Cow genome map
| Conread name: | rlyg25_m15.y1 |
| Conread position: | 97-359 |
| Cow position: | chr1:61550515-61550781 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 143, 13 |
| Conread position: | 97-407 |
| Cow position: | chr1:42542484-42542798 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 175 |
| Conread position: | 105-387 |
| Cow position: | chr1:84278183-84278468 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 27, 141 |
| Conread position: | 153-413 |
| Cow position: | chr1:99069184-99069443 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 87 |
| Conread position: | 111-376 |
| Cow position: | chr11:49707107-49706846 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 157 |
| Conread position: | 115-246 |
| Cow position: | chr11:20365256-20365123 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 111-407 |
| Cow position: | chr12:9616562-9616271 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 129-392 |
| Cow position: | chr13:25921513-25921261 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 75, 32 |
| Conread position: | 154-415 |
| Cow position: | chr13:1165697-1165438 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 50 |
| Conread position: | 171-410 |
| Cow position: | chr13:14824951-14824711 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 76, 50 |
| Conread position: | 209-407 |
| Cow position: | chr13:42341609-42341806 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 86, 12 |
| Conread position: | 110-253 |
| Cow position: | chr14:38999973-39000117 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 110-367 |
| Cow position: | chr14:5404502-5404247 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 130 |
| Conread position: | 156-405 |
| Cow position: | chr15:35219675-35219920 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 48 |
| Conread position: | 115-228 |
| Cow position: | chr16:40665293-40665180 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-405 |
| Cow position: | chr18:24460451-24460621 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 181-398 |
| Cow position: | chr2:59479732-59479946 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 109, 27 |
| Conread position: | 181-406 |
| Cow position: | chr2:14514205-14513974 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 75, 151 |
| Conread position: | 105-407 |
| Cow position: | chr20:8860925-8860616 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 51 |
| Conread position: | 191-405 |
| Cow position: | chr20:4694946-4695169 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 84-410 |
| Cow position: | chr21:45299091-45299420 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 98-405 |
| Cow position: | chr21:28148239-28147936 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 12 |
| Conread position: | 101-406 |
| Cow position: | chr21:4261793-4262096 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 44, 114 |
| Conread position: | 105-234 |
| Cow position: | chr21:18782579-18782450 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 52, 118 |
| Conread position: | 103-411 |
| Cow position: | chr22:5265337-5265037 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 106-344 |
| Cow position: | chr23:10683602-10683841 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 111-411 |
| Cow position: | chr23:38354119-38354399 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 91, 38 |
| Conread position: | 180-420 |
| Cow position: | chr24:35361898-35362139 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 106, 60 |
| Conread position: | 97-233 |
| Cow position: | chr25:16897250-16897395 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 97-406 |
| Cow position: | chr25:7019764-7020064 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 99-251 |
| Cow position: | chr25:18647079-18646921 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 61 |
| Conread position: | 96-422 |
| Cow position: | chr26:7122841-7122527 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 47 |
| Conread position: | 97-406 |
| Cow position: | chr26:15970192-15970489 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 156-407 |
| Cow position: | chr26:30731418-30731668 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 135, 65 |
| Conread position: | 111-351 |
| Cow position: | chr27:4064789-4065030 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 63, 127 |
| Conread position: | 116-398 |
| Cow position: | chr27:26071204-26070924 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 190-407 |
| Cow position: | chr27:24386377-24386592 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 98-351 |
| Cow position: | chr28:20111843-20111597 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 16 |
| Conread position: | 163-407 |
| Cow position: | chr28:24563993-24563752 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 132, 58 |
| Conread position: | 187-405 |
| Cow position: | chr29:29995957-29995748 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 108, 53 |
| Conread position: | 215-406 |
| Cow position: | chr29:18342473-18342281 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 105-242 |
| Cow position: | chr3:46287675-46287535 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 50 |
| Conread position: | 97-416 |
| Cow position: | chr4:65394112-65394430 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 146 |
| Conread position: | 106-241 |
| Cow position: | chr4:4372272-4372406 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 97-359 |
| Cow position: | chr5:3754118-3753833 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 99, 14 |
| Conread position: | 98-344 |
| Cow position: | chr6:1525407-1525662 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 110-270 |
| Cow position: | chr6:16214658-16214505 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 55 |
| Conread position: | 153-407 |
| Cow position: | chr6:4514036-4513788 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 142, 32 |
| Conread position: | 95-348 |
| Cow position: | chr7:58544612-58544357 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 6, 148 |
| Conread position: | 97-239 |
| Cow position: | chr8:38071015-38071155 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 78, 107 |
| Conread position: | 115-407 |
| Cow position: | chr8:50922582-50922875 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 137 |
| Conread position: | 172-407 |
| Cow position: | chr9:12851606-12851371 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 97-407 |
| Cow position: | chrX:13035708-13036014 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 50 |
| Conread position: | 105-257 |
| Cow position: | chrX:41811308-41811154 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 110-407 |
| Cow position: | chrX:21621860-21621565 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 88, 44 |