306
               
               
               Cow position:chr4:44854085-44854326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):45, 217

               
               
               Conread position:66-351
               
               
               Cow position:chr4:46566270-46566556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:66-457
               
               
               Cow position:chr4:85896-85505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:66-531
               
               
               Cow position:chr4:27530314-27529853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 43

               
               
               Conread position:66-533
               
               
               Cow position:chr4:3341157-3340689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 257

               
               
               Conread position:66-533
               
               
               Cow position:chr4:11187654-11187195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:319
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):54, 108

               
               
               Conread position:66-535
               
               
               Cow position:chr4:12591018-12591475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 22

               
               
               Conread position:66-535
               
               
               Cow position:chr4:22138012-22138500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 132

               
               
               Conread position:67-311
               
               
               Cow position:chr4:60141327-60141558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:67-427
               
               
               Cow position:chr4:68569443-68569813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 128

               
               
               Conread position:67-530
               
               
               Cow position:chr4:34209136-34208669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:67-533
               
               
               Cow position:chr4:22344826-22345277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:68-360
               
               
               Cow position:chr4:60719292-60719008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:68-436
               
               
               Cow position:chr4:20147385-20147016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:68-492
               
               
               Cow position:chr4:59277274-59277700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 171

               
               
               Conread position:68-497
               
               
               Cow position:chr4:16762519-16762957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):87, 43

               
               
               Conread position:68-506
               
               
               Cow position:chr4:13693476-13693912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:68-535
               
               
               Cow position:chr4:11871713-11872176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:68-535
               
               
               Cow position:chr4:19700307-19699835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 185

               
               
               Conread position:68-535
               
               
               Cow position:chr4:22236285-22236739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:69-282
               
               
               Cow position:chr4:69497312-69497101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):143, 75

               
               
               Conread position:69-527
               
               
               Cow position:chr4:62920683-62921113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):238, 39

               
               
               Conread position:69-535
               
               
               Cow position:chr4:19435448-19434997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 63

               
               
               Conread position:70-489
               
               
               Cow position:chr4:38935556-38935141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 85

               
               
               Conread position:70-530
               
               
               Cow position:chr4:53126295-53125880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:320
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):145, 39

               
               
               Conread position:71-296
               
               
               Cow position:chr4:19333582-19333358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):7, 72

               
               
               Conread position:71-339
               
               
               Cow position:chr4:48423066-48422805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):20, 63

               
               
               Conread position:71-398
               
               
               Cow position:chr4:34699847-34700169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:71-535
               
               
               Cow position:chr4:12031046-12030575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 124

               
               
               Conread position:72-240
               
               
               Cow position:chr4:19420559-19420729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:72-529
               
               
               Cow position:chr4:22009866-22010317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:73-235
               
               
               Cow position:chr4:28854081-28854242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:73-348
               
               
               Cow position:chr4:11969649-11969384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:73-366
               
               
               Cow position:chr4:69169844-69169556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:73-380
               
               
               Cow position:chr4:37732284-37732596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 240

               
               
               Conread position:73-397
               
               
               Cow position:chr4:21874373-21874044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:73-402
               
               
               Cow position:chr4:54871828-54872162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):39, 121

               
               
               Conread position:73-476
               
               
               Cow position:chr4:13344731-13344337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:73-533
               
               
               Cow position:chr4:19597137-19597575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:73-533
               
               
               Cow position:chr4:51728269-51727821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:73-535
               
               
               Cow position:chr4:31136950-31136491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:73-535
               
               
               Cow position:chr4:33970710-33971161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:73-535
               
               
               Cow position:chr4:46061143-46060682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:73-535
               
               
               Cow position:chr4:68234158-68233715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 57

               
               
               Conread position:74-255
               
               
               Cow position:chr4:62794162-62794351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:74-291
               
               
               Cow position:chr4:43916487-43916265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:74-461
               
               
               Cow position:chr4:19407797-19408194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:75-261
               
               
               Cow position:chr4:47048307-47048124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):141, 66

               
               
               Conread position:75-294
               
               
               Cow position:chr4:23656164-23655947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:75-374
               
               
               Cow position:chr4:46136942-46136644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:75-426
               
               
               Cow position:chr4:47262730-47262373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:75-513
               
               
               Cow position:chr4:26659493-26659064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:76-308
               
               
               Cow position:chr4:48381582-48381343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:76-393
               
               
               Cow position:chr4:19578575-19578277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):139, 46

               
               
               Conread position:76-402
               
               
               Cow position:chr4:68430340-68430009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):35, 123

               
               
               Conread position:76-530
               
               
               Cow position:chr4:34310273-34310714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 52

               
               
               Conread position:79-359
               
               
               Cow position:chr4:19102687-19102977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):32, 206

               
               
               Conread position:79-397
               
               
               Cow position:chr4:52831826-52832148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:79-445
               
               
               Cow position:chr4:3421813-3421449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:79-535
               
               
               Cow position:chr4:46527193-46526735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:80-535
               
               
               Cow position:chr4:48486184-48485729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 75

               
               
               Conread position:81-266
               
               
               Cow position:chr4:51083153-51083336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 66

               
               
               Conread position:81-282
               
               
               Cow position:chr4:41907395-41907596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):28, 88

               
               
               Conread position:81-393
               
               
               Cow position:chr4:25354715-25354407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:81-413
               
               
               Cow position:chr4:37313354-37313024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:81-512
               
               
               Cow position:chr4:12127452-12127883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 77

               
               
               Conread position:81-535
               
               
               Cow position:chr4:14153303-14152810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 405

               
               
               Conread position:81-535
               
               
               Cow position:chr4:37915151-37915593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:81-535
               
               
               Cow position:chr4:53134784-53134347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:312
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:82-412
               
               
               Cow position:chr4:61313013-61313353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 240

               
               
               Conread position:82-529
               
               
               Cow position:chr4:13590273-13589833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:82-533
               
               
               Cow position:chr4:34631093-34630640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 312

               
               
               Conread position:84-281
               
               
               Cow position:chr4:13995572-13995374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 104

               
               
               Conread position:86-372
               
               
               Cow position:chr4:54789825-54789534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:87-534
               
               
               Cow position:chr4:23444857-23445314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:88-299
               
               
               Cow position:chr4:34653695-34653900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:89-441
               
               
               Cow position:chr4:54478735-54479078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 154

               
               
               Conread position:89-514
               
               
               Cow position:chr4:21531461-21531883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 152

               
               
               Conread position:89-535
               
               
               Cow position:chr4:45775151-45775605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:309
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):22, 347

               
               
               Conread position:89-535
               
               
               Cow position:chr4:46550568-46550120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 241

               
               
               Conread position:90-317
               
               
               Cow position:chr4:60506454-60506226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):74, 48

               
               
               Conread position:91-393
               
               
               Cow position:chr4:54171802-54171501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:91-444
               
               
               Cow position:chr4:59372114-59372449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:94-535
               
               
               Cow position:chr4:57584065-57584492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 82

               
               
               Conread position:97-376
               
               
               Cow position:chr4:53674013-53673723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:100-495
               
               
               Cow position:chr4:19549164-19548773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:104-383
               
               
               Cow position:chr4:12901394-12901670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):78, 29

               
               
               Conread position:104-402
               
               
               Cow position:chr4:25537711-25537410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 57

               
               
               Conread position:104-418
               
               
               Cow position:chr4:6659651-6659967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):73, 86

               
               
               Conread position:108-530
               
               
               Cow position:chr4:46476781-46477198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 205

               
               
               Conread position:109-354
               
               
               Cow position:chr4:61188710-61188957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:109-459
               
               
               Cow position:chr4:5756588-5756230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 81

               
               
               Conread position:109-511
               
               
               Cow position:chr4:6653880-6653496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):108, 52

               
               
               Conread position:109-533
               
               
               Cow position:chr4:7571566-7571147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 43

               
               
               Conread position:109-533
               
               
               Cow position:chr4:14743411-14742997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:285
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):67, 81

               
               
               Conread position:109-535
               
               
               Cow position:chr4:19097447-19097028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:110-418
               
               
               Cow position:chr4:40918457-40918135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:116-535
               
               
               Cow position:chr4:23600318-23599906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 52

               
               
               Conread position:123-535
               
               
               Cow position:chr4:42481327-42480922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):22, 56

               
               
               Conread position:128-530
               
               
               Cow position:chr4:53100945-53100547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 227

               
               
               Conread position:133-364
               
               
               Cow position:chr4:8898-9128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):85, 48

               
               
               Conread position:133-399
               
               
               Cow position:chr4:48396660-48396926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):82, 168

               
               
               Conread position:133-529
               
               
               Cow position:chr4:10379249-10378840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 383

               
               
               Conread position:140-535
               
               
               Cow position:chr4:44838764-44839149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:141-527
               
               
               Cow position:chr4:42921732-42922102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:143-328
               
               
               Cow position:chr4:65131326-65131514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:143-522
               
               
               Cow position:chr4:7808699-7808327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 117

               
               
               Conread position:155-334
               
               
               Cow position:chr4:54541524-54541706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:155-522
               
               
               Cow position:chr4:1495295-1495651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):143, 110

               
               
               Conread position:157-344
               
               
               Cow position:chr4:61235092-61235278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):24, 62

               
               
               Conread position:162-525
               
               
               Cow position:chr4:49089883-49089540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):55, 32

               
               
               Conread position:162-535
               
               
               Cow position:chr4:19314123-19313741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):11, 303

               
               
               Conread position:165-525
               
               
               Cow position:chr4:62771815-62772189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):16, 134

               
               
               Conread position:166-535
               
               
               Cow position:chr4:17111771-17112141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 79

               
               
               Conread position:167-294
               
               
               Cow position:chr4:26901429-26901301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:167-334
               
               
               Cow position:chr4:42176372-42176537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 130

               
               
               Conread position:167-412
               
               
               Cow position:chr4:30169728-30169968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):179, 112

               
               
               Conread position:167-452
               
               
               Cow position:chr4:17774248-17774537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 272

               
               
               Conread position:167-535
               
               
               Cow position:chr4:12903923-12903554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 250

               
               
               Conread position:167-535
               
               
               Cow position:chr4:20139415-20139783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 56

               
               
               Conread position:167-535
               
               
               Cow position:chr4:24001865-24002233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:167-535
               
               
               Cow position:chr4:34337170-34337526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:167-535
               
               
               Cow position:chr4:48961384-48961754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 71

               
               
               Conread position:168-340
               
               
               Cow position:chr4:20504986-20505153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:168-354
               
               
               Cow position:chr4:49826352-49826166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 158

               
               
               Conread position:168-416
               
               
               Cow position:chr4:48409168-48409415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:168-516
               
               
               Cow position:chr4:61897434-61897784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 136

               
               
               Conread position:169-305
               
               
               Cow position:chr4:36744678-36744543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:169-400
               
               
               Cow position:chr4:44449409-44449639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):49, 69

               
               
               Conread position:169-534
               
               
               Cow position:chr4:9815248-9815615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:171-398
               
               
               Cow position:chr4:39609815-39609601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):201, 41

               
               
               Conread position:171-401
               
               
               Cow position:chr4:19098570-19098334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 185

               
               
               Conread position:171-527
               
               
               Cow position:chr4:21010-20667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):46, 131

               
               
               Conread position:171-534
               
               
               Cow position:chr4:41300900-41301254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):177, 19

               
               
               Conread position:171-534
               
               
               Cow position:chr4:65650036-65650388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:171-535
               
               
               Cow position:chr4:44496468-44496120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 38

               
               
               Conread position:171-535
               
               
               Cow position:chr4:46591765-46591398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 286

               
               
               Conread position:172-531
               
               
               Cow position:chr4:25984317-25983967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):43, 129

               
               
               Conread position:172-535
               
               
               Cow position:chr4:3251448-3251800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 175

               
               
               Conread position:173-535
               
               
               Cow position:chr4:33433159-33433522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 281

               
               
               Conread position:174-397
               
               
               Cow position:chr4:59101418-59101646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:177-530
               
               
               Cow position:chr4:63095982-63096334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:177-534
               
               
               Cow position:chr4:38952645-38952296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 122

               
               
               Conread position:177-535
               
               
               Cow position:chr4:5460769-5461117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):40, 178

               
               
               Conread position:177-535
               
               
               Cow position:chr4:45644226-45644577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:179-509
               
               
               Cow position:chr4:37344339-37344670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):29, 12

               
               
               Conread position:179-535
               
               
               Cow position:chr4:21257034-21257393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 184

               
               
               Conread position:181-502
               
               
               Cow position:chr4:41602937-41602618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 152

               
               
               Conread position:188-518
               
               
               Cow position:chr4:21232793-21233118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 101

               
               
               Conread position:190-515
               
               
               Cow position:chr4:65432229-65431902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 201

               
               
               Conread position:192-529
               
               
               Cow position:chr4:620058-620411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 46

               
               
               Conread position:195-534
               
               
               Cow position:chr4:23854254-23853941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):23, 96

               
               
               Conread position:198-348
               
               
               Cow position:chr4:19493626-19493473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:198-445
               
               
               Cow position:chr4:11332168-11331914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:203-382
               
               
               Cow position:chr4:67466788-67466607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:203-535
               
               
               Cow position:chr4:24744340-24744677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 257

               
               
               Conread position:203-535
               
               
               Cow position:chr4:25806965-25806635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 105

               
               
               Conread position:203-535
               
               
               Cow position:chr4:33612293-33612627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:206-535
               
               
               Cow position:chr4:8947458-8947140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:208-535
               
               
               Cow position:chr4:27540680-27540357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 127

               
               
               Conread position:208-535
               
               
               Cow position:chr4:39231460-39231787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 144

               
               
               Conread position:210-535
               
               
               Cow position:chr4:570851-570536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):6, 134

               
               
               Conread position:215-517
               
               
               Cow position:chr4:44956129-44956435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):70, 89

               
               
               Conread position:220-417
               
               
               Cow position:chr4:47047942-47047743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:227-461
               
               
               Cow position:chr4:3689745-3689514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:230-363
               
               
               Cow position:chr4:2096360-2096224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:238-531
               
               
               Cow position:chr4:25370143-25369856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):165, 52

               
               
               Conread position:244-504
               
               
               Cow position:chr4:19463520-19463258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 211

               
               
               Conread position:252-400
               
               
               Cow position:chr4:48165338-48165481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:255-535
               
               
               Cow position:chr4:19438478-19438194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 211

               
               
               Conread position:16-535
               
               
               Cow position:chr5:30276970-30276464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 23

               
               
               Conread position:18-525
               
               
               Cow position:chr5:40152770-40152254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:21-245
               
               
               Cow position:chr5:21721194-21721414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):194, 29

               
               
               Conread position:32-509
               
               
               Cow position:chr5:50942886-50943359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:42-382
               
               
               Cow position:chr5:63241239-63240893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:43-482
               
               
               Cow position:chr5:44028053-44028479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 29

               
               
               Conread position:45-245
               
               
               Cow position:chr5:20345794-20345593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:45-288
               
               
               Cow position:chr5:2240731-2240976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):66, 217

               
               
               Conread position:45-535
               
               
               Cow position:chr5:64139814-64139332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:46-525
               
               
               Cow position:chr5:65753117-65752635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 50

               
               
               Conread position:47-256
               
               
               Cow position:chr5:6876712-6876923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:47-535
               
               
               Cow position:chr5:55966617-55967114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 269

               
               
               Conread position:51-268
               
               
               Cow position:chr5:15991392-15991606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:51-285
               
               
               Cow position:chr5:26167671-26167437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:51-514
               
               
               Cow position:chr5:35969791-35969333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:52-274
               
               
               Cow position:chr5:49821681-49821455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:52-343
               
               
               Cow position:chr5:49341784-49342090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):54, 296

               
               
               Conread position:52-533
               
               
               Cow position:chr5:42845350-42845829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:332
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):129, 28

               
               
               Conread position:53-449
               
               
               Cow position:chr5:19335529-19335939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:54-240
               
               
               Cow position:chr5:66287190-66287006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 36

               
               
               Conread position:54-290
               
               
               Cow position:chr5:17828229-17828468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:54-456
               
               
               Cow position:chr5:30092381-30092782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):154, 27

               
               
               Conread position:54-514
               
               
               Cow position:chr5:48154216-48154682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:320
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:54-534
               
               
               Cow position:chr5:57074088-57074565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:55-232
               
               
               Cow position:chr5:32976007-32975827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):86, 16

               
               
               Conread position:55-289
               
               
               Cow position:chr5:52136806-52137042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-305
               
               
               Cow position:chr5:60514778-60515031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:55-309
               
               
               Cow position:chr5:56549617-56549356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 141

               
               
               Conread position:55-359
               
               
               Cow position:chr5:63627294-63627584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):291, 26

               
               
               Conread position:55-372
               
               
               Cow position:chr5:6438779-6439105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:55-460
               
               
               Cow position:chr5:35246862-35247271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:55-515
               
               
               Cow position:chr5:11426988-11427452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 106

               
               
               Conread position:55-534
               
               
               Cow position:chr5:36868983-36868515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:318
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:56-277
               
               
               Cow position:chr5:35190351-35190134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:56-441
               
               
               Cow position:chr5:64026764-64027149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:56-460
               
               
               Cow position:chr5:66582218-66581803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 140

               
               
               Conread position:56-530
               
               
               Cow position:chr5:16893532-16894002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:56-535
               
               
               Cow position:chr5:35826846-35826359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:56-535
               
               
               Cow position:chr5:38833361-38832886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 85

               
               
               Conread position:57-304
               
               
               Cow position:chr5:33273941-33273693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:57-310
               
               
               Cow position:chr5:24069658-24069382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 232

               
               
               Conread position:57-334
               
               
               Cow position:chr5:26548896-26549174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 90

               
               
               Conread position:57-480
               
               
               Cow position:chr5:59631731-59631306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:57-534
               
               
               Cow position:chr5:12322567-12323032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 5

               
               
               Conread position:58-275
               
               
               Cow position:chr5:34288009-34288224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:59-428
               
               
               Cow position:chr5:49474310-49474670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):52, 87

               
               
               Conread position:60-277
               
               
               Cow position:chr5:51289359-51289567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 5

               
               
               Conread position:61-535
               
               
               Cow position:chr5:26467868-26467389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:62-250
               
               
               Cow position:chr5:2355760-2355571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:62-311
               
               
               Cow position:chr5:34914815-34915061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:62-315
               
               
               Cow position:chr5:39815260-39815504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:62-337
               
               
               Cow position:chr5:30247284-30247555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 135

               
               
               Conread position:62-380
               
               
               Cow position:chr5:61914809-61914490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:62-397
               
               
               Cow position:chr5:30233148-30232802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:62-434
               
               
               Cow position:chr5:991714-991332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-434
               
               
               Cow position:chr5:44446632-44447002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:62-534
               
               
               Cow position:chr5:22242533-22243015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 70

               
               
               Conread position:62-535
               
               
               Cow position:chr5:15479370-15478882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:62-535
               
               
               Cow position:chr5:35208504-35208030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 132

               
               
               Conread position:62-535
               
               
               Cow position:chr5:47602048-47601586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:63-253
               
               
               Cow position:chr5:56525468-56525664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 134

               
               
               Conread position:63-286
               
               
               Cow position:chr5:65552481-65552696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:63-334
               
               
               Cow position:chr5:8736037-8736322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:63-459
               
               
               Cow position:chr5:48867504-48867911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 141

               
               
               Conread position:63-533
               
               
               Cow position:chr5:69338053-69337603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:64-248
               
               
               Cow position:chr5:49207090-49207274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:64-315
               
               
               Cow position:chr5:17105084-17104839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:64-427
               
               
               Cow position:chr5:12434774-12434409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 92

               
               
               Conread position:64-457
               
               
               Cow position:chr5:57767747-57768130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:64-535
               
               
               Cow position:chr5:32975320-32975782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:64-535
               
               
               Cow position:chr5:66972668-66972171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:65-251
               
               
               Cow position:chr5:29895409-29895221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:65-286
               
               
               Cow position:chr5:26147827-26147606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 26

               
               
               Conread position:65-413
               
               
               Cow position:chr5:42670635-42670969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:65-461
               
               
               Cow position:chr5:56014962-56014573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:65-525
               
               
               Cow position:chr5:43858180-43858649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:65-530
               
               
               Cow position:chr5:21829102-21828638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 76

               
               
               Conread position:65-533
               
               
               Cow position:chr5:63647239-63647696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:65-535
               
               
               Cow position:chr5:24995981-24996455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 68

               
               
               Conread position:65-535
               
               
               Cow position:chr5:47316737-47317199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 68

               
               
               Conread position:66-319
               
               
               Cow position:chr5:74039769-74040019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:66-431
               
               
               Cow position:chr5:33560499-33560865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:66-445
               
               
               Cow position:chr5:42050781-42050406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 85

               
               
               Conread position:66-449
               
               
               Cow position:chr5:65967503-65967877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:67-245
               
               
               Cow position:chr5:3677965-3677775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:67-379
               
               
               Cow position:chr5:19752537-19752226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:67-402
               
               
               Cow position:chr5:12557051-12557394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:67-497
               
               
               Cow position:chr5:30178268-30178703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:294
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-533
               
               
               Cow position:chr5:55942142-55942627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:68-252
               
               
               Cow position:chr5:70591777-70591603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):145, 41

               
               
               Conread position:68-308
               
               
               Cow position:chr5:50824819-50824585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:68-353
               
               
               Cow position:chr5:20288023-20288314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 284

               
               
               Conread position:68-445
               
               
               Cow position:chr5:46512533-46512908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:68-525
               
               
               Cow position:chr5:66339308-66338863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:69-433
               
               
               Cow position:chr5:22667304-22666960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:69-445
               
               
               Cow position:chr5:49920157-49919785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:69-495
               
               
               Cow position:chr5:5856095-5855689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 95

               
               
               Conread position:71-277
               
               
               Cow position:chr5:37842047-37842255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:71-390
               
               
               Cow position:chr5:34922731-34923040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):38, 146

               
               
               Conread position:71-493
               
               
               Cow position:chr5:7044474-7044899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:71-530
               
               
               Cow position:chr5:19278472-19278918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:71-530
               
               
               Cow position:chr5:45845458-45845921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:71-530
               
               
               Cow position:chr5:52164942-52165408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:72-288
               
               
               Cow position:chr5:51246906-51247118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):140, 37

               
               
               Conread position:72-534
               
               
               Cow position:chr5:62172629-62172188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 39

               
               
               Conread position:73-254
               
               
               Cow position:chr5:61201991-61201806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:73-280
               
               
               Cow position:chr5:18295667-18295460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 36

               
               
               Conread position:73-312
               
               
               Cow position:chr5:69383481-69383246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-313
               
               
               Cow position:chr5:39036012-39035770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):39, 123

               
               
               Conread position:73-325
               
               
               Cow position:chr5:29460432-29460186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 154

               
               
               Conread position:73-337
               
               
               Cow position:chr5:22795436-22795178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:73-364
               
               
               Cow position:chr5:59626742-59627038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-412
               
               
               Cow position:chr5:71845696-71846036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:73-440
               
               
               Cow position:chr5:57101567-57101916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 36

               
               
               Conread position:73-450
               
               
               Cow position:chr5:7057167-7057550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 127

               
               
               Conread position:73-457
               
               
               Cow position:chr5:3582785-3582415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:73-486
               
               
               Cow position:chr5:34976609-34977021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):38, 132

               
               
               Conread position:73-514
               
               
               Cow position:chr5:26262455-26262883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:73-529
               
               
               Cow position:chr5:5257057-5257522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:73-530
               
               
               Cow position:chr5:35685163-35684708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 37

               
               
               Conread position:73-533
               
               
               Cow position:chr5:66366738-66366302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:73-535
               
               
               Cow position:chr5:9893895-9894358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:73-535
               
               
               Cow position:chr5:17086788-17087261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:73-535
               
               
               Cow position:chr5:20128284-20127823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 122

               
               
               Conread position:73-535
               
               
               Cow position:chr5:21617685-21617224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:73-535
               
               
               Cow position:chr5:28224672-28224224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:73-535
               
               
               Cow position:chr5:65941020-65941484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:74-233
               
               
               Cow position:chr5:4824382-4824216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:74-382
               
               
               Cow position:chr5:70271096-70270783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:74-454
               
               
               Cow position:chr5:55956139-55955755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:74-533
               
               
               Cow position:chr5:64321990-64321519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 245

               
               
               Conread position:75-370
               
               
               Cow position:chr5:52728783-52729086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:75-535
               
               
               Cow position:chr5:37255105-37255587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:312
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:76-290
               
               
               Cow position:chr5:60948359-60948144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:76-415
               
               
               Cow position:chr5:12902146-12901800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:77-535
               
               
               Cow position:chr5:5110833-5111308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 237

               
               
               Conread position:79-277
               
               
               Cow position:chr5:44722289-44722488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:79-289
               
               
               Cow position:chr5:46704078-46704287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:79-295
               
               
               Cow position:chr5:60523951-60523739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:80-425
               
               
               Cow position:chr5:65764906-65765253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:80-535
               
               
               Cow position:chr5:55756190-55756673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 109

               
               
               Conread position:81-345
               
               
               Cow position:chr5:69099941-69099675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 65

               
               
               Conread position:81-396
               
               
               Cow position:chr5:35228922-35229223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 104

               
               
               Conread position:81-397
               
               
               Cow position:chr5:56548788-56548481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:81-447
               
               
               Cow position:chr5:12760898-12761263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 114

               
               
               Conread position:81-534
               
               
               Cow position:chr5:30253962-30253515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:81-535
               
               
               Cow position:chr5:11229449-11229905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:81-535
               
               
               Cow position:chr5:39447303-39447763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 255

               
               
               Conread position:81-535
               
               
               Cow position:chr5:40109706-40109270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 75

               
               
               Conread position:82-305
               
               
               Cow position:chr5:5017592-5017370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 84

               
               
               Conread position:82-442
               
               
               Cow position:chr5:25035033-25035384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 160

               
               
               Conread position:82-461
               
               
               Cow position:chr5:30628932-30629319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:83-392
               
               
               Cow position:chr5:31475904-31475592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:85-505
               
               
               Cow position:chr5:50600264-50599857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:85-533
               
               
               Cow position:chr5:56071076-56070624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 61

               
               
               Conread position:85-534
               
               
               Cow position:chr5:28302538-28302970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 24

               
               
               Conread position:87-515
               
               
               Cow position:chr5:6503660-6504090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 93

               
               
               Conread position:88-365
               
               
               Cow position:chr5:61007279-61007001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):84, 52

               
               
               Conread position:88-400
               
               
               Cow position:chr5:17554820-17555127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 58

               
               
               Conread position:88-535
               
               
               Cow position:chr5:64523649-64524111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:313
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:89-448
               
               
               Cow position:chr5:53947113-53946742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:89-460
               
               
               Cow position:chr5:45397779-45397418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:89-535
               
               
               Cow position:chr5:57328011-57327557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 72

               
               
               Conread position:90-283
               
               
               Cow position:chr5:54312814-54312619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:90-339
               
               
               Cow position:chr5:66466526-66466281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:90-530
               
               
               Cow position:chr5:12351599-12352008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:94-495
               
               
               Cow position:chr5:69461541-69461144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 74

               
               
               Conread position:99-290
               
               
               Cow position:chr5:38169094-38168905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 62

               
               
               Conread position:101-487
               
               
               Cow position:chr5:17767954-17768326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:104-334
               
               
               Cow position:chr5:73253601-73253383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:104-472
               
               
               Cow position:chr5:64697984-64697613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 137

               
               
               Conread position:104-528
               
               
               Cow position:chr5:48829351-48828923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 57

               
               
               Conread position:104-535
               
               
               Cow position:chr5:47703929-47704366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 86

               
               
               Conread position:104-535
               
               
               Cow position:chr5:64137454-64137020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:104-535
               
               
               Cow position:chr5:68872391-68871961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 86

               
               
               Conread position:109-343
               
               
               Cow position:chr5:49501627-49501868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 200

               
               
               Conread position:109-534
               
               
               Cow position:chr5:45170549-45170132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):73, 82

               
               
               Conread position:114-530
               
               
               Cow position:chr5:7193599-7193206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 28

               
               
               Conread position:116-340
               
               
               Cow position:chr5:66531099-66530879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):196, 27

               
               
               Conread position:116-410
               
               
               Cow position:chr5:60183984-60183691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:120-494
               
               
               Cow position:chr5:7755383-7755742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:127-533
               
               
               Cow position:chr5:26093991-26094398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:133-340
               
               
               Cow position:chr5:61102885-61102676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):85, 135

               
               
               Conread position:133-354
               
               
               Cow position:chr5:35982565-35982793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:133-529
               
               
               Cow position:chr5:27306473-27306093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:284
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:137-417
               
               
               Cow position:chr5:53710524-53710811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 55

               
               
               Conread position:140-535
               
               
               Cow position:chr5:4709990-4710373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:140-535
               
               
               Cow position:chr5:43457369-43457747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:140-535
               
               
               Cow position:chr5:50533222-50533615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 62

               
               
               Conread position:141-418
               
               
               Cow position:chr5:19524059-19523779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:142-473
               
               
               Cow position:chr5:30949759-30950088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:143-357
               
               
               Cow position:chr5:40242203-40241985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 70

               
               
               Conread position:143-361
               
               
               Cow position:chr5:45419980-45420195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:143-392
               
               
               Cow position:chr5:1087043-1087288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:146-311
               
               
               Cow position:chr5:9233832-9233999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:149-305
               
               
               Cow position:chr5:74974174-74974331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 149

               
               
               Conread position:154-348
               
               
               Cow position:chr5:67118568-67118372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:157-535
               
               
               Cow position:chr5:37814772-37814392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 229

               
               
               Conread position:158-530
               
               
               Cow position:chr5:29903378-29903748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 141

               
               
               Conread position:158-534
               
               
               Cow position:chr5:75436743-75437127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:158-535
               
               
               Cow position:chr5:7723809-7723441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 133

               
               
               Conread position:162-535
               
               
               Cow position:chr5:21039842-21040205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):7, 60

               
               
               Conread position:163-362
               
               
               Cow position:chr5:26150283-26150483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:167-350
               
               
               Cow position:chr5:43408223-43408407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 5

               
               
               Conread position:167-535
               
               
               Cow position:chr5:6045431-6045055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 295

               
               
               Conread position:168-288
               
               
               Cow position:chr5:75228065-75228186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:168-364
               
               
               Cow position:chr5:1461223-1461023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:168-514
               
               
               Cow position:chr5:45804194-45803851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:168-520
               
               
               Cow position:chr5:56467823-56467484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):182, 13

               
               
               Conread position:168-525
               
               
               Cow position:chr5:15721940-15722275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:257
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):51, 121

               
               
               Conread position:168-534
               
               
               Cow position:chr5:50821917-50821558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 121

               
               
               Conread position:168-535
               
               
               Cow position:chr5:4166774-4166439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:169-290
               
               
               Cow position:chr5:35647476-35647354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-347
               
               
               Cow position:chr5:56517237-56517057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:169-356
               
               
               Cow position:chr5:56338888-56339074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):46, 129

               
               
               Conread position:169-395
               
               
               Cow position:chr5:62378913-62378696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):46, 66

               
               
               Conread position:169-402
               
               
               Cow position:chr5:54375369-54375609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):48, 78

               
               
               Conread position:169-412
               
               
               Cow position:chr5:7698133-7697893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:169-450
               
               
               Cow position:chr5:56877615-56877338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:169-496
               
               
               Cow position:chr5:23168693-23169010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 205

               
               
               Conread position:169-520
               
               
               Cow position:chr5:41545760-41546110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:171-397
               
               
               Cow position:chr5:55019423-55019196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:171-418
               
               
               Cow position:chr5:26476887-26477130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:171-431
               
               
               Cow position:chr5:63426874-63427137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:171-515
               
               
               Cow position:chr5:64758636-64758973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):44, 143

               
               
               Conread position:171-530
               
               
               Cow position:chr5:8820882-8821238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 74

               
               
               Conread position:171-535
               
               
               Cow position:chr5:43992455-43992094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 122

               
               
               Conread position:171-535
               
               
               Cow position:chr5:54350230-54350592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:172-459
               
               
               Cow position:chr5:39875254-39874965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 116

               
               
               Conread position:172-535
               
               
               Cow position:chr5:15598108-15598465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:174-522
               
               
               Cow position:chr5:63964037-63964391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):44, 122

               
               
               Conread position:177-295
               
               
               Cow position:chr5:12169644-12169762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:177-314
               
               
               Cow position:chr5:9170458-9170593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:177-494
               
               
               Cow position:chr5:48009734-48010036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:181-535
               
               
               Cow position:chr5:58793486-58793846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:184-533
               
               
               Cow position:chr5:32696705-32697042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 218

               
               
               Conread position:185-530
               
               
               Cow position:chr5:31640542-31640201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 156

               
               
               Conread position:190-460
               
               
               Cow position:chr5:46425743-46426011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 141

               
               
               Conread position:196-370
               
               
               Cow position:chr5:67212467-67212286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:197-445
               
               
               Cow position:chr5:65883666-65883921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 102

               
               
               Conread position:209-504
               
               
               Cow position:chr5:9390646-9390336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 110

               
               
               Conread position:210-400
               
               
               Cow position:chr5:35126147-35125953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:210-432
               
               
               Cow position:chr5:45273409-45273633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):6, 88

               
               
               Conread position:210-460
               
               
               Cow position:chr5:36255165-36255420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 162

               
               
               Conread position:210-535
               
               
               Cow position:chr5:65601549-65601229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:212-535
               
               
               Cow position:chr5:9089934-9090254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 85

               
               
               Conread position:216-445
               
               
               Cow position:chr5:31144702-31144932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:218-535
               
               
               Cow position:chr5:34638967-34638654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 91

               
               
               Conread position:222-533
               
               
               Cow position:chr5:27155096-27154793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 77

               
               
               Conread position:223-422
               
               
               Cow position:chr5:50799612-50799418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):84, 60

               
               
               Conread position:223-535
               
               
               Cow position:chr5:32140630-32140936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):88, 80

               
               
               Conread position:227-489
               
               
               Cow position:chr5:6670119-6670382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):79, 69

               
               
               Conread position:238-530
               
               
               Cow position:chr5:64823248-64823539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:245-535
               
               
               Cow position:chr5:3627096-3627399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 64

               
               
               Conread position:251-533
               
               
               Cow position:chr5:34916181-34915913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 46

               
               
               Conread position:252-521
               
               
               Cow position:chr5:60126422-60126156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 154

               
               
               Conread position:17-475
               
               
               Cow position:chr6:46282698-46283159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:34-340
               
               
               Cow position:chr6:50504742-50504429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):13, 114

               
               
               Conread position:39-284
               
               
               Cow position:chr6:23938327-23938091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:39-525
               
               
               Cow position:chr6:31261274-31260780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:332
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:39-533
               
               
               Cow position:chr6:47520331-47519836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:41-348
               
               
               Cow position:chr6:67728650-67728338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:42-306
               
               
               Cow position:chr6:43787632-43787903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:43-340
               
               
               Cow position:chr6:47540567-47540871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):68, 152

               
               
               Conread position:45-340
               
               
               Cow position:chr6:32453660-32453362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:46-250
               
               
               Cow position:chr6:37994474-37994273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:49-535
               
               
               Cow position:chr6:6063026-6063496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:50-533
               
               
               Cow position:chr6:19402111-19401647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):62, 94

               
               
               Conread position:50-534
               
               
               Cow position:chr6:10176031-10176517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 125

               
               
               Conread position:51-381
               
               
               Cow position:chr6:37395137-37395475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:51-535
               
               
               Cow position:chr6:26728278-26728743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 97

               
               
               Conread position:51-535
               
               
               Cow position:chr6:32122159-32121694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:52-235
               
               
               Cow position:chr6:7291573-7291395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:52-303
               
               
               Cow position:chr6:44636252-44636487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:52-339
               
               
               Cow position:chr6:1475601-1475316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:52-418
               
               
               Cow position:chr6:62370924-62371285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 13

               
               
               Conread position:53-535
               
               
               Cow position:chr6:48282258-48281778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 141

               
               
               Conread position:54-293
               
               
               Cow position:chr6:12761542-12761301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:54-319
               
               
               Cow position:chr6:58459976-58459718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:54-337
               
               
               Cow position:chr6:21293238-21293518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:54-339
               
               
               Cow position:chr6:30024139-30023870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):163, 89

               
               
               Conread position:54-378
               
               
               Cow position:chr6:24536266-24536606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:54-436
               
               
               Cow position:chr6:35726351-35725973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:54-535
               
               
               Cow position:chr6:64432195-64431722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:55-320
               
               
               Cow position:chr6:61824666-61824410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):163, 23

               
               
               Conread position:55-360
               
               
               Cow position:chr6:3351289-3350973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:55-363
               
               
               Cow position:chr6:53145419-53145732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):56, 140

               
               
               Conread position:55-445
               
               
               Cow position:chr6:19754815-19755204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 141

               
               
               Conread position:55-457
               
               
               Cow position:chr6:60784130-60783727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-521
               
               
               Cow position:chr6:67456997-67456500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:336
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:55-535
               
               
               Cow position:chr6:36203082-36202611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:56-282
               
               
               Cow position:chr6:5601958-5601735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:56-340
               
               
               Cow position:chr6:62056873-62056588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:56-371
               
               
               Cow position:chr6:51529930-51530243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):108, 53

               
               
               Conread position:56-392
               
               
               Cow position:chr6:33510046-33509712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:56-529
               
               
               Cow position:chr6:61631345-61631830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 114

               
               
               Conread position:56-533
               
               
               Cow position:chr6:33302655-33302195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:334
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):56, 6

               
               
               Conread position:56-533
               
               
               Cow position:chr6:54365067-54365538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:56-535
               
               
               Cow position:chr6:8637526-8637058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 26

               
               
               Conread position:57-359
               
               
               Cow position:chr6:28972772-28973080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 128

               
               
               Conread position:57-392
               
               
               Cow position:chr6:5330675-5330336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:57-434
               
               
               Cow position:chr6:6965139-6965507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:57-446
               
               
               Cow position:chr6:62670134-62669742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:279
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):31, 145

               
               
               Conread position:57-522
               
               
               Cow position:chr6:67187934-67187487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:300
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):124, 16

               
               
               Conread position:57-530
               
               
               Cow position:chr6:18080259-18080726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:308
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:57-535
               
               
               Cow position:chr6:52478154-52478644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:58-410
               
               
               Cow position:chr6:19293056-19292702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):53, 110

               
               
               Conread position:58-504
               
               
               Cow position:chr6:50577773-50577335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 83

               
               
               Conread position:58-533
               
               
               Cow position:chr6:17997059-17997530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:59-363
               
               
               Cow position:chr6:12965110-12964804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:59-535
               
               
               Cow position:chr6:7130604-7131088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 320

               
               
               Conread position:60-284
               
               
               Cow position:chr6:16091155-16090934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:60-371
               
               
               Cow position:chr6:48469260-48468942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 21

               
               
               Conread position:60-448
               
               
               Cow position:chr6:16287810-16288183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:60-535
               
               
               Cow position:chr6:55282038-55282506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:61-338
               
               
               Cow position:chr6:53546284-53546012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):50, 90

               
               
               Conread position:61-366
               
               
               Cow position:chr6:60143944-60144251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 85

               
               
               Conread position:61-445
               
               
               Cow position:chr6:38640490-38640100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:61-530
               
               
               Cow position:chr6:2547516-2547031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:61-535
               
               
               Cow position:chr6:5095290-5095767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:62-275
               
               
               Cow position:chr6:41657518-41657307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-312
               
               
               Cow position:chr6:60850952-60850707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:62-314
               
               
               Cow position:chr6:21470177-21470427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:62-316
               
               
               Cow position:chr6:58227651-58227370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:62-358
               
               
               Cow position:chr6:62437669-62437370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:62-359
               
               
               Cow position:chr6:2078562-2078865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:62-424
               
               
               Cow position:chr6:59602962-59603317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:62-431
               
               
               Cow position:chr6:11192226-11192583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:62-431
               
               
               Cow position:chr6:54854505-54854132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:62-436
               
               
               Cow position:chr6:23401741-23402111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:62-454
               
               
               Cow position:chr6:17313992-17313594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:62-475
               
               
               Cow position:chr6:19264245-19264656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:62-535
               
               
               Cow position:chr6:50090899-50090423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:63-235
               
               
               Cow position:chr6:34463339-34463508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:63-256
               
               
               Cow position:chr6:28561913-28562110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):14, 125

               
               
               Conread position:63-392
               
               
               Cow position:chr6:8600258-8599927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):94, 109

               
               
               Conread position:63-434
               
               
               Cow position:chr6:25614838-25615222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:63-520
               
               
               Cow position:chr6:15937599-15938054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 101

               
               
               Conread position:63-535
               
               
               Cow position:chr6:31535320-31535787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 83

               
               
               Conread position:64-457
               
               
               Cow position:chr6:19996867-19996477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 104

               
               
               Conread position:64-460
               
               
               Cow position:chr6:7128152-7128546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 94

               
               
               Conread position:64-535
               
               
               Cow position:chr6:6060322-6060774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 51

               
               
               Conread position:64-535
               
               
               Cow position:chr6:16700506-16700042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:65-314
               
               
               Cow position:chr6:29775869-29775625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 140

               
               
               Conread position:65-327
               
               
               Cow position:chr6:35318882-35319145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 110

               
               
               Conread position:65-340
               
               
               Cow position:chr6:63066088-63065800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:65-378
               
               
               Cow position:chr6:60468483-60468173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:65-432
               
               
               Cow position:chr6:22850000-22850363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:65-445
               
               
               Cow position:chr6:15446943-15447335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:65-482
               
               
               Cow position:chr6:15243513-15243088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 305

               
               
               Conread position:65-529
               
               
               Cow position:chr6:17414197-17414664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 64

               
               
               Conread position:65-530
               
               
               Cow position:chr6:51581005-51581471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:65-533
               
               
               Cow position:chr6:36196453-36195999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 82

               
               
               Conread position:65-534
               
               
               Cow position:chr6:58304662-58304214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:65-535
               
               
               Cow position:chr6:9736394-9736856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 141

               
               
               Conread position:65-535
               
               
               Cow position:chr6:13040706-13040235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 61

               
               
               Conread position:65-535
               
               
               Cow position:chr6:24468148-24468609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:65-535
               
               
               Cow position:chr6:32866970-32867423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:65-535
               
               
               Cow position:chr6:44194305-44194762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 87

               
               
               Conread position:65-535
               
               
               Cow position:chr6:44371693-44372160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):53, 35

               
               
               Conread position:66-267
               
               
               Cow position:chr6:23058462-23058259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:66-311
               
               
               Cow position:chr6:54831728-54831481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 128

               
               
               Conread position:66-340
               
               
               Cow position:chr6:48097353-48097626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 85

               
               
               Conread position:66-357
               
               
               Cow position:chr6:67451122-67451415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 31

               
               
               Conread position:66-390
               
               
               Cow position:chr6:693895-694223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 78

               
               
               Conread position:66-456
               
               
               Cow position:chr6:24934362-24934768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):41, 194

               
               
               Conread position:66-463
               
               
               Cow position:chr6:61169010-61168625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:67-290
               
               
               Cow position:chr6:42483663-42483440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:67-326
               
               
               Cow position:chr6:13653595-13653340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:67-454
               
               
               Cow position:chr6:21399507-21399893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:67-534
               
               
               Cow position:chr6:60859051-60859522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:68-256
               
               
               Cow position:chr6:36939123-36938926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:68-401
               
               
               Cow position:chr6:60273763-60274095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:68-451
               
               
               Cow position:chr6:48988682-48988300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):43, 126

               
               
               Conread position:69-388
               
               
               Cow position:chr6:17068408-17068723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 74

               
               
               Conread position:70-534
               
               
               Cow position:chr6:29485329-29484878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:70-535
               
               
               Cow position:chr6:32126298-32125850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:70-535
               
               
               Cow position:chr6:61269563-61269113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:71-266
               
               
               Cow position:chr6:63168517-63168715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):5, 169

               
               
               Conread position:71-300
               
               
               Cow position:chr6:1866974-1866747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:71-326
               
               
               Cow position:chr6:66979116-66978858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 132

               
               
               Conread position:71-479
               
               
               Cow position:chr6:120483-120079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:72-535
               
               
               Cow position:chr6:4383717-4383276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:73-402
               
               
               Cow position:chr6:37332353-37332019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:73-530
               
               
               Cow position:chr6:53024568-53025010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-530
               
               
               Cow position:chr6:65871273-65870812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:73-535
               
               
               Cow position:chr6:611786-611344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:317
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:73-535
               
               
               Cow position:chr6:15305814-15305369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 123

               
               
               Conread position:73-535
               
               
               Cow position:chr6:32287874-32287403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:75-377
               
               
               Cow position:chr6:5844927-5845235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:75-451
               
               
               Cow position:chr6:57545988-57546353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):140, 163

               
               
               Conread position:75-491
               
               
               Cow position:chr6:47356067-47355652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:75-533
               
               
               Cow position:chr6:39358102-39358555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:75-535
               
               
               Cow position:chr6:13367523-13367078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:320
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):28, 71

               
               
               Conread position:75-535
               
               
               Cow position:chr6:40032420-40031977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 36

               
               
               Conread position:76-348
               
               
               Cow position:chr6:66570665-66570405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):140, 73

               
               
               Conread position:79-240
               
               
               Cow position:chr6:8726914-8726752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:79-273
               
               
               Cow position:chr6:21350794-21350991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):29, 69

               
               
               Conread position:79-391
               
               
               Cow position:chr6:22985625-22985935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:79-515
               
               
               Cow position:chr6:63720426-63720003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 57

               
               
               Conread position:81-277
               
               
               Cow position:chr6:21083306-21083503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 74

               
               
               Conread position:81-312
               
               
               Cow position:chr6:61110017-61109790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 65

               
               
               Conread position:81-315
               
               
               Cow position:chr6:67069580-67069815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):131, 60

               
               
               Conread position:81-345
               
               
               Cow position:chr6:41014739-41015008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 222

               
               
               Conread position:81-348
               
               
               Cow position:chr6:60265933-60266214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):28, 218

               
               
               Conread position:81-380
               
               
               Cow position:chr6:49437566-49437278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):58, 48

               
               
               Conread position:81-382
               
               
               Cow position:chr6:9302488-9302784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):136, 52

               
               
               Conread position:81-385
               
               
               Cow position:chr6:581505-581815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 186

               
               
               Conread position:81-484
               
               
               Cow position:chr6:38610209-38609797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 123

               
               
               Conread position:81-535
               
               
               Cow position:chr6:38207250-38207712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 211

               
               
               Conread position:82-299
               
               
               Cow position:chr6:12623743-12623531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 67

               
               
               Conread position:82-524
               
               
               Cow position:chr6:46466052-46465622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:82-528
               
               
               Cow position:chr6:10105749-10106206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 69

               
               
               Conread position:84-245
               
               
               Cow position:chr6:63182517-63182358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:87-382
               
               
               Cow position:chr6:32044079-32043784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):24, 106

               
               
               Conread position:88-530
               
               
               Cow position:chr6:65702181-65702613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:302
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:88-533
               
               
               Cow position:chr6:1769966-1770410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 106

               
               
               Conread position:89-435
               
               
               Cow position:chr6:16262008-16261665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:89-493
               
               
               Cow position:chr6:60819742-60819341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:89-533
               
               
               Cow position:chr6:54133038-54132603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:90-535
               
               
               Cow position:chr6:26915551-26915113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 51

               
               
               Conread position:91-515
               
               
               Cow position:chr6:12091761-12092180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:292
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):20, 107

               
               
               Conread position:91-535
               
               
               Cow position:chr6:45690393-45690810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 61

               
               
               Conread position:93-474
               
               
               Cow position:chr6:58590495-58590119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):124, 74

               
               
               Conread position:94-306
               
               
               Cow position:chr6:1870975-1871187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:104-435
               
               
               Cow position:chr6:17705043-17704698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:104-456
               
               
               Cow position:chr6:67617738-67618097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):70, 26

               
               
               Conread position:104-461
               
               
               Cow position:chr6:54035931-54036282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:104-520
               
               
               Cow position:chr6:35842869-35842455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 86

               
               
               Conread position:104-535
               
               
               Cow position:chr6:28483226-28482798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 61

               
               
               Conread position:109-426
               
               
               Cow position:chr6:61524000-61524310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 59

               
               
               Conread position:111-449
               
               
               Cow position:chr6:57571680-57571342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:112-362
               
               
               Cow position:chr6:31078667-31078920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 49

               
               
               Conread position:112-391
               
               
               Cow position:chr6:2153395-2153668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):68, 80

               
               
               Conread position:118-535
               
               
               Cow position:chr6:54867712-54867294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 25

               
               
               Conread position:140-430
               
               
               Cow position:chr6:58597332-58597620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 20

               
               
               Conread position:140-436
               
               
               Cow position:chr6:50976224-50975936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 175

               
               
               Conread position:140-528
               
               
               Cow position:chr6:21869473-21869855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 157

               
               
               Conread position:141-273
               
               
               Cow position:chr6:28900503-28900368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:156-534
               
               
               Cow position:chr6:54990841-54991208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 252

               
               
               Conread position:161-445
               
               
               Cow position:chr6:45596379-45596669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:161-501
               
               
               Cow position:chr6:35993738-35993394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:164-376
               
               
               Cow position:chr6:59770377-59770165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:165-535
               
               
               Cow position:chr6:4864396-4864751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 256

               
               
               Conread position:167-359
               
               
               Cow position:chr6:1422635-1422440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 131

               
               
               Conread position:167-393
               
               
               Cow position:chr6:23465885-23466108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):50, 66

               
               
               Conread position:167-408
               
               
               Cow position:chr6:17794615-17794850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 131

               
               
               Conread position:167-528
               
               
               Cow position:chr6:9452620-9452979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:168-299
               
               
               Cow position:chr6:43651900-43651768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:168-333
               
               
               Cow position:chr6:4702676-4702842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):48, 84

               
               
               Conread position:168-403
               
               
               Cow position:chr6:20929366-20929606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:168-418
               
               
               Cow position:chr6:7119471-7119714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 183

               
               
               Conread position:168-445
               
               
               Cow position:chr6:28999792-29000053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:168-461
               
               
               Cow position:chr6:47640285-47640584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:168-519
               
               
               Cow position:chr6:21231673-21231335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 131

               
               
               Conread position:168-523
               
               
               Cow position:chr6:15782367-15782730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:168-535
               
               
               Cow position:chr6:24031524-24031158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 70

               
               
               Conread position:169-348
               
               
               Cow position:chr6:19259195-19259377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:169-348
               
               
               Cow position:chr6:32853334-32853154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:169-507
               
               
               Cow position:chr6:47575053-47574717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:169-533
               
               
               Cow position:chr6:49398473-49398831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 111

               
               
               Conread position:169-535
               
               
               Cow position:chr6:8209459-8209806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 37

               
               
               Conread position:169-535
               
               
               Cow position:chr6:28976893-28977248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 185

               
               
               Conread position:170-514
               
               
               Cow position:chr6:16423847-16423504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 249

               
               
               Conread position:171-337
               
               
               Cow position:chr6:53090153-53089986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):46, 6

               
               
               Conread position:171-508
               
               
               Cow position:chr6:24004681-24004359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 124

               
               
               Conread position:171-534
               
               
               Cow position:chr6:53652185-53651824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:171-535
               
               
               Cow position:chr6:19681380-19681737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 173

               
               
               Conread position:171-535
               
               
               Cow position:chr6:36470417-36470780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 257

               
               
               Conread position:172-348
               
               
               Cow position:chr6:32516966-32517132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:172-535
               
               
               Cow position:chr6:18048883-18049242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:177-410
               
               
               Cow position:chr6:66375194-66375426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 121

               
               
               Conread position:177-533
               
               
               Cow position:chr6:20097820-20098179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 294

               
               
               Conread position:190-535
               
               
               Cow position:chr6:28810872-28811211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 107

               
               
               Conread position:190-535
               
               
               Cow position:chr6:54368778-54369116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:196-535
               
               
               Cow position:chr6:35415396-35415738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):87, 110

               
               
               Conread position:197-535
               
               
               Cow position:chr6:48170056-48169728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):150, 93

               
               
               Conread position:201-452
               
               
               Cow position:chr6:3081001-3081268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 145

               
               
               Conread position:203-477
               
               
               Cow position:chr6:61608625-61608349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 255

               
               
               Conread position:206-455
               
               
               Cow position:chr6:20206385-20206132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:212-525
               
               
               Cow position:chr6:7989312-7989620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:212-535
               
               
               Cow position:chr6:130060-130381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 46

               
               
               Conread position:214-381
               
               
               Cow position:chr6:7170247-7170414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:217-379
               
               
               Cow position:chr6:67615332-67615496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:223-530
               
               
               Cow position:chr6:24962237-24961933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 129

               
               
               Conread position:226-457
               
               
               Cow position:chr6:63011080-63011311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 57

               
               
               Conread position:228-440
               
               
               Cow position:chr6:37376427-37376643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:237-533
               
               
               Cow position:chr6:18961438-18961737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 7

               
               
               Conread position:244-535
               
               
               Cow position:chr6:49410626-49410897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:252-382
               
               
               Cow position:chr6:31228826-31228700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:31-512
               
               
               Cow position:chr7:48715151-48714657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:34-243
               
               
               Cow position:chr7:28584556-28584349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:34-319
               
               
               Cow position:chr7:50021178-50021459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:39-427
               
               
               Cow position:chr7:32946342-32945963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 26

               
               
               Conread position:40-272
               
               
               Cow position:chr7:8888574-8888336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 156

               
               
               Conread position:42-264
               
               
               Cow position:chr7:17001005-17000779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):69, 155

               
               
               Conread position:42-525
               
               
               Cow position:chr7:64228616-64229101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:43-535
               
               
               Cow position:chr7:22793606-22793132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 37

               
               
               Conread position:43-535
               
               
               Cow position:chr7:47698296-47697810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 211

               
               
               Conread position:45-526
               
               
               Cow position:chr7:39093651-39094120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:325
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:46-535
               
               
               Cow position:chr7:39940009-39939524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:47-448
               
               
               Cow position:chr7:57829496-57829090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:49-535
               
               
               Cow position:chr7:39150219-39149722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 30

               
               
               Conread position:49-535
               
               
               Cow position:chr7:60483163-60483637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 95

               
               
               Conread position:50-366
               
               
               Cow position:chr7:8821737-8821422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:50-530
               
               
               Cow position:chr7:41871839-41872301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):413, 59

               
               
               Conread position:51-457
               
               
               Cow position:chr7:21165968-21166388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):16, 144

               
               
               Conread position:51-535
               
               
               Cow position:chr7:10943276-10943767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:52-363
               
               
               Cow position:chr7:3160060-3159768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):165, 10

               
               
               Conread position:52-367
               
               
               Cow position:chr7:17750572-17750885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):22, 122

               
               
               Conread position:52-534
               
               
               Cow position:chr7:16022555-16022088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:52-535
               
               
               Cow position:chr7:25415668-25415181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:53-240
               
               
               Cow position:chr7:39988998-39988811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:53-473
               
               
               Cow position:chr7:46818235-46818650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:53-535
               
               
               Cow position:chr7:47931526-47932010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 12

               
               
               Conread position:54-282
               
               
               Cow position:chr7:58682953-58683179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:54-319
               
               
               Cow position:chr7:26871724-26871994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:54-529
               
               
               Cow position:chr7:47547666-47547186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:55-288
               
               
               Cow position:chr7:53653260-53653012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:55-348
               
               
               Cow position:chr7:25786106-25785807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):15, 88

               
               
               Conread position:55-392
               
               
               Cow position:chr7:60732366-60732715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 191

               
               
               Conread position:55-457
               
               
               Cow position:chr7:39428122-39427714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 126

               
               
               Conread position:55-469
               
               
               Cow position:chr7:11958180-11958583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 86

               
               
               Conread position:55-495
               
               
               Cow position:chr7:23624405-23624821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:55-504
               
               
               Cow position:chr7:10075287-10074833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-525
               
               
               Cow position:chr7:68172898-68173358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:55-533
               
               
               Cow position:chr7:48359262-48358797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:328
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):19, 91

               
               
               Conread position:56-295
               
               
               Cow position:chr7:4138497-4138734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:56-330
               
               
               Cow position:chr7:23678190-23677916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):52, 115

               
               
               Conread position:56-348
               
               
               Cow position:chr7:62542931-62542628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 141

               
               
               Conread position:56-514
               
               
               Cow position:chr7:4719964-4720427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 184

               
               
               Conread position:56-533
               
               
               Cow position:chr7:14519780-14520250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 90

               
               
               Conread position:57-249
               
               
               Cow position:chr7:31885857-31885661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):20, 114

               
               
               Conread position:57-286
               
               
               Cow position:chr7:32324456-32324232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:57-299
               
               
               Cow position:chr7:57242968-57243214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:57-400
               
               
               Cow position:chr7:32259936-32260285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:57-432
               
               
               Cow position:chr7:15559942-15559576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:57-514
               
               
               Cow position:chr7:34083991-34084443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):15, 58

               
               
               Conread position:58-235
               
               
               Cow position:chr7:67763888-67764063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:58-332
               
               
               Cow position:chr7:39946990-39947260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:58-527
               
               
               Cow position:chr7:50065857-50066319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 85

               
               
               Conread position:58-534
               
               
               Cow position:chr7:36534286-36533815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 117

               
               
               Conread position:58-535
               
               
               Cow position:chr7:23679332-23679810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 92

               
               
               Conread position:60-355
               
               
               Cow position:chr7:12494862-12495148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:60-512
               
               
               Cow position:chr7:3304841-3304373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:60-525
               
               
               Cow position:chr7:33279728-33280194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 149

               
               
               Conread position:60-533
               
               
               Cow position:chr7:18388138-18388611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:60-535
               
               
               Cow position:chr7:29279766-29280233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:60-535
               
               
               Cow position:chr7:35274829-35275286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:60-535
               
               
               Cow position:chr7:60121284-60120797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:316
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 51

               
               
               Conread position:61-362
               
               
               Cow position:chr7:26263395-26263703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:61-516
               
               
               Cow position:chr7:50860253-50859814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 50

               
               
               Conread position:62-242
               
               
               Cow position:chr7:65695052-65695232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:62-256
               
               
               Cow position:chr7:10438583-10438389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:62-257
               
               
               Cow position:chr7:46191702-46191899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:62-316
               
               
               Cow position:chr7:26909511-26909759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:62-323
               
               
               Cow position:chr7:9077554-9077813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:62-329
               
               
               Cow position:chr7:31240948-31240677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):49, 243

               
               
               Conread position:62-348
               
               
               Cow position:chr7:29505371-29505083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 93

               
               
               Conread position:62-353
               
               
               Cow position:chr7:40275923-40276232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:62-359
               
               
               Cow position:chr7:146966-146670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 92

               
               
               Conread position:62-370
               
               
               Cow position:chr7:11444245-11443939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):48, 133

               
               
               Conread position:62-378
               
               
               Cow position:chr7:40484571-40484260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:62-400
               
               
               Cow position:chr7:10885153-10884809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-527
               
               
               Cow position:chr7:36665586-36665124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:62-530
               
               
               Cow position:chr7:8878138-8877669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:62-531
               
               
               Cow position:chr7:41315170-41315649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:62-533
               
               
               Cow position:chr7:19466001-19466474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:333
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:62-533
               
               
               Cow position:chr7:63749225-63749692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:62-534
               
               
               Cow position:chr7:29510188-29509740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-534
               
               
               Cow position:chr7:53053149-53053620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 85

               
               
               Conread position:62-535
               
               
               Cow position:chr7:20968680-20968217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 116

               
               
               Conread position:62-535
               
               
               Cow position:chr7:29300524-29300973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:62-535
               
               
               Cow position:chr7:36996614-36996163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:62-535
               
               
               Cow position:chr7:40009084-40008603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 103

               
               
               Conread position:62-535
               
               
               Cow position:chr7:47513426-47513904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 115

               
               
               Conread position:63-277
               
               
               Cow position:chr7:11784790-11785004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:63-363
               
               
               Cow position:chr7:56886267-56886556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:63-417
               
               
               Cow position:chr7:53579134-53579494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:63-530
               
               
               Cow position:chr7:4129533-4130000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:63-533
               
               
               Cow position:chr7:51910366-51909916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 19

               
               
               Conread position:63-535
               
               
               Cow position:chr7:34433024-34433494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:64-397
               
               
               Cow position:chr7:15533832-15534153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 15

               
               
               Conread position:64-437
               
               
               Cow position:chr7:51644893-51644540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):150, 17

               
               
               Conread position:64-503
               
               
               Cow position:chr7:35793332-35792935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):18, 180

               
               
               Conread position:64-530
               
               
               Cow position:chr7:49751382-49750914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:64-530
               
               
               Cow position:chr7:53785735-53786168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:64-533
               
               
               Cow position:chr7:32805808-32806273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:318
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:64-535
               
               
               Cow position:chr7:39167719-39167250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 103

               
               
               Conread position:65-268
               
               
               Cow position:chr7:24022220-24022414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):151, 69

               
               
               Conread position:65-310
               
               
               Cow position:chr7:11487423-11487662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 44

               
               
               Conread position:65-310
               
               
               Cow position:chr7:50166281-50166036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:65-319
               
               
               Cow position:chr7:6469879-6469620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 238

               
               
               Conread position:65-326
               
               
               Cow position:chr7:35088913-35088653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):49, 236

               
               
               Conread position:65-514
               
               
               Cow position:chr7:249252-249698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:65-533
               
               
               Cow position:chr7:31204240-31204740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:340
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 130

               
               
               Conread position:65-533
               
               
               Cow position:chr7:46856717-46857169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 16

               
               
               Conread position:65-535
               
               
               Cow position:chr7:23205375-23205848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 119

               
               
               Conread position:65-535
               
               
               Cow position:chr7:32284182-32283698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:66-256
               
               
               Cow position:chr7:8292892-8293091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:66-267
               
               
               Cow position:chr7:63772303-63772099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:66-455
               
               
               Cow position:chr7:55085918-55085517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:66-494
               
               
               Cow position:chr7:54013630-54013184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 136

               
               
               Conread position:66-530
               
               
               Cow position:chr7:31170709-31171162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:66-534
               
               
               Cow position:chr7:4452854-4452385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:67-241
               
               
               Cow position:chr7:68774006-68773840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 43

               
               
               Conread position:67-397
               
               
               Cow position:chr7:8109994-8110331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 131

               
               
               Conread position:67-454
               
               
               Cow position:chr7:9781472-9781865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-514
               
               
               Cow position:chr7:14029557-14029143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:312
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:67-529
               
               
               Cow position:chr7:51039680-51039209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:67-530
               
               
               Cow position:chr7:22730451-22729995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-535
               
               
               Cow position:chr7:33393560-33393098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:67-535
               
               
               Cow position:chr7:43711462-43711005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:67-535
               
               
               Cow position:chr7:56820337-56820786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:68-249
               
               
               Cow position:chr7:5914483-5914299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 98

               
               
               Conread position:68-331
               
               
               Cow position:chr7:53653519-53653769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:69-400
               
               
               Cow position:chr7:69133207-69132868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:69-534
               
               
               Cow position:chr7:59688787-59688330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:321
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):8, 101

               
               
               Conread position:70-268
               
               
               Cow position:chr7:23672001-23671801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:70-460
               
               
               Cow position:chr7:42593016-42593417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 344

               
               
               Conread position:70-534
               
               
               Cow position:chr7:4582482-4582949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 86

               
               
               Conread position:70-535
               
               
               Cow position:chr7:17713214-17713679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:70-535
               
               
               Cow position:chr7:25859954-25860403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):39, 179

               
               
               Conread position:70-535
               
               
               Cow position:chr7:58301691-58302160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 77

               
               
               Conread position:71-306
               
               
               Cow position:chr7:6043890-6044125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:71-316
               
               
               Cow position:chr7:12488671-12488432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:71-355
               
               
               Cow position:chr7:54108622-54108904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:71-535
               
               
               Cow position:chr7:20535119-20534667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:71-535
               
               
               Cow position:chr7:48721658-48722120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:72-296
               
               
               Cow position:chr7:31523792-31523566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:72-312
               
               
               Cow position:chr7:11796657-11796897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:72-380
               
               
               Cow position:chr7:4812254-4811959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:72-534
               
               
               Cow position:chr7:19797677-19798146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:321
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):16, 119

               
               
               Conread position:73-266
               
               
               Cow position:chr7:46149388-46149201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 137

               
               
               Conread position:73-273
               
               
               Cow position:chr7:11054799-11054595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:73-307
               
               
               Cow position:chr7:11960636-11960407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:73-311
               
               
               Cow position:chr7:6116122-6116357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:73-320
               
               
               Cow position:chr7:3431118-3431368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:73-337
               
               
               Cow position:chr7:23464508-23464242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):42, 126

               
               
               Conread position:73-354
               
               
               Cow position:chr7:50494237-50493954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):106, 26

               
               
               Conread position:73-364
               
               
               Cow position:chr7:38429472-38429759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:73-514
               
               
               Cow position:chr7:55687937-55688390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 167

               
               
               Conread position:73-526
               
               
               Cow position:chr7:10392-9939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:73-530
               
               
               Cow position:chr7:30931738-30932186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:73-530
               
               
               Cow position:chr7:53806564-53807026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 284

               
               
               Conread position:73-533
               
               
               Cow position:chr7:54712661-54712203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-535
               
               
               Cow position:chr7:32893994-32894468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 233

               
               
               Conread position:73-535
               
               
               Cow position:chr7:49105958-49106417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:74-398
               
               
               Cow position:chr7:35300177-35300501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 69

               
               
               Conread position:74-457
               
               
               Cow position:chr7:37394543-37394176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:74-514
               
               
               Cow position:chr7:68051355-68050905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:75-290
               
               
               Cow position:chr7:43085120-43084903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:75-393
               
               
               Cow position:chr7:29682205-29682524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):34, 121

               
               
               Conread position:75-417
               
               
               Cow position:chr7:40425066-40425417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:75-456
               
               
               Cow position:chr7:18856745-18857124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:75-533
               
               
               Cow position:chr7:43109294-43109744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:75-535
               
               
               Cow position:chr7:34428822-34428346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:75-535
               
               
               Cow position:chr7:39416149-39415690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:76-432
               
               
               Cow position:chr7:33698195-33697841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:76-531
               
               
               Cow position:chr7:53097835-53097388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:79-535
               
               
               Cow position:chr7:13594014-13593562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 166

               
               
               Conread position:79-535
               
               
               Cow position:chr7:33386155-33385719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:308
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):136, 72

               
               
               Conread position:80-533
               
               
               Cow position:chr7:8777448-8776986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:80-535
               
               
               Cow position:chr7:63707081-63707506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 69

               
               
               Conread position:81-307
               
               
               Cow position:chr7:10414903-10415122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):136, 62

               
               
               Conread position:81-401
               
               
               Cow position:chr7:8658751-8658429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:81-445
               
               
               Cow position:chr7:18187991-18188350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 66

               
               
               Conread position:81-484
               
               
               Cow position:chr7:31504086-31503687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:81-516
               
               
               Cow position:chr7:64135230-64135659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:81-535
               
               
               Cow position:chr7:30276975-30276518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 87

               
               
               Conread position:82-481
               
               
               Cow position:chr7:4765075-4764681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:82-535
               
               
               Cow position:chr7:23456588-23457031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 52

               
               
               Conread position:86-291
               
               
               Cow position:chr7:68595753-68595951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):147, 24

               
               
               Conread position:86-337
               
               
               Cow position:chr7:14317171-14316922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:86-461
               
               
               Cow position:chr7:57659929-57660307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:87-410
               
               
               Cow position:chr7:39635105-39635428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):21, 73

               
               
               Conread position:88-370
               
               
               Cow position:chr7:7535765-7535480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 56

               
               
               Conread position:88-418
               
               
               Cow position:chr7:13067390-13067057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):20, 82

               
               
               Conread position:88-533
               
               
               Cow position:chr7:25263600-25263154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:305
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:89-340
               
               
               Cow position:chr7:53202944-53202688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 105

               
               
               Conread position:89-529
               
               
               Cow position:chr7:3336332-3336758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:89-535
               
               
               Cow position:chr7:15755215-15755664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 376

               
               
               Conread position:89-535
               
               
               Cow position:chr7:17966897-17967333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:89-535
               
               
               Cow position:chr7:37569281-37568815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:89-535
               
               
               Cow position:chr7:50772504-50772946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:90-301
               
               
               Cow position:chr7:5398841-5399053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 78

               
               
               Conread position:104-447
               
               
               Cow position:chr7:15561207-15561554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):98, 93

               
               
               Conread position:104-494
               
               
               Cow position:chr7:44496357-44496737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:104-514
               
               
               Cow position:chr7:26737130-26737532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 200

               
               
               Conread position:109-378
               
               
               Cow position:chr7:56615876-56615601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):71, 83

               
               
               Conread position:109-535
               
               
               Cow position:chr7:9146855-9146431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:301
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):55, 85

               
               
               Conread position:112-376
               
               
               Cow position:chr7:32222266-32221995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):105, 31

               
               
               Conread position:114-424
               
               
               Cow position:chr7:42637167-42636873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 30

               
               
               Conread position:115-314
               
               
               Cow position:chr7:8090215-8090413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 148

               
               
               Conread position:119-409
               
               
               Cow position:chr7:39472315-39472610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:140-340
               
               
               Cow position:chr7:598423-598220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:141-526
               
               
               Cow position:chr7:17816928-17816552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 159

               
               
               Conread position:141-535
               
               
               Cow position:chr7:25511947-25512335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 149

               
               
               Conread position:152-346
               
               
               Cow position:chr7:9185826-9185637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:154-440
               
               
               Cow position:chr7:49903935-49903652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:154-530
               
               
               Cow position:chr7:45927001-45927364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:158-360
               
               
               Cow position:chr7:52517486-52517289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 140

               
               
               Conread position:159-486
               
               
               Cow position:chr7:8977664-8977987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:159-525
               
               
               Cow position:chr7:44986810-44986453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 9

               
               
               Conread position:161-352
               
               
               Cow position:chr7:61699536-61699731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:166-343
               
               
               Cow position:chr7:43297062-43296882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:167-511
               
               
               Cow position:chr7:41327883-41328228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 268

               
               
               Conread position:167-514
               
               
               Cow position:chr7:48667565-48667234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 93

               
               
               Conread position:167-535
               
               
               Cow position:chr7:62793949-62793568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:168-508
               
               
               Cow position:chr7:43234295-43234633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:168-520
               
               
               Cow position:chr7:1262179-1261819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):47, 288

               
               
               Conread position:168-534
               
               
               Cow position:chr7:1792299-1792697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:168-535
               
               
               Cow position:chr7:6058278-6057915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 220

               
               
               Conread position:169-314
               
               
               Cow position:chr7:18247680-18247826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:169-340
               
               
               Cow position:chr7:49405436-49405268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 136

               
               
               Conread position:169-378
               
               
               Cow position:chr7:29122049-29121840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:169-427
               
               
               Cow position:chr7:13133554-13133801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:169-427
               
               
               Cow position:chr7:28544325-28544065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:169-444
               
               
               Cow position:chr7:40074833-40074553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 205

               
               
               Conread position:169-489
               
               
               Cow position:chr7:33990101-33989793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:169-522
               
               
               Cow position:chr7:28917240-28916885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 130

               
               
               Conread position:169-529
               
               
               Cow position:chr7:23646760-23646394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 133

               
               
               Conread position:169-534
               
               
               Cow position:chr7:23936260-23935902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 115

               
               
               Conread position:169-534
               
               
               Cow position:chr7:39904243-39903890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 8

               
               
               Conread position:169-535
               
               
               Cow position:chr7:3256196-3256558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 124

               
               
               Conread position:169-535
               
               
               Cow position:chr7:40263509-40263868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:169-535
               
               
               Cow position:chr7:64364379-64364743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 141

               
               
               Conread position:170-391
               
               
               Cow position:chr7:18288122-18288342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:170-520
               
               
               Cow position:chr7:6042120-6041786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 121

               
               
               Conread position:171-382
               
               
               Cow position:chr7:24461098-24460893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 120

               
               
               Conread position:171-409
               
               
               Cow position:chr7:13228432-13228669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):46, 171

               
               
               Conread position:171-512
               
               
               Cow position:chr7:32079598-32079268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):44, 50

               
               
               Conread position:171-535
               
               
               Cow position:chr7:32710838-32711195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):143, 62

               
               
               Conread position:171-535
               
               
               Cow position:chr7:37362023-37361669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 63

               
               
               Conread position:172-334
               
               
               Cow position:chr7:43307321-43307153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:172-530
               
               
               Cow position:chr7:53697761-53698125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 281

               
               
               Conread position:172-535
               
               
               Cow position:chr7:39451003-39451345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 171

               
               
               Conread position:173-436
               
               
               Cow position:chr7:21565419-21565674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:173-515
               
               
               Cow position:chr7:59168410-59168084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 125

               
               
               Conread position:173-530
               
               
               Cow position:chr7:19230368-19230711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 127

               
               
               Conread position:173-534
               
               
               Cow position:chr7:44049226-44049578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 136

               
               
               Conread position:174-535
               
               
               Cow position:chr7:48243816-48243464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:177-533
               
               
               Cow position:chr7:32915256-32914899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 132

               
               
               Conread position:180-351
               
               
               Cow position:chr7:35245453-35245623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:189-535
               
               
               Cow position:chr7:27509844-27509502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:190-400
               
               
               Cow position:chr7:8102549-8102338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:192-336
               
               
               Cow position:chr7:32899830-32899976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:193-495
               
               
               Cow position:chr7:3773141-3773444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:195-428
               
               
               Cow position:chr7:11854618-11854383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 188

               
               
               Conread position:197-455
               
               
               Cow position:chr7:25960588-25960325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):11, 102

               
               
               Conread position:201-397
               
               
               Cow position:chr7:60870058-60869867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:203-338
               
               
               Cow position:chr7:19221682-19221545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:206-534
               
               
               Cow position:chr7:50095499-50095167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:207-535
               
               
               Cow position:chr7:45158233-45157918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):10, 127

               
               
               Conread position:208-533
               
               
               Cow position:chr7:26485683-26485368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):7, 70

               
               
               Conread position:210-482
               
               
               Cow position:chr7:46105775-46106047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:210-512
               
               
               Cow position:chr7:5723811-5723506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 111

               
               
               Conread position:214-363
               
               
               Cow position:chr7:40235652-40235803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 55

               
               
               Conread position:224-533
               
               
               Cow position:chr7:39155207-39154895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):91, 110

               
               
               Conread position:226-525
               
               
               Cow position:chr7:24991358-24991075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):283, 124

               
               
               Conread position:226-535
               
               
               Cow position:chr7:30307834-30307531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:239-535
               
               
               Cow position:chr7:28584325-28584034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 69

               
               
               Conread position:245-535
               
               
               Cow position:chr7:32819891-32819597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 201

               
               
               Conread position:12-490
               
               
               Cow position:chr8:1012236-1011776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:323
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:20-477
               
               
               Cow position:chr8:21222897-21222445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:311
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:32-366
               
               
               Cow position:chr8:4333785-4334120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:41-535
               
               
               Cow position:chr8:32133508-32133006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 19

               
               
               Conread position:42-402
               
               
               Cow position:chr8:28378524-28378872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 10

               
               
               Conread position:43-418
               
               
               Cow position:chr8:16413567-16413943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:44-528
               
               
               Cow position:chr8:53230252-53229795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:46-366
               
               
               Cow position:chr8:18729020-18728704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):65, 37

               
               
               Conread position:47-449
               
               
               Cow position:chr8:32332235-32332655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:49-535
               
               
               Cow position:chr8:46799045-46799549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:50-412
               
               
               Cow position:chr8:33640600-33640236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:50-429
               
               
               Cow position:chr8:58058976-58058597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:50-457
               
               
               Cow position:chr8:27608705-27608280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 145

               
               
               Conread position:51-304
               
               
               Cow position:chr8:43153439-43153706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):60, 30

               
               
               Conread position:51-305
               
               
               Cow position:chr8:38643267-38643534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:51-339
               
               
               Cow position:chr8:58393799-58393509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):11, 95

               
               
               Conread position:51-448
               
               
               Cow position:chr8:35563571-35563167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:51-535
               
               
               Cow position:chr8:2904176-2904660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:51-535
               
               
               Cow position:chr8:52925495-52925964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:52-264
               
               
               Cow position:chr8:37148544-37148332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:52-334
               
               
               Cow position:chr8:9655808-9655528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:52-348
               
               
               Cow position:chr8:7204521-7204812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:53-299
               
               
               Cow position:chr8:40633632-40633880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:53-350
               
               
               Cow position:chr8:55247362-55247657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:53-400
               
               
               Cow position:chr8:11964525-11964185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):58, 84

               
               
               Conread position:54-306
               
               
               Cow position:chr8:34820077-34820337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:54-367
               
               
               Cow position:chr8:2525038-2524722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:54-436
               
               
               Cow position:chr8:27731273-27730891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):57, 141

               
               
               Conread position:54-535
               
               
               Cow position:chr8:35456609-35457089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:54-535
               
               
               Cow position:chr8:48776053-48775569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 137

               
               
               Conread position:54-535
               
               
               Cow position:chr8:54052530-54052059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:55-249
               
               
               Cow position:chr8:30868499-30868695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:55-306
               
               
               Cow position:chr8:19727685-19727431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 162

               
               
               Conread position:55-319
               
               
               Cow position:chr8:52870414-52870149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 134

               
               
               Conread position:55-332
               
               
               Cow position:chr8:4593136-4593423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:55-356
               
               
               Cow position:chr8:5730261-5729982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:55-435
               
               
               Cow position:chr8:33125722-33125357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):161, 27

               
               
               Conread position:55-532
               
               
               Cow position:chr8:9316137-9315667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:323
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:55-533
               
               
               Cow position:chr8:37571474-37571951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:55-533
               
               
               Cow position:chr8:38356624-38357094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:55-535
               
               
               Cow position:chr8:16653665-16653160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 135

               
               
               Conread position:55-535
               
               
               Cow position:chr8:20212269-20212753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:55-535
               
               
               Cow position:chr8:35827572-35828051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:55-535
               
               
               Cow position:chr8:36375290-36375758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:55-535
               
               
               Cow position:chr8:39066458-39065965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:55-535
               
               
               Cow position:chr8:53606290-53606773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 7

               
               
               Conread position:56-235
               
               
               Cow position:chr8:16053920-16053744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:56-284
               
               
               Cow position:chr8:41888605-41888384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:56-375
               
               
               Cow position:chr8:26305631-26305954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 141

               
               
               Conread position:56-391
               
               
               Cow position:chr8:31985490-31985159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:56-397
               
               
               Cow position:chr8:44449375-44449709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 89

               
               
               Conread position:56-438
               
               
               Cow position:chr8:37635762-37636140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:56-461
               
               
               Cow position:chr8:34769727-34769330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:284
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:56-525
               
               
               Cow position:chr8:23030658-23030200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:312
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:56-531
               
               
               Cow position:chr8:18017752-18017270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 113

               
               
               Conread position:56-535
               
               
               Cow position:chr8:17199196-17199681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 140

               
               
               Conread position:56-535
               
               
               Cow position:chr8:24371483-24371963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 9

               
               
               Conread position:56-535
               
               
               Cow position:chr8:26626102-26625628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 138

               
               
               Conread position:57-515
               
               
               Cow position:chr8:37167974-37167526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:310
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:57-525
               
               
               Cow position:chr8:38573009-38573459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:314
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:57-535
               
               
               Cow position:chr8:8986699-8987183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 296

               
               
               Conread position:58-348
               
               
               Cow position:chr8:2020957-2021245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):157, 21

               
               
               Conread position:59-380
               
               
               Cow position:chr8:6661179-6661505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:59-406
               
               
               Cow position:chr8:41721963-41722304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:59-445
               
               
               Cow position:chr8:19011573-19011955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 91

               
               
               Conread position:60-535
               
               
               Cow position:chr8:9168586-9169050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 142

               
               
               Conread position:60-535
               
               
               Cow position:chr8:35972074-35971599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:60-535
               
               
               Cow position:chr8:60746870-60746398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:61-290
               
               
               Cow position:chr8:55194402-55194169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:61-334
               
               
               Cow position:chr8:37559346-37559083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):53, 10

               
               
               Conread position:62-266
               
               
               Cow position:chr8:35452798-35452594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 109

               
               
               Conread position:62-275
               
               
               Cow position:chr8:61848504-61848716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:62-302
               
               
               Cow position:chr8:3914821-3914575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:62-332
               
               
               Cow position:chr8:22592840-22593113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):47, 167

               
               
               Conread position:62-344
               
               
               Cow position:chr8:55089633-55089908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 20

               
               
               Conread position:62-383
               
               
               Cow position:chr8:46082389-46082069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:62-385
               
               
               Cow position:chr8:20052378-20052050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:62-389
               
               
               Cow position:chr8:522199-522537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 134

               
               
               Conread position:62-438
               
               
               Cow position:chr8:48482577-48482967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):45, 140

               
               
               Conread position:62-516
               
               
               Cow position:chr8:39592816-39592363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:313
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:62-525
               
               
               Cow position:chr8:27138574-27139025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 20

               
               
               Conread position:62-530
               
               
               Cow position:chr8:46964967-46964474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 136

               
               
               Conread position:62-533
               
               
               Cow position:chr8:58636956-58636528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:62-535
               
               
               Cow position:chr8:537688-538161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:62-535
               
               
               Cow position:chr8:1304130-1303660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr8:28322195-28321729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:62-535
               
               
               Cow position:chr8:37882587-37882079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:349
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:63-212
               
               
               Cow position:chr8:20850135-20850281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:63-516
               
               
               Cow position:chr8:54303239-54302808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:63-534
               
               
               Cow position:chr8:48527743-48528197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:64-418
               
               
               Cow position:chr8:15426971-15426620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:64-535
               
               
               Cow position:chr8:21220378-21219904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 101

               
               
               Conread position:64-535
               
               
               Cow position:chr8:34799915-34799426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:65-294
               
               
               Cow position:chr8:24905701-24905457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:65-306
               
               
               Cow position:chr8:54062119-54061878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):49, 79

               
               
               Conread position:65-345
               
               
               Cow position:chr8:52773156-52772872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:65-407
               
               
               Cow position:chr8:28228461-28228125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:65-444
               
               
               Cow position:chr8:40280910-40280529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 176

               
               
               Conread position:65-530
               
               
               Cow position:chr8:32620759-32621238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:65-535
               
               
               Cow position:chr8:8924121-8924592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 44

               
               
               Conread position:65-535
               
               
               Cow position:chr8:17179819-17180272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 76

               
               
               Conread position:65-535
               
               
               Cow position:chr8:46235928-46235454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 181

               
               
               Conread position:65-535
               
               
               Cow position:chr8:51661374-51661846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 132

               
               
               Conread position:66-263
               
               
               Cow position:chr8:29173428-29173232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):149, 75

               
               
               Conread position:66-299
               
               
               Cow position:chr8:3887552-3887319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):149, 24

               
               
               Conread position:66-343
               
               
               Cow position:chr8:5437980-5437705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:66-531
               
               
               Cow position:chr8:20107573-20108025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:66-533
               
               
               Cow position:chr8:12796047-12795571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 70

               
               
               Conread position:67-294
               
               
               Cow position:chr8:48555442-48555664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 77

               
               
               Conread position:67-330
               
               
               Cow position:chr8:55070933-55070669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):150, 42

               
               
               Conread position:67-343
               
               
               Cow position:chr8:60339708-60339974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:67-381
               
               
               Cow position:chr8:4203633-4203950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-394
               
               
               Cow position:chr8:14382952-14383298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:67-534
               
               
               Cow position:chr8:42762215-42762672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:67-535
               
               
               Cow position:chr8:38894239-38893761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 308

               
               
               Conread position:67-535
               
               
               Cow position:chr8:53383613-53383159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:67-535
               
               
               Cow position:chr8:55716971-55716509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:68-434
               
               
               Cow position:chr8:55885191-55884823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:68-439
               
               
               Cow position:chr8:15187467-15187100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:68-505
               
               
               Cow position:chr8:4796964-4796568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:69-367
               
               
               Cow position:chr8:39487423-39487719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:69-435
               
               
               Cow position:chr8:53633021-53633381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):148, 38

               
               
               Conread position:69-533
               
               
               Cow position:chr8:61157013-61157466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:69-535
               
               
               Cow position:chr8:1297725-1297270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:70-444
               
               
               Cow position:chr8:37347232-37347615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 346

               
               
               Conread position:71-264
               
               
               Cow position:chr8:5671939-5672132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 123

               
               
               Conread position:71-346
               
               
               Cow position:chr8:37672262-37671984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:71-353
               
               
               Cow position:chr8:3662328-3662621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:71-372
               
               
               Cow position:chr8:43940680-43940986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 100

               
               
               Conread position:71-475
               
               
               Cow position:chr8:6951733-6951342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 38

               
               
               Conread position:71-479
               
               
               Cow position:chr8:8189842-8190257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:71-501
               
               
               Cow position:chr8:24328630-24329058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 204

               
               
               Conread position:71-535
               
               
               Cow position:chr8:10971050-10970581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:72-240
               
               
               Cow position:chr8:55064150-55063980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:72-379
               
               
               Cow position:chr8:20910861-20911182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):98, 38

               
               
               Conread position:72-397
               
               
               Cow position:chr8:6224227-6224547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 69

               
               
               Conread position:72-504
               
               
               Cow position:chr8:31297481-31297054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 34

               
               
               Conread position:73-235
               
               
               Cow position:chr8:46616599-46616438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:73-249
               
               
               Cow position:chr8:6478059-6477884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):129, 99

               
               
               Conread position:73-275
               
               
               Cow position:chr8:6675408-6675208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:73-296
               
               
               Cow position:chr8:19616519-19616306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):142, 68

               
               
               Conread position:73-332
               
               
               Cow position:chr8:11864165-11863906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:73-426
               
               
               Cow position:chr8:12799145-12798791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):24, 284

               
               
               Conread position:73-461
               
               
               Cow position:chr8:61128486-61128882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:73-491
               
               
               Cow position:chr8:33406646-33407049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 30

               
               
               Conread position:73-508
               
               
               Cow position:chr8:15694265-15694698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 38

               
               
               Conread position:73-534
               
               
               Cow position:chr8:29958612-29958182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:320
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):89, 18

               
               
               Conread position:73-535
               
               
               Cow position:chr8:22274077-22273614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:73-535
               
               
               Cow position:chr8:29029864-29030342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:74-535
               
               
               Cow position:chr8:28229263-28229718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:75-397
               
               
               Cow position:chr8:19204231-19204557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:75-434
               
               
               Cow position:chr8:39807812-39807445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:75-450
               
               
               Cow position:chr8:29149650-29150036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):35, 102

               
               
               Conread position:75-496
               
               
               Cow position:chr8:39181562-39181979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 113

               
               
               Conread position:75-535
               
               
               Cow position:chr8:25628539-25628101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 35

               
               
               Conread position:76-287
               
               
               Cow position:chr8:19785069-19784861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:76-295
               
               
               Cow position:chr8:47410293-47410073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:76-432
               
               
               Cow position:chr8:38711798-38711454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:76-493
               
               
               Cow position:chr8:4500699-4500286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:76-535
               
               
               Cow position:chr8:19642678-19642224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:78-431
               
               
               Cow position:chr8:6073611-6073961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 69

               
               
               Conread position:79-346
               
               
               Cow position:chr8:6248678-6248936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):139, 30

               
               
               Conread position:79-425
               
               
               Cow position:chr8:21858502-21858845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 199

               
               
               Conread position:79-534
               
               
               Cow position:chr8:10456670-10456226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:79-535
               
               
               Cow position:chr8:19995523-19995976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 96

               
               
               Conread position:81-285
               
               
               Cow position:chr8:53587117-53587316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:81-418
               
               
               Cow position:chr8:37391152-37391490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:81-525
               
               
               Cow position:chr8:16144339-16143889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 107

               
               
               Conread position:81-535
               
               
               Cow position:chr8:42794107-42794556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 226

               
               
               Conread position:82-360
               
               
               Cow position:chr8:32130437-32130161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):10, 65

               
               
               Conread position:82-457
               
               
               Cow position:chr8:47283862-47284236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 214

               
               
               Conread position:82-535
               
               
               Cow position:chr8:24867541-24867992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:82-535
               
               
               Cow position:chr8:59250929-59250480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 76

               
               
               Conread position:84-318
               
               
               Cow position:chr8:34059959-34060193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 78

               
               
               Conread position:86-267
               
               
               Cow position:chr8:3423207-3423024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 82

               
               
               Conread position:87-530
               
               
               Cow position:chr8:30324517-30324086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:88-444
               
               
               Cow position:chr8:55897619-55897964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:88-454
               
               
               Cow position:chr8:20091511-20091143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:88-454
               
               
               Cow position:chr8:20150362-20150726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:88-477
               
               
               Cow position:chr8:19979888-19980267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 48

               
               
               Conread position:88-513
               
               
               Cow position:chr8:8097066-8097493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:89-355
               
               
               Cow position:chr8:41219527-41219257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):26, 86

               
               
               Conread position:89-358
               
               
               Cow position:chr8:20320684-20320419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:89-502
               
               
               Cow position:chr8:50310654-50311057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:89-535
               
               
               Cow position:chr8:3015679-3015225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 57

               
               
               Conread position:91-257
               
               
               Cow position:chr8:3793349-3793181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 78

               
               
               Conread position:91-535
               
               
               Cow position:chr8:1999828-1999378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 104

               
               
               Conread position:92-533
               
               
               Cow position:chr8:35580443-35580873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 52

               
               
               Conread position:96-535
               
               
               Cow position:chr8:5177380-5176938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:97-535
               
               
               Cow position:chr8:13661217-13660788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 210

               
               
               Conread position:104-365
               
               
               Cow position:chr8:32278165-32278428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):54, 119

               
               
               Conread position:104-533
               
               
               Cow position:chr8:41626933-41627365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 86

               
               
               Conread position:104-535
               
               
               Cow position:chr8:18049775-18049357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:109-443
               
               
               Cow position:chr8:9907294-9906956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):93, 81

               
               
               Conread position:110-453
               
               
               Cow position:chr8:35769688-35769345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):72, 80

               
               
               Conread position:110-514
               
               
               Cow position:chr8:59042922-59043326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 88

               
               
               Conread position:110-524
               
               
               Cow position:chr8:20033743-20034146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:110-531
               
               
               Cow position:chr8:8967965-8967558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):57, 80

               
               
               Conread position:119-418
               
               
               Cow position:chr8:45446937-45447235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 33

               
               
               Conread position:126-429
               
               
               Cow position:chr8:4648729-4649032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:133-347
               
               
               Cow position:chr8:52229537-52229751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):84, 192

               
               
               Conread position:133-380
               
               
               Cow position:chr8:17167724-17167471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 208

               
               
               Conread position:153-345
               
               
               Cow position:chr8:47500940-47500743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:153-437
               
               
               Cow position:chr8:20073048-20073331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:153-535
               
               
               Cow position:chr8:50709190-50708801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 308

               
               
               Conread position:155-475
               
               
               Cow position:chr8:28987829-28987519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 11

               
               
               Conread position:155-527
               
               
               Cow position:chr8:4924700-4924325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:156-520
               
               
               Cow position:chr8:50937909-50937552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:156-533
               
               
               Cow position:chr8:24202048-24201659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 44

               
               
               Conread position:162-533
               
               
               Cow position:chr8:35991176-35990801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:166-424
               
               
               Cow position:chr8:29026516-29026775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):51, 132

               
               
               Conread position:166-438
               
               
               Cow position:chr8:8577950-8577684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):53, 127

               
               
               Conread position:167-362
               
               
               Cow position:chr8:45126115-45126312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):50, 189

               
               
               Conread position:167-382
               
               
               Cow position:chr8:40579294-40579509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):51, 141

               
               
               Conread position:167-435
               
               
               Cow position:chr8:37192484-37192219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 130

               
               
               Conread position:167-495
               
               
               Cow position:chr8:6484813-6485141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:167-535
               
               
               Cow position:chr8:33974677-33974328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 51

               
               
               Conread position:168-504
               
               
               Cow position:chr8:6531534-6531203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:168-518
               
               
               Cow position:chr8:16031460-16031799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 130

               
               
               Conread position:168-528
               
               
               Cow position:chr8:18057865-18057503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 112

               
               
               Conread position:168-535
               
               
               Cow position:chr8:45830998-45830641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 58

               
               
               Conread position:168-535
               
               
               Cow position:chr8:53362738-53363096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 91

               
               
               Conread position:169-368
               
               
               Cow position:chr8:15857091-15856887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):48, 129

               
               
               Conread position:169-402
               
               
               Cow position:chr8:54147784-54147547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):48, 166

               
               
               Conread position:169-449
               
               
               Cow position:chr8:2931583-2931860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):48, 132

               
               
               Conread position:169-457
               
               
               Cow position:chr8:39174124-39174422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-488
               
               
               Cow position:chr8:28313604-28313923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:169-533
               
               
               Cow position:chr8:15569365-15569701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:169-534
               
               
               Cow position:chr8:13374663-13374299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 63

               
               
               Conread position:169-535
               
               
               Cow position:chr8:2774905-2774539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:169-535
               
               
               Cow position:chr8:6076436-6076787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 47

               
               
               Conread position:169-535
               
               
               Cow position:chr8:10082020-10081679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:170-334
               
               
               Cow position:chr8:44557923-44558089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 57

               
               
               Conread position:171-355
               
               
               Cow position:chr8:37709266-37709082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 137

               
               
               Conread position:171-530
               
               
               Cow position:chr8:9705717-9705365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 140

               
               
               Conread position:171-535
               
               
               Cow position:chr8:9130812-9131173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 209

               
               
               Conread position:171-535
               
               
               Cow position:chr8:13221738-13222088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):46, 170

               
               
               Conread position:171-535
               
               
               Cow position:chr8:16972411-16972776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:171-535
               
               
               Cow position:chr8:45127587-45127943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):44, 127

               
               
               Conread position:172-348
               
               
               Cow position:chr8:1843018-1843187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):49, 127

               
               
               Conread position:172-488
               
               
               Cow position:chr8:26304276-26304600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:173-316
               
               
               Cow position:chr8:33994356-33994213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:173-366
               
               
               Cow position:chr8:20657248-20657444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:176-495
               
               
               Cow position:chr8:45071805-45072122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:176-528
               
               
               Cow position:chr8:16487193-16487542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:177-514
               
               
               Cow position:chr8:5980052-5979719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 144

               
               
               Conread position:181-533
               
               
               Cow position:chr8:32988847-32988501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 111

               
               
               Conread position:183-311
               
               
               Cow position:chr8:38645777-38645910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:190-520
               
               
               Cow position:chr8:45244934-45245249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):27, 144

               
               
               Conread position:195-535
               
               
               Cow position:chr8:1394323-1393984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 165

               
               
               Conread position:196-535
               
               
               Cow position:chr8:3339170-3338843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:197-535
               
               
               Cow position:chr8:21222283-21221957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):5, 99

               
               
               Conread position:198-444
               
               
               Cow position:chr8:60816045-60816293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 152

               
               
               Conread position:203-461
               
               
               Cow position:chr8:57041746-57041999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:203-516
               
               
               Cow position:chr8:34288008-34287700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:203-534
               
               
               Cow position:chr8:28294763-28295090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 95

               
               
               Conread position:206-529
               
               
               Cow position:chr8:10297656-10297979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:207-535
               
               
               Cow position:chr8:53429855-53429527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 258

               
               
               Conread position:212-535
               
               
               Cow position:chr8:2814698-2814374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:214-431
               
               
               Cow position:chr8:5867149-5866927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 121

               
               
               Conread position:215-525
               
               
               Cow position:chr8:60320593-60320286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):80, 72

               
               
               Conread position:217-530
               
               
               Cow position:chr8:25579606-25579300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 144

               
               
               Conread position:218-356
               
               
               Cow position:chr8:37854750-37854884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:223-530
               
               
               Cow position:chr8:20355106-20355395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):78, 139

               
               
               Conread position:223-533
               
               
               Cow position:chr8:4744834-4745143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):117, 71

               
               
               Conread position:224-380
               
               
               Cow position:chr8:12814947-12814789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 79

               
               
               Conread position:226-535
               
               
               Cow position:chr8:19998024-19998328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:23-438
               
               
               Cow position:chr9:41728037-41728448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:32-308
               
               
               Cow position:chr9:5104625-5104341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:32-342
               
               
               Cow position:chr9:8834345-8834035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:34-480
               
               
               Cow position:chr9:6338577-6339032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 143

               
               
               Conread position:40-251
               
               
               Cow position:chr9:61301185-61300972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):9, 105

               
               
               Conread position:40-442
               
               
               Cow position:chr9:12910605-12910202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:42-446
               
               
               Cow position:chr9:4341361-4340969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:43-445
               
               
               Cow position:chr9:10650491-10650105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:46-535
               
               
               Cow position:chr9:44709636-44710107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:47-432
               
               
               Cow position:chr9:16120974-16121355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:50-256
               
               
               Cow position:chr9:48901031-48900826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):165, 23

               
               
               Conread position:50-415
               
               
               Cow position:chr9:19034154-19034510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:50-522
               
               
               Cow position:chr9:53258251-53257787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:50-527
               
               
               Cow position:chr9:32676483-32676963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 11

               
               
               Conread position:50-535
               
               
               Cow position:chr9:20847745-20848222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:53-256
               
               
               Cow position:chr9:31344803-31344597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 29

               
               
               Conread position:53-307
               
               
               Cow position:chr9:52763942-52763701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):149, 7

               
               
               Conread position:54-359
               
               
               Cow position:chr9:6954443-6954135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:54-366
               
               
               Cow position:chr9:33584876-33584562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:55-245
               
               
               Cow position:chr9:11447996-11447809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:55-288
               
               
               Cow position:chr9:36457807-36458043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:55-289
               
               
               Cow position:chr9:4181737-4181506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):120, 26

               
               
               Conread position:55-307
               
               
               Cow position:chr9:28156511-28156754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:55-325
               
               
               Cow position:chr9:52030286-52030554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:55-327
               
               
               Cow position:chr9:41785030-41785291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:55-363
               
               
               Cow position:chr9:58132144-58131846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:55-491
               
               
               Cow position:chr9:56011312-56011738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:284
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:55-514
               
               
               Cow position:chr9:34286606-34287058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 116

               
               
               Conread position:55-535
               
               
               Cow position:chr9:13670446-13670923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:56-242
               
               
               Cow position:chr9:19657164-19656980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):124, 6

               
               
               Conread position:56-535
               
               
               Cow position:chr9:46316971-46316502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:56-535
               
               
               Cow position:chr9:52689803-52689338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:57-265
               
               
               Cow position:chr9:24079112-24079321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):12, 101

               
               
               Conread position:57-300
               
               
               Cow position:chr9:25375925-25375682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 61

               
               
               Conread position:57-416
               
               
               Cow position:chr9:26477025-26477387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:57-535
               
               
               Cow position:chr9:28747708-28747236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:58-298
               
               
               Cow position:chr9:59699739-59699495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:58-348
               
               
               Cow position:chr9:28263331-28263618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):53, 7

               
               
               Conread position:59-330
               
               
               Cow position:chr9:50382506-50382242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:59-382
               
               
               Cow position:chr9:40005291-40005612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):126, 22

               
               
               Conread position:59-535
               
               
               Cow position:chr9:33822926-33823377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 117

               
               
               Conread position:60-253
               
               
               Cow position:chr9:20017210-20017405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:60-262
               
               
               Cow position:chr9:19771173-19771378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:60-313
               
               
               Cow position:chr9:12786662-12786406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:60-381
               
               
               Cow position:chr9:13744120-13743797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:60-535
               
               
               Cow position:chr9:13993973-13994474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:61-305
               
               
               Cow position:chr9:33347667-33347431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 82

               
               
               Conread position:61-392
               
               
               Cow position:chr9:5456354-5456031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:61-533
               
               
               Cow position:chr9:36410536-36410068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:62-239
               
               
               Cow position:chr9:9494976-9495149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-257
               
               
               Cow position:chr9:28315239-28315440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 135

               
               
               Conread position:62-263
               
               
               Cow position:chr9:32052092-32052293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:62-328
               
               
               Cow position:chr9:63361897-63361635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):16, 85

               
               
               Conread position:62-359
               
               
               Cow position:chr9:23956162-23955870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 93

               
               
               Conread position:62-382
               
               
               Cow position:chr9:6189549-6189235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:62-400
               
               
               Cow position:chr9:39011652-39011322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 110

               
               
               Conread position:62-472
               
               
               Cow position:chr9:53762512-53762923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:62-523
               
               
               Cow position:chr9:9403356-9402911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 43

               
               
               Conread position:62-533
               
               
               Cow position:chr9:26403610-26404073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:62-535
               
               
               Cow position:chr9:14975113-14974640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:62-535
               
               
               Cow position:chr9:26279353-26278891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 47

               
               
               Conread position:62-535
               
               
               Cow position:chr9:45141783-45141332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:63-305
               
               
               Cow position:chr9:22466594-22466829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:63-327
               
               
               Cow position:chr9:62144870-62145139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:63-447
               
               
               Cow position:chr9:25804644-25805036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 132

               
               
               Conread position:63-535
               
               
               Cow position:chr9:38792833-38793305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 18

               
               
               Conread position:64-457
               
               
               Cow position:chr9:48627840-48628243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 70

               
               
               Conread position:64-535
               
               
               Cow position:chr9:15806113-15805635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:65-235
               
               
               Cow position:chr9:53323968-53323795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:65-248
               
               
               Cow position:chr9:34264900-34265097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:65-271
               
               
               Cow position:chr9:19718516-19718315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:65-357
               
               
               Cow position:chr9:26102550-26102834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:65-392
               
               
               Cow position:chr9:34283778-34284094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):151, 27

               
               
               Conread position:65-394
               
               
               Cow position:chr9:32670129-32669799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:65-436
               
               
               Cow position:chr9:57274041-57274423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 25

               
               
               Conread position:65-535
               
               
               Cow position:chr9:21460334-21459871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:65-535
               
               
               Cow position:chr9:45285721-45285245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 302

               
               
               Conread position:66-434
               
               
               Cow position:chr9:25583651-25584009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:66-514
               
               
               Cow position:chr9:33597795-33598245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:66-535
               
               
               Cow position:chr9:13205750-13205285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 45

               
               
               Conread position:67-264
               
               
               Cow position:chr9:151688-151886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:67-268
               
               
               Cow position:chr9:59897416-59897611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:67-272
               
               
               Cow position:chr9:12129128-12129333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 141

               
               
               Conread position:67-316
               
               
               Cow position:chr9:17277070-17276819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-317
               
               
               Cow position:chr9:57131320-57131564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:67-412
               
               
               Cow position:chr9:5263325-5263667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:67-454
               
               
               Cow position:chr9:27279126-27279523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 240

               
               
               Conread position:67-512
               
               
               Cow position:chr9:63905793-63905342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:302
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-530
               
               
               Cow position:chr9:13169845-13169390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 113

               
               
               Conread position:67-533
               
               
               Cow position:chr9:20579768-20579342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:322
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:67-534
               
               
               Cow position:chr9:11299854-11299412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:67-535
               
               
               Cow position:chr9:20090881-20091324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:67-535
               
               
               Cow position:chr9:22637921-22638385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:307
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:68-387
               
               
               Cow position:chr9:60080714-60081047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 131

               
               
               Conread position:68-504
               
               
               Cow position:chr9:56088257-56087814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 134

               
               
               Conread position:68-535
               
               
               Cow position:chr9:8636499-8636943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:68-535
               
               
               Cow position:chr9:34689784-34689326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 169

               
               
               Conread position:69-312
               
               
               Cow position:chr9:47214724-47214479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:69-535
               
               
               Cow position:chr9:10118843-10118377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:71-364
               
               
               Cow position:chr9:45728601-45728897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:71-402
               
               
               Cow position:chr9:43757370-43757694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 11

               
               
               Conread position:71-446
               
               
               Cow position:chr9:61302827-61303204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:71-534
               
               
               Cow position:chr9:28726906-28726441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 85

               
               
               Conread position:71-535
               
               
               Cow position:chr9:15215868-15215395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 126

               
               
               Conread position:71-535
               
               
               Cow position:chr9:55256723-55256264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:72-334
               
               
               Cow position:chr9:9686593-9686327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:72-371
               
               
               Cow position:chr9:17840854-17840554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:72-383
               
               
               Cow position:chr9:31359429-31359738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 83

               
               
               Conread position:73-275
               
               
               Cow position:chr9:42508654-42508861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:73-327
               
               
               Cow position:chr9:61351519-61351259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 238

               
               
               Conread position:73-334
               
               
               Cow position:chr9:34024525-34024788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:73-339
               
               
               Cow position:chr9:37198953-37199215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 95

               
               
               Conread position:73-348
               
               
               Cow position:chr9:9459815-9460076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:73-383
               
               
               Cow position:chr9:36627948-36628241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:73-459
               
               
               Cow position:chr9:59053488-59053889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 121

               
               
               Conread position:73-504
               
               
               Cow position:chr9:9596124-9595700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:73-520
               
               
               Cow position:chr9:34375100-34374659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:73-529
               
               
               Cow position:chr9:24887031-24887477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:73-529
               
               
               Cow position:chr9:36491078-36490615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 375

               
               
               Conread position:73-530
               
               
               Cow position:chr9:41282838-41283309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:73-535
               
               
               Cow position:chr9:18253094-18252641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:315
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):38, 187

               
               
               Conread position:73-535
               
               
               Cow position:chr9:26345136-26344699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:73-535
               
               
               Cow position:chr9:35166995-35167453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 128

               
               
               Conread position:74-494
               
               
               Cow position:chr9:64105730-64106150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:74-533
               
               
               Cow position:chr9:34666279-34666692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:74-535
               
               
               Cow position:chr9:32307407-32306954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:74-535
               
               
               Cow position:chr9:33219132-33218666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 149

               
               
               Conread position:74-535
               
               
               Cow position:chr9:61022448-61022896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:75-264
               
               
               Cow position:chr9:40984332-40984523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:75-305
               
               
               Cow position:chr9:33151577-33151799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:75-315
               
               
               Cow position:chr9:12337728-12337970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:75-366
               
               
               Cow position:chr9:9311687-9311980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:76-348
               
               
               Cow position:chr9:35547094-35547372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 117

               
               
               Conread position:76-402
               
               
               Cow position:chr9:27355747-27356077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:76-402
               
               
               Cow position:chr9:27358533-27358863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:79-364
               
               
               Cow position:chr9:43159587-43159858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 65

               
               
               Conread position:79-535
               
               
               Cow position:chr9:8936980-8937434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:307
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:81-267
               
               
               Cow position:chr9:40603501-40603689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:81-290
               
               
               Cow position:chr9:27345755-27345540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:81-382
               
               
               Cow position:chr9:11969020-11969324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):27, 78

               
               
               Conread position:81-534
               
               
               Cow position:chr9:17872273-17871823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:82-248
               
               
               Cow position:chr9:45740309-45740140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 61

               
               
               Conread position:82-276
               
               
               Cow position:chr9:34707475-34707282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 61

               
               
               Conread position:82-533
               
               
               Cow position:chr9:61738755-61739200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 87

               
               
               Conread position:82-534
               
               
               Cow position:chr9:58452235-58451814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 78

               
               
               Conread position:86-535
               
               
               Cow position:chr9:18216073-18215628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:304
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):25, 102

               
               
               Conread position:88-533
               
               
               Cow position:chr9:57897256-57896841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:88-535
               
               
               Cow position:chr9:17799476-17799935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:88-535
               
               
               Cow position:chr9:20942778-20942326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 107

               
               
               Conread position:89-264
               
               
               Cow position:chr9:52998536-52998362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:89-266
               
               
               Cow position:chr9:1712866-1712686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:89-288
               
               
               Cow position:chr9:22165875-22165671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):25, 93

               
               
               Conread position:89-337
               
               
               Cow position:chr9:5164143-5163894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):126, 149

               
               
               Conread position:89-414
               
               
               Cow position:chr9:1756309-1755973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 209

               
               
               Conread position:89-439
               
               
               Cow position:chr9:21080415-21080754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):259, 60

               
               
               Conread position:89-445
               
               
               Cow position:chr9:9815255-9815613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):126, 172

               
               
               Conread position:89-533
               
               
               Cow position:chr9:34958210-34957768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:89-535
               
               
               Cow position:chr9:22443781-22443326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:90-492
               
               
               Cow position:chr9:3185972-3186385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:91-525
               
               
               Cow position:chr9:56772905-56773355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 162

               
               
               Conread position:93-402
               
               
               Cow position:chr9:52267916-52267600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:93-535
               
               
               Cow position:chr9:29006405-29006846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:97-495
               
               
               Cow position:chr9:33120038-33119637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 360

               
               
               Conread position:104-268
               
               
               Cow position:chr9:64310919-64310757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):66, 36

               
               
               Conread position:109-377
               
               
               Cow position:chr9:54411296-54411018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):73, 81

               
               
               Conread position:109-461
               
               
               Cow position:chr9:44834100-44833749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):108, 80

               
               
               Conread position:109-533
               
               
               Cow position:chr9:17741076-17740659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:112-535
               
               
               Cow position:chr9:9551959-9552373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:119-390
               
               
               Cow position:chr9:6596350-6596090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):229, 22

               
               
               Conread position:120-504
               
               
               Cow position:chr9:1729801-1729421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):61, 65

               
               
               Conread position:121-396
               
               
               Cow position:chr9:41394773-41394504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 40

               
               
               Conread position:133-380
               
               
               Cow position:chr9:53751076-53750824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 182

               
               
               Conread position:133-527
               
               
               Cow position:chr9:17411309-17410908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 323

               
               
               Conread position:141-354
               
               
               Cow position:chr9:32982183-32981963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:143-482
               
               
               Cow position:chr9:4268086-4267748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 170

               
               
               Conread position:143-517
               
               
               Cow position:chr9:31814490-31814111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 284

               
               
               Conread position:143-533
               
               
               Cow position:chr9:9406155-9405771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:144-522
               
               
               Cow position:chr9:31079180-31078812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 31

               
               
               Conread position:153-461
               
               
               Cow position:chr9:6685805-6686085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):64, 145

               
               
               Conread position:154-355
               
               
               Cow position:chr9:28754724-28754929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:155-535
               
               
               Cow position:chr9:7634177-7634554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 275

               
               
               Conread position:158-535
               
               
               Cow position:chr9:22696134-22696502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):29, 34

               
               
               Conread position:161-535
               
               
               Cow position:chr9:9625096-9624742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):55, 47

               
               
               Conread position:162-393
               
               
               Cow position:chr9:52839966-52839739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 131

               
               
               Conread position:167-382
               
               
               Cow position:chr9:1867371-1867586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 108

               
               
               Conread position:169-292
               
               
               Cow position:chr9:6293517-6293641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-294
               
               
               Cow position:chr9:55354533-55354659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-301
               
               
               Cow position:chr9:16137420-16137288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:169-311
               
               
               Cow position:chr9:39758440-39758583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:169-336
               
               
               Cow position:chr9:54615378-54615212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):47, 64

               
               
               Conread position:169-515
               
               
               Cow position:chr9:8562744-8563106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 73

               
               
               Conread position:169-534
               
               
               Cow position:chr9:41679667-41680019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:169-535
               
               
               Cow position:chr9:5763708-5763344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:169-535
               
               
               Cow position:chr9:18342655-18343008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 123

               
               
               Conread position:170-410
               
               
               Cow position:chr9:49293220-49292981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:171-364
               
               
               Cow position:chr9:3343673-3343861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 124

               
               
               Conread position:171-535
               
               
               Cow position:chr9:5594427-5594786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:171-535
               
               
               Cow position:chr9:55084377-55084011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 87

               
               
               Conread position:175-535
               
               
               Cow position:chr9:55321565-55321931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):42, 198

               
               
               Conread position:176-535
               
               
               Cow position:chr9:49983159-49982811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:177-533
               
               
               Cow position:chr9:36445550-36445905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 204

               
               
               Conread position:189-427
               
               
               Cow position:chr9:43875777-43875540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):28, 201

               
               
               Conread position:191-535
               
               
               Cow position:chr9:6089033-6089383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):122, 265

               
               
               Conread position:195-457
               
               
               Cow position:chr9:1916234-1916499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):7, 119

               
               
               Conread position:195-533
               
               
               Cow position:chr9:37099290-37098950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):90, 138

               
               
               Conread position:214-533
               
               
               Cow position:chr9:5433600-5433915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 213

               
               
               Conread position:217-517
               
               
               Cow position:chr9:36827106-36827392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:223-525
               
               
               Cow position:chr9:3387666-3387967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):127, 238

               
               
               Conread position:224-426
               
               
               Cow position:chr9:44921415-44921210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:225-535
               
               
               Cow position:chr9:22360989-22361300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 156

               
               
               Conread position:259-397
               
               
               Cow position:chr9:42509129-42509266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:259-531
               
               
               Cow position:chr9:1712463-1712206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:14-523
               
               
               Cow position:chrX:11633968-11633460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:27-396
               
               
               Cow position:chrX:38560828-38560462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:28-472
               
               
               Cow position:chrX:22921599-22921147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 150

               
               
               Conread position:32-535
               
               
               Cow position:chrX:9634920-9635411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:37-532
               
               
               Cow position:chrX:21642213-21642705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 37

               
               
               Conread position:39-535
               
               
               Cow position:chrX:34532774-34532301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 34

               
               
               Conread position:46-239
               
               
               Cow position:chrX:41215580-41215385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:46-512
               
               
               Cow position:chrX:46588083-46587611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:47-535
               
               
               Cow position:chrX:11656332-11655856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 15

               
               
               Conread position:47-535
               
               
               Cow position:chrX:44055061-44054571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 148

               
               
               Conread position:48-268
               
               
               Cow position:chrX:18439252-18439030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:49-240
               
               
               Cow position:chrX:4750085-4750270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:49-307
               
               
               Cow position:chrX:2936209-2935952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:49-535
               
               
               Cow position:chrX:6544499-6544026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 23

               
               
               Conread position:50-300
               
               
               Cow position:chrX:17524131-17524382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 29

               
               
               Conread position:50-454
               
               
               Cow position:chrX:5118247-5118655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 10

               
               
               Conread position:51-302
               
               
               Cow position:chrX:4327927-4328183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):31, 138

               
               
               Conread position:51-332
               
               
               Cow position:chrX:41941877-41941597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:51-365
               
               
               Cow position:chrX:8493319-8493013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:51-412
               
               
               Cow position:chrX:30337701-30338053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:53-245
               
               
               Cow position:chrX:17525625-17525810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):160, 88

               
               
               Conread position:53-305
               
               
               Cow position:chrX:42480077-42479832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:53-526
               
               
               Cow position:chrX:48237068-48236590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:321
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):47, 36

               
               
               Conread position:54-246
               
               
               Cow position:chrX:41011142-41010954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 89

               
               
               Conread position:54-296
               
               
               Cow position:chrX:32942827-32943070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):21, 57

               
               
               Conread position:54-318
               
               
               Cow position:chrX:16836045-16836303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:54-337
               
               
               Cow position:chrX:17956939-17956661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:54-418
               
               
               Cow position:chrX:4403568-4403197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:54-535
               
               
               Cow position:chrX:7722225-7721754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 80

               
               
               Conread position:54-535
               
               
               Cow position:chrX:15146946-15147416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:54-535
               
               
               Cow position:chrX:42380861-42381330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:55-284
               
               
               Cow position:chrX:34508813-34508562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:55-288
               
               
               Cow position:chrX:42449758-42450000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 146

               
               
               Conread position:55-299
               
               
               Cow position:chrX:27668713-27668954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:55-313
               
               
               Cow position:chrX:42894172-42893914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:55-322
               
               
               Cow position:chrX:26205207-26205466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:55-343
               
               
               Cow position:chrX:16984881-16984587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:55-347
               
               
               Cow position:chrX:6599525-6599828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:55-395
               
               
               Cow position:chrX:47345580-47345240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:55-445
               
               
               Cow position:chrX:5919739-5919352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 56

               
               
               Conread position:55-525
               
               
               Cow position:chrX:3580196-3579716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:55-529
               
               
               Cow position:chrX:13191320-13191768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):160, 23

               
               
               Conread position:55-532
               
               
               Cow position:chrX:41674346-41673876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 10

               
               
               Conread position:55-535
               
               
               Cow position:chrX:4996839-4996381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 248

               
               
               Conread position:55-535
               
               
               Cow position:chrX:27431676-27432149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 26

               
               
               Conread position:56-239
               
               
               Cow position:chrX:40556215-40556396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:56-277
               
               
               Cow position:chrX:32867120-32866900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:56-382
               
               
               Cow position:chrX:48071408-48071080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:56-450
               
               
               Cow position:chrX:46546626-46547021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:57-234
               
               
               Cow position:chrX:11589122-11589299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:57-256
               
               
               Cow position:chrX:20666654-20666855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 151

               
               
               Conread position:57-267
               
               
               Cow position:chrX:4092170-4091959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:57-275
               
               
               Cow position:chrX:35409996-35409779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:57-393
               
               
               Cow position:chrX:1466411-1466069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 92

               
               
               Conread position:57-408
               
               
               Cow position:chrX:12095522-12095880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:57-461
               
               
               Cow position:chrX:27207045-27206639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:57-524
               
               
               Cow position:chrX:12979589-12980050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:57-535
               
               
               Cow position:chrX:31948688-31949161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:58-346
               
               
               Cow position:chrX:11325863-11326143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):56, 7

               
               
               Conread position:58-362
               
               
               Cow position:chrX:20957485-20957190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:58-535
               
               
               Cow position:chrX:17795229-17794755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 42

               
               
               Conread position:59-305
               
               
               Cow position:chrX:17293203-17292951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 119

               
               
               Conread position:59-436
               
               
               Cow position:chrX:41871304-41870938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:59-479
               
               
               Cow position:chrX:22387000-22387421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:60-305
               
               
               Cow position:chrX:39290599-39290356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:60-379
               
               
               Cow position:chrX:4152798-4153113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):12, 87

               
               
               Conread position:60-446
               
               
               Cow position:chrX:29723996-29723596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:276
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):51, 134

               
               
               Conread position:60-512
               
               
               Cow position:chrX:41526290-41526730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:60-516
               
               
               Cow position:chrX:8869159-8869618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 86

               
               
               Conread position:60-528
               
               
               Cow position:chrX:13177241-13177688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 21

               
               
               Conread position:61-276
               
               
               Cow position:chrX:23358873-23359085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 94

               
               
               Conread position:61-431
               
               
               Cow position:chrX:43115392-43115021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:61-535
               
               
               Cow position:chrX:7351548-7351069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:62-253
               
               
               Cow position:chrX:31983335-31983536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:62-267
               
               
               Cow position:chrX:34991603-34991399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:62-329
               
               
               Cow position:chrX:28940487-28940219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:62-331
               
               
               Cow position:chrX:48532559-48532286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 115

               
               
               Conread position:62-340
               
               
               Cow position:chrX:19394797-19394515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:62-380
               
               
               Cow position:chrX:36866416-36866092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):49, 138

               
               
               Conread position:62-399
               
               
               Cow position:chrX:34836833-34837152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:62-465
               
               
               Cow position:chrX:34504810-34505212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:62-514
               
               
               Cow position:chrX:34412091-34411631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 344

               
               
               Conread position:62-525
               
               
               Cow position:chrX:29601584-29602053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 111

               
               
               Conread position:62-535
               
               
               Cow position:chrX:9650782-9651276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:62-535
               
               
               Cow position:chrX:27705827-27705363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:327
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:63-232
               
               
               Cow position:chrX:4486781-4486954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:63-376
               
               
               Cow position:chrX:19469275-19469575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:63-393
               
               
               Cow position:chrX:45649110-45648781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:63-461
               
               
               Cow position:chrX:32821281-32820868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:63-472
               
               
               Cow position:chrX:4399360-4398959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:63-535
               
               
               Cow position:chrX:33854983-33855463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 81

               
               
               Conread position:64-339
               
               
               Cow position:chrX:40531787-40532080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:64-363
               
               
               Cow position:chrX:13122185-13121868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 138

               
               
               Conread position:64-445
               
               
               Cow position:chrX:20584553-20584178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:64-535
               
               
               Cow position:chrX:4632611-4633081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 137

               
               
               Conread position:65-242
               
               
               Cow position:chrX:11602246-11602423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 163

               
               
               Conread position:65-380
               
               
               Cow position:chrX:22115074-22115396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 244

               
               
               Conread position:65-415
               
               
               Cow position:chrX:42927590-42927933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:65-454
               
               
               Cow position:chrX:25207620-25207996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:278
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:65-456
               
               
               Cow position:chrX:15231416-15231809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 133

               
               
               Conread position:65-535
               
               
               Cow position:chrX:10865629-10866097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 135

               
               
               Conread position:65-535
               
               
               Cow position:chrX:25815655-25816126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 131

               
               
               Conread position:65-535
               
               
               Cow position:chrX:38964333-38963879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:66-286
               
               
               Cow position:chrX:31480203-31479987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:66-287
               
               
               Cow position:chrX:35659034-35658814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 172

               
               
               Conread position:66-348
               
               
               Cow position:chrX:22392749-22393031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:66-387
               
               
               Cow position:chrX:40680853-40680525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:66-399
               
               
               Cow position:chrX:42855702-42855358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):45, 335

               
               
               Conread position:66-410
               
               
               Cow position:chrX:29230246-29229901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 245

               
               
               Conread position:66-535
               
               
               Cow position:chrX:37489967-37489500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:324
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):40, 22

               
               
               Conread position:67-235
               
               
               Cow position:chrX:14135911-14135745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:67-286
               
               
               Cow position:chrX:20583899-20583682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:67-319
               
               
               Cow position:chrX:26843028-26843283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 130

               
               
               Conread position:67-331
               
               
               Cow position:chrX:48574885-48574618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 110

               
               
               Conread position:67-343
               
               
               Cow position:chrX:24749326-24749047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):16, 176

               
               
               Conread position:67-348
               
               
               Cow position:chrX:27306677-27306407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):151, 57

               
               
               Conread position:67-535
               
               
               Cow position:chrX:161638-161198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:313
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):148, 67

               
               
               Conread position:68-331
               
               
               Cow position:chrX:44590824-44591090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 125

               
               
               Conread position:68-461
               
               
               Cow position:chrX:27145836-27145463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:68-472
               
               
               Cow position:chrX:34792086-34792477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 78

               
               
               Conread position:68-535
               
               
               Cow position:chrX:21593528-21593053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 178

               
               
               Conread position:68-535
               
               
               Cow position:chrX:22482452-22482919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:68-535
               
               
               Cow position:chrX:42246944-42247414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 330

               
               
               Conread position:69-287
               
               
               Cow position:chrX:908177-907961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:69-288
               
               
               Cow position:chrX:4559968-4559753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:69-514
               
               
               Cow position:chrX:29541991-29542427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 78

               
               
               Conread position:69-530
               
               
               Cow position:chrX:22075031-22074575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 54

               
               
               Conread position:69-530
               
               
               Cow position:chrX:37072622-37072181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:70-306
               
               
               Cow position:chrX:32208591-32208826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:70-535
               
               
               Cow position:chrX:10251969-10252412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:71-246
               
               
               Cow position:chrX:6480361-6480540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:71-278
               
               
               Cow position:chrX:46079323-46079109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 42

               
               
               Conread position:71-311
               
               
               Cow position:chrX:4467189-4466958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:71-320
               
               
               Cow position:chrX:40337144-40336893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:71-387
               
               
               Cow position:chrX:6559223-6559531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:71-509
               
               
               Cow position:chrX:29544653-29545083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:71-534
               
               
               Cow position:chrX:30922406-30921956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:323
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):40, 118

               
               
               Conread position:71-535
               
               
               Cow position:chrX:47873101-47873571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:312
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):11, 99

               
               
               Conread position:73-253
               
               
               Cow position:chrX:25930872-25930686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 124

               
               
               Conread position:73-288
               
               
               Cow position:chrX:3806910-3806696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:73-297
               
               
               Cow position:chrX:38302047-38301814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:73-305
               
               
               Cow position:chrX:38587613-38587846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:73-374
               
               
               Cow position:chrX:1087916-1088209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:73-433
               
               
               Cow position:chrX:40685097-40685463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:73-445
               
               
               Cow position:chrX:34314253-34313889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:73-450
               
               
               Cow position:chrX:21986069-21986441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 70

               
               
               Conread position:73-514
               
               
               Cow position:chrX:38853443-38852988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 181

               
               
               Conread position:73-524
               
               
               Cow position:chrX:6414264-6413827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 35

               
               
               Conread position:73-525
               
               
               Cow position:chrX:24365590-24366052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:73-528
               
               
               Cow position:chrX:40035210-40035673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:73-531
               
               
               Cow position:chrX:37780880-37781339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:73-535
               
               
               Cow position:chrX:12437051-12437469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:322
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:73-535
               
               
               Cow position:chrX:13913307-13912849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:73-535
               
               
               Cow position:chrX:40557426-40557906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 399

               
               
               Conread position:74-364
               
               
               Cow position:chrX:4109416-4109129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 205

               
               
               Conread position:74-421
               
               
               Cow position:chrX:26881331-26881688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:74-504
               
               
               Cow position:chrX:1499885-1499471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:74-535
               
               
               Cow position:chrX:38218944-38218485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:75-252
               
               
               Cow position:chrX:23471638-23471816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 71

               
               
               Conread position:75-374
               
               
               Cow position:chrX:48004076-48003774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:75-392
               
               
               Cow position:chrX:4296594-4296910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:75-393
               
               
               Cow position:chrX:33654613-33654933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:75-445
               
               
               Cow position:chrX:47279707-47280076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:75-529
               
               
               Cow position:chrX:30133094-30133548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 36

               
               
               Conread position:75-535
               
               
               Cow position:chrX:9251933-9252408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:75-535
               
               
               Cow position:chrX:14883727-14884192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:75-535
               
               
               Cow position:chrX:20339665-20340121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:75-535
               
               
               Cow position:chrX:34377169-34376727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:75-535
               
               
               Cow position:chrX:40826520-40826977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 118

               
               
               Conread position:75-535
               
               
               Cow position:chrX:48010835-48010364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:79-311
               
               
               Cow position:chrX:27074825-27075060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):32, 91

               
               
               Conread position:79-381
               
               
               Cow position:chrX:39220314-39220000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):32, 246

               
               
               Conread position:79-528
               
               
               Cow position:chrX:44397237-44396792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:79-535
               
               
               Cow position:chrX:38642468-38642030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:79-535
               
               
               Cow position:chrX:40269734-40269246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 50

               
               
               Conread position:80-528
               
               
               Cow position:chrX:1615833-1616271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 60

               
               
               Conread position:81-265
               
               
               Cow position:chrX:41858660-41858845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:81-398
               
               
               Cow position:chrX:20168779-20168461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):135, 96

               
               
               Conread position:81-445
               
               
               Cow position:chrX:8917619-8917252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:82-289
               
               
               Cow position:chrX:41862578-41862377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):134, 27

               
               
               Conread position:83-535
               
               
               Cow position:chrX:34544008-34543557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:84-535
               
               
               Cow position:chrX:47344520-47344064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:86-444
               
               
               Cow position:chrX:48646390-48646743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):24, 47

               
               
               Conread position:86-453
               
               
               Cow position:chrX:27228348-27227971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 218

               
               
               Conread position:88-431
               
               
               Cow position:chrX:45875607-45875261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:88-433
               
               
               Cow position:chrX:48262822-48262474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:88-533
               
               
               Cow position:chrX:26493224-26492774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:88-535
               
               
               Cow position:chrX:20152065-20151620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:318
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:89-535
               
               
               Cow position:chrX:31436685-31436250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:91-513
               
               
               Cow position:chrX:35273586-35273144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 161

               
               
               Conread position:97-535
               
               
               Cow position:chrX:35543092-35542661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 66

               
               
               Conread position:101-401
               
               
               Cow position:chrX:169340-169640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 160

               
               
               Conread position:104-364
               
               
               Cow position:chrX:13147178-13146918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 86

               
               
               Conread position:104-367
               
               
               Cow position:chrX:19965197-19965468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):78, 87

               
               
               Conread position:104-405
               
               
               Cow position:chrX:40283321-40283021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:104-417
               
               
               Cow position:chrX:46291339-46291023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):111, 39

               
               
               Conread position:104-425
               
               
               Cow position:chrX:27945855-27946183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 87

               
               
               Conread position:104-471
               
               
               Cow position:chrX:14275550-14275901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 39

               
               
               Conread position:104-493
               
               
               Cow position:chrX:47484064-47484459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:104-535
               
               
               Cow position:chrX:11844042-11844471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):78, 92

               
               
               Conread position:104-535
               
               
               Cow position:chrX:13647586-13648014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 184

               
               
               Conread position:104-535
               
               
               Cow position:chrX:31294371-31294772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:302
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):49, 191

               
               
               Conread position:109-286
               
               
               Cow position:chrX:47079821-47079643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:109-468
               
               
               Cow position:chrX:27302070-27301701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):74, 83

               
               
               Conread position:111-478
               
               
               Cow position:chrX:31252599-31252245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 146

               
               
               Conread position:112-410
               
               
               Cow position:chrX:4515878-4515577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):143, 31

               
               
               Conread position:119-530
               
               
               Cow position:chrX:16416686-16416283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:291
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:124-398
               
               
               Cow position:chrX:23113461-23113178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:128-535
               
               
               Cow position:chrX:45175022-45174614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:133-328
               
               
               Cow position:chrX:44926625-44926443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:133-530
               
               
               Cow position:chrX:41884242-41884643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:140-412
               
               
               Cow position:chrX:23562794-23562524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):77, 7

               
               
               Conread position:140-527
               
               
               Cow position:chrX:32623733-32623360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:140-533
               
               
               Cow position:chrX:878215-878599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 215

               
               
               Conread position:140-534
               
               
               Cow position:chrX:17726141-17725749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 324

               
               
               Conread position:141-357
               
               
               Cow position:chrX:44095418-44095204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):5, 24

               
               
               Conread position:141-411
               
               
               Cow position:chrX:45670384-45670117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):75, 182

               
               
               Conread position:141-533
               
               
               Cow position:chrX:33640139-33639743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 232

               
               
               Conread position:153-381
               
               
               Cow position:chrX:36514741-36514974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:153-421
               
               
               Cow position:chrX:27119842-27119579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:156-535
               
               
               Cow position:chrX:25338333-25337949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:157-299
               
               
               Cow position:chrX:29501738-29501878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 116

               
               
               Conread position:157-535
               
               
               Cow position:chrX:42469794-42470167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 191

               
               
               Conread position:158-535
               
               
               Cow position:chrX:29289723-29289346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:166-535
               
               
               Cow position:chrX:7695885-7695531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:166-535
               
               
               Cow position:chrX:11454912-11455282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):142, 52

               
               
               Conread position:166-535
               
               
               Cow position:chrX:45414166-45414530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:167-454
               
               
               Cow position:chrX:46433627-46433333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 31

               
               
               Conread position:167-530
               
               
               Cow position:chrX:39558213-39558573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 250

               
               
               Conread position:167-535
               
               
               Cow position:chrX:15815222-15814867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 131

               
               
               Conread position:168-412
               
               
               Cow position:chrX:33539305-33539054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):47, 120

               
               
               Conread position:168-432
               
               
               Cow position:chrX:19273572-19273854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:168-533
               
               
               Cow position:chrX:35224432-35224074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 130

               
               
               Conread position:168-533
               
               
               Cow position:chrX:37232542-37232181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:168-535
               
               
               Cow position:chrX:17964387-17964752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):49, 115

               
               
               Conread position:169-329
               
               
               Cow position:chrX:4615877-4616035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:169-348
               
               
               Cow position:chrX:19943102-19943282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 55

               
               
               Conread position:169-383
               
               
               Cow position:chrX:5135386-5135607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):44, 8

               
               
               Conread position:169-440
               
               
               Cow position:chrX:616125-616401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:169-496
               
               
               Cow position:chrX:31312163-31311835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 288

               
               
               Conread position:169-525
               
               
               Cow position:chrX:23092005-23091661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 164

               
               
               Conread position:169-530
               
               
               Cow position:chrX:618875-619233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 36

               
               
               Conread position:169-535
               
               
               Cow position:chrX:42171163-42171529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 6

               
               
               Conread position:170-490
               
               
               Cow position:chrX:36068148-36067835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 218

               
               
               Conread position:170-535
               
               
               Cow position:chrX:11938801-11939154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:171-318
               
               
               Cow position:chrX:45382914-45383061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 67

               
               
               Conread position:171-361
               
               
               Cow position:chrX:46429687-46429881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:157
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:171-367
               
               
               Cow position:chrX:12082192-12082391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):46, 74

               
               
               Conread position:171-383
               
               
               Cow position:chrX:41192836-41192626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 173

               
               
               Conread position:171-529
               
               
               Cow position:chrX:630178-630532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:171-533
               
               
               Cow position:chrX:32431756-32431399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):46, 202

               
               
               Conread position:172-461
               
               
               Cow position:chrX:41068856-41068567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):49, 229

               
               
               Conread position:172-526
               
               
               Cow position:chrX:37574971-37574635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 123

               
               
               Conread position:172-535
               
               
               Cow position:chrX:27176182-27176550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:177-340
               
               
               Cow position:chrX:29585245-29585083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 116

               
               
               Conread position:177-348
               
               
               Cow position:chrX:25328490-25328651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:177-535
               
               
               Cow position:chrX:11073065-11073421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 195

               
               
               Conread position:179-530
               
               
               Cow position:chrX:48194913-48195266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:179-533
               
               
               Cow position:chrX:46722612-46722969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 7

               
               
               Conread position:179-535
               
               
               Cow position:chrX:19690338-19689988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):38, 5

               
               
               Conread position:183-496
               
               
               Cow position:chrX:47362503-47362802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 175

               
               
               Conread position:190-496
               
               
               Cow position:chrX:23785759-23785463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):204, 107

               
               
               Conread position:190-533
               
               
               Cow position:chrX:10959282-10959629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):25, 284

               
               
               Conread position:190-535
               
               
               Cow position:chrX:7572018-7571676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 204

               
               
               Conread position:190-535
               
               
               Cow position:chrX:21004797-21004454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):25, 234

               
               
               Conread position:197-520
               
               
               Cow position:chrX:39126432-39126123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):18, 98

               
               
               Conread position:206-535
               
               
               Cow position:chrX:27680495-27680173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 155

               
               
               Conread position:208-530
               
               
               Cow position:chrX:34402095-34401772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:210-453
               
               
               Cow position:chrX:48570895-48571145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):7, 229

               
               
               Conread position:210-507
               
               
               Cow position:chrX:47300810-47301105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 88

               
               
               Conread position:210-533
               
               
               Cow position:chrX:48652628-48652955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 88

               
               
               Conread position:210-534
               
               
               Cow position:chrX:488597-488261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):7, 261

               
               
               Conread position:210-535
               
               
               Cow position:chrX:45403732-45404064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 255

               
               
               Conread position:210-535
               
               
               Cow position:chrX:47967700-47967369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):7, 217

               
               
               Conread position:214-455
               
               
               Cow position:chrX:12405293-12405541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):95, 83

               
               
               Conread position:214-507
               
               
               Cow position:chrX:47302789-47303081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 83

               
               
               Conread position:214-535
               
               
               Cow position:chrX:6278410-6278736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 246

               
               
               Conread position:217-413
               
               
               Cow position:chrX:4991928-4992128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 80

               
               
               Conread position:217-535
               
               
               Cow position:chrX:42507563-42507877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):133, 80

               
               
               Conread position:228-529
               
               
               Cow position:chrX:13785286-13785591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 254

               
               
               Conread position:232-533
               
               
               Cow position:chrX:26875811-26876109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 229

               
               
               Conread position:247-535
               
               
               Cow position:chrX:34991091-34990811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 200

               
               
               Conread position:249-380
               
               
               Cow position:chrX:5677838-5677971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):97, 0